matterviz 0.3.4 → 0.3.6

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (852) hide show
  1. package/.vscode/launch.json +13 -0
  2. package/.vscodeignore +7 -0
  3. package/dist/assets/STLExporter-BpTH3YHE.js +8 -0
  4. package/dist/assets/browser-DdDecX_W.js +1 -0
  5. package/dist/assets/export-qgn-H9y6.js +2 -0
  6. package/dist/assets/main-DiKYzti2.css +1 -0
  7. package/dist/assets/moyo_wasm_bg-0ocwg7xY.wasm +0 -0
  8. package/dist/extension.js +31293 -0
  9. package/dist/src/lib/FilePicker.svelte +360 -0
  10. package/dist/src/lib/MillerIndexInput.svelte +66 -0
  11. package/dist/src/lib/api/mp.ts +26 -0
  12. package/dist/src/lib/api/optimade.ts +204 -0
  13. package/dist/src/lib/app.css +247 -0
  14. package/dist/src/lib/brillouin/BrillouinZone.svelte +549 -0
  15. package/dist/src/lib/brillouin/BrillouinZoneControls.svelte +144 -0
  16. package/dist/src/lib/brillouin/BrillouinZoneExportPane.svelte +146 -0
  17. package/dist/src/lib/brillouin/BrillouinZoneInfoPane.svelte +146 -0
  18. package/dist/src/lib/brillouin/BrillouinZoneScene.svelte +476 -0
  19. package/dist/src/lib/brillouin/BrillouinZoneTooltip.svelte +92 -0
  20. package/dist/src/lib/brillouin/compute.ts +529 -0
  21. package/dist/src/lib/brillouin/index.ts +8 -0
  22. package/dist/src/lib/brillouin/types.ts +51 -0
  23. package/dist/src/lib/chempot-diagram/ChemPotDiagram.svelte +327 -0
  24. package/dist/src/lib/chempot-diagram/ChemPotDiagram2D.svelte +846 -0
  25. package/dist/src/lib/chempot-diagram/ChemPotDiagram3D.svelte +3193 -0
  26. package/dist/src/lib/chempot-diagram/async-compute.svelte.ts +94 -0
  27. package/dist/src/lib/chempot-diagram/chempot-worker.ts +11 -0
  28. package/dist/src/lib/chempot-diagram/color.ts +42 -0
  29. package/dist/src/lib/chempot-diagram/compute.ts +1014 -0
  30. package/dist/src/lib/chempot-diagram/index.ts +6 -0
  31. package/dist/src/lib/chempot-diagram/pointer.ts +56 -0
  32. package/dist/src/lib/chempot-diagram/temperature.ts +77 -0
  33. package/dist/src/lib/chempot-diagram/types.ts +130 -0
  34. package/dist/src/lib/colors/index.ts +249 -0
  35. package/dist/src/lib/composition/BarChart.svelte +297 -0
  36. package/dist/src/lib/composition/BubbleChart.svelte +218 -0
  37. package/dist/src/lib/composition/Composition.svelte +165 -0
  38. package/dist/src/lib/composition/Formula.svelte +268 -0
  39. package/dist/src/lib/composition/FormulaFilter.svelte +1257 -0
  40. package/dist/src/lib/composition/PieChart.svelte +323 -0
  41. package/dist/src/lib/composition/format.ts +155 -0
  42. package/dist/src/lib/composition/index.ts +37 -0
  43. package/dist/src/lib/composition/parse.ts +605 -0
  44. package/dist/src/lib/constants.ts +134 -0
  45. package/dist/src/lib/controls.ts +42 -0
  46. package/dist/src/lib/convex-hull/ConvexHull.svelte +157 -0
  47. package/dist/src/lib/convex-hull/ConvexHull2D.svelte +825 -0
  48. package/dist/src/lib/convex-hull/ConvexHull3D.svelte +1801 -0
  49. package/dist/src/lib/convex-hull/ConvexHull4D.svelte +1398 -0
  50. package/dist/src/lib/convex-hull/ConvexHullControls.svelte +535 -0
  51. package/dist/src/lib/convex-hull/ConvexHullInfoPane.svelte +125 -0
  52. package/dist/src/lib/convex-hull/ConvexHullStats.svelte +929 -0
  53. package/dist/src/lib/convex-hull/ConvexHullTooltip.svelte +131 -0
  54. package/dist/src/lib/convex-hull/GasPressureControls.svelte +247 -0
  55. package/dist/src/lib/convex-hull/StructurePopup.svelte +151 -0
  56. package/dist/src/lib/convex-hull/TemperatureSlider.svelte +140 -0
  57. package/dist/src/lib/convex-hull/barycentric-coords.ts +246 -0
  58. package/dist/src/lib/convex-hull/demo-temperature.ts +63 -0
  59. package/dist/src/lib/convex-hull/gas-thermodynamics.ts +405 -0
  60. package/dist/src/lib/convex-hull/helpers.ts +932 -0
  61. package/dist/src/lib/convex-hull/index.ts +202 -0
  62. package/dist/src/lib/convex-hull/thermodynamics.ts +2192 -0
  63. package/dist/src/lib/convex-hull/types.ts +267 -0
  64. package/dist/src/lib/coordination/CoordinationBarPlot.svelte +311 -0
  65. package/dist/src/lib/coordination/calc-coordination.ts +93 -0
  66. package/dist/src/lib/coordination/index.ts +9 -0
  67. package/dist/src/lib/effects.svelte.ts +48 -0
  68. package/dist/src/lib/element/BohrAtom.svelte +147 -0
  69. package/dist/src/lib/element/ElementHeading.svelte +26 -0
  70. package/dist/src/lib/element/ElementPhoto.svelte +57 -0
  71. package/dist/src/lib/element/ElementStats.svelte +80 -0
  72. package/dist/src/lib/element/ElementTile.svelte +484 -0
  73. package/dist/src/lib/element/data.json.gz.d.ts +4 -0
  74. package/dist/src/lib/element/data.ts +14 -0
  75. package/dist/src/lib/element/index.ts +8 -0
  76. package/dist/src/lib/element/types.ts +62 -0
  77. package/dist/src/lib/feedback/ClickFeedback.svelte +58 -0
  78. package/dist/src/lib/feedback/DragOverlay.svelte +42 -0
  79. package/dist/src/lib/feedback/index.ts +4 -0
  80. package/dist/src/lib/fermi-surface/FermiSlice.svelte +189 -0
  81. package/dist/src/lib/fermi-surface/FermiSurface.svelte +600 -0
  82. package/dist/src/lib/fermi-surface/FermiSurfaceControls.svelte +448 -0
  83. package/dist/src/lib/fermi-surface/FermiSurfaceScene.svelte +794 -0
  84. package/dist/src/lib/fermi-surface/FermiSurfaceTooltip.svelte +111 -0
  85. package/dist/src/lib/fermi-surface/compute.ts +728 -0
  86. package/dist/src/lib/fermi-surface/constants.ts +32 -0
  87. package/dist/src/lib/fermi-surface/export.ts +64 -0
  88. package/dist/src/lib/fermi-surface/index.ts +14 -0
  89. package/dist/src/lib/fermi-surface/marching-cubes.ts +3 -0
  90. package/dist/src/lib/fermi-surface/parse.ts +574 -0
  91. package/dist/src/lib/fermi-surface/symmetry.ts +56 -0
  92. package/dist/src/lib/fermi-surface/types.ts +159 -0
  93. package/dist/src/lib/heatmap-matrix/HeatmapMatrix.svelte +1545 -0
  94. package/dist/src/lib/heatmap-matrix/HeatmapMatrixControls.svelte +225 -0
  95. package/dist/src/lib/heatmap-matrix/index.ts +167 -0
  96. package/dist/src/lib/heatmap-matrix/shared.ts +7 -0
  97. package/dist/src/lib/icons.ts +650 -0
  98. package/dist/src/lib/index.ts +61 -0
  99. package/dist/src/lib/io/decompress.ts +92 -0
  100. package/dist/src/lib/io/export.ts +385 -0
  101. package/dist/src/lib/io/fetch.ts +46 -0
  102. package/dist/src/lib/io/file-drop.ts +51 -0
  103. package/dist/src/lib/io/index.ts +7 -0
  104. package/dist/src/lib/io/is-binary.ts +24 -0
  105. package/dist/src/lib/io/types.ts +8 -0
  106. package/dist/src/lib/io/url-drop.ts +141 -0
  107. package/dist/src/lib/isosurface/Isosurface.svelte +285 -0
  108. package/dist/src/lib/isosurface/IsosurfaceControls.svelte +277 -0
  109. package/dist/src/lib/isosurface/index.ts +7 -0
  110. package/dist/src/lib/isosurface/parse.ts +656 -0
  111. package/dist/src/lib/isosurface/slice.ts +175 -0
  112. package/dist/src/lib/isosurface/types.ts +309 -0
  113. package/dist/src/lib/labels.ts +320 -0
  114. package/dist/src/lib/layout/FullscreenToggle.svelte +50 -0
  115. package/dist/src/lib/layout/InfoCard.svelte +120 -0
  116. package/dist/src/lib/layout/InfoTag.svelte +185 -0
  117. package/dist/src/lib/layout/PropertyFilter.svelte +246 -0
  118. package/dist/src/lib/layout/SettingsSection.svelte +148 -0
  119. package/dist/src/lib/layout/SubpageGrid.svelte +82 -0
  120. package/dist/src/lib/layout/fullscreen.ts +65 -0
  121. package/dist/src/lib/layout/index.ts +11 -0
  122. package/dist/src/lib/layout/json-tree/JsonNode.svelte +548 -0
  123. package/dist/src/lib/layout/json-tree/JsonTree.svelte +1230 -0
  124. package/dist/src/lib/layout/json-tree/JsonValue.svelte +334 -0
  125. package/dist/src/lib/layout/json-tree/index.ts +3 -0
  126. package/dist/src/lib/layout/json-tree/types.ts +126 -0
  127. package/dist/src/lib/layout/json-tree/utils.ts +682 -0
  128. package/dist/src/lib/marching-cubes.ts +614 -0
  129. package/dist/src/lib/math.ts +1081 -0
  130. package/dist/src/lib/overlays/ContextMenu.svelte +162 -0
  131. package/dist/src/lib/overlays/CopyButton.svelte +45 -0
  132. package/dist/src/lib/overlays/DragControlTab.svelte +98 -0
  133. package/dist/src/lib/overlays/DraggablePane.svelte +487 -0
  134. package/dist/src/lib/overlays/InfoPaneCards.svelte +149 -0
  135. package/dist/src/lib/overlays/index.ts +3 -0
  136. package/dist/src/lib/periodic-table/PeriodicTable.svelte +469 -0
  137. package/dist/src/lib/periodic-table/PeriodicTableControls.svelte +557 -0
  138. package/dist/src/lib/periodic-table/PropertySelect.svelte +37 -0
  139. package/dist/src/lib/periodic-table/index.ts +12 -0
  140. package/dist/src/lib/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +1086 -0
  141. package/dist/src/lib/phase-diagram/PhaseDiagramControls.svelte +444 -0
  142. package/dist/src/lib/phase-diagram/PhaseDiagramEditorPane.svelte +126 -0
  143. package/dist/src/lib/phase-diagram/PhaseDiagramExportPane.svelte +184 -0
  144. package/dist/src/lib/phase-diagram/PhaseDiagramTooltip.svelte +391 -0
  145. package/dist/src/lib/phase-diagram/TdbInfoPanel.svelte +203 -0
  146. package/dist/src/lib/phase-diagram/build-diagram.ts +186 -0
  147. package/dist/src/lib/phase-diagram/colors.ts +58 -0
  148. package/dist/src/lib/phase-diagram/diagram-input.ts +40 -0
  149. package/dist/src/lib/phase-diagram/index.ts +13 -0
  150. package/dist/src/lib/phase-diagram/parse.ts +348 -0
  151. package/dist/src/lib/phase-diagram/svg-to-diagram.ts +1023 -0
  152. package/dist/src/lib/phase-diagram/types.ts +144 -0
  153. package/dist/src/lib/phase-diagram/utils.ts +775 -0
  154. package/dist/src/lib/plot/AxisLabel.svelte +51 -0
  155. package/dist/src/lib/plot/BarPlot.svelte +2113 -0
  156. package/dist/src/lib/plot/BarPlotControls.svelte +66 -0
  157. package/dist/src/lib/plot/BinnedScatterPlot.svelte +1114 -0
  158. package/dist/src/lib/plot/ColorBar.svelte +721 -0
  159. package/dist/src/lib/plot/ColorScaleSelect.svelte +54 -0
  160. package/dist/src/lib/plot/ElementScatter.svelte +63 -0
  161. package/dist/src/lib/plot/FillArea.svelte +223 -0
  162. package/dist/src/lib/plot/Histogram.svelte +1558 -0
  163. package/dist/src/lib/plot/HistogramControls.svelte +212 -0
  164. package/dist/src/lib/plot/InteractiveAxisLabel.svelte +96 -0
  165. package/dist/src/lib/plot/Line.svelte +84 -0
  166. package/dist/src/lib/plot/PlotAxis.svelte +169 -0
  167. package/dist/src/lib/plot/PlotControls.svelte +537 -0
  168. package/dist/src/lib/plot/PlotLegend.svelte +569 -0
  169. package/dist/src/lib/plot/PlotTooltip.svelte +67 -0
  170. package/dist/src/lib/plot/PortalSelect.svelte +253 -0
  171. package/dist/src/lib/plot/ReferenceLine3D.svelte +156 -0
  172. package/dist/src/lib/plot/ReferencePlane.svelte +175 -0
  173. package/dist/src/lib/plot/ScatterPlot.svelte +2778 -0
  174. package/dist/src/lib/plot/ScatterPlot3D.svelte +529 -0
  175. package/dist/src/lib/plot/ScatterPlot3DControls.svelte +437 -0
  176. package/dist/src/lib/plot/ScatterPlot3DScene.svelte +912 -0
  177. package/dist/src/lib/plot/ScatterPlotControls.svelte +306 -0
  178. package/dist/src/lib/plot/ScatterPoint.svelte +182 -0
  179. package/dist/src/lib/plot/SpacegroupBarPlot.svelte +293 -0
  180. package/dist/src/lib/plot/Surface3D.svelte +197 -0
  181. package/dist/src/lib/plot/ZeroLines.svelte +97 -0
  182. package/dist/src/lib/plot/ZoomRect.svelte +23 -0
  183. package/dist/src/lib/plot/adaptive-density.ts +316 -0
  184. package/dist/src/lib/plot/auto-place.ts +184 -0
  185. package/dist/src/lib/plot/axis-utils.ts +122 -0
  186. package/dist/src/lib/plot/binned-scatter-types.ts +83 -0
  187. package/dist/src/lib/plot/data-cleaning.ts +1069 -0
  188. package/dist/src/lib/plot/data-transform.ts +69 -0
  189. package/dist/src/lib/plot/defaults.ts +9 -0
  190. package/dist/src/lib/plot/fill-utils.ts +494 -0
  191. package/dist/src/lib/plot/hover-lock.svelte.ts +60 -0
  192. package/dist/src/lib/plot/index.ts +53 -0
  193. package/dist/src/lib/plot/interactions.ts +119 -0
  194. package/dist/src/lib/plot/layout.ts +425 -0
  195. package/dist/src/lib/plot/reference-line.ts +426 -0
  196. package/dist/src/lib/plot/scales.ts +654 -0
  197. package/dist/src/lib/plot/svg.ts +23 -0
  198. package/dist/src/lib/plot/types.ts +1144 -0
  199. package/dist/src/lib/plot/utils/label-placement.ts +541 -0
  200. package/dist/src/lib/plot/utils/series-visibility.ts +140 -0
  201. package/dist/src/lib/plot/utils.ts +11 -0
  202. package/dist/src/lib/rdf/RdfPlot.svelte +247 -0
  203. package/dist/src/lib/rdf/calc-rdf.ts +167 -0
  204. package/dist/src/lib/rdf/index.ts +27 -0
  205. package/dist/src/lib/sanitize.ts +126 -0
  206. package/dist/src/lib/settings.ts +1479 -0
  207. package/dist/src/lib/spectral/Bands.svelte +1040 -0
  208. package/dist/src/lib/spectral/BandsAndDos.svelte +134 -0
  209. package/dist/src/lib/spectral/BrillouinBandsDos.svelte +252 -0
  210. package/dist/src/lib/spectral/Dos.svelte +697 -0
  211. package/dist/src/lib/spectral/helpers.ts +1381 -0
  212. package/dist/src/lib/spectral/index.ts +8 -0
  213. package/dist/src/lib/spectral/types.ts +112 -0
  214. package/dist/src/lib/state.svelte.ts +64 -0
  215. package/dist/src/lib/structure/Arrow.svelte +72 -0
  216. package/dist/src/lib/structure/AtomLegend.svelte +815 -0
  217. package/dist/src/lib/structure/Bond.svelte +140 -0
  218. package/dist/src/lib/structure/CanvasTooltip.svelte +33 -0
  219. package/dist/src/lib/structure/CellSelect.svelte +349 -0
  220. package/dist/src/lib/structure/Cylinder.svelte +45 -0
  221. package/dist/src/lib/structure/Lattice.svelte +196 -0
  222. package/dist/src/lib/structure/Structure.svelte +2248 -0
  223. package/dist/src/lib/structure/StructureControls.svelte +1273 -0
  224. package/dist/src/lib/structure/StructureExportPane.svelte +252 -0
  225. package/dist/src/lib/structure/StructureInfoPane.svelte +737 -0
  226. package/dist/src/lib/structure/StructureScene.svelte +2255 -0
  227. package/dist/src/lib/structure/atom-properties.ts +316 -0
  228. package/dist/src/lib/structure/bond-order-perception.ts +447 -0
  229. package/dist/src/lib/structure/bonding.ts +944 -0
  230. package/dist/src/lib/structure/export.ts +861 -0
  231. package/dist/src/lib/structure/index.ts +291 -0
  232. package/dist/src/lib/structure/label-placement.ts +130 -0
  233. package/dist/src/lib/structure/measure.ts +45 -0
  234. package/dist/src/lib/structure/parse.ts +1705 -0
  235. package/dist/src/lib/structure/partial-occupancy.ts +183 -0
  236. package/dist/src/lib/structure/pbc.ts +164 -0
  237. package/dist/src/lib/structure/supercell.ts +226 -0
  238. package/dist/src/lib/structure/validation.ts +11 -0
  239. package/dist/src/lib/symmetry/SymmetryStats.svelte +226 -0
  240. package/dist/src/lib/symmetry/WyckoffTable.svelte +120 -0
  241. package/dist/src/lib/symmetry/cell-transform.ts +118 -0
  242. package/dist/src/lib/symmetry/index.ts +348 -0
  243. package/dist/src/lib/symmetry/spacegroups.ts +404 -0
  244. package/dist/src/lib/table/HeatmapTable.svelte +1833 -0
  245. package/dist/src/lib/table/ToggleMenu.svelte +385 -0
  246. package/dist/src/lib/table/index.ts +139 -0
  247. package/dist/src/lib/theme/ThemeControl.svelte +53 -0
  248. package/dist/src/lib/theme/index.ts +107 -0
  249. package/dist/src/lib/theme/themes.mjs +297 -0
  250. package/dist/src/lib/time.ts +71 -0
  251. package/dist/src/lib/tooltip/TooltipContent.svelte +58 -0
  252. package/dist/src/lib/tooltip/index.ts +2 -0
  253. package/dist/src/lib/tooltip/types.ts +13 -0
  254. package/dist/src/lib/trajectory/Trajectory.svelte +1545 -0
  255. package/dist/src/lib/trajectory/TrajectoryError.svelte +128 -0
  256. package/dist/src/lib/trajectory/TrajectoryExportPane.svelte +357 -0
  257. package/dist/src/lib/trajectory/TrajectoryInfoPane.svelte +313 -0
  258. package/dist/src/lib/trajectory/constants.ts +7 -0
  259. package/dist/src/lib/trajectory/extract.ts +196 -0
  260. package/dist/src/lib/trajectory/format-detect.ts +96 -0
  261. package/dist/src/lib/trajectory/frame-reader.ts +456 -0
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  263. package/dist/src/lib/trajectory/index.ts +218 -0
  264. package/dist/src/lib/trajectory/parse/ase.ts +109 -0
  265. package/dist/src/lib/trajectory/parse/hdf5.ts +173 -0
  266. package/dist/src/lib/trajectory/parse/index.ts +411 -0
  267. package/dist/src/lib/trajectory/parse/lammps.ts +215 -0
  268. package/dist/src/lib/trajectory/parse/vasp.ts +102 -0
  269. package/dist/src/lib/trajectory/parse/xyz.ts +143 -0
  270. package/dist/src/lib/trajectory/plotting.ts +599 -0
  271. package/dist/src/lib/trajectory/types.ts +13 -0
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  273. package/dist/src/lib/xrd/XrdPlot.svelte +615 -0
  274. package/dist/src/lib/xrd/broadening.ts +130 -0
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  276. package/dist/src/lib/xrd/index.ts +38 -0
  277. package/dist/src/lib/xrd/parse.ts +858 -0
  278. package/dist/webview.js +29421 -0
  279. package/icon.png +0 -0
  280. package/license +1 -1
  281. package/matterviz-0.3.2.vsix +0 -0
  282. package/matterviz-0.3.4.vsix +0 -0
  283. package/matterviz-0.3.5.vsix +0 -0
  284. package/package.json +1461 -231
  285. package/readme.md +171 -98
  286. package/scripts/sync-config.ts +101 -0
  287. package/src/declarations.d.ts +2 -0
  288. package/src/extension.ts +972 -0
  289. package/src/node-io.ts +65 -0
  290. package/src/types.ts +17 -0
  291. package/src/webview/JsonBrowser.svelte +1079 -0
  292. package/src/webview/PlotPanel.svelte +346 -0
  293. package/src/webview/detect.ts +444 -0
  294. package/src/webview/main.ts +764 -0
  295. package/src/webview/plot-utils.ts +250 -0
  296. package/test-fixtures/all-viz-types.json.gz +0 -0
  297. package/test-fixtures/plot-demo-data.json.gz +0 -0
  298. package/tests/detect.test.ts +604 -0
  299. package/tests/extension.test.ts +2041 -0
  300. package/tests/node-io.test.ts +39 -0
  301. package/tests/plot-utils.test.ts +302 -0
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  304. package/tests/webview.test.ts +231 -0
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  313. package/dist/MillerIndexInput.svelte +0 -66
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  315. package/dist/api/mp.d.ts +0 -6
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  317. package/dist/api/optimade.d.ts +0 -45
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  320. package/dist/brillouin/BrillouinZone.svelte +0 -543
  321. package/dist/brillouin/BrillouinZone.svelte.d.ts +0 -83
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  851. /package/dist/{plot → src/lib/plot}/ReferenceLine.svelte +0 -0
  852. /package/dist/{xrd → src/lib/xrd}/atomic_scattering_params.json +0 -0
@@ -0,0 +1,775 @@
1
+ import { add_alpha } from '$lib/colors'
2
+ import { format_num } from '$lib/labels'
3
+ import { point_in_polygon, type Vec2 } from '$lib/math'
4
+ import type { Sides } from '$lib/plot/layout'
5
+ import { line } from 'd3-shape'
6
+ import type {
7
+ CompUnit,
8
+ LeverRuleMode,
9
+ LeverRuleResult,
10
+ PhaseDiagramConfig,
11
+ PhaseDiagramData,
12
+ PhaseHoverInfo,
13
+ PhaseRegion,
14
+ TempUnit,
15
+ VerticalLeverRuleResult,
16
+ } from './types'
17
+
18
+ // Convert temperature between units (K, °C, °F)
19
+ export function convert_temp(value: number, from: TempUnit, to: TempUnit): number {
20
+ if (from === to) return value
21
+ // Convert to Kelvin first
22
+ const kelvin =
23
+ from === `°C` ? value + 273.15 : from === `°F` ? (value - 32) * (5 / 9) + 273.15 : value
24
+ // Convert from Kelvin to target
25
+ return to === `K` ? kelvin : to === `°C` ? kelvin - 273.15 : (kelvin - 273.15) * (9 / 5) + 32
26
+ }
27
+
28
+ // Centralized defaults for phase diagram configuration (single source of truth)
29
+ export const PHASE_DIAGRAM_DEFAULTS = Object.freeze({
30
+ // Visibility
31
+ show_boundaries: true,
32
+ show_labels: true,
33
+ show_special_points: true,
34
+ show_grid: true,
35
+ show_component_labels: true,
36
+ // Appearance
37
+ font_size: 12,
38
+ special_point_radius: 5,
39
+ // Axes
40
+ x_ticks: 5,
41
+ y_ticks: 6,
42
+ // Tie-line
43
+ tie_line: Object.freeze({
44
+ stroke_width: 1.5,
45
+ endpoint_radius: 4,
46
+ cursor_radius: 5,
47
+ }),
48
+ // Colors
49
+ colors: Object.freeze({
50
+ background: `transparent`,
51
+ grid: `rgba(128, 128, 128, 0.3)`,
52
+ axis: `var(--text-color, #333)`,
53
+ text: `var(--text-color, #333)`,
54
+ boundary: `#333`,
55
+ special_point: `#d32f2f`,
56
+ }),
57
+ // Margins
58
+ margin: Object.freeze({ t: 25, r: 25, b: 50, l: 60 } as Required<Sides>),
59
+ // Export
60
+ png_dpi: 150,
61
+ })
62
+
63
+ // Merge partial config with defaults - single helper for consistent merging
64
+ export function merge_phase_diagram_config(config: Partial<PhaseDiagramConfig>) {
65
+ return {
66
+ margin: { ...PHASE_DIAGRAM_DEFAULTS.margin, ...config.margin },
67
+ font_size: config.font_size ?? PHASE_DIAGRAM_DEFAULTS.font_size,
68
+ special_point_radius:
69
+ config.special_point_radius ?? PHASE_DIAGRAM_DEFAULTS.special_point_radius,
70
+ tie_line: { ...PHASE_DIAGRAM_DEFAULTS.tie_line, ...config.tie_line },
71
+ colors: { ...PHASE_DIAGRAM_DEFAULTS.colors, ...config.colors },
72
+ }
73
+ }
74
+
75
+ // Phase colors as hex - single source of truth
76
+ // Extended palette supports 3+ phase regions (Greek letters α through λ)
77
+ export const PHASE_COLOR_HEX = {
78
+ liquid: `#87cefc`, // light sky blue
79
+ alpha: `#90ee90`, // light green
80
+ beta: `#ffb6c1`, // light pink
81
+ gamma: `#ffdab9`, // peach puff
82
+ delta: `#dda0dd`, // plum
83
+ epsilon: `#f0e68c`, // khaki
84
+ zeta: `#fa8072`, // salmon (distinct from liquid's light blue)
85
+ eta: `#e6e6fa`, // lavender (distinct from alpha's light green)
86
+ theta: `#f5deb3`, // wheat
87
+ iota: `#20b2aa`, // light sea green
88
+ kappa: `#deb887`, // burlywood
89
+ lambda: `#bc8f8f`, // rosy brown
90
+ two_phase: `#c8c8c8`,
91
+ default: `#b4b4b4`,
92
+ tie_line: `#ff6b6b`,
93
+ } as const
94
+
95
+ export type PhaseColorKey = keyof typeof PHASE_COLOR_HEX
96
+
97
+ // Derive RGB string format (e.g. "135, 206, 250") for custom alpha usage
98
+ export const PHASE_COLOR_RGB = Object.freeze(
99
+ Object.fromEntries(
100
+ Object.entries(PHASE_COLOR_HEX).map(([key, hex]) => {
101
+ const red = parseInt(hex.slice(1, 3), 16)
102
+ const green = parseInt(hex.slice(3, 5), 16)
103
+ const blue = parseInt(hex.slice(5, 7), 16)
104
+ return [key, `${red}, ${green}, ${blue}`]
105
+ }),
106
+ ),
107
+ ) as Record<PhaseColorKey, string>
108
+
109
+ // Derive rgba() format with default alpha using add_alpha
110
+ const PHASE_ALPHA = { two_phase: 0.5, default: 0.5, tie_line: 1 } as const
111
+ export const PHASE_COLORS = Object.freeze(
112
+ Object.fromEntries(
113
+ Object.entries(PHASE_COLOR_HEX).map(([key, hex]) => [
114
+ key,
115
+ add_alpha(hex, key in PHASE_ALPHA ? PHASE_ALPHA[key as keyof typeof PHASE_ALPHA] : 0.6),
116
+ ]),
117
+ ),
118
+ ) as Record<PhaseColorKey, string>
119
+
120
+ // Phase pattern matching rules: [substrings to match, color key, optional prefix check]
121
+ // Order matters: theta before eta (since "theta" contains "eta" as substring)
122
+ const PHASE_PATTERNS: [string[], PhaseColorKey, string?][] = [
123
+ [[`liquid`], `liquid`],
124
+ [[`α`, `alpha`], `alpha`, `fcc`],
125
+ [[`β`, `beta`], `beta`, `bcc`],
126
+ [[`γ`, `gamma`], `gamma`, `hcp`],
127
+ [[`δ`, `delta`], `delta`],
128
+ [[`ε`, `epsilon`], `epsilon`],
129
+ [[`ζ`, `zeta`], `zeta`],
130
+ [[`θ`, `theta`], `theta`], // must come before eta
131
+ [[`η`, `eta`], `eta`],
132
+ [[`ι`, `iota`], `iota`],
133
+ [[`κ`, `kappa`], `kappa`],
134
+ [[`λ`, `lambda`], `lambda`],
135
+ ]
136
+
137
+ // Get color key for a single phase name (supports Greek letters and common phase notation)
138
+ export function get_phase_color_key(name: string): PhaseColorKey {
139
+ const lower = name.toLowerCase().trim()
140
+ if (lower === `l`) return `liquid` // exact match for shorthand "L"
141
+ for (const [patterns, key, prefix] of PHASE_PATTERNS) {
142
+ if (patterns.some((pattern) => lower.includes(pattern))) return key
143
+ if (prefix && lower.startsWith(prefix)) return key
144
+ }
145
+ return `default`
146
+ }
147
+
148
+ // Get phase color - returns rgba() by default, or RGB string if format='rgb'
149
+ export function get_phase_color(name: string, format: `rgba` | `rgb` = `rgba`): string {
150
+ const lower = name.toLowerCase().trim()
151
+ const key: PhaseColorKey = lower.includes(`+`) ? `two_phase` : get_phase_color_key(name)
152
+ return format === `rgb` ? PHASE_COLOR_RGB[key] : PHASE_COLORS[key]
153
+ }
154
+
155
+ // Gradient stop for multi-phase region gradients
156
+ export interface GradientStop {
157
+ offset: number // 0-1 range
158
+ color: string // hex color
159
+ }
160
+
161
+ // Get gradient colors for multi-phase regions (2+ phases separated by '+')
162
+ // Returns array of evenly-spaced gradient stops, or null for single-phase regions
163
+ export function get_multi_phase_gradient(name: string): GradientStop[] | null {
164
+ if (!name.includes(`+`)) return null
165
+ const phases = name
166
+ .split(`+`)
167
+ .map((phase) => phase.trim())
168
+ .filter(Boolean)
169
+ if (phases.length < 2) return null
170
+
171
+ // Create evenly spaced gradient stops (phases.length >= 2 guaranteed by early return)
172
+ return phases.map((phase, idx) => ({
173
+ offset: idx / (phases.length - 1),
174
+ color: PHASE_COLOR_HEX[get_phase_color_key(phase)],
175
+ }))
176
+ }
177
+
178
+ // Find which phase region contains the given composition and temperature
179
+ export function find_phase_at_point(
180
+ composition: number,
181
+ temperature: number,
182
+ data: PhaseDiagramData,
183
+ ): PhaseRegion | null {
184
+ // Search regions in reverse order so later-defined regions take precedence
185
+ for (let idx = data.regions.length - 1; idx >= 0; idx--) {
186
+ const region = data.regions[idx]
187
+ if (point_in_polygon(composition, temperature, region.vertices)) {
188
+ return region
189
+ }
190
+ }
191
+ return null
192
+ }
193
+
194
+ // SVG path generator using d3-shape
195
+ const path_line = line()
196
+ .x((point) => point[0])
197
+ .y((point) => point[1])
198
+
199
+ // Generate closed SVG path for polygon regions (min 3 points)
200
+ export const generate_region_path = (vertices: Vec2[]): string =>
201
+ vertices.length < 3 ? `` : `${path_line(vertices)} Z`
202
+
203
+ // Generate open SVG path for boundary curves (min 2 points)
204
+ export const generate_boundary_path = (points: Vec2[]): string =>
205
+ points.length < 2 ? `` : (path_line(points) ?? ``)
206
+
207
+ // Compute label properties (rotation, wrapping, scale) to fit within region bounds
208
+ export function compute_label_properties(
209
+ label: string,
210
+ bounds: { width: number; height: number },
211
+ font_size: number,
212
+ ): { rotation: number; lines: string[]; scale: number } {
213
+ if (bounds.width <= 0 || bounds.height <= 0 || !label || font_size <= 0) {
214
+ return { rotation: 0, lines: label ? [label] : [], scale: 1 }
215
+ }
216
+ // Handle whitespace-only labels that pass truthy check but have zero rendered width
217
+ if (label.trim().length === 0) return { rotation: 0, lines: [], scale: 1 }
218
+
219
+ const char_width = font_size * 0.6 // approximate character width
220
+ const line_height = font_size * 1.2
221
+ const padding = 0.8 // 20% margin
222
+
223
+ const label_width = label.length * char_width
224
+ const avail_w = bounds.width * padding
225
+ const avail_h = bounds.height * padding
226
+
227
+ // Try horizontal fit
228
+ if (label_width <= avail_w && line_height <= avail_h) {
229
+ return { rotation: 0, lines: [label], scale: 1 }
230
+ }
231
+
232
+ // Try vertical for tall narrow regions
233
+ const is_tall = bounds.width < bounds.height
234
+ if (is_tall && label_width <= avail_h && line_height <= avail_w) {
235
+ return { rotation: -90, lines: [label], scale: 1 }
236
+ }
237
+
238
+ // Try wrapping multi-word labels
239
+ if (/[\s_-]/.test(label)) {
240
+ const chars_per_line = Math.max(3, Math.floor(avail_w / char_width))
241
+ const lines = wrap_text(label, chars_per_line)
242
+ const wrapped_w = Math.max(...lines.map((ln) => ln.length)) * char_width
243
+ const wrapped_h = lines.length * line_height
244
+
245
+ if (wrapped_w <= avail_w && wrapped_h <= avail_h) {
246
+ return { rotation: 0, lines, scale: 1 }
247
+ }
248
+ if (is_tall && wrapped_w <= avail_h && wrapped_h <= avail_w) {
249
+ return { rotation: -90, lines, scale: 1 }
250
+ }
251
+ }
252
+
253
+ // Scale down as last resort (min 70%)
254
+ const scale = Math.max(0.7, Math.min(avail_w / label_width, avail_h / line_height, 1))
255
+ const rotation = is_tall ? -90 : 0
256
+ return { rotation, lines: [label], scale }
257
+ }
258
+
259
+ // Wrap text into multiple lines at delimiter boundaries
260
+ function wrap_text(text: string, max_chars: number): string[] {
261
+ const words = text.split(/[_\s-]+/).filter((word) => word.length > 0)
262
+ if (words.length === 0) return [text]
263
+
264
+ const lines: string[] = []
265
+ let current_line = ``
266
+
267
+ for (const word of words) {
268
+ const candidate = current_line ? `${current_line} ${word}` : word
269
+ if (candidate.length <= max_chars) {
270
+ current_line = candidate
271
+ } else {
272
+ if (current_line) lines.push(current_line)
273
+ current_line = word
274
+ }
275
+ }
276
+
277
+ if (current_line) lines.push(current_line)
278
+ return lines
279
+ }
280
+
281
+ // Transform data coordinates to SVG coordinates using scale functions
282
+ export const transform_vertices = (
283
+ vertices: Vec2[],
284
+ x_scale: (val: number) => number,
285
+ y_scale: (val: number) => number,
286
+ ): Vec2[] => vertices.map(([comp, temp]) => [x_scale(comp), y_scale(temp)])
287
+
288
+ // Format composition value for display
289
+ export function format_composition(
290
+ value: number,
291
+ unit: CompUnit = `at%`,
292
+ include_unit: boolean = true,
293
+ ): string {
294
+ if (unit === `fraction`) return format_num(value, `.3~f`)
295
+ const formatted = format_num(value * 100, `.3~`)
296
+ return include_unit ? `${formatted} ${unit}` : formatted
297
+ }
298
+
299
+ // Format temperature value for display
300
+ export function format_temperature(value: number, unit: TempUnit = `K`): string {
301
+ return `${format_num(value, `.0f`)} ${unit}`
302
+ }
303
+
304
+ // Parse a two-phase region name into its two phase names
305
+ // Returns null if the region is not exactly a two-phase region
306
+ function parse_two_phases(name: string): [string, string] | null {
307
+ if (!name.includes(`+`)) return null
308
+ const parts = name
309
+ .trim()
310
+ .split(/\s*\+\s*/)
311
+ .filter(Boolean)
312
+ return parts.length === 2 ? [parts[0], parts[1]] : null
313
+ }
314
+
315
+ // Find polygon edge intersections along a scan line (horizontal or vertical)
316
+ // For horizontal: fixed_val = temperature, returns x-intersections
317
+ // For vertical: fixed_val = composition, returns y-intersections
318
+ function find_polygon_intersections(
319
+ vertices: Vec2[],
320
+ fixed_val: number,
321
+ axis: 0 | 1,
322
+ ): number[] {
323
+ const other = axis === 0 ? 1 : 0
324
+ const intersections: number[] = []
325
+ for (let idx = 0; idx < vertices.length; idx++) {
326
+ const v1 = vertices[idx]
327
+ const v2 = vertices[(idx + 1) % vertices.length]
328
+ if (
329
+ (v1[axis] <= fixed_val && v2[axis] > fixed_val) ||
330
+ (v2[axis] <= fixed_val && v1[axis] > fixed_val)
331
+ ) {
332
+ intersections.push(
333
+ v1[other] + ((fixed_val - v1[axis]) / (v2[axis] - v1[axis])) * (v2[other] - v1[other]),
334
+ )
335
+ }
336
+ }
337
+ return intersections.toSorted((a, b) => a - b)
338
+ }
339
+
340
+ function pick_bracketing_intersection_pair(
341
+ intersections: number[],
342
+ position: number,
343
+ ): [number, number] | null {
344
+ if (intersections.length < 2) return null
345
+
346
+ const unique_intersections: number[] = []
347
+ const dedup_tol = 1e-9
348
+ for (const value of intersections) {
349
+ const prev_value = unique_intersections.at(-1)
350
+ if (prev_value === undefined || Math.abs(value - prev_value) > dedup_tol) {
351
+ unique_intersections.push(value)
352
+ }
353
+ }
354
+ if (unique_intersections.length < 2) return null
355
+
356
+ const bound_tol = 1e-10
357
+ for (let pair_idx = 0; pair_idx + 1 < unique_intersections.length; pair_idx += 2) {
358
+ const low_bound = unique_intersections[pair_idx]
359
+ const high_bound = unique_intersections[pair_idx + 1]
360
+ if (position >= low_bound - bound_tol && position <= high_bound + bound_tol) {
361
+ return [low_bound, high_bound]
362
+ }
363
+ }
364
+
365
+ // Fallback for numerical edge cases where even-odd pairing fails:
366
+ // pick nearest enclosing neighbors around the hovered point.
367
+ let left_idx = -1
368
+ for (let idx = 0; idx < unique_intersections.length; idx++) {
369
+ if (unique_intersections[idx] <= position + bound_tol) left_idx = idx
370
+ }
371
+ if (left_idx < 0 || left_idx + 1 >= unique_intersections.length) return null
372
+
373
+ const left_bound = unique_intersections[left_idx]
374
+ const right_bound = unique_intersections[left_idx + 1]
375
+ return right_bound - left_bound > bound_tol ? [left_bound, right_bound] : null
376
+ }
377
+
378
+ // Shared core for lever rule calculations (horizontal and vertical)
379
+ // Parses phases, finds intersections along the scan axis, validates bounds,
380
+ // and computes the fractional position within the two-phase region.
381
+ function lever_rule_core(
382
+ region: PhaseRegion,
383
+ position: number,
384
+ scan_val: number,
385
+ axis: 0 | 1,
386
+ ): { phases: [string, string]; lo: number; hi: number; fraction_hi: number } | null {
387
+ const phases = parse_two_phases(region.name)
388
+ if (!phases) return null
389
+
390
+ const intersections = find_polygon_intersections(region.vertices, scan_val, axis)
391
+ const bounds = pick_bracketing_intersection_pair(intersections, position)
392
+ if (!bounds) return null
393
+ const [lo, hi] = bounds
394
+
395
+ const span = hi - lo
396
+ if (span < 1e-10) return null
397
+
398
+ return { phases, lo, hi, fraction_hi: (position - lo) / span }
399
+ }
400
+
401
+ // Calculate lever rule for a point in a two-phase region
402
+ // Returns null if the region is not exactly a two-phase region or calculation fails
403
+ // Note: Lever rule is thermodynamically defined only for two-phase equilibria
404
+ export function calculate_lever_rule(
405
+ region: PhaseRegion,
406
+ composition: number,
407
+ temperature: number,
408
+ ): LeverRuleResult | null {
409
+ // Horizontal scan: fixed temperature, find composition intersections
410
+ const core = lever_rule_core(region, composition, temperature, 1)
411
+ if (!core) return null
412
+
413
+ return {
414
+ left_phase: core.phases[0],
415
+ right_phase: core.phases[1],
416
+ left_composition: core.lo,
417
+ right_composition: core.hi,
418
+ fraction_left: 1 - core.fraction_hi,
419
+ fraction_right: core.fraction_hi,
420
+ }
421
+ }
422
+
423
+ // Calculate vertical lever rule for a point in a two-phase region
424
+ // Uses constant composition (vertical line) to find temperature boundaries
425
+ export function calculate_vertical_lever_rule(
426
+ region: PhaseRegion,
427
+ composition: number,
428
+ temperature: number,
429
+ ): VerticalLeverRuleResult | null {
430
+ // Vertical scan: fixed composition, find temperature intersections
431
+ const core = lever_rule_core(region, temperature, composition, 0)
432
+ if (!core) return null
433
+
434
+ return {
435
+ bottom_phase: core.phases[0],
436
+ top_phase: core.phases[1],
437
+ bottom_temperature: core.lo,
438
+ top_temperature: core.hi,
439
+ fraction_bottom: 1 - core.fraction_hi,
440
+ fraction_top: core.fraction_hi,
441
+ }
442
+ }
443
+
444
+ // Format hover info as copyable text for clipboard
445
+ // Only includes lever rule data for the active mode to match tooltip display
446
+ export function format_hover_info_text(
447
+ info: PhaseHoverInfo,
448
+ temp_unit: TempUnit = `K`,
449
+ comp_unit: CompUnit = `at%`,
450
+ component_a: string = `A`,
451
+ component_b: string = `B`,
452
+ data_temp_unit: TempUnit = temp_unit,
453
+ lever_rule_mode: LeverRuleMode = `horizontal`,
454
+ ): string {
455
+ // Convert temperature from data unit to display unit
456
+ const to_display = (temp: number) => convert_temp(temp, data_temp_unit, temp_unit)
457
+
458
+ const lines: string[] = [
459
+ `Phase: ${info.region.name}`,
460
+ `Temperature: ${format_temperature(to_display(info.temperature), temp_unit)}`,
461
+ `Composition: ${format_composition(info.composition, comp_unit)} ${component_b} (${format_composition(
462
+ 1 - info.composition,
463
+ comp_unit,
464
+ )} ${component_a})`,
465
+ ]
466
+
467
+ if (lever_rule_mode === `horizontal` && info.lever_rule) {
468
+ const lr = info.lever_rule
469
+ lines.push(
470
+ ``,
471
+ `Lever Rule:`,
472
+ ` ${lr.left_phase}: ${format_num(lr.fraction_left * 100, `.1f`)}% (at ${format_composition(
473
+ lr.left_composition,
474
+ comp_unit,
475
+ )})`,
476
+ ` ${lr.right_phase}: ${format_num(lr.fraction_right * 100, `.1f`)}% (at ${format_composition(
477
+ lr.right_composition,
478
+ comp_unit,
479
+ )})`,
480
+ )
481
+ }
482
+
483
+ if (lever_rule_mode === `vertical` && info.vertical_lever_rule) {
484
+ const vlr = info.vertical_lever_rule
485
+ lines.push(
486
+ ``,
487
+ `Vertical Lever Rule:`,
488
+ ` ${vlr.bottom_phase}: ${format_num(vlr.fraction_bottom * 100, `.1f`)}% (at ${format_temperature(
489
+ to_display(vlr.bottom_temperature),
490
+ temp_unit,
491
+ )})`,
492
+ ` ${vlr.top_phase}: ${format_num(vlr.fraction_top * 100, `.1f`)}% (at ${format_temperature(
493
+ to_display(vlr.top_temperature),
494
+ temp_unit,
495
+ )})`,
496
+ )
497
+ }
498
+
499
+ return lines.join(`\n`)
500
+ }
501
+
502
+ // Calculate temperature stability range for a phase at given composition
503
+ export function get_phase_stability_range(
504
+ region: PhaseRegion,
505
+ ): { t_min: number; t_max: number } | null {
506
+ if (!region.vertices?.length) return null
507
+ let t_min = Infinity
508
+ let t_max = -Infinity
509
+ for (const [, temp] of region.vertices) {
510
+ if (temp < t_min) t_min = temp
511
+ if (temp > t_max) t_max = temp
512
+ }
513
+ return { t_min, t_max }
514
+ }
515
+
516
+ // Extract reference/citation from TDB comments
517
+ export function extract_tdb_reference(comments: string[]): string | null {
518
+ const ref_keywords = [`reference`, `citation`, `database`, `assessed by`]
519
+ for (const comment of comments) {
520
+ const lower = comment.toLowerCase()
521
+ if (ref_keywords.some((kw) => lower.includes(kw))) {
522
+ const ref = comment.replace(/^\$\s*/, ``).trim()
523
+ // Skip incomplete references (must have substantial content after keyword)
524
+ if (ref.length > 30 && !ref.endsWith(`from`)) return ref
525
+ }
526
+ }
527
+ return null
528
+ }
529
+
530
+ // Summarize sublattice models from TDB phases
531
+ export function summarize_models(
532
+ phases: { sublattice_count: number; sublattice_sites: number[] }[],
533
+ ): string {
534
+ const counts = new Map<number, number>()
535
+ for (const phase of phases) {
536
+ counts.set(phase.sublattice_count, (counts.get(phase.sublattice_count) ?? 0) + 1)
537
+ }
538
+ return [...counts.entries()]
539
+ .toSorted(([sl_a], [sl_b]) => sl_a - sl_b)
540
+ .map(([sublattices, count]) => `${count}×${sublattices}-SL`)
541
+ .join(`, `)
542
+ }
543
+
544
+ // Chemical Formula Parsing Utilities (for pseudo-binary phase diagrams)
545
+
546
+ // Token from formula tokenization - can be text, subscript, or superscript
547
+ export interface FormulaToken {
548
+ text?: string
549
+ sub?: string
550
+ sup?: string
551
+ }
552
+
553
+ // Check if a component name is a compound (vs single element)
554
+ // Returns true if name contains digits (e.g., "Fe3C", "SiO2") or multiple uppercase letters
555
+ // that indicate multiple elements (e.g., "MgO", "CaO")
556
+ // Single elements like "Fe", "Ca", "He" return false
557
+ export function is_compound(name: string): boolean {
558
+ if (!name) return false
559
+ // Contains digits -> likely a compound (Fe3C, SiO2, Al2O3)
560
+ if (/\d/.test(name)) return true
561
+ // Single element pattern: one uppercase followed by optional lowercase (Fe, Ca, He, C)
562
+ if (/^[A-Z][a-z]?$/.test(name)) return false
563
+ return (name.match(/[A-Z]/g)?.length ?? 0) >= 2
564
+ }
565
+
566
+ // Tokenize a chemical formula for rendering with subscripts/superscripts
567
+ // Examples:
568
+ // "Fe3C" -> [{text: "Fe"}, {sub: "3"}, {text: "C"}]
569
+ // "SiO2" -> [{text: "Si"}, {text: "O"}, {sub: "2"}]
570
+ // "Al2O3" -> [{text: "Al"}, {sub: "2"}, {text: "O"}, {sub: "3"}]
571
+ // "Fe" -> [{text: "Fe"}]
572
+ // "α-Fe" -> [{text: "α-Fe"}] (Greek phases pass through unchanged)
573
+ export function tokenize_formula(formula: string): FormulaToken[] {
574
+ if (!formula) return []
575
+
576
+ // If it contains Greek letters or special phase notation, return as-is
577
+ if (/[α-ωΑ-Ω]/.test(formula) || formula.includes(`+`)) {
578
+ return [{ text: formula }]
579
+ }
580
+
581
+ const tokens: FormulaToken[] = []
582
+ let idx = 0
583
+
584
+ while (idx < formula.length) {
585
+ const char = formula[idx]
586
+
587
+ // Check for subscript digits (numbers following letters)
588
+ if (/\d/.test(char)) {
589
+ // Collect consecutive digits
590
+ let num = ``
591
+ while (idx < formula.length && /\d/.test(formula[idx])) {
592
+ num += formula[idx]
593
+ idx++
594
+ }
595
+ tokens.push({ sub: num })
596
+ continue
597
+ }
598
+
599
+ // Check for superscript (- charge notation, e.g., "O2-" or "Cl-2")
600
+ // Note: + is handled by the early return for phase notation like "α + β"
601
+ // Treat '-' as charge when: at end of string, OR followed by digit
602
+ // Otherwise preserve as text for hyphenated names like "Fe-Fe3C"
603
+ if (char === `-`) {
604
+ idx++
605
+ if (idx >= formula.length || /\d/.test(formula[idx])) {
606
+ // End of string or followed by digit - parse as charge superscript
607
+ let charge = `-`
608
+ while (idx < formula.length && /\d/.test(formula[idx])) {
609
+ charge += formula[idx]
610
+ idx++
611
+ }
612
+ tokens.push({ sup: charge })
613
+ } else tokens.push({ text: `-` }) // Not at end and not followed by digit - preserve hyphen
614
+ continue
615
+ }
616
+
617
+ // Check for element symbol (uppercase followed by optional lowercase)
618
+ if (/[A-Z]/.test(char)) {
619
+ let element = char
620
+ idx++
621
+ // Collect following lowercase letters
622
+ while (idx < formula.length && /[a-z]/.test(formula[idx])) {
623
+ element += formula[idx]
624
+ idx++
625
+ }
626
+ tokens.push({ text: element })
627
+ continue
628
+ }
629
+
630
+ // Any other character (lowercase, hyphen, etc.) - collect as text
631
+ let text = char
632
+ idx++
633
+ while (idx < formula.length && !/[A-Z\d-]/.test(formula[idx])) {
634
+ text += formula[idx]
635
+ idx++
636
+ }
637
+ // Merge with previous text token if possible
638
+ if (tokens.length > 0 && tokens[tokens.length - 1].text !== undefined) {
639
+ tokens[tokens.length - 1].text += text
640
+ } else {
641
+ tokens.push({ text })
642
+ }
643
+ }
644
+
645
+ return tokens
646
+ }
647
+
648
+ // Baseline shifts for sub/superscript (SVG dy values are cumulative across tspans)
649
+ const DY = { sub: 0.25, sup: -0.4 } as const
650
+
651
+ // Format chemical formula as SVG tspan elements with subscripts
652
+ // Tracks cumulative baseline offset and adds trailing reset so concatenated text aligns
653
+ export function format_formula_svg(formula: string, use_subscripts = true): string {
654
+ if (!use_subscripts || !is_compound(formula)) return formula
655
+
656
+ let result = ``
657
+ let offset = 0
658
+
659
+ for (const token of tokenize_formula(formula)) {
660
+ if (token.text !== undefined) {
661
+ result += offset ? `<tspan dy="${-offset}em">${token.text}</tspan>` : token.text
662
+ offset = 0
663
+ } else {
664
+ const dy = token.sub !== undefined ? DY.sub : DY.sup
665
+ result += `<tspan dy="${dy}em" font-size="0.75em">${token.sub ?? token.sup}</tspan>`
666
+ offset += dy
667
+ }
668
+ }
669
+
670
+ // Reset baseline after trailing subscript/superscript using a zero-width space
671
+ // (empty tspans may not apply dy in all SVG renderers)
672
+ if (offset) result += `<tspan dy="${-offset}em">\u200B</tspan>`
673
+ return result
674
+ }
675
+
676
+ // Split a multi-phase label on " + " and format each part with the given formatter
677
+ function format_label_parts(
678
+ label: string,
679
+ use_subscripts: boolean,
680
+ formatter: (formula: string, use_sub: boolean) => string,
681
+ ): string {
682
+ if (!use_subscripts) return label
683
+ return label
684
+ .split(/(\s*\+\s*)/)
685
+ .map((part) => {
686
+ if (part.trim() === `+`) return part
687
+ return formatter(part.trim(), use_subscripts)
688
+ })
689
+ .join(``)
690
+ }
691
+
692
+ // Format a phase region label (e.g. "La2NiO4 + NiO") as SVG with subscripts
693
+ export const format_label_svg = (label: string, use_subscripts = true): string =>
694
+ format_label_parts(label, use_subscripts, format_formula_svg)
695
+
696
+ // Format a phase region label as HTML with subscripts (splits on " + ")
697
+ export const format_label_html = (label: string, use_subscripts = true): string =>
698
+ format_label_parts(label, use_subscripts, format_formula_html)
699
+
700
+ // Format chemical formula as HTML with <sub> and <sup> tags
701
+ export function format_formula_html(formula: string, use_subscripts = true): string {
702
+ if (!use_subscripts || !is_compound(formula)) return formula
703
+
704
+ return tokenize_formula(formula)
705
+ .map(
706
+ (token) =>
707
+ token.text ?? (token.sub ? `<sub>${token.sub}</sub>` : `<sup>${token.sup}</sup>`),
708
+ )
709
+ .join(``)
710
+ }
711
+
712
+ // Compute the x-axis domain for a binary phase diagram.
713
+ // Uses explicit range if fully specified, otherwise derives from data extent
714
+ // and auto-extends to 0/1 when edge regions contain pure components.
715
+ export function compute_x_domain(
716
+ x_range: [number | null, number | null] | undefined,
717
+ data: PhaseDiagramData | null,
718
+ ): Vec2 {
719
+ const lo = x_range?.[0]
720
+ const hi = x_range?.[1]
721
+ if (lo != null && hi != null) return [lo, hi]
722
+
723
+ if (data) {
724
+ let data_min = Infinity
725
+ let data_max = -Infinity
726
+ const update = (val: number) => {
727
+ if (val < data_min) data_min = val
728
+ if (val > data_max) data_max = val
729
+ }
730
+ for (const region of data.regions) {
731
+ for (const vertex of region.vertices) update(vertex[0])
732
+ }
733
+ for (const boundary of data.boundaries) {
734
+ for (const point of boundary.points) update(point[0])
735
+ }
736
+ for (const special_point of data.special_points ?? []) {
737
+ update(special_point.position[0])
738
+ }
739
+
740
+ if (data_min <= data_max) {
741
+ let x_min = lo ?? data_min
742
+ let x_max = hi ?? data_max
743
+
744
+ // Auto-extend to 0/1 when edge regions contain a pure component AND the
745
+ // data already nearly reaches the boundary
746
+ const comp_at_edge = (comp: string, x_val: number) => {
747
+ const re = new RegExp(`\\b${comp.replaceAll(/[.*+?^${}()|[\]\\]/g, `\\$&`)}\\b`)
748
+ return data.regions.some(
749
+ (region) =>
750
+ re.test(region.name) &&
751
+ region.vertices.some((vertex) => Math.abs(vertex[0] - x_val) < 1e-6),
752
+ )
753
+ }
754
+ if (
755
+ lo == null &&
756
+ x_min < 0.05 &&
757
+ data.components[0] &&
758
+ comp_at_edge(data.components[0], x_min)
759
+ ) {
760
+ x_min = 0
761
+ }
762
+ if (
763
+ hi == null &&
764
+ x_max > 0.95 &&
765
+ data.components[1] &&
766
+ comp_at_edge(data.components[1], x_max)
767
+ ) {
768
+ x_max = 1
769
+ }
770
+
771
+ return [x_min, x_max]
772
+ }
773
+ }
774
+ return [lo ?? 0, hi ?? 1]
775
+ }