molstar 2.3.9 → 3.0.0-dev.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (3317) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +187 -176
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +94 -94
  5. package/build/viewer/molstar.js +1 -1
  6. package/lib/apps/docking-viewer/index.html +36 -36
  7. package/lib/apps/docking-viewer/viewport.d.ts +2 -2
  8. package/lib/apps/docking-viewer/viewport.js +16 -14
  9. package/lib/apps/viewer/embedded.html +43 -43
  10. package/lib/apps/viewer/index.html +94 -94
  11. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  12. package/lib/cli/cifschema/util/cif-dic.js +1 -0
  13. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  14. package/lib/commonjs/apps/docking-viewer/viewport.js +16 -14
  15. package/lib/commonjs/apps/viewer/index.d.ts +1 -1
  16. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  17. package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
  18. package/lib/commonjs/extensions/anvil/behavior.d.ts +6 -2
  19. package/lib/commonjs/extensions/anvil/representation.d.ts +25 -5
  20. package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
  21. package/lib/commonjs/extensions/cellpack/representation.d.ts +6 -2
  22. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  23. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +18 -6
  24. package/lib/commonjs/extensions/geo-export/controls.js +16 -18
  25. package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +5 -3
  26. package/lib/commonjs/extensions/geo-export/glb-exporter.js +49 -27
  27. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
  28. package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
  29. package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
  30. package/lib/commonjs/extensions/geo-export/obj-exporter.js +24 -15
  31. package/lib/commonjs/extensions/geo-export/ui.js +24 -20
  32. package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +3 -5
  33. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +39 -30
  34. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  35. package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
  36. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +10 -6
  37. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  38. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +5 -1
  39. package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
  40. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  41. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +30 -10
  42. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +18 -14
  43. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -3
  44. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +5 -1
  45. package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
  46. package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
  47. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +3 -2
  48. package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
  49. package/lib/commonjs/mol-geo/geometry/base.d.ts +26 -6
  50. package/lib/commonjs/mol-geo/geometry/base.js +49 -6
  51. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +5 -1
  52. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -1
  53. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +7 -3
  54. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -3
  55. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +5 -1
  56. package/lib/commonjs/mol-geo/geometry/image/image.js +3 -1
  57. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +5 -1
  58. package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -1
  59. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +18 -8
  60. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +10 -2
  61. package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +188 -35
  62. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +5 -1
  63. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -1
  64. package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
  65. package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
  66. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +7 -3
  67. package/lib/commonjs/mol-geo/geometry/points/points.js +3 -1
  68. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +5 -2
  69. package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -1
  70. package/lib/commonjs/mol-geo/geometry/substance-data.d.ts +23 -0
  71. package/lib/commonjs/mol-geo/geometry/substance-data.js +68 -0
  72. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +5 -1
  73. package/lib/commonjs/mol-geo/geometry/text/text.js +3 -1
  74. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +8 -3
  75. package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +194 -27
  76. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +8 -2
  77. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -1
  78. package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
  79. package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
  80. package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
  81. package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
  82. package/lib/commonjs/mol-gl/compute/util.js +76 -21
  83. package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +18 -0
  84. package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +18 -0
  85. package/lib/commonjs/mol-gl/renderable/image.d.ts +18 -0
  86. package/lib/commonjs/mol-gl/renderable/lines.d.ts +18 -0
  87. package/lib/commonjs/mol-gl/renderable/mesh.d.ts +18 -0
  88. package/lib/commonjs/mol-gl/renderable/points.d.ts +18 -0
  89. package/lib/commonjs/mol-gl/renderable/points.js +1 -2
  90. package/lib/commonjs/mol-gl/renderable/schema.d.ts +40 -5
  91. package/lib/commonjs/mol-gl/renderable/schema.js +23 -11
  92. package/lib/commonjs/mol-gl/renderable/spheres.d.ts +18 -0
  93. package/lib/commonjs/mol-gl/renderable/text.d.ts +18 -0
  94. package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +32 -13
  95. package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
  96. package/lib/commonjs/mol-gl/renderer.d.ts +9 -15
  97. package/lib/commonjs/mol-gl/renderer.js +56 -61
  98. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +3 -3
  99. package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +3 -3
  100. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
  101. package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
  102. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  103. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  104. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
  105. package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
  106. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
  107. package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
  108. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +1 -1
  109. package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +1 -1
  110. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +3 -3
  111. package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +3 -3
  112. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
  113. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
  114. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
  115. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
  116. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
  117. package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
  118. package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
  119. package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
  120. package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
  121. package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
  122. package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
  123. package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
  124. package/lib/commonjs/mol-gl/shader-code.d.ts +0 -1
  125. package/lib/commonjs/mol-gl/shader-code.js +31 -13
  126. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  127. package/lib/commonjs/mol-gl/webgl/extensions.js +3 -9
  128. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  129. package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +3 -2
  130. package/lib/commonjs/mol-gl/webgl/vertex-array.js +9 -2
  131. package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +2 -2
  132. package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
  133. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +3 -3
  134. package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
  135. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
  136. package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +15 -5
  137. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
  138. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  139. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +15 -15
  140. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
  141. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  142. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
  143. package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +91 -0
  144. package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +1 -1
  145. package/lib/commonjs/mol-io/reader/sdf/parser.js +12 -4
  146. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
  147. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +9 -0
  148. package/lib/commonjs/mol-model/loci.d.ts +30 -30
  149. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  150. package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +54 -5
  151. package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
  152. package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
  153. package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
  154. package/lib/commonjs/mol-model-formats/shape/ply.d.ts +14 -6
  155. package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
  156. package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
  157. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
  158. package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
  159. package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +6 -2
  160. package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +6 -2
  161. package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +18 -6
  162. package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +24 -8
  163. package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
  164. package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
  165. package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
  166. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +5 -1
  167. package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +4 -2
  168. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
  169. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
  170. package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +3 -3
  171. package/lib/commonjs/mol-plugin/commands.d.ts +13 -7
  172. package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
  173. package/lib/commonjs/mol-plugin/spec.js +1 -0
  174. package/lib/commonjs/mol-plugin/state.d.ts +8 -0
  175. package/lib/commonjs/mol-plugin/state.js +27 -17
  176. package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -9
  177. package/lib/commonjs/mol-plugin-state/actions/file.js +4 -2
  178. package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -1
  179. package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
  180. package/lib/commonjs/mol-plugin-state/animation/helpers.d.ts +5 -5
  181. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +3 -3
  182. package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +3 -3
  183. package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +21 -21
  184. package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
  185. package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +6 -6
  186. package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -0
  187. package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +3 -3
  188. package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
  189. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
  190. package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +14 -3
  191. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.d.ts +13 -0
  192. package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +126 -0
  193. package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
  194. package/lib/commonjs/mol-plugin-state/manager/snapshots.js +2 -1
  195. package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +11 -2
  196. package/lib/commonjs/mol-plugin-state/manager/structure/component.js +44 -22
  197. package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
  198. package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
  199. package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +5 -5
  200. package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +75 -19
  201. package/lib/commonjs/mol-plugin-state/transforms/representation.js +160 -15
  202. package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +6 -0
  203. package/lib/commonjs/mol-plugin-ui/controls/parameters.js +15 -3
  204. package/lib/commonjs/mol-plugin-ui/state/common.js +10 -9
  205. package/lib/commonjs/mol-plugin-ui/state/snapshots.js +10 -8
  206. package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
  207. package/lib/commonjs/mol-plugin-ui/structure/selection.js +2 -1
  208. package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -5
  209. package/lib/commonjs/mol-repr/representation.d.ts +12 -0
  210. package/lib/commonjs/mol-repr/representation.js +50 -5
  211. package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +6 -2
  212. package/lib/commonjs/mol-repr/shape/loci/common.d.ts +6 -2
  213. package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +6 -2
  214. package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +6 -2
  215. package/lib/commonjs/mol-repr/shape/loci/label.d.ts +6 -2
  216. package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -2
  217. package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +5 -1
  218. package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +6 -2
  219. package/lib/commonjs/mol-repr/shape/representation.js +8 -0
  220. package/lib/commonjs/mol-repr/structure/complex-representation.js +17 -4
  221. package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +38 -14
  222. package/lib/commonjs/mol-repr/structure/complex-visual.js +15 -5
  223. package/lib/commonjs/mol-repr/structure/params.d.ts +45 -13
  224. package/lib/commonjs/mol-repr/structure/registry.d.ts +96 -40
  225. package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +18 -6
  226. package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +21 -9
  227. package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +18 -6
  228. package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +18 -6
  229. package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +21 -9
  230. package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +24 -12
  231. package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +21 -9
  232. package/lib/commonjs/mol-repr/structure/representation/label.d.ts +24 -12
  233. package/lib/commonjs/mol-repr/structure/representation/line.d.ts +24 -12
  234. package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +24 -12
  235. package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +18 -6
  236. package/lib/commonjs/mol-repr/structure/representation/point.d.ts +21 -9
  237. package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +18 -6
  238. package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +18 -6
  239. package/lib/commonjs/mol-repr/structure/units-representation.js +23 -17
  240. package/lib/commonjs/mol-repr/structure/units-visual.d.ts +51 -19
  241. package/lib/commonjs/mol-repr/structure/units-visual.js +15 -5
  242. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +14 -6
  243. package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +7 -3
  244. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +14 -6
  245. package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +7 -3
  246. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +6 -2
  247. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +6 -2
  248. package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +6 -2
  249. package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +6 -2
  250. package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +7 -3
  251. package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +12 -4
  252. package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +6 -2
  253. package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +14 -6
  254. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +32 -16
  255. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +14 -12
  256. package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +6 -2
  257. package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +8 -4
  258. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +8 -4
  259. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +5 -4
  260. package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +6 -2
  261. package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +6 -2
  262. package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +6 -2
  263. package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +6 -2
  264. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +12 -4
  265. package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +12 -4
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package/lib/commonjs/mol-math/geometry/gaussian-density.js.map DELETED
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package/lib/commonjs/mol-math/geometry/molecular-surface.js.map DELETED
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package/lib/commonjs/mol-math/geometry/primitives/axes3d.js.map DELETED
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package/lib/commonjs/mol-math/geometry/spacegroup/cell.js.map DELETED
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package/lib/commonjs/mol-math/geometry/symmetry-operator.js.map DELETED
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package/lib/commonjs/mol-math/geometry.js.map DELETED
@@ -1 +0,0 @@
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- {"version":3,"file":"geometry.js","sourceRoot":"","sources":["../../../src/mol-math/geometry.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,iEAAkC;AAClC,4EAA6C;AAC7C,kFAAmD;AACnD,0EAA2C;AAC3C,wEAAyC;AACzC,2EAA4C;AAC5C,8EAA+C;AAC/C,4EAA6C"}
package/lib/commonjs/mol-math/graph/_spec/int-graph.spec.d.ts DELETED
@@ -1,6 +0,0 @@
1
- /**
2
- * Copyright (c) 2017-2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
3
- *
4
- * @author David Sehnal <david.sehnal@gmail.com>
5
- */
6
- export {};
package/lib/commonjs/mol-math/graph/_spec/int-graph.spec.js DELETED
@@ -1,40 +0,0 @@
1
- "use strict";
2
- /**
3
- * Copyright (c) 2017-2018 mol* contributors, licensed under MIT, See LICENSE file for more info.
4
- *
5
- * @author David Sehnal <david.sehnal@gmail.com>
6
- */
7
- Object.defineProperty(exports, "__esModule", { value: true });
8
- var int_adjacency_graph_1 = require("../int-adjacency-graph");
9
- describe('IntGraph', function () {
10
- var vc = 3;
11
- var xs = [0, 1, 2];
12
- var ys = [1, 2, 0];
13
- var _prop = [10, 11, 12];
14
- var builder = new int_adjacency_graph_1.IntAdjacencyGraph.EdgeBuilder(vc, xs, ys);
15
- var prop = new Array(builder.slotCount);
16
- for (var i = 0; i < builder.edgeCount; i++) {
17
- builder.addNextEdge();
18
- builder.assignProperty(prop, _prop[i]);
19
- }
20
- var graph = builder.createGraph({ prop: prop });
21
- it('triangle-edgeCount', function () { return expect(graph.edgeCount).toBe(3); });
22
- it('triangle-vertexEdgeCounts', function () {
23
- expect(graph.getVertexEdgeCount(0)).toBe(2);
24
- expect(graph.getVertexEdgeCount(1)).toBe(2);
25
- expect(graph.getVertexEdgeCount(2)).toBe(2);
26
- });
27
- it('triangle-propAndEdgeIndex', function () {
28
- var prop = graph.edgeProps.prop;
29
- expect(prop[graph.getEdgeIndex(0, 1)]).toBe(10);
30
- expect(prop[graph.getEdgeIndex(1, 2)]).toBe(11);
31
- expect(prop[graph.getEdgeIndex(2, 0)]).toBe(12);
32
- });
33
- it('induce', function () {
34
- var induced = int_adjacency_graph_1.IntAdjacencyGraph.induceByVertices(graph, [1, 2]);
35
- expect(induced.vertexCount).toBe(2);
36
- expect(induced.edgeCount).toBe(1);
37
- expect(induced.edgeProps.prop[induced.getEdgeIndex(0, 1)]).toBe(11);
38
- });
39
- });
40
- //# sourceMappingURL=int-graph.spec.js.map
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package/lib/commonjs/mol-math/graph/int-adjacency-graph.js.map DELETED
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