molstar 2.4.1 → 3.0.0-dev.0

package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js

@@ -25,6 +25,7 @@ var transfer_function_1 = require("./transfer-function");
 var clipping_data_1 = require("../clipping-data");
 var volume_1 = require("../../../mol-model/volume");
 var names_1 = require("../../../mol-util/color/names");
+var substance_data_1 = require("../substance-data");
 var VolumeBox = (0, box_1.Box)();
 var DirectVolume;
 (function (DirectVolume) {
@@ -192,6 +193,7 @@ var DirectVolume;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var _a = gridDimension.ref.value, x = _a[0], y = _a[1], z = _a[2];
         var counts = { drawCount: VolumeBox.indices.length, vertexCount: x * y * z, groupCount: groupCount, instanceCount: instanceCount };
@@ -205,7 +207,7 @@ var DirectVolume;
         var singleLayer = props.renderMode.name === 'isosurface'
             ? props.renderMode.params.singleLayer
             : false;
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, color), marker), overpaint), transparency), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: mol_util_1.ValueCell.create(VolumeBox.vertices), elements: mol_util_1.ValueCell.create(VolumeBox.indices), boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)), uIsoValue: mol_util_1.ValueCell.create(getNormalizedIsoValue((0, linear_algebra_1.Vec2)(), isoValue, directVolume.gridStats.ref.value)), uBboxMin: bboxMin, uBboxMax: bboxMax, uBboxSize: bboxSize, uMaxSteps: mol_util_1.ValueCell.create(getMaxSteps(gridDimension.ref.value, props.stepsPerCell)), uStepScale: mol_util_1.ValueCell.create(getStepScale(directVolume.cellDim.ref.value, props.stepsPerCell)), uJumpLength: mol_util_1.ValueCell.create(props.jumpLength), uTransform: gridTransform, uGridDim: gridDimension, dRenderMode: mol_util_1.ValueCell.create(props.renderMode.name), tTransferTex: transferTex, uTransferScale: mol_util_1.ValueCell.create(getTransferScale(props.stepsPerCell)), dGridTexType: mol_util_1.ValueCell.create(gridTexture.ref.value.getDepth() > 0 ? '3d' : '2d'), uGridTexDim: gridTextureDim, tGridTex: gridTexture, uGridStats: gridStats, uCellDim: directVolume.cellDim, uCartnToUnit: directVolume.cartnToUnit, uUnitToCartn: directVolume.unitToCartn, dPackedGroup: directVolume.packedGroup, dSingleLayer: mol_util_1.ValueCell.create(singleLayer), dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: mol_util_1.ValueCell.create(VolumeBox.vertices), elements: mol_util_1.ValueCell.create(VolumeBox.indices), boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)), uIsoValue: mol_util_1.ValueCell.create(getNormalizedIsoValue((0, linear_algebra_1.Vec2)(), isoValue, directVolume.gridStats.ref.value)), uBboxMin: bboxMin, uBboxMax: bboxMax, uBboxSize: bboxSize, uMaxSteps: mol_util_1.ValueCell.create(getMaxSteps(gridDimension.ref.value, props.stepsPerCell)), uStepScale: mol_util_1.ValueCell.create(getStepScale(directVolume.cellDim.ref.value, props.stepsPerCell)), uJumpLength: mol_util_1.ValueCell.create(props.jumpLength), uTransform: gridTransform, uGridDim: gridDimension, dRenderMode: mol_util_1.ValueCell.create(props.renderMode.name), tTransferTex: transferTex, uTransferScale: mol_util_1.ValueCell.create(getTransferScale(props.stepsPerCell)), dGridTexType: mol_util_1.ValueCell.create(gridTexture.ref.value.getDepth() > 0 ? '3d' : '2d'), uGridTexDim: gridTextureDim, tGridTex: gridTexture, uGridStats: gridStats, uCellDim: directVolume.cellDim, uCartnToUnit: directVolume.cartnToUnit, uUnitToCartn: directVolume.unitToCartn, dPackedGroup: directVolume.packedGroup, dSingleLayer: mol_util_1.ValueCell.create(singleLayer), dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded) });
     }
     function createValuesSimple(directVolume, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);
@@ -213,8 +215,7 @@ var DirectVolume;
         return createValues(directVolume, s.transform, s.locationIterator, s.theme, p);
     }
     function updateValues(values, props) {
-        mol_util_1.ValueCell.updateIfChanged(values.alpha, props.alpha);
-        mol_util_1.ValueCell.updateIfChanged(values.uAlpha, props.alpha);
+        base_1.BaseGeometry.updateValues(values, props);
         mol_util_1.ValueCell.updateIfChanged(values.dDoubleSided, props.doubleSided);
         mol_util_1.ValueCell.updateIfChanged(values.dFlatShaded, props.flatShaded);
         mol_util_1.ValueCell.updateIfChanged(values.dFlipSided, props.flipSided);

package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/image/image.d.ts

@@ -34,6 +34,10 @@ declare namespace Image {
         interpolation: PD.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Image, Params>;

package/lib/commonjs/mol-geo/geometry/image/image.js

@@ -23,6 +23,7 @@ var array_1 = require("../../../mol-util/array");
 var clipping_data_1 = require("../clipping-data");
 var location_1 = require("../../../mol-model/location");
 var util_3 = require("../../../mol-gl/compute/util");
+var substance_data_1 = require("../substance-data");
 var QuadIndices = new Uint32Array([
     0, 1, 2,
     1, 3, 2
@@ -111,11 +112,12 @@ var Image;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: QuadIndices.length, vertexCount: util_3.QuadPositions.length / 3, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(image.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, color), marker), overpaint), transparency), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: image.cornerBuffer, aUv: mol_util_1.ValueCell.create(QuadUvs), elements: mol_util_1.ValueCell.create(QuadIndices), 
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { aPosition: image.cornerBuffer, aUv: mol_util_1.ValueCell.create(QuadUvs), elements: mol_util_1.ValueCell.create(QuadIndices), 
             // aGroup is used as a vertex index here, group id is in tGroupTex
             aGroup: mol_util_1.ValueCell.create((0, array_1.fillSerial)(new Float32Array(4))), boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)), dInterpolation: mol_util_1.ValueCell.create(props.interpolation), uImageTexDim: image.imageTextureDim, tImageTex: image.imageTexture, tGroupTex: image.groupTexture });
     }

package/lib/commonjs/mol-geo/geometry/image/image.js.map

@@ -1 +1 @@
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+{"version":3,"file":"image.js","sourceRoot":"","sources":["../../../../../src/mol-geo/geometry/image/image.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,+CAAoD;AACpD,6EAA2E;AAE3E,wDAAqH;AACrH,uDAAsD;AACtD,mEAAoE;AAEpE,8CAA8C;AAE9C,uEAA2E;AAC3E,gCAAuC;AACvC,4CAA6C;AAE7C,8CAA+C;AAC/C,oDAAyD;AAEzD,0DAA+D;AAE/D,iDAAqD;AACrD,kDAAuD;AACvD,wDAA2D;AAC3D,qDAA6D;AAC7D,oDAAyD;AAEzD,IAAM,WAAW,GAAG,IAAI,WAAW,CAAC;IAChC,CAAC,EAAE,CAAC,EAAE,CAAC;IACP,CAAC,EAAE,CAAC,EAAE,CAAC;CACV,CAAC,CAAC;AAEH,IAAM,OAAO,GAAG,IAAI,YAAY,CAAC;IAC7B,CAAC,EAAE,CAAC;IACJ,CAAC,EAAE,CAAC;IACJ,CAAC,EAAE,CAAC;IACJ,CAAC,EAAE,CAAC;CACP,CAAC,CAAC;AAEU,QAAA,kBAAkB,GAAG;IAC9B,SAAS,EAAE,SAAS;IACpB,WAAW,EAAE,mBAAmB;IAChC,UAAU,EAAE,kBAAkB;IAC9B,SAAS,EAAE,kBAAkB;CAChC,CAAC;AAEW,QAAA,sBAAsB,GAAG,MAAM,CAAC,IAAI,CAAC,0BAAkB,CAAyB,CAAC;AAgB9F,IAAU,KAAK,CAyJd;AAzJD,WAAU,KAAK;IACX,SAAgB,MAAM,CAAC,YAAsC,EAAE,OAAqB,EAAE,YAAsC,EAAE,KAAa;QACvI,OAAO,KAAK,CAAC,CAAC;YACV,MAAM,CAAC,YAAY,EAAE,OAAO,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC,CAAC;YACpD,QAAQ,CAAC,YAAY,EAAE,OAAO,EAAE,YAAY,CAAC,CAAC;IACtD,CAAC;IAJe,YAAM,SAIrB,CAAA;IAED,SAAS,QAAQ,CAAC,KAAY;QAC1B,OAAO,IAAA,iBAAU,EAAC;YACd,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO;SACjC,CAAC,CAAC;IACP,CAAC;IAED,SAAS,QAAQ,CAAC,YAAsC,EAAE,OAAqB,EAAE,YAAsC;QACnH,IAAM,cAAc,GAAG,IAAA,mBAAQ,GAAE,CAAC;QAClC,IAAI,WAAW,GAAG,CAAC,CAAC,CAAC;QAErB,IAAM,KAAK,GAAG,YAAY,CAAC,KAAK,CAAC;QACjC,IAAM,MAAM,GAAG,YAAY,CAAC,MAAM,CAAC;QAEnC,IAAM,KAAK,GAAG;YACV,IAAI,EAAE,OAAgB;YACtB,YAAY,EAAE,oBAAS,CAAC,MAAM,CAAC,YAAY,CAAC;YAC5C,eAAe,EAAE,oBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC;YAC7D,YAAY,EAAE,oBAAS,CAAC,MAAM,CAAC,OAAO,CAAC;YACvC,YAAY,EAAE,oBAAS,CAAC,MAAM,CAAC,YAAY,CAAC;YAC5C,IAAI,cAAc;gBACd,IAAM,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC;gBAChC,IAAI,OAAO,KAAK,WAAW,EAAE;oBACzB,IAAM,CAAC,GAAG,iBAAiB,CAAC,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;oBAC1D,mBAAQ,CAAC,IAAI,CAAC,cAAc,EAAE,CAAC,CAAC,CAAC;oBACjC,WAAW,GAAG,OAAO,CAAC;iBACzB;gBACD,OAAO,cAAc,CAAC;YAC1B,CAAC;SACJ,CAAC;QACF,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,SAAS,MAAM,CAAC,YAAsC,EAAE,OAAqB,EAAE,YAAsC,EAAE,KAAY;QAC/H,IAAM,KAAK,GAAG,YAAY,CAAC,KAAK,CAAC;QACjC,IAAM,MAAM,GAAG,YAAY,CAAC,MAAM,CAAC;QAEnC,oBAAS,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC;QACnD,oBAAS,CAAC,MAAM,CAAC,KAAK,CAAC,eAAe,EAAE,qBAAI,CAAC,GAAG,CAAC,KAAK,CAAC,eAAe,CAAC,GAAG,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC;QAClG,oBAAS,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;QAC9C,oBAAS,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAAE,YAAY,CAAC,CAAC;QACnD,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,SAAgB,WAAW,CAAC,KAAa;QACrC,IAAM,YAAY,GAAG,IAAA,yBAAkB,EAAC,CAAC,EAAE,CAAC,EAAE,UAAU,CAAC,CAAC;QAC1D,IAAM,OAAO,GAAG,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,YAAY,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,CAAC,IAAI,YAAY,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;QAC/E,IAAM,YAAY,GAAG,IAAA,yBAAkB,EAAC,CAAC,EAAE,CAAC,EAAE,UAAU,CAAC,CAAC;QAC1D,OAAO,MAAM,CAAC,YAAY,EAAE,OAAO,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;IAC9D,CAAC;IALe,iBAAW,cAK1B,CAAA;IAEY,YAAM,mDACZ,mBAAY,CAAC,MAAM,KACtB,aAAa,EAAE,kCAAE,CAAC,MAAM,CAAC,SAAS,EAAE,kCAAE,CAAC,eAAe,CAAC,0BAAkB,CAAC,CAAC,GAC9E,CAAC;IAGW,WAAK,GAAiC;QAC/C,MAAM,cAAA;QACN,WAAW,aAAA;QACX,YAAY,cAAA;QACZ,kBAAkB,oBAAA;QAClB,YAAY,cAAA;QACZ,oBAAoB,sBAAA;QACpB,qBAAqB,uBAAA;QACrB,qBAAqB,uBAAA;QACrB,sBAAsB,EAAE,cAAM,OAAA,IAAA,oCAAgB,EAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,cAAM,OAAA,uBAAY,EAAZ,CAAY,CAAC,EAA7C,CAA6C;KAC9E,CAAC;IAEF,SAAS,YAAY,CAAC,KAAY,EAAE,SAAwB,EAAE,UAA4B,EAAE,KAAY,EAAE,KAAwB;QACtH,IAAA,aAAa,GAAiB,UAAU,cAA3B,EAAE,UAAU,GAAK,UAAU,WAAf,CAAgB;QACjD,IAAM,UAAU,GAAG,MAAA,KAAK,CAAC,sBAAsB,CAAC,KAAK,EAAE,SAAS,CAAC,CAAC;QAElE,IAAM,KAAK,GAAG,IAAA,yBAAY,EAAC,UAAU,EAAE,UAAU,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC;QAChE,IAAM,MAAM,GAAG,IAAA,2BAAa,EAAC,aAAa,GAAG,UAAU,CAAC,CAAC;QACzD,IAAM,SAAS,GAAG,IAAA,qCAAoB,GAAE,CAAC;QACzC,IAAM,YAAY,GAAG,IAAA,2CAAuB,GAAE,CAAC;QAC/C,IAAM,QAAQ,GAAG,IAAA,qCAAoB,GAAE,CAAC;QACxC,IAAM,QAAQ,GAAG,IAAA,mCAAmB,GAAE,CAAC;QAEvC,IAAM,MAAM,GAAG,EAAE,SAAS,EAAE,WAAW,CAAC,MAAM,EAAE,WAAW,EAAE,oBAAa,CAAC,MAAM,GAAG,CAAC,EAAE,UAAU,YAAA,EAAE,aAAa,eAAA,EAAE,CAAC;QAEnH,IAAM,uBAAuB,GAAG,mBAAQ,CAAC,KAAK,CAAC,KAAK,CAAC,cAAc,CAAC,CAAC;QACrE,IAAM,cAAc,GAAG,IAAA,uCAAgC,EAAC,uBAAuB,EAAE,SAAS,CAAC,UAAU,CAAC,GAAG,CAAC,KAAK,EAAE,aAAa,CAAC,CAAC;QAEhI,iNACO,KAAK,GACL,MAAM,GACN,SAAS,GACT,YAAY,GACZ,QAAQ,GACR,QAAQ,GACR,SAAS,GACT,mBAAY,CAAC,YAAY,CAAC,KAAK,EAAE,MAAM,CAAC,KAE3C,SAAS,EAAE,KAAK,CAAC,YAAY,EAC7B,GAAG,EAAE,oBAAS,CAAC,MAAM,CAAC,OAAO,CAAC,EAC9B,QAAQ,EAAE,oBAAS,CAAC,MAAM,CAAC,WAAW,CAAC;YAEvC,kEAAkE;YAClE,MAAM,EAAE,oBAAS,CAAC,MAAM,CAAC,IAAA,kBAAU,EAAC,IAAI,YAAY,CAAC,CAAC,CAAC,CAAC,CAAC,EACzD,cAAc,EAAE,oBAAS,CAAC,MAAM,CAAC,cAAc,CAAC,EAChD,uBAAuB,EAAE,oBAAS,CAAC,MAAM,CAAC,uBAAuB,CAAC,EAClE,wBAAwB,EAAE,oBAAS,CAAC,MAAM,CAAC,qBAAI,CAAC,QAAQ,CAAC,uBAAuB,CAAC,CAAC,EAElF,cAAc,EAAE,oBAAS,CAAC,MAAM,CAAC,KAAK,CAAC,aAAa,CAAC,EAErD,YAAY,EAAE,KAAK,CAAC,eAAe,EACnC,SAAS,EAAE,KAAK,CAAC,YAAY,EAC7B,SAAS,EAAE,KAAK,CAAC,YAAY,IAC/B;IACN,CAAC;IAED,SAAS,kBAAkB,CAAC,KAAY,EAAE,KAAiC,EAAE,UAAiB,EAAE,SAAiB,EAAE,SAAyB;QACxI,IAAM,CAAC,GAAG,mBAAY,CAAC,YAAY,CAAC,UAAU,EAAE,SAAS,EAAE,SAAS,CAAC,CAAC;QACtE,IAAM,CAAC,mDAAQ,kCAAE,CAAC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package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts

@@ -41,6 +41,10 @@ export declare namespace Lines {
         lineSizeAttenuation: PD.BooleanParam;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Lines, Params>;

package/lib/commonjs/mol-geo/geometry/lines/lines.js

@@ -23,6 +23,7 @@ var overpaint_data_1 = require("../overpaint-data");
 var transparency_data_1 = require("../transparency-data");
 var util_3 = require("../../../mol-data/util");
 var clipping_data_1 = require("../clipping-data");
+var substance_data_1 = require("../substance-data");
 var Lines;
 (function (Lines) {
     function create(mappings, indices, groups, starts, ends, lineCount, lines) {
@@ -162,11 +163,12 @@ var Lines;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: lines.lineCount * 2 * 3, vertexCount: lines.lineCount * 4, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(lines.boundingSphere);
         var boundingSphere = (0, util_2.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aMapping: lines.mappingBuffer, aGroup: lines.groupBuffer, aStart: lines.startBuffer, aEnd: lines.endBuffer, elements: lines.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dLineSizeAttenuation: mol_util_1.ValueCell.create(props.lineSizeAttenuation), dDoubleSided: mol_util_1.ValueCell.create(true), dFlipSided: mol_util_1.ValueCell.create(false) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aMapping: lines.mappingBuffer, aGroup: lines.groupBuffer, aStart: lines.startBuffer, aEnd: lines.endBuffer, elements: lines.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), size), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { uSizeFactor: mol_util_1.ValueCell.create(props.sizeFactor), dLineSizeAttenuation: mol_util_1.ValueCell.create(props.lineSizeAttenuation), dDoubleSided: mol_util_1.ValueCell.create(true), dFlipSided: mol_util_1.ValueCell.create(false) });
     }
     function createValuesSimple(lines, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/commonjs/mol-geo/geometry/lines/lines.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts

@@ -59,4 +59,5 @@ export declare function getTrilinearlyInterpolated(input: ColorInterpolationInpu
 export declare function applyMeshColorSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
 export declare function applyMeshOverpaintSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
 export declare function applyMeshTransparencySmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
+export declare function applyMeshSubstanceSmoothing(values: MeshValues, resolution: number, stride: number, webgl?: WebGLContext, colorTexture?: Texture): void;
 export {};

package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js

@@ -5,7 +5,7 @@
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.applyMeshTransparencySmoothing = exports.applyMeshOverpaintSmoothing = exports.applyMeshColorSmoothing = exports.getTrilinearlyInterpolated = exports.calcMeshColorSmoothing = void 0;
+exports.applyMeshSubstanceSmoothing = exports.applyMeshTransparencySmoothing = exports.applyMeshOverpaintSmoothing = exports.applyMeshColorSmoothing = exports.getTrilinearlyInterpolated = exports.calcMeshColorSmoothing = void 0;
 var util_1 = require("../../../mol-gl/renderable/util");
 var geometry_1 = require("../../../mol-math/geometry");
 var interpolate_1 = require("../../../mol-math/interpolate");
@@ -288,4 +288,38 @@ function applyMeshTransparencySmoothing(values, resolution, stride, webgl, color
     }
 }
 exports.applyMeshTransparencySmoothing = applyMeshTransparencySmoothing;
+function isSupportedSubstanceType(x) {
+    return x === 'groupInstance';
+}
+function applyMeshSubstanceSmoothing(values, resolution, stride, webgl, colorTexture) {
+    if (!isSupportedSubstanceType(values.dSubstanceType.ref.value))
+        return;
+    var smoothingData = calcMeshColorSmoothing({
+        vertexCount: values.uVertexCount.ref.value,
+        instanceCount: values.uInstanceCount.ref.value,
+        groupCount: values.uGroupCount.ref.value,
+        transformBuffer: values.aTransform.ref.value,
+        instanceBuffer: values.aInstance.ref.value,
+        positionBuffer: values.aPosition.ref.value,
+        groupBuffer: values.aGroup.ref.value,
+        colorData: values.tSubstance.ref.value,
+        colorType: values.dSubstanceType.ref.value,
+        boundingSphere: values.boundingSphere.ref.value,
+        invariantBoundingSphere: values.invariantBoundingSphere.ref.value,
+        itemSize: 3
+    }, resolution, stride, webgl, colorTexture);
+    if (smoothingData.kind === 'volume') {
+        mol_util_1.ValueCell.updateIfChanged(values.dSubstanceType, smoothingData.type);
+        mol_util_1.ValueCell.update(values.tSubstanceGrid, smoothingData.texture);
+        mol_util_1.ValueCell.update(values.uSubstanceTexDim, smoothingData.gridTexDim);
+        mol_util_1.ValueCell.update(values.uSubstanceGridDim, smoothingData.gridDim);
+        mol_util_1.ValueCell.update(values.uSubstanceGridTransform, smoothingData.gridTransform);
+    }
+    else if (smoothingData.kind === 'vertex') {
+        mol_util_1.ValueCell.updateIfChanged(values.dSubstanceType, smoothingData.type);
+        mol_util_1.ValueCell.update(values.tSubstance, smoothingData.texture);
+        mol_util_1.ValueCell.update(values.uSubstanceTexDim, smoothingData.texDim);
+    }
+}
+exports.applyMeshSubstanceSmoothing = applyMeshSubstanceSmoothing;
 //# sourceMappingURL=color-smoothing.js.map

package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts

@@ -64,6 +64,10 @@ export declare namespace Mesh {
         xrayShaded: PD.BooleanParam;
         alpha: PD.Numeric;
         quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+        material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+            metalness: number;
+            roughness: number;
+        }>>;
     };
     type Params = typeof Params;
     const Utils: GeometryUtils<Mesh, Params>;

package/lib/commonjs/mol-geo/geometry/mesh/mesh.js

@@ -24,6 +24,7 @@ var transparency_data_1 = require("../transparency-data");
 var clipping_data_1 = require("../clipping-data");
 var array_1 = require("../../../mol-util/array");
 var misc_1 = require("../../../mol-math/misc");
+var substance_data_1 = require("../substance-data");
 var Mesh;
 (function (Mesh) {
     function create(vertices, indices, normals, groups, vertexCount, triangleCount, mesh) {
@@ -590,11 +591,12 @@ var Mesh;
         var marker = (0, marker_data_1.createMarkers)(instanceCount * groupCount);
         var overpaint = (0, overpaint_data_1.createEmptyOverpaint)();
         var transparency = (0, transparency_data_1.createEmptyTransparency)();
+        var material = (0, substance_data_1.createEmptySubstance)();
         var clipping = (0, clipping_data_1.createEmptyClipping)();
         var counts = { drawCount: mesh.triangleCount * 3, vertexCount: mesh.vertexCount, groupCount: groupCount, instanceCount: instanceCount };
         var invariantBoundingSphere = geometry_1.Sphere3D.clone(mesh.boundingSphere);
         var boundingSphere = (0, util_3.calculateTransformBoundingSphere)(invariantBoundingSphere, transform.aTransform.ref.value, instanceCount);
-        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: mesh.vertexBuffer, aNormal: mesh.normalBuffer, aGroup: mesh.groupBuffer, elements: mesh.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), meta: mol_util_1.ValueCell.create(mesh.meta) });
+        return (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({ aPosition: mesh.vertexBuffer, aNormal: mesh.normalBuffer, aGroup: mesh.groupBuffer, elements: mesh.indexBuffer, boundingSphere: mol_util_1.ValueCell.create(boundingSphere), invariantBoundingSphere: mol_util_1.ValueCell.create(invariantBoundingSphere), uInvariantBoundingSphere: mol_util_1.ValueCell.create(linear_algebra_1.Vec4.ofSphere(invariantBoundingSphere)) }, color), marker), overpaint), transparency), material), clipping), transform), base_1.BaseGeometry.createValues(props, counts)), { dDoubleSided: mol_util_1.ValueCell.create(props.doubleSided), dFlatShaded: mol_util_1.ValueCell.create(props.flatShaded), dFlipSided: mol_util_1.ValueCell.create(props.flipSided), dIgnoreLight: mol_util_1.ValueCell.create(props.ignoreLight), dXrayShaded: mol_util_1.ValueCell.create(props.xrayShaded), meta: mol_util_1.ValueCell.create(mesh.meta) });
     }
     function createValuesSimple(mesh, props, colorValue, sizeValue, transform) {
         var s = base_1.BaseGeometry.createSimple(colorValue, sizeValue, transform);

package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map

@@ -1 +1 @@
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