molstar 2.3.9 → 3.0.0-dev.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/LICENSE +20 -20
- package/README.md +187 -176
- package/build/viewer/embedded.html +43 -43
- package/build/viewer/index.html +94 -94
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.html +36 -36
- package/lib/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/apps/docking-viewer/viewport.js +16 -14
- package/lib/apps/viewer/embedded.html +43 -43
- package/lib/apps/viewer/index.html +94 -94
- package/lib/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/docking-viewer/viewport.js +16 -14
- package/lib/commonjs/apps/viewer/index.d.ts +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +1 -0
- package/lib/commonjs/extensions/anvil/behavior.d.ts +6 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +25 -5
- package/lib/commonjs/extensions/cellpack/model.d.ts +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +6 -2
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +18 -6
- package/lib/commonjs/extensions/geo-export/controls.js +16 -18
- package/lib/commonjs/extensions/geo-export/glb-exporter.d.ts +5 -3
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +49 -27
- package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +31 -2
- package/lib/commonjs/extensions/geo-export/mesh-exporter.js +87 -15
- package/lib/commonjs/extensions/geo-export/obj-exporter.d.ts +1 -0
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +24 -15
- package/lib/commonjs/extensions/geo-export/ui.js +24 -20
- package/lib/commonjs/extensions/geo-export/usdz-exporter.d.ts +3 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +39 -30
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/ui.js +7 -6
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +10 -6
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +5 -1
- package/lib/commonjs/extensions/rcsb/graphql/types.d.ts +22 -21
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +30 -10
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +18 -14
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +7 -3
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +5 -1
- package/lib/commonjs/mol-canvas3d/helper/helper.d.ts +2 -0
- package/lib/commonjs/mol-canvas3d/passes/draw.js +3 -11
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +3 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +26 -6
- package/lib/commonjs/mol-geo/geometry/base.js +49 -6
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +5 -1
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.js +3 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +7 -3
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +4 -3
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +5 -1
- package/lib/commonjs/mol-geo/geometry/image/image.js +3 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +5 -1
- package/lib/commonjs/mol-geo/geometry/lines/lines.js +3 -1
- package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +18 -8
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.d.ts +10 -2
- package/lib/commonjs/mol-geo/geometry/mesh/color-smoothing.js +188 -35
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +5 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +3 -1
- package/lib/commonjs/mol-geo/geometry/overpaint-data.d.ts +7 -2
- package/lib/commonjs/mol-geo/geometry/overpaint-data.js +10 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +7 -3
- package/lib/commonjs/mol-geo/geometry/points/points.js +3 -1
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +5 -2
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.js +3 -1
- package/lib/commonjs/mol-geo/geometry/substance-data.d.ts +23 -0
- package/lib/commonjs/mol-geo/geometry/substance-data.js +68 -0
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +5 -1
- package/lib/commonjs/mol-geo/geometry/text/text.js +3 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.d.ts +8 -3
- package/lib/commonjs/mol-geo/geometry/texture-mesh/color-smoothing.js +194 -27
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +8 -2
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +4 -1
- package/lib/commonjs/mol-geo/geometry/transparency-data.d.ts +7 -2
- package/lib/commonjs/mol-geo/geometry/transparency-data.js +10 -1
- package/lib/commonjs/mol-gl/compute/marching-cubes/isosurface.js +3 -3
- package/lib/commonjs/mol-gl/compute/util.d.ts +25 -6
- package/lib/commonjs/mol-gl/compute/util.js +76 -21
- package/lib/commonjs/mol-gl/renderable/cylinders.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/direct-volume.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/image.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/lines.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/mesh.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/points.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/points.js +1 -2
- package/lib/commonjs/mol-gl/renderable/schema.d.ts +40 -5
- package/lib/commonjs/mol-gl/renderable/schema.js +23 -11
- package/lib/commonjs/mol-gl/renderable/spheres.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/text.d.ts +18 -0
- package/lib/commonjs/mol-gl/renderable/texture-mesh.d.ts +32 -13
- package/lib/commonjs/mol-gl/renderable/texture-mesh.js +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +9 -15
- package/lib/commonjs/mol-gl/renderer.js +56 -61
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.d.ts +3 -3
- package/lib/commonjs/mol-gl/shader/chunks/apply-light-color.glsl.js +3 -3
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-color-varying.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-frag-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/color-vert-params.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/common-clip.glsl.js +1 -1
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.d.ts +3 -3
- package/lib/commonjs/mol-gl/shader/chunks/light-frag-params.glsl.js +3 -3
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/accumulate.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/compute/color-smoothing/normalize.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/direct-volume.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.frag.js +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.d.ts +1 -1
- package/lib/commonjs/mol-gl/shader/mesh.vert.js +1 -1
- package/lib/commonjs/mol-gl/shader-code.d.ts +0 -1
- package/lib/commonjs/mol-gl/shader-code.js +31 -13
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/extensions.js +3 -9
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/vertex-array.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/vertex-array.js +9 -2
- package/lib/commonjs/mol-io/reader/cif/schema/bird.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/bird.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.d.ts +8 -5
- package/lib/commonjs/mol-io/reader/cif/schema/cif-core.js +15 -5
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +15 -15
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.d.ts +9 -0
- package/lib/commonjs/mol-io/reader/sdf/parser-v3-util.js +91 -0
- package/lib/commonjs/mol-io/reader/sdf/parser.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/sdf/parser.js +12 -4
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.d.ts +6 -0
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +9 -0
- package/lib/commonjs/mol-model/loci.d.ts +30 -30
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/query/utils/structure-distance.d.ts +54 -5
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/properties.js +5 -5
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +2 -2
- package/lib/commonjs/mol-model-formats/shape/ply.d.ts +14 -6
- package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts +6 -6
- package/lib/commonjs/mol-model-formats/structure/common/component.d.ts +8 -8
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.d.ts +1 -1
- package/lib/commonjs/mol-model-props/computed/interactions/hydrogen-bonds.js +1 -7
- package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts +6 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts +6 -2
- package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts +18 -6
- package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts +24 -8
- package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts +12 -12
- package/lib/commonjs/mol-plugin/behavior/behavior.d.ts +1 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts +5 -1
- package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js +4 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts +2 -2
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts +2 -3
- package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts +3 -3
- package/lib/commonjs/mol-plugin/commands.d.ts +13 -7
- package/lib/commonjs/mol-plugin/layout.d.ts +4 -4
- package/lib/commonjs/mol-plugin/spec.js +1 -0
- package/lib/commonjs/mol-plugin/state.d.ts +8 -0
- package/lib/commonjs/mol-plugin/state.js +27 -17
- package/lib/commonjs/mol-plugin/util/viewport-screenshot.d.ts +21 -9
- package/lib/commonjs/mol-plugin-state/actions/file.js +4 -2
- package/lib/commonjs/mol-plugin-state/actions/structure.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/animation/built-in/model-index.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/animation/helpers.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy-preset.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/builder/structure/hierarchy.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/builder/structure/representation-preset.d.ts +21 -21
- package/lib/commonjs/mol-plugin-state/builder/structure/representation.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/formats/volume.d.ts +6 -6
- package/lib/commonjs/mol-plugin-state/formats/volume.js +1 -0
- package/lib/commonjs/mol-plugin-state/helpers/root-structure.d.ts +3 -3
- package/lib/commonjs/mol-plugin-state/helpers/structure-component.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/helpers/structure-selection-query.js +14 -3
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.d.ts +13 -0
- package/lib/commonjs/mol-plugin-state/helpers/structure-substance.js +126 -0
- package/lib/commonjs/mol-plugin-state/manager/interactivity.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/manager/snapshots.js +2 -1
- package/lib/commonjs/mol-plugin-state/manager/structure/component.d.ts +11 -2
- package/lib/commonjs/mol-plugin-state/manager/structure/component.js +44 -22
- package/lib/commonjs/mol-plugin-state/manager/structure/selection.d.ts +2 -2
- package/lib/commonjs/mol-plugin-state/transforms/data.d.ts +1 -1
- package/lib/commonjs/mol-plugin-state/transforms/model.d.ts +5 -5
- package/lib/commonjs/mol-plugin-state/transforms/representation.d.ts +75 -19
- package/lib/commonjs/mol-plugin-state/transforms/representation.js +160 -15
- package/lib/commonjs/mol-plugin-ui/controls/parameters.d.ts +6 -0
- package/lib/commonjs/mol-plugin-ui/controls/parameters.js +15 -3
- package/lib/commonjs/mol-plugin-ui/state/common.js +10 -9
- package/lib/commonjs/mol-plugin-ui/state/snapshots.js +10 -8
- package/lib/commonjs/mol-plugin-ui/structure/measurements.d.ts +1 -1
- package/lib/commonjs/mol-plugin-ui/structure/selection.js +2 -1
- package/lib/commonjs/mol-plugin-ui/viewport/simple-settings.js +2 -5
- package/lib/commonjs/mol-repr/representation.d.ts +12 -0
- package/lib/commonjs/mol-repr/representation.js +50 -5
- package/lib/commonjs/mol-repr/shape/loci/angle.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/common.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/dihedral.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/distance.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/label.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/orientation.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/loci/plane.d.ts +5 -1
- package/lib/commonjs/mol-repr/shape/model/unitcell.d.ts +6 -2
- package/lib/commonjs/mol-repr/shape/representation.js +8 -0
- package/lib/commonjs/mol-repr/structure/complex-representation.js +17 -4
- package/lib/commonjs/mol-repr/structure/complex-visual.d.ts +38 -14
- package/lib/commonjs/mol-repr/structure/complex-visual.js +15 -5
- package/lib/commonjs/mol-repr/structure/params.d.ts +45 -13
- package/lib/commonjs/mol-repr/structure/registry.d.ts +96 -40
- package/lib/commonjs/mol-repr/structure/representation/backbone.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/ball-and-stick.d.ts +21 -9
- package/lib/commonjs/mol-repr/structure/representation/carbohydrate.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/cartoon.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/ellipsoid.d.ts +21 -9
- package/lib/commonjs/mol-repr/structure/representation/gaussian-surface.d.ts +24 -12
- package/lib/commonjs/mol-repr/structure/representation/gaussian-volume.d.ts +21 -9
- package/lib/commonjs/mol-repr/structure/representation/label.d.ts +24 -12
- package/lib/commonjs/mol-repr/structure/representation/line.d.ts +24 -12
- package/lib/commonjs/mol-repr/structure/representation/molecular-surface.d.ts +24 -12
- package/lib/commonjs/mol-repr/structure/representation/orientation.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/point.d.ts +21 -9
- package/lib/commonjs/mol-repr/structure/representation/putty.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/representation/spacefill.d.ts +18 -6
- package/lib/commonjs/mol-repr/structure/units-representation.js +23 -17
- package/lib/commonjs/mol-repr/structure/units-visual.d.ts +51 -19
- package/lib/commonjs/mol-repr/structure/units-visual.js +15 -5
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-cylinder.d.ts +14 -6
- package/lib/commonjs/mol-repr/structure/visual/bond-inter-unit-line.d.ts +7 -3
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-cylinder.d.ts +14 -6
- package/lib/commonjs/mol-repr/structure/visual/bond-intra-unit-line.d.ts +7 -3
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-link-cylinder.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-symbol-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/carbohydrate-terminal-link-cylinder.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/element-cross.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/element-point.d.ts +7 -3
- package/lib/commonjs/mol-repr/structure/visual/element-sphere.d.ts +12 -4
- package/lib/commonjs/mol-repr/structure/visual/ellipsoid-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/gaussian-density-volume.d.ts +14 -6
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.d.ts +32 -16
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-mesh.js +14 -12
- package/lib/commonjs/mol-repr/structure/visual/gaussian-surface-wireframe.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/label-text.d.ts +8 -4
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.d.ts +8 -4
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-mesh.js +5 -4
- package/lib/commonjs/mol-repr/structure/visual/molecular-surface-wireframe.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-block-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/nucleotide-ring-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/orientation-ellipsoid-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-cylinder.d.ts +12 -4
- package/lib/commonjs/mol-repr/structure/visual/polymer-backbone-sphere.d.ts +12 -4
- package/lib/commonjs/mol-repr/structure/visual/polymer-direction-wedge.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-gap-cylinder.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-trace-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/polymer-tube-mesh.d.ts +6 -2
- package/lib/commonjs/mol-repr/structure/visual/util/bond.d.ts +10 -10
- package/lib/commonjs/mol-repr/structure/visual/util/common.d.ts +2 -2
- package/lib/commonjs/mol-repr/structure/visual/util/element.d.ts +4 -4
- package/lib/commonjs/mol-repr/structure/visual/util/polymer.d.ts +2 -2
- package/lib/commonjs/mol-repr/visual.d.ts +24 -13
- package/lib/commonjs/mol-repr/visual.js +106 -8
- package/lib/commonjs/mol-repr/volume/direct-volume.d.ts +21 -9
- package/lib/commonjs/mol-repr/volume/isosurface.d.ts +36 -12
- package/lib/commonjs/mol-repr/volume/registry.d.ts +19 -7
- package/lib/commonjs/mol-repr/volume/representation.d.ts +6 -2
- package/lib/commonjs/mol-repr/volume/representation.js +15 -3
- package/lib/commonjs/mol-repr/volume/slice.d.ts +18 -6
- package/lib/commonjs/mol-script/language/builder.d.ts +1 -0
- package/lib/commonjs/mol-state/state.js +7 -5
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$msp-btn-remove-background: #BF3A31;
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$msp-btn-commit-on-font-color: #ffffff;
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// used in LOG
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@return lighten($color, $amount);
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$default-background: #2D3E50;
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$font-color: #EDF1F2;
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$hover-font-color: #3B9AD9;
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$entity-current-font-color: #FFFFFF;
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$msp-btn-remove-background: #BF3A31;
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$msp-btn-remove-hover-font-color:#ffffff;
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$msp-btn-commit-on-font-color: #ffffff;
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$entity-badge-font-color: #ccd4e0;
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// used in LOG
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$log-message: #0CCA5D;
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$log-info: #5E3673;
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}
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@function color-increase-contrast($color, $amount) {
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@return lighten($color, $amount);
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}
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@@ -1,24 +1,24 @@
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-
$default-background: #111318;
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$font-color: #ccd4e0;
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$hover-font-color: #51A2FB;
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$entity-current-font-color: #68BEFD;
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$msp-btn-remove-background: #DE0A28;
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-
$msp-btn-remove-hover-font-color:#F2F4F7;
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-
$msp-btn-commit-on-font-color: #68BEFD;
|
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-
$entity-badge-font-color: #ccd4e0;
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-
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-
// used in LOG
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$log-message: #0CCA5D;
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$log-info: #5E3673;
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$log-warning: #FCC937;
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$log-error: #FD354B;
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@function color-lower-contrast($color, $amount) {
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@return darken($color, $amount);
|
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}
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@function color-increase-contrast($color, $amount) {
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@return lighten($color, $amount);
|
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+
$default-background: #111318;
|
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$font-color: #ccd4e0;
|
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|
+
$hover-font-color: #51A2FB;
|
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|
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$entity-current-font-color: #68BEFD;
|
|
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|
+
$msp-btn-remove-background: #DE0A28;
|
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|
+
$msp-btn-remove-hover-font-color:#F2F4F7;
|
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|
+
$msp-btn-commit-on-font-color: #68BEFD;
|
|
8
|
+
$entity-badge-font-color: #ccd4e0;
|
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|
+
|
|
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|
+
// used in LOG
|
|
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|
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$log-message: #0CCA5D;
|
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$log-info: #5E3673;
|
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$log-warning: #FCC937;
|
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$log-error: #FD354B;
|
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+
|
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+
$logo-background: rgba(0,0,0,0.75);
|
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|
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@function color-lower-contrast($color, $amount) {
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@return darken($color, $amount);
|
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}
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|
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@function color-increase-contrast($color, $amount) {
|
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@return lighten($color, $amount);
|
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|
}
|
|
@@ -1,30 +1,30 @@
|
|
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1
|
-
// this is complement of the dark theme
|
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2
|
-
|
|
3
|
-
@function compl($color) {
|
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4
|
-
@return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
|
|
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|
-
}
|
|
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|
-
|
|
7
|
-
$default-background: compl(#111318);
|
|
8
|
-
$font-color: compl(#ccd4e0);
|
|
9
|
-
$hover-font-color: compl(#51A2FB);
|
|
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|
-
$entity-current-font-color: compl(#68BEFD);
|
|
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|
-
$msp-btn-commit-on-font-color: compl(#68BEFD);
|
|
12
|
-
$entity-badge-font-color: lighten(#ccd4e0,10%);
|
|
13
|
-
$msp-btn-remove-background: #DE0A28;
|
|
14
|
-
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
15
|
-
|
|
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|
-
// used in LOG
|
|
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|
-
$log-message: #0CCA5D;
|
|
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|
-
$log-info: #5E3673;
|
|
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|
-
$log-warning: #FCC937;
|
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|
-
$log-error: #FD354B;
|
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|
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|
|
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|
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$logo-background: compl(#111318);
|
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|
-
|
|
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|
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@function color-lower-contrast($color, $amount) {
|
|
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|
-
@return lighten($color, $amount);
|
|
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|
-
}
|
|
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|
-
|
|
28
|
-
@function color-increase-contrast($color, $amount) {
|
|
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|
-
@return darken($color, $amount);
|
|
1
|
+
// this is complement of the dark theme
|
|
2
|
+
|
|
3
|
+
@function compl($color) {
|
|
4
|
+
@return rgb(255 - red($color), 255 - green($color), 255 - blue($color));
|
|
5
|
+
}
|
|
6
|
+
|
|
7
|
+
$default-background: compl(#111318);
|
|
8
|
+
$font-color: compl(#ccd4e0);
|
|
9
|
+
$hover-font-color: compl(#51A2FB);
|
|
10
|
+
$entity-current-font-color: compl(#68BEFD);
|
|
11
|
+
$msp-btn-commit-on-font-color: compl(#68BEFD);
|
|
12
|
+
$entity-badge-font-color: lighten(#ccd4e0,10%);
|
|
13
|
+
$msp-btn-remove-background: #DE0A28;
|
|
14
|
+
$msp-btn-remove-hover-font-color:#F2F4F7;
|
|
15
|
+
|
|
16
|
+
// used in LOG
|
|
17
|
+
$log-message: #0CCA5D;
|
|
18
|
+
$log-info: #5E3673;
|
|
19
|
+
$log-warning: #FCC937;
|
|
20
|
+
$log-error: #FD354B;
|
|
21
|
+
|
|
22
|
+
$logo-background: compl(#111318);
|
|
23
|
+
|
|
24
|
+
@function color-lower-contrast($color, $amount) {
|
|
25
|
+
@return lighten($color, $amount);
|
|
26
|
+
}
|
|
27
|
+
|
|
28
|
+
@function color-increase-contrast($color, $amount) {
|
|
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|
+
@return darken($color, $amount);
|
|
30
30
|
}
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
@import 'colors/dark';
|
|
1
|
+
@import 'colors/dark';
|
|
2
2
|
@import 'base/base';
|
|
@@ -1,2 +1,2 @@
|
|
|
1
|
-
@import 'colors/light';
|
|
1
|
+
@import 'colors/light';
|
|
2
2
|
@import 'base/base';
|
|
@@ -91,25 +91,26 @@ var TransformControlBase = /** @class */ (function (_super) {
|
|
|
91
91
|
}
|
|
92
92
|
};
|
|
93
93
|
_this.apply = function () { return __awaiter(_this, void 0, void 0, function () {
|
|
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|
-
var
|
|
95
|
-
var
|
|
96
|
-
return __generator(this, function (
|
|
97
|
-
switch (
|
|
94
|
+
var e_1;
|
|
95
|
+
var _a, _b;
|
|
96
|
+
return __generator(this, function (_c) {
|
|
97
|
+
switch (_c.label) {
|
|
98
98
|
case 0:
|
|
99
99
|
this.clearAutoApply();
|
|
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100
|
this.setState({ busy: true });
|
|
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|
-
|
|
101
|
+
_c.label = 1;
|
|
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102
|
case 1:
|
|
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|
-
|
|
103
|
+
_c.trys.push([1, 3, 4, 5]);
|
|
104
104
|
return [4 /*yield*/, this.applyAction()];
|
|
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105
|
case 2:
|
|
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|
-
|
|
106
|
+
_c.sent();
|
|
107
107
|
return [3 /*break*/, 5];
|
|
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108
|
case 3:
|
|
109
|
-
|
|
109
|
+
e_1 = _c.sent();
|
|
110
|
+
console.error(e_1);
|
|
110
111
|
return [3 /*break*/, 5];
|
|
111
112
|
case 4:
|
|
112
|
-
(
|
|
113
|
+
(_b = (_a = this.props).onApply) === null || _b === void 0 ? void 0 : _b.call(_a);
|
|
113
114
|
this.busy.next(false);
|
|
114
115
|
return [7 /*endfinally*/];
|
|
115
116
|
case 5: return [2 /*return*/];
|
|
@@ -198,7 +198,8 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
|
|
|
198
198
|
return [3 /*break*/, 3];
|
|
199
199
|
case 2:
|
|
200
200
|
e_1 = _a.sent();
|
|
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|
-
|
|
201
|
+
console.error(e_1);
|
|
202
|
+
this.plugin.log.error('Error fetching remote snapshots');
|
|
202
203
|
if (this._mounted)
|
|
203
204
|
this.setState({ entries: OrderedMap(), isBusy: false });
|
|
204
205
|
return [3 /*break*/, 3];
|
|
@@ -257,9 +258,9 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
|
|
|
257
258
|
});
|
|
258
259
|
}); };
|
|
259
260
|
_this.remove = function (e) { return __awaiter(_this, void 0, void 0, function () {
|
|
260
|
-
var id, entry,
|
|
261
|
-
return __generator(this, function (
|
|
262
|
-
switch (
|
|
261
|
+
var id, entry, e_2;
|
|
262
|
+
return __generator(this, function (_a) {
|
|
263
|
+
switch (_a.label) {
|
|
263
264
|
case 0:
|
|
264
265
|
id = e.currentTarget.getAttribute('data-id');
|
|
265
266
|
if (!id)
|
|
@@ -268,15 +269,16 @@ var RemoteStateSnapshots = /** @class */ (function (_super) {
|
|
|
268
269
|
if (!entry)
|
|
269
270
|
return [2 /*return*/];
|
|
270
271
|
this.setState({ entries: this.state.entries.remove(id) });
|
|
271
|
-
|
|
272
|
+
_a.label = 1;
|
|
272
273
|
case 1:
|
|
273
|
-
|
|
274
|
+
_a.trys.push([1, 3, , 4]);
|
|
274
275
|
return [4 /*yield*/, fetch(entry.removeUrl)];
|
|
275
276
|
case 2:
|
|
276
|
-
|
|
277
|
+
_a.sent();
|
|
277
278
|
return [3 /*break*/, 4];
|
|
278
279
|
case 3:
|
|
279
|
-
|
|
280
|
+
e_2 = _a.sent();
|
|
281
|
+
console.error(e_2);
|
|
280
282
|
return [3 /*break*/, 4];
|
|
281
283
|
case 4: return [2 /*return*/];
|
|
282
284
|
}
|
|
@@ -33,7 +33,7 @@ export declare class MeasurementControls extends PurePluginUIComponent<{}, {
|
|
|
33
33
|
}> {
|
|
34
34
|
state: {
|
|
35
35
|
isBusy: boolean;
|
|
36
|
-
action: "
|
|
36
|
+
action: "add" | "options" | undefined;
|
|
37
37
|
};
|
|
38
38
|
componentDidMount(): void;
|
|
39
39
|
componentWillUnmount(): void;
|
|
@@ -342,7 +342,8 @@ function ResidueListSelectionHelper(_a) {
|
|
|
342
342
|
plugin.managers.structure.selection.fromCompiledQuery(modifier, query, false);
|
|
343
343
|
}
|
|
344
344
|
catch (e) {
|
|
345
|
-
|
|
345
|
+
console.error(e);
|
|
346
|
+
plugin.log.error('Failed to create selection');
|
|
346
347
|
}
|
|
347
348
|
};
|
|
348
349
|
return _jsxs(_Fragment, { children: [_jsx(ParameterControls, { params: ResidueListIdTypeParams, values: state, onChangeValues: setState, onEnter: apply }, void 0), _jsxs(Button, __assign({ className: 'msp-btn-commit msp-btn-commit-on', disabled: state.identifiers.trim().length === 0, onClick: apply, style: { marginTop: '1px' } }, { children: [capitalize(modifier), " Selection"] }), void 0)] }, void 0);
|
|
@@ -54,11 +54,10 @@ var SimpleSettingsParams = {
|
|
|
54
54
|
transparent: PD.Boolean(false)
|
|
55
55
|
}, { pivot: 'color' }),
|
|
56
56
|
lighting: PD.Group({
|
|
57
|
-
renderStyle: Canvas3DParams.renderer.params.style,
|
|
58
57
|
occlusion: Canvas3DParams.postprocessing.params.occlusion,
|
|
59
58
|
outline: Canvas3DParams.postprocessing.params.outline,
|
|
60
59
|
fog: Canvas3DParams.cameraFog,
|
|
61
|
-
}, {
|
|
60
|
+
}, { isFlat: true }),
|
|
62
61
|
clipping: PD.Group(__assign(__assign({}, Canvas3DParams.cameraClipping.params), Canvas3DParams.renderer.params.clip.params), { pivot: 'radius' }),
|
|
63
62
|
layout: PD.MultiSelect([], PD.objectToOptions(LayoutOptions)),
|
|
64
63
|
};
|
|
@@ -105,10 +104,9 @@ var SimpleSettingsMapping = ParamMapping({
|
|
|
105
104
|
transparent: canvas.transparentBackground
|
|
106
105
|
},
|
|
107
106
|
lighting: {
|
|
108
|
-
renderStyle: renderer.style,
|
|
109
107
|
occlusion: canvas.postprocessing.occlusion,
|
|
110
108
|
outline: canvas.postprocessing.outline,
|
|
111
|
-
fog: canvas.cameraFog
|
|
109
|
+
fog: canvas.cameraFog,
|
|
112
110
|
},
|
|
113
111
|
clipping: __assign(__assign({}, canvas.cameraClipping), canvas.renderer.clip)
|
|
114
112
|
};
|
|
@@ -120,7 +118,6 @@ var SimpleSettingsMapping = ParamMapping({
|
|
|
120
118
|
canvas.camera = s.camera;
|
|
121
119
|
canvas.transparentBackground = s.background.transparent;
|
|
122
120
|
canvas.renderer.backgroundColor = s.background.color;
|
|
123
|
-
canvas.renderer.style = s.lighting.renderStyle;
|
|
124
121
|
canvas.postprocessing.occlusion = s.lighting.occlusion;
|
|
125
122
|
canvas.postprocessing.outline = s.lighting.outline;
|
|
126
123
|
canvas.cameraFog = s.lighting.fog;
|
|
@@ -20,6 +20,7 @@ import { Mat4 } from '../mol-math/linear-algebra';
|
|
|
20
20
|
import { BaseGeometry } from '../mol-geo/geometry/base';
|
|
21
21
|
import { CustomProperty } from '../mol-model-props/common/custom-property';
|
|
22
22
|
import { Clipping } from '../mol-theme/clipping';
|
|
23
|
+
import { Substance } from '../mol-theme/substance';
|
|
23
24
|
export declare type RepresentationProps = {
|
|
24
25
|
[k: string]: any;
|
|
25
26
|
};
|
|
@@ -90,6 +91,7 @@ interface Representation<D, P extends PD.Params = {}, S extends Representation.S
|
|
|
90
91
|
/** Number of addressable groups in all visuals of the representation */
|
|
91
92
|
readonly groupCount: number;
|
|
92
93
|
readonly renderObjects: ReadonlyArray<GraphicsRenderObject>;
|
|
94
|
+
readonly geometryVersion: number;
|
|
93
95
|
readonly props: Readonly<PD.Values<P>>;
|
|
94
96
|
readonly params: Readonly<P>;
|
|
95
97
|
readonly state: Readonly<S>;
|
|
@@ -125,6 +127,8 @@ declare namespace Representation {
|
|
|
125
127
|
overpaint: Overpaint;
|
|
126
128
|
/** Per group transparency applied to the representation's renderobjects */
|
|
127
129
|
transparency: Transparency;
|
|
130
|
+
/** Per group material applied to the representation's renderobjects */
|
|
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substance: Substance;
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/** Bit mask of per group clipping applied to the representation's renderobjects */
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clipping: Clipping;
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/** Controls if the representation's renderobjects are synced automatically with GPU or not */
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@@ -146,6 +150,14 @@ declare namespace Representation {
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type Def<D, P extends PD.Params = {}, S extends State = State> = {
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[k: string]: RepresentationFactory<D, P, S>;
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};
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class GeometryState {
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private curr;
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private next;
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private _version;
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get version(): number;
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add(id: number, version: number): void;
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snapshot(): void;
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}
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function createMulti<D, P extends PD.Params = {}, S extends State = State>(label: string, ctx: RepresentationContext, getParams: RepresentationParamsGetter<D, P>, stateBuilder: StateBuilder<S>, reprDefs: Def<D, P>): Representation<D, P, S>;
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function fromRenderObject(label: string, renderObject: GraphicsRenderObject): Representation<GraphicsRenderObject, BaseGeometry.Params>;
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}
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@@ -19,6 +19,9 @@ import { getQualityProps } from './util';
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19
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import { BaseGeometry } from '../mol-geo/geometry/base';
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import { Visual } from './visual';
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|
import { Clipping } from '../mol-theme/clipping';
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import { SetUtils } from '../mol-util/set';
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|
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import { cantorPairing } from '../mol-data/util';
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|
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import { Substance } from '../mol-theme/substance';
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export var RepresentationProvider;
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(function (RepresentationProvider) {
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function getDetaultParams(r, ctx, data) {
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@@ -115,7 +118,7 @@ var Representation;
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Loci.Empty = { loci: EmptyLoci };
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})(Loci = Representation.Loci || (Representation.Loci = {}));
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function createState() {
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|
-
return { visible: true, alphaFactor: 1, pickable: true, colorOnly: false, syncManually: false, transform: Mat4.identity(), overpaint: Overpaint.Empty, transparency: Transparency.Empty, clipping: Clipping.Empty, markerActions: MarkerActions.All };
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return { visible: true, alphaFactor: 1, pickable: true, colorOnly: false, syncManually: false, transform: Mat4.identity(), overpaint: Overpaint.Empty, transparency: Transparency.Empty, substance: Substance.Empty, clipping: Clipping.Empty, markerActions: MarkerActions.All };
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}
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|
Representation.createState = createState;
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function updateState(state, update) {
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@@ -131,6 +134,8 @@ var Representation;
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state.overpaint = update.overpaint;
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state.transparency = update.transparency;
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if (update.substance !== undefined)
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state.substance = update.substance;
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@@ -143,7 +148,7 @@ var Representation;
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Representation.updateState = updateState;
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Representation.StateBuilder = { create: createState, update: updateState };
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Representation.Empty = {
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|
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label: '', groupCount: 0, renderObjects: [], props: {}, params: {}, updated: new Subject(), state: createState(), theme: Theme.createEmpty(),
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|
+
label: '', groupCount: 0, renderObjects: [], geometryVersion: -1, props: {}, params: {}, updated: new Subject(), state: createState(), theme: Theme.createEmpty(),
|
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createOrUpdate: function () { return Task.constant('', undefined); },
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setState: function () { },
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setTheme: function () { },
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|
@@ -151,10 +156,38 @@ var Representation;
|
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mark: function () { return false; },
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destroy: function () { }
|
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|
};
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|
+
var GeometryState = /** @class */ (function () {
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function GeometryState() {
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|
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this.curr = new Set();
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|
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this.next = new Set();
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|
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this._version = -1;
|
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|
+
}
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|
+
Object.defineProperty(GeometryState.prototype, "version", {
|
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|
+
get: function () {
|
|
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|
+
return this._version;
|
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|
+
},
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|
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enumerable: false,
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|
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configurable: true
|
|
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|
+
});
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|
+
GeometryState.prototype.add = function (id, version) {
|
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|
+
this.next.add(cantorPairing(id, version));
|
|
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|
+
};
|
|
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|
+
GeometryState.prototype.snapshot = function () {
|
|
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|
+
var _a;
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|
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if (!SetUtils.areEqual(this.curr, this.next)) {
|
|
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|
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this._version += 1;
|
|
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|
+
}
|
|
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|
+
_a = [this.next, this.curr], this.curr = _a[0], this.next = _a[1];
|
|
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|
+
this.next.clear();
|
|
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|
+
};
|
|
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|
+
return GeometryState;
|
|
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|
+
}());
|
|
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|
+
Representation.GeometryState = GeometryState;
|
|
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|
function createMulti(label, ctx, getParams, stateBuilder, reprDefs) {
|
|
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|
var _this = this;
|
|
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|
var version = 0;
|
|
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|
var updated = new Subject();
|
|
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|
+
var geometryState = new GeometryState();
|
|
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|
var currentState = stateBuilder.create();
|
|
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|
var currentTheme = Theme.createEmpty();
|
|
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|
var currentParams;
|
|
@@ -194,6 +227,7 @@ var Representation;
|
|
|
194
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|
}
|
|
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|
return renderObjects;
|
|
196
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|
},
|
|
230
|
+
get geometryVersion() { return geometryState.version; },
|
|
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|
get props() { return currentProps; },
|
|
198
232
|
get params() { return currentParams; },
|
|
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|
createOrUpdate: function (props, data) {
|
|
@@ -215,16 +249,20 @@ var Representation;
|
|
|
215
249
|
i = 0, il = reprList.length;
|
|
216
250
|
_a.label = 1;
|
|
217
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|
case 1:
|
|
218
|
-
if (!(i < il)) return [3 /*break*/,
|
|
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|
+
if (!(i < il)) return [3 /*break*/, 5];
|
|
219
253
|
if (!(!visuals || visuals.includes(reprMap[i]))) return [3 /*break*/, 3];
|
|
220
254
|
return [4 /*yield*/, reprList[i].createOrUpdate(currentProps, currentData).runInContext(runtime)];
|
|
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|
case 2:
|
|
222
256
|
_a.sent();
|
|
223
257
|
_a.label = 3;
|
|
224
258
|
case 3:
|
|
259
|
+
geometryState.add(i, reprList[i].geometryVersion);
|
|
260
|
+
_a.label = 4;
|
|
261
|
+
case 4:
|
|
225
262
|
++i;
|
|
226
263
|
return [3 /*break*/, 1];
|
|
227
|
-
case
|
|
264
|
+
case 5:
|
|
265
|
+
geometryState.snapshot();
|
|
228
266
|
updated.next(version++);
|
|
229
267
|
return [2 /*return*/];
|
|
230
268
|
}
|
|
@@ -254,7 +292,7 @@ var Representation;
|
|
|
254
292
|
setState: function (state) {
|
|
255
293
|
stateBuilder.update(currentState, state);
|
|
256
294
|
for (var i = 0, il = reprList.length; i < il; ++i) {
|
|
257
|
-
reprList[i].setState(
|
|
295
|
+
reprList[i].setState(state); // only set the new (partial) state
|
|
258
296
|
}
|
|
259
297
|
},
|
|
260
298
|
setTheme: function (theme) {
|
|
@@ -275,6 +313,7 @@ var Representation;
|
|
|
275
313
|
var _this = this;
|
|
276
314
|
var version = 0;
|
|
277
315
|
var updated = new Subject();
|
|
316
|
+
var geometryState = new GeometryState();
|
|
278
317
|
var currentState = Representation.createState();
|
|
279
318
|
var currentTheme = Theme.createEmpty();
|
|
280
319
|
var currentParams = PD.clone(BaseGeometry.Params);
|
|
@@ -284,6 +323,7 @@ var Representation;
|
|
|
284
323
|
updated: updated,
|
|
285
324
|
get groupCount() { return renderObject.values.uGroupCount.ref.value; },
|
|
286
325
|
get renderObjects() { return [renderObject]; },
|
|
326
|
+
get geometryVersion() { return geometryState.version; },
|
|
287
327
|
get props() { return currentProps; },
|
|
288
328
|
get params() { return currentParams; },
|
|
289
329
|
createOrUpdate: function (props) {
|
|
@@ -293,6 +333,8 @@ var Representation;
|
|
|
293
333
|
return Task.create("Updating '".concat(label, "' representation"), function (runtime) { return __awaiter(_this, void 0, void 0, function () {
|
|
294
334
|
return __generator(this, function (_a) {
|
|
295
335
|
// TODO
|
|
336
|
+
geometryState.add(0, renderObject.id);
|
|
337
|
+
geometryState.snapshot();
|
|
296
338
|
updated.next(version++);
|
|
297
339
|
return [2 /*return*/];
|
|
298
340
|
});
|
|
@@ -323,6 +365,9 @@ var Representation;
|
|
|
323
365
|
if (state.transparency !== undefined) {
|
|
324
366
|
// TODO
|
|
325
367
|
}
|
|
368
|
+
if (state.substance !== undefined) {
|
|
369
|
+
// TODO
|
|
370
|
+
}
|
|
326
371
|
if (state.transform !== undefined)
|
|
327
372
|
Visual.setTransform(renderObject, state.transform);
|
|
328
373
|
Representation.updateState(currentState, state);
|
|
@@ -27,14 +27,18 @@ export declare const AngleParams: {
|
|
|
27
27
|
tether: PD.BooleanParam;
|
|
28
28
|
tetherLength: PD.Numeric;
|
|
29
29
|
tetherBaseWidth: PD.Numeric;
|
|
30
|
-
attachment: PD.Select<"
|
|
30
|
+
attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
|
|
31
31
|
fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
|
|
32
32
|
fontQuality: PD.Select<number>;
|
|
33
33
|
fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
|
|
34
34
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
35
35
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
36
36
|
alpha: PD.Numeric;
|
|
37
|
-
quality: PD.Select<"
|
|
37
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
38
|
+
material: PD.Group<PD.Normalize<{
|
|
39
|
+
metalness: number;
|
|
40
|
+
roughness: number;
|
|
41
|
+
}>>;
|
|
38
42
|
ignoreLight: PD.BooleanParam;
|
|
39
43
|
sectorOpacity: PD.Numeric;
|
|
40
44
|
color: PD.Color;
|
|
@@ -27,13 +27,17 @@ export declare const LociLabelTextParams: {
|
|
|
27
27
|
tether: PD.BooleanParam;
|
|
28
28
|
tetherLength: PD.Numeric;
|
|
29
29
|
tetherBaseWidth: PD.Numeric;
|
|
30
|
-
attachment: PD.Select<"
|
|
30
|
+
attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
|
|
31
31
|
fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
|
|
32
32
|
fontQuality: PD.Select<number>;
|
|
33
33
|
fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
|
|
34
34
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
35
35
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
36
36
|
alpha: PD.Numeric;
|
|
37
|
-
quality: PD.Select<"
|
|
37
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
38
|
+
material: PD.Group<PD.Normalize<{
|
|
39
|
+
metalness: number;
|
|
40
|
+
roughness: number;
|
|
41
|
+
}>>;
|
|
38
42
|
};
|
|
39
43
|
export declare type LociLabelTextParams = typeof LociLabelTextParams;
|
|
@@ -27,14 +27,18 @@ export declare const DihedralParams: {
|
|
|
27
27
|
tether: PD.BooleanParam;
|
|
28
28
|
tetherLength: PD.Numeric;
|
|
29
29
|
tetherBaseWidth: PD.Numeric;
|
|
30
|
-
attachment: PD.Select<"
|
|
30
|
+
attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
|
|
31
31
|
fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
|
|
32
32
|
fontQuality: PD.Select<number>;
|
|
33
33
|
fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
|
|
34
34
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
35
35
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
36
36
|
alpha: PD.Numeric;
|
|
37
|
-
quality: PD.Select<"
|
|
37
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
38
|
+
material: PD.Group<PD.Normalize<{
|
|
39
|
+
metalness: number;
|
|
40
|
+
roughness: number;
|
|
41
|
+
}>>;
|
|
38
42
|
ignoreLight: PD.BooleanParam;
|
|
39
43
|
sectorOpacity: PD.Numeric;
|
|
40
44
|
color: PD.Color;
|
|
@@ -10,7 +10,7 @@ export interface DistanceData {
|
|
|
10
10
|
pairs: Loci.Bundle<2>[];
|
|
11
11
|
}
|
|
12
12
|
export declare const DistanceParams: {
|
|
13
|
-
visuals: PD.MultiSelect<"
|
|
13
|
+
visuals: PD.MultiSelect<"text" | "lines">;
|
|
14
14
|
unitLabel: PD.Text<string>;
|
|
15
15
|
borderWidth: PD.Numeric;
|
|
16
16
|
customText: PD.Text<string>;
|
|
@@ -28,14 +28,18 @@ export declare const DistanceParams: {
|
|
|
28
28
|
tether: PD.BooleanParam;
|
|
29
29
|
tetherLength: PD.Numeric;
|
|
30
30
|
tetherBaseWidth: PD.Numeric;
|
|
31
|
-
attachment: PD.Select<"
|
|
31
|
+
attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
|
|
32
32
|
fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
|
|
33
33
|
fontQuality: PD.Select<number>;
|
|
34
34
|
fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
|
|
35
35
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
36
36
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
37
37
|
alpha: PD.Numeric;
|
|
38
|
-
quality: PD.Select<"
|
|
38
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
39
|
+
material: PD.Group<PD.Normalize<{
|
|
40
|
+
metalness: number;
|
|
41
|
+
roughness: number;
|
|
42
|
+
}>>;
|
|
39
43
|
lineSizeAttenuation: PD.BooleanParam;
|
|
40
44
|
linesColor: PD.Color;
|
|
41
45
|
linesSize: PD.Numeric;
|
|
@@ -31,14 +31,18 @@ export declare const LabelParams: {
|
|
|
31
31
|
tether: PD.BooleanParam;
|
|
32
32
|
tetherLength: PD.Numeric;
|
|
33
33
|
tetherBaseWidth: PD.Numeric;
|
|
34
|
-
attachment: PD.Select<"
|
|
34
|
+
attachment: PD.Select<"bottom-left" | "bottom-center" | "bottom-right" | "middle-left" | "middle-center" | "middle-right" | "top-left" | "top-center" | "top-right">;
|
|
35
35
|
fontFamily: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontFamily>;
|
|
36
36
|
fontQuality: PD.Select<number>;
|
|
37
37
|
fontStyle: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontStyle>;
|
|
38
38
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
39
39
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
40
40
|
alpha: PD.Numeric;
|
|
41
|
-
quality: PD.Select<"
|
|
41
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
42
|
+
material: PD.Group<PD.Normalize<{
|
|
43
|
+
metalness: number;
|
|
44
|
+
roughness: number;
|
|
45
|
+
}>>;
|
|
42
46
|
};
|
|
43
47
|
export declare type LabelParams = typeof LabelParams;
|
|
44
48
|
export declare type LabelProps = PD.Values<LabelParams>;
|
|
@@ -20,7 +20,11 @@ export declare const OrientationParams: {
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|
|
20
20
|
ignoreLight: PD.BooleanParam;
|
|
21
21
|
xrayShaded: PD.BooleanParam;
|
|
22
22
|
alpha: PD.Numeric;
|
|
23
|
-
quality: PD.Select<"
|
|
23
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
24
|
+
material: PD.Group<PD.Normalize<{
|
|
25
|
+
metalness: number;
|
|
26
|
+
roughness: number;
|
|
27
|
+
}>>;
|
|
24
28
|
};
|
|
25
29
|
export declare type OrientationParams = typeof OrientationParams;
|
|
26
30
|
export declare type OrientationProps = PD.Values<OrientationParams>;
|
|
@@ -19,7 +19,11 @@ export declare const PlaneParams: {
|
|
|
19
19
|
ignoreLight: PD.BooleanParam;
|
|
20
20
|
xrayShaded: PD.BooleanParam;
|
|
21
21
|
alpha: PD.Numeric;
|
|
22
|
-
quality: PD.Select<"
|
|
22
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
23
|
+
material: PD.Group<PD.Normalize<{
|
|
24
|
+
metalness: number;
|
|
25
|
+
roughness: number;
|
|
26
|
+
}>>;
|
|
23
27
|
};
|
|
24
28
|
export declare type PlaneParams = typeof PlaneParams;
|
|
25
29
|
export declare type PlaneProps = PD.Values<PlaneParams>;
|