molstar 2.4.1 → 3.0.0-dev.0

package/lib/mol-repr/shape/loci/dihedral.d.ts

@@ -27,7 +27,7 @@ export declare const DihedralParams: {
     tether: PD.BooleanParam;
     tetherLength: PD.Numeric;
     tetherBaseWidth: PD.Numeric;
-    attachment: PD.Select<"middle-center" | "bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-right" | "top-left" | "top-center" | "top-right">;
+    attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
     fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
     fontQuality: PD.Select<number>;
     fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
@@ -35,6 +35,10 @@ export declare const DihedralParams: {
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
     ignoreLight: PD.BooleanParam;
     sectorOpacity: PD.Numeric;
     color: PD.Color;

package/lib/mol-repr/shape/loci/distance.d.ts

@@ -28,7 +28,7 @@ export declare const DistanceParams: {
     tether: PD.BooleanParam;
     tetherLength: PD.Numeric;
     tetherBaseWidth: PD.Numeric;
-    attachment: PD.Select<"middle-center" | "bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-right" | "top-left" | "top-center" | "top-right">;
+    attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
     fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
     fontQuality: PD.Select<number>;
     fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
@@ -36,6 +36,10 @@ export declare const DistanceParams: {
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
     lineSizeAttenuation: PD.BooleanParam;
     linesColor: PD.Color;
     linesSize: PD.Numeric;

package/lib/mol-repr/shape/loci/label.d.ts

@@ -31,7 +31,7 @@ export declare const LabelParams: {
     tether: PD.BooleanParam;
     tetherLength: PD.Numeric;
     tetherBaseWidth: PD.Numeric;
-    attachment: PD.Select<"middle-center" | "bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-right" | "top-left" | "top-center" | "top-right">;
+    attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
     fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
     fontQuality: PD.Select<number>;
     fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
@@ -39,6 +39,10 @@ export declare const LabelParams: {
     fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type LabelParams = typeof LabelParams;
 export declare type LabelProps = PD.Values<LabelParams>;

package/lib/mol-repr/shape/loci/orientation.d.ts

@@ -21,6 +21,10 @@ export declare const OrientationParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type OrientationParams = typeof OrientationParams;
 export declare type OrientationProps = PD.Values<OrientationParams>;

package/lib/mol-repr/shape/loci/plane.d.ts

@@ -20,6 +20,10 @@ export declare const PlaneParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type PlaneParams = typeof PlaneParams;
 export declare type PlaneProps = PD.Values<PlaneParams>;

package/lib/mol-repr/shape/model/unitcell.d.ts

@@ -23,6 +23,10 @@ export declare const UnitcellParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type UnitcellParams = typeof UnitcellParams;
 export declare type UnitcellProps = PD.Values<UnitcellParams>;

package/lib/mol-repr/shape/representation.js

@@ -220,6 +220,9 @@ export function ShapeRepresentation(getShape, geometryUtils, builder) {
                 if (state.transparency !== undefined) {
                     Visual.setTransparency(_renderObject, state.transparency, lociApply, true);
                 }
+                if (state.substance !== undefined) {
+                    Visual.setSubstance(_renderObject, state.substance, lociApply, true);
+                }
                 if (state.transform !== undefined)
                     Visual.setTransform(_renderObject, state.transform);
             }

package/lib/mol-repr/shape/representation.js.map

@@ -1 +1 @@
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package/lib/mol-repr/structure/complex-representation.js

@@ -18,6 +18,7 @@ import { MarkerActions } from '../../mol-util/marker-action';
 import { Overpaint } from '../../mol-theme/overpaint';
 import { Clipping } from '../../mol-theme/clipping';
 import { Transparency } from '../../mol-theme/transparency';
+import { Substance } from '../../mol-theme/substance';
 export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
     var version = 0;
     var webgl = ctx.webgl;
@@ -128,6 +129,11 @@ export function ComplexRepresentation(label, ctx, getParams, visualCtor) {
             var remappedTransparency = Transparency.remap(state.transparency, _structure);
             visual.setTransparency(remappedTransparency, webgl);
         }
+        if (state.substance !== undefined && visual) {
+            // Remap loci from equivalent structure to the current structure
+            var remappedSubstance = Substance.remap(state.substance, _structure);
+            visual.setSubstance(remappedSubstance, webgl);
+        }
         if (state.clipping !== undefined && visual) {
             // Remap loci from equivalent structure to the current structure
             var remappedClipping = Clipping.remap(state.clipping, _structure);

package/lib/mol-repr/structure/complex-representation.js.map

@@ -1 +1 @@
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package/lib/mol-repr/structure/complex-visual.d.ts

@@ -49,6 +49,10 @@ export declare const ComplexMeshParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexMeshParams = typeof ComplexMeshParams;
 export interface ComplexMeshVisualBuilder<P extends ComplexMeshParams> extends ComplexVisualBuilder<P, Mesh> {
@@ -64,6 +68,10 @@ export declare const ComplexCylindersParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexCylindersParams = typeof ComplexCylindersParams;
 export interface ComplexCylindersVisualBuilder<P extends ComplexCylindersParams> extends ComplexVisualBuilder<P, Cylinders> {
@@ -76,6 +84,10 @@ export declare const ComplexLinesParams: {
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexLinesParams = typeof ComplexLinesParams;
 export interface ComplexLinesVisualBuilder<P extends ComplexLinesParams> extends ComplexVisualBuilder<P, Lines> {
@@ -97,7 +109,7 @@ export declare const ComplexTextParams: {
     tether: PD.BooleanParam;
     tetherLength: PD.Numeric;
     tetherBaseWidth: PD.Numeric;
-    attachment: PD.Select<"middle-center" | "bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-right" | "top-left" | "top-center" | "top-right">;
+    attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
     fontFamily: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontFamily>;
     fontQuality: PD.Select<number>;
     fontStyle: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontStyle>;
@@ -105,6 +117,10 @@ export declare const ComplexTextParams: {
     fontWeight: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexTextParams = typeof ComplexTextParams;
 export interface ComplexTextVisualBuilder<P extends ComplexTextParams> extends ComplexVisualBuilder<P, Text> {
@@ -138,6 +154,10 @@ export declare const ComplexDirectVolumeParams: {
     jumpLength: PD.Numeric;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexDirectVolumeParams = typeof ComplexDirectVolumeParams;
 export interface ComplexDirectVolumeVisualBuilder<P extends ComplexDirectVolumeParams> extends ComplexVisualBuilder<P, DirectVolume> {
@@ -153,6 +173,10 @@ export declare const ComplexTextureMeshParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type ComplexTextureMeshParams = typeof ComplexTextureMeshParams;
 export interface ComplexTextureMeshVisualBuilder<P extends ComplexTextureMeshParams> extends ComplexVisualBuilder<P, TextureMesh> {

package/lib/mol-repr/structure/complex-visual.js

@@ -219,6 +219,10 @@ export function ComplexVisual(builder, materialId) {
             var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
             Visual.setTransparency(renderObject, transparency, lociApply, true, smoothing);
         },
+        setSubstance: function (substance, webgl) {
+            var smoothing = { geometry: geometry, props: currentProps, webgl: webgl };
+            Visual.setSubstance(renderObject, substance, lociApply, true, smoothing);
+        },
         setClipping: function (clipping) {
             Visual.setClipping(renderObject, clipping, lociApply, true);
         },

package/lib/mol-repr/structure/complex-visual.js.map

@@ -1 +1 @@
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package/lib/mol-repr/structure/params.d.ts

@@ -20,6 +20,10 @@ export declare const StructureMeshParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureMeshParams = typeof StructureMeshParams;
 export declare const StructureSpheresParams: {
@@ -29,6 +33,10 @@ export declare const StructureSpheresParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureSpheresParams = typeof StructureSpheresParams;
 export declare const StructureCylindersParams: {
@@ -39,6 +47,10 @@ export declare const StructureCylindersParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureCylindersParams = typeof StructureCylindersParams;
 export declare const StructurePointsParams: {
@@ -47,6 +59,10 @@ export declare const StructurePointsParams: {
     pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructurePointsParams = typeof StructurePointsParams;
 export declare const StructureLinesParams: {
@@ -54,6 +70,10 @@ export declare const StructureLinesParams: {
     lineSizeAttenuation: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureLinesParams = typeof StructureLinesParams;
 export declare const StructureTextParams: {
@@ -70,7 +90,7 @@ export declare const StructureTextParams: {
     tether: PD.BooleanParam;
     tetherLength: PD.Numeric;
     tetherBaseWidth: PD.Numeric;
-    attachment: PD.Select<"middle-center" | "bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-right" | "top-left" | "top-center" | "top-right">;
+    attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
     fontFamily: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontFamily>;
     fontQuality: PD.Select<number>;
     fontStyle: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontStyle>;
@@ -78,6 +98,10 @@ export declare const StructureTextParams: {
     fontWeight: PD.Select<import("../../mol-geo/geometry/text/font-atlas").FontWeight>;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureTextParams = typeof StructureTextParams;
 export declare const StructureDirectVolumeParams: {
@@ -106,6 +130,10 @@ export declare const StructureDirectVolumeParams: {
     jumpLength: PD.Numeric;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureDirectVolumeParams = typeof StructureDirectVolumeParams;
 export declare const StructureTextureMeshParams: {
@@ -116,5 +144,9 @@ export declare const StructureTextureMeshParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
+    material: PD.Converted<import("../../mol-util/material").Material, PD.Normalize<{
+        metalness: number;
+        roughness: number;
+    }>>;
 };
 export declare type StructureTextureMeshParams = typeof StructureTextureMeshParams;