matterviz 0.3.4 → 0.3.6
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.vscode/launch.json +13 -0
- package/.vscodeignore +7 -0
- package/dist/assets/STLExporter-BpTH3YHE.js +8 -0
- package/dist/assets/browser-DdDecX_W.js +1 -0
- package/dist/assets/export-qgn-H9y6.js +2 -0
- package/dist/assets/main-DiKYzti2.css +1 -0
- package/dist/assets/moyo_wasm_bg-0ocwg7xY.wasm +0 -0
- package/dist/extension.js +31293 -0
- package/dist/src/lib/FilePicker.svelte +360 -0
- package/dist/src/lib/MillerIndexInput.svelte +66 -0
- package/dist/src/lib/api/mp.ts +26 -0
- package/dist/src/lib/api/optimade.ts +204 -0
- package/dist/src/lib/app.css +247 -0
- package/dist/src/lib/brillouin/BrillouinZone.svelte +549 -0
- package/dist/src/lib/brillouin/BrillouinZoneControls.svelte +144 -0
- package/dist/src/lib/brillouin/BrillouinZoneExportPane.svelte +146 -0
- package/dist/src/lib/brillouin/BrillouinZoneInfoPane.svelte +146 -0
- package/dist/src/lib/brillouin/BrillouinZoneScene.svelte +476 -0
- package/dist/src/lib/brillouin/BrillouinZoneTooltip.svelte +92 -0
- package/dist/src/lib/brillouin/compute.ts +529 -0
- package/dist/src/lib/brillouin/index.ts +8 -0
- package/dist/src/lib/brillouin/types.ts +51 -0
- package/dist/src/lib/chempot-diagram/ChemPotDiagram.svelte +327 -0
- package/dist/src/lib/chempot-diagram/ChemPotDiagram2D.svelte +846 -0
- package/dist/src/lib/chempot-diagram/ChemPotDiagram3D.svelte +3193 -0
- package/dist/src/lib/chempot-diagram/async-compute.svelte.ts +94 -0
- package/dist/src/lib/chempot-diagram/chempot-worker.ts +11 -0
- package/dist/src/lib/chempot-diagram/color.ts +42 -0
- package/dist/src/lib/chempot-diagram/compute.ts +1014 -0
- package/dist/src/lib/chempot-diagram/index.ts +6 -0
- package/dist/src/lib/chempot-diagram/pointer.ts +56 -0
- package/dist/src/lib/chempot-diagram/temperature.ts +77 -0
- package/dist/src/lib/chempot-diagram/types.ts +130 -0
- package/dist/src/lib/colors/index.ts +249 -0
- package/dist/src/lib/composition/BarChart.svelte +297 -0
- package/dist/src/lib/composition/BubbleChart.svelte +218 -0
- package/dist/src/lib/composition/Composition.svelte +165 -0
- package/dist/src/lib/composition/Formula.svelte +268 -0
- package/dist/src/lib/composition/FormulaFilter.svelte +1257 -0
- package/dist/src/lib/composition/PieChart.svelte +323 -0
- package/dist/src/lib/composition/format.ts +155 -0
- package/dist/src/lib/composition/index.ts +37 -0
- package/dist/src/lib/composition/parse.ts +605 -0
- package/dist/src/lib/constants.ts +134 -0
- package/dist/src/lib/controls.ts +42 -0
- package/dist/src/lib/convex-hull/ConvexHull.svelte +157 -0
- package/dist/src/lib/convex-hull/ConvexHull2D.svelte +825 -0
- package/dist/src/lib/convex-hull/ConvexHull3D.svelte +1801 -0
- package/dist/src/lib/convex-hull/ConvexHull4D.svelte +1398 -0
- package/dist/src/lib/convex-hull/ConvexHullControls.svelte +535 -0
- package/dist/src/lib/convex-hull/ConvexHullInfoPane.svelte +125 -0
- package/dist/src/lib/convex-hull/ConvexHullStats.svelte +929 -0
- package/dist/src/lib/convex-hull/ConvexHullTooltip.svelte +131 -0
- package/dist/src/lib/convex-hull/GasPressureControls.svelte +247 -0
- package/dist/src/lib/convex-hull/StructurePopup.svelte +151 -0
- package/dist/src/lib/convex-hull/TemperatureSlider.svelte +140 -0
- package/dist/src/lib/convex-hull/barycentric-coords.ts +246 -0
- package/dist/src/lib/convex-hull/demo-temperature.ts +63 -0
- package/dist/src/lib/convex-hull/gas-thermodynamics.ts +405 -0
- package/dist/src/lib/convex-hull/helpers.ts +932 -0
- package/dist/src/lib/convex-hull/index.ts +202 -0
- package/dist/src/lib/convex-hull/thermodynamics.ts +2192 -0
- package/dist/src/lib/convex-hull/types.ts +267 -0
- package/dist/src/lib/coordination/CoordinationBarPlot.svelte +311 -0
- package/dist/src/lib/coordination/calc-coordination.ts +93 -0
- package/dist/src/lib/coordination/index.ts +9 -0
- package/dist/src/lib/effects.svelte.ts +48 -0
- package/dist/src/lib/element/BohrAtom.svelte +147 -0
- package/dist/src/lib/element/ElementHeading.svelte +26 -0
- package/dist/src/lib/element/ElementPhoto.svelte +57 -0
- package/dist/src/lib/element/ElementStats.svelte +80 -0
- package/dist/src/lib/element/ElementTile.svelte +484 -0
- package/dist/src/lib/element/data.json.gz.d.ts +4 -0
- package/dist/src/lib/element/data.ts +14 -0
- package/dist/src/lib/element/index.ts +8 -0
- package/dist/src/lib/element/types.ts +62 -0
- package/dist/src/lib/feedback/ClickFeedback.svelte +58 -0
- package/dist/src/lib/feedback/DragOverlay.svelte +42 -0
- package/dist/src/lib/feedback/index.ts +4 -0
- package/dist/src/lib/fermi-surface/FermiSlice.svelte +189 -0
- package/dist/src/lib/fermi-surface/FermiSurface.svelte +600 -0
- package/dist/src/lib/fermi-surface/FermiSurfaceControls.svelte +448 -0
- package/dist/src/lib/fermi-surface/FermiSurfaceScene.svelte +794 -0
- package/dist/src/lib/fermi-surface/FermiSurfaceTooltip.svelte +111 -0
- package/dist/src/lib/fermi-surface/compute.ts +728 -0
- package/dist/src/lib/fermi-surface/constants.ts +32 -0
- package/dist/src/lib/fermi-surface/export.ts +64 -0
- package/dist/src/lib/fermi-surface/index.ts +14 -0
- package/dist/src/lib/fermi-surface/marching-cubes.ts +3 -0
- package/dist/src/lib/fermi-surface/parse.ts +574 -0
- package/dist/src/lib/fermi-surface/symmetry.ts +56 -0
- package/dist/src/lib/fermi-surface/types.ts +159 -0
- package/dist/src/lib/heatmap-matrix/HeatmapMatrix.svelte +1545 -0
- package/dist/src/lib/heatmap-matrix/HeatmapMatrixControls.svelte +225 -0
- package/dist/src/lib/heatmap-matrix/index.ts +167 -0
- package/dist/src/lib/heatmap-matrix/shared.ts +7 -0
- package/dist/src/lib/icons.ts +650 -0
- package/dist/src/lib/index.ts +61 -0
- package/dist/src/lib/io/decompress.ts +92 -0
- package/dist/src/lib/io/export.ts +385 -0
- package/dist/src/lib/io/fetch.ts +46 -0
- package/dist/src/lib/io/file-drop.ts +51 -0
- package/dist/src/lib/io/index.ts +7 -0
- package/dist/src/lib/io/is-binary.ts +24 -0
- package/dist/src/lib/io/types.ts +8 -0
- package/dist/src/lib/io/url-drop.ts +141 -0
- package/dist/src/lib/isosurface/Isosurface.svelte +285 -0
- package/dist/src/lib/isosurface/IsosurfaceControls.svelte +277 -0
- package/dist/src/lib/isosurface/index.ts +7 -0
- package/dist/src/lib/isosurface/parse.ts +656 -0
- package/dist/src/lib/isosurface/slice.ts +175 -0
- package/dist/src/lib/isosurface/types.ts +309 -0
- package/dist/src/lib/labels.ts +320 -0
- package/dist/src/lib/layout/FullscreenToggle.svelte +50 -0
- package/dist/src/lib/layout/InfoCard.svelte +120 -0
- package/dist/src/lib/layout/InfoTag.svelte +185 -0
- package/dist/src/lib/layout/PropertyFilter.svelte +246 -0
- package/dist/src/lib/layout/SettingsSection.svelte +148 -0
- package/dist/src/lib/layout/SubpageGrid.svelte +82 -0
- package/dist/src/lib/layout/fullscreen.ts +65 -0
- package/dist/src/lib/layout/index.ts +11 -0
- package/dist/src/lib/layout/json-tree/JsonNode.svelte +548 -0
- package/dist/src/lib/layout/json-tree/JsonTree.svelte +1230 -0
- package/dist/src/lib/layout/json-tree/JsonValue.svelte +334 -0
- package/dist/src/lib/layout/json-tree/index.ts +3 -0
- package/dist/src/lib/layout/json-tree/types.ts +126 -0
- package/dist/src/lib/layout/json-tree/utils.ts +682 -0
- package/dist/src/lib/marching-cubes.ts +614 -0
- package/dist/src/lib/math.ts +1081 -0
- package/dist/src/lib/overlays/ContextMenu.svelte +162 -0
- package/dist/src/lib/overlays/CopyButton.svelte +45 -0
- package/dist/src/lib/overlays/DragControlTab.svelte +98 -0
- package/dist/src/lib/overlays/DraggablePane.svelte +487 -0
- package/dist/src/lib/overlays/InfoPaneCards.svelte +149 -0
- package/dist/src/lib/overlays/index.ts +3 -0
- package/dist/src/lib/periodic-table/PeriodicTable.svelte +469 -0
- package/dist/src/lib/periodic-table/PeriodicTableControls.svelte +557 -0
- package/dist/src/lib/periodic-table/PropertySelect.svelte +37 -0
- package/dist/src/lib/periodic-table/index.ts +12 -0
- package/dist/src/lib/phase-diagram/IsobaricBinaryPhaseDiagram.svelte +1086 -0
- package/dist/src/lib/phase-diagram/PhaseDiagramControls.svelte +444 -0
- package/dist/src/lib/phase-diagram/PhaseDiagramEditorPane.svelte +126 -0
- package/dist/src/lib/phase-diagram/PhaseDiagramExportPane.svelte +184 -0
- package/dist/src/lib/phase-diagram/PhaseDiagramTooltip.svelte +391 -0
- package/dist/src/lib/phase-diagram/TdbInfoPanel.svelte +203 -0
- package/dist/src/lib/phase-diagram/build-diagram.ts +186 -0
- package/dist/src/lib/phase-diagram/colors.ts +58 -0
- package/dist/src/lib/phase-diagram/diagram-input.ts +40 -0
- package/dist/src/lib/phase-diagram/index.ts +13 -0
- package/dist/src/lib/phase-diagram/parse.ts +348 -0
- package/dist/src/lib/phase-diagram/svg-to-diagram.ts +1023 -0
- package/dist/src/lib/phase-diagram/types.ts +144 -0
- package/dist/src/lib/phase-diagram/utils.ts +775 -0
- package/dist/src/lib/plot/AxisLabel.svelte +51 -0
- package/dist/src/lib/plot/BarPlot.svelte +2113 -0
- package/dist/src/lib/plot/BarPlotControls.svelte +66 -0
- package/dist/src/lib/plot/BinnedScatterPlot.svelte +1114 -0
- package/dist/src/lib/plot/ColorBar.svelte +721 -0
- package/dist/src/lib/plot/ColorScaleSelect.svelte +54 -0
- package/dist/src/lib/plot/ElementScatter.svelte +63 -0
- package/dist/src/lib/plot/FillArea.svelte +223 -0
- package/dist/src/lib/plot/Histogram.svelte +1558 -0
- package/dist/src/lib/plot/HistogramControls.svelte +212 -0
- package/dist/src/lib/plot/InteractiveAxisLabel.svelte +96 -0
- package/dist/src/lib/plot/Line.svelte +84 -0
- package/dist/src/lib/plot/PlotAxis.svelte +169 -0
- package/dist/src/lib/plot/PlotControls.svelte +537 -0
- package/dist/src/lib/plot/PlotLegend.svelte +569 -0
- package/dist/src/lib/plot/PlotTooltip.svelte +67 -0
- package/dist/src/lib/plot/PortalSelect.svelte +253 -0
- package/dist/src/lib/plot/ReferenceLine3D.svelte +156 -0
- package/dist/src/lib/plot/ReferencePlane.svelte +175 -0
- package/dist/src/lib/plot/ScatterPlot.svelte +2778 -0
- package/dist/src/lib/plot/ScatterPlot3D.svelte +529 -0
- package/dist/src/lib/plot/ScatterPlot3DControls.svelte +437 -0
- package/dist/src/lib/plot/ScatterPlot3DScene.svelte +912 -0
- package/dist/src/lib/plot/ScatterPlotControls.svelte +306 -0
- package/dist/src/lib/plot/ScatterPoint.svelte +182 -0
- package/dist/src/lib/plot/SpacegroupBarPlot.svelte +293 -0
- package/dist/src/lib/plot/Surface3D.svelte +197 -0
- package/dist/src/lib/plot/ZeroLines.svelte +97 -0
- package/dist/src/lib/plot/ZoomRect.svelte +23 -0
- package/dist/src/lib/plot/adaptive-density.ts +316 -0
- package/dist/src/lib/plot/auto-place.ts +184 -0
- package/dist/src/lib/plot/axis-utils.ts +122 -0
- package/dist/src/lib/plot/binned-scatter-types.ts +83 -0
- package/dist/src/lib/plot/data-cleaning.ts +1069 -0
- package/dist/src/lib/plot/data-transform.ts +69 -0
- package/dist/src/lib/plot/defaults.ts +9 -0
- package/dist/src/lib/plot/fill-utils.ts +494 -0
- package/dist/src/lib/plot/hover-lock.svelte.ts +60 -0
- package/dist/src/lib/plot/index.ts +53 -0
- package/dist/src/lib/plot/interactions.ts +119 -0
- package/dist/src/lib/plot/layout.ts +425 -0
- package/dist/src/lib/plot/reference-line.ts +426 -0
- package/dist/src/lib/plot/scales.ts +654 -0
- package/dist/src/lib/plot/svg.ts +23 -0
- package/dist/src/lib/plot/types.ts +1144 -0
- package/dist/src/lib/plot/utils/label-placement.ts +541 -0
- package/dist/src/lib/plot/utils/series-visibility.ts +140 -0
- package/dist/src/lib/plot/utils.ts +11 -0
- package/dist/src/lib/rdf/RdfPlot.svelte +247 -0
- package/dist/src/lib/rdf/calc-rdf.ts +167 -0
- package/dist/src/lib/rdf/index.ts +27 -0
- package/dist/src/lib/sanitize.ts +126 -0
- package/dist/src/lib/settings.ts +1479 -0
- package/dist/src/lib/spectral/Bands.svelte +1040 -0
- package/dist/src/lib/spectral/BandsAndDos.svelte +134 -0
- package/dist/src/lib/spectral/BrillouinBandsDos.svelte +252 -0
- package/dist/src/lib/spectral/Dos.svelte +697 -0
- package/dist/src/lib/spectral/helpers.ts +1381 -0
- package/dist/src/lib/spectral/index.ts +8 -0
- package/dist/src/lib/spectral/types.ts +112 -0
- package/dist/src/lib/state.svelte.ts +64 -0
- package/dist/src/lib/structure/Arrow.svelte +72 -0
- package/dist/src/lib/structure/AtomLegend.svelte +815 -0
- package/dist/src/lib/structure/Bond.svelte +140 -0
- package/dist/src/lib/structure/CanvasTooltip.svelte +33 -0
- package/dist/src/lib/structure/CellSelect.svelte +349 -0
- package/dist/src/lib/structure/Cylinder.svelte +45 -0
- package/dist/src/lib/structure/Lattice.svelte +196 -0
- package/dist/src/lib/structure/Structure.svelte +2248 -0
- package/dist/src/lib/structure/StructureControls.svelte +1273 -0
- package/dist/src/lib/structure/StructureExportPane.svelte +252 -0
- package/dist/src/lib/structure/StructureInfoPane.svelte +737 -0
- package/dist/src/lib/structure/StructureScene.svelte +2255 -0
- package/dist/src/lib/structure/atom-properties.ts +316 -0
- package/dist/src/lib/structure/bond-order-perception.ts +447 -0
- package/dist/src/lib/structure/bonding.ts +944 -0
- package/dist/src/lib/structure/export.ts +861 -0
- package/dist/src/lib/structure/index.ts +291 -0
- package/dist/src/lib/structure/label-placement.ts +130 -0
- package/dist/src/lib/structure/measure.ts +45 -0
- package/dist/src/lib/structure/parse.ts +1705 -0
- package/dist/src/lib/structure/partial-occupancy.ts +183 -0
- package/dist/src/lib/structure/pbc.ts +164 -0
- package/dist/src/lib/structure/supercell.ts +226 -0
- package/dist/src/lib/structure/validation.ts +11 -0
- package/dist/src/lib/symmetry/SymmetryStats.svelte +226 -0
- package/dist/src/lib/symmetry/WyckoffTable.svelte +120 -0
- package/dist/src/lib/symmetry/cell-transform.ts +118 -0
- package/dist/src/lib/symmetry/index.ts +348 -0
- package/dist/src/lib/symmetry/spacegroups.ts +404 -0
- package/dist/src/lib/table/HeatmapTable.svelte +1833 -0
- package/dist/src/lib/table/ToggleMenu.svelte +385 -0
- package/dist/src/lib/table/index.ts +139 -0
- package/dist/src/lib/theme/ThemeControl.svelte +53 -0
- package/dist/src/lib/theme/index.ts +107 -0
- package/dist/src/lib/theme/themes.mjs +297 -0
- package/dist/src/lib/time.ts +71 -0
- package/dist/src/lib/tooltip/TooltipContent.svelte +58 -0
- package/dist/src/lib/tooltip/index.ts +2 -0
- package/dist/src/lib/tooltip/types.ts +13 -0
- package/dist/src/lib/trajectory/Trajectory.svelte +1545 -0
- package/dist/src/lib/trajectory/TrajectoryError.svelte +128 -0
- package/dist/src/lib/trajectory/TrajectoryExportPane.svelte +357 -0
- package/dist/src/lib/trajectory/TrajectoryInfoPane.svelte +313 -0
- package/dist/src/lib/trajectory/constants.ts +7 -0
- package/dist/src/lib/trajectory/extract.ts +196 -0
- package/dist/src/lib/trajectory/format-detect.ts +96 -0
- package/dist/src/lib/trajectory/frame-reader.ts +456 -0
- package/dist/src/lib/trajectory/helpers.ts +217 -0
- package/dist/src/lib/trajectory/index.ts +218 -0
- package/dist/src/lib/trajectory/parse/ase.ts +109 -0
- package/dist/src/lib/trajectory/parse/hdf5.ts +173 -0
- package/dist/src/lib/trajectory/parse/index.ts +411 -0
- package/dist/src/lib/trajectory/parse/lammps.ts +215 -0
- package/dist/src/lib/trajectory/parse/vasp.ts +102 -0
- package/dist/src/lib/trajectory/parse/xyz.ts +143 -0
- package/dist/src/lib/trajectory/plotting.ts +599 -0
- package/dist/src/lib/trajectory/types.ts +13 -0
- package/dist/src/lib/utils.ts +56 -0
- package/dist/src/lib/xrd/XrdPlot.svelte +615 -0
- package/dist/src/lib/xrd/broadening.ts +130 -0
- package/dist/src/lib/xrd/calc-xrd.ts +397 -0
- package/dist/src/lib/xrd/index.ts +38 -0
- package/dist/src/lib/xrd/parse.ts +858 -0
- package/dist/webview.js +29421 -0
- package/icon.png +0 -0
- package/license +1 -1
- package/matterviz-0.3.2.vsix +0 -0
- package/matterviz-0.3.4.vsix +0 -0
- package/matterviz-0.3.5.vsix +0 -0
- package/package.json +1461 -231
- package/readme.md +171 -98
- package/scripts/sync-config.ts +101 -0
- package/src/declarations.d.ts +2 -0
- package/src/extension.ts +972 -0
- package/src/node-io.ts +65 -0
- package/src/types.ts +17 -0
- package/src/webview/JsonBrowser.svelte +1079 -0
- package/src/webview/PlotPanel.svelte +346 -0
- package/src/webview/detect.ts +444 -0
- package/src/webview/main.ts +764 -0
- package/src/webview/plot-utils.ts +250 -0
- package/test-fixtures/all-viz-types.json.gz +0 -0
- package/test-fixtures/plot-demo-data.json.gz +0 -0
- package/tests/detect.test.ts +604 -0
- package/tests/extension.test.ts +2041 -0
- package/tests/node-io.test.ts +39 -0
- package/tests/plot-utils.test.ts +302 -0
- package/tests/vite-plugin-json-gz.test.ts +114 -0
- package/tests/vscode-mock.ts +18 -0
- package/tests/webview.test.ts +231 -0
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- package/vite.extension.config.ts +34 -0
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- package/dist/FilePicker.svelte +0 -360
- package/dist/FilePicker.svelte.d.ts +0 -17
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- package/dist/MillerIndexInput.svelte +0 -66
- package/dist/MillerIndexInput.svelte.d.ts +0 -7
- package/dist/api/mp.d.ts +0 -6
- package/dist/api/mp.js +0 -22
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- package/dist/app.css +0 -240
- package/dist/brillouin/BrillouinZone.svelte +0 -543
- package/dist/brillouin/BrillouinZone.svelte.d.ts +0 -83
- package/dist/brillouin/BrillouinZoneControls.svelte +0 -144
- package/dist/brillouin/BrillouinZoneControls.svelte.d.ts +0 -17
- package/dist/brillouin/BrillouinZoneExportPane.svelte +0 -148
- package/dist/brillouin/BrillouinZoneExportPane.svelte.d.ts +0 -15
- package/dist/brillouin/BrillouinZoneInfoPane.svelte +0 -146
- package/dist/brillouin/BrillouinZoneInfoPane.svelte.d.ts +0 -13
- package/dist/brillouin/BrillouinZoneScene.svelte +0 -476
- package/dist/brillouin/BrillouinZoneScene.svelte.d.ts +0 -48
- package/dist/brillouin/BrillouinZoneTooltip.svelte +0 -92
- package/dist/brillouin/BrillouinZoneTooltip.svelte.d.ts +0 -8
- package/dist/brillouin/compute.d.ts +0 -17
- package/dist/brillouin/compute.js +0 -422
- package/dist/brillouin/index.d.ts +0 -8
- package/dist/brillouin/index.js +0 -8
- package/dist/brillouin/types.d.ts +0 -48
- package/dist/brillouin/types.js +0 -1
- package/dist/chempot-diagram/ChemPotDiagram.svelte +0 -327
- package/dist/chempot-diagram/ChemPotDiagram.svelte.d.ts +0 -13
- package/dist/chempot-diagram/ChemPotDiagram2D.svelte +0 -847
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- package/dist/chempot-diagram/ChemPotDiagram3D.svelte +0 -3194
- package/dist/chempot-diagram/ChemPotDiagram3D.svelte.d.ts +0 -16
- package/dist/chempot-diagram/ChemPotScene3D.svelte.d.ts +0 -7
- package/dist/chempot-diagram/async-compute.svelte.d.ts +0 -3
- package/dist/chempot-diagram/async-compute.svelte.js +0 -77
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- package/dist/structure/StructureExportPane.svelte +0 -251
- package/dist/structure/StructureExportPane.svelte.d.ts +0 -17
- package/dist/structure/StructureInfoPane.svelte +0 -434
- package/dist/structure/StructureInfoPane.svelte.d.ts +0 -18
- package/dist/structure/StructureScene.svelte +0 -1574
- package/dist/structure/StructureScene.svelte.d.ts +0 -104
- package/dist/structure/atom-properties.d.ts +0 -37
- package/dist/structure/atom-properties.js +0 -198
- package/dist/structure/bonding.d.ts +0 -33
- package/dist/structure/bonding.js +0 -304
- package/dist/structure/export.d.ts +0 -20
- package/dist/structure/export.js +0 -725
- package/dist/structure/ferrox-wasm-types.d.ts +0 -46
- package/dist/structure/ferrox-wasm-types.js +0 -18
- package/dist/structure/ferrox-wasm.d.ts +0 -94
- package/dist/structure/ferrox-wasm.js +0 -249
- package/dist/structure/index.d.ts +0 -110
- package/dist/structure/index.js +0 -168
- package/dist/structure/measure.d.ts +0 -6
- package/dist/structure/measure.js +0 -29
- package/dist/structure/parse.d.ts +0 -65
- package/dist/structure/parse.js +0 -1374
- package/dist/structure/partial-occupancy.d.ts +0 -25
- package/dist/structure/partial-occupancy.js +0 -99
- package/dist/structure/pbc.d.ts +0 -9
- package/dist/structure/pbc.js +0 -123
- package/dist/structure/supercell.d.ts +0 -8
- package/dist/structure/supercell.js +0 -137
- package/dist/structure/validation.d.ts +0 -2
- package/dist/structure/validation.js +0 -10
- package/dist/symmetry/SymmetryStats.svelte +0 -226
- package/dist/symmetry/SymmetryStats.svelte.d.ts +0 -21
- package/dist/symmetry/WyckoffTable.svelte +0 -113
- package/dist/symmetry/WyckoffTable.svelte.d.ts +0 -11
- package/dist/symmetry/cell-transform.d.ts +0 -12
- package/dist/symmetry/cell-transform.js +0 -77
- package/dist/symmetry/index.d.ts +0 -43
- package/dist/symmetry/index.js +0 -229
- package/dist/symmetry/spacegroups.d.ts +0 -9
- package/dist/symmetry/spacegroups.js +0 -394
- package/dist/table/HeatmapTable.svelte +0 -1854
- package/dist/table/HeatmapTable.svelte.d.ts +0 -49
- package/dist/table/ToggleMenu.svelte +0 -376
- package/dist/table/ToggleMenu.svelte.d.ts +0 -11
- package/dist/table/index.d.ts +0 -74
- package/dist/table/index.js +0 -38
- package/dist/theme/ThemeControl.svelte +0 -53
- package/dist/theme/ThemeControl.svelte.d.ts +0 -9
- package/dist/theme/index.d.ts +0 -29
- package/dist/theme/index.js +0 -79
- package/dist/theme/themes.mjs +0 -285
- package/dist/time.d.ts +0 -4
- package/dist/time.js +0 -70
- package/dist/tooltip/TooltipContent.svelte +0 -58
- package/dist/tooltip/TooltipContent.svelte.d.ts +0 -31
- package/dist/tooltip/index.d.ts +0 -2
- package/dist/tooltip/index.js +0 -2
- package/dist/tooltip/types.d.ts +0 -8
- package/dist/tooltip/types.js +0 -1
- package/dist/trajectory/Trajectory.svelte +0 -1517
- package/dist/trajectory/Trajectory.svelte.d.ts +0 -77
- package/dist/trajectory/TrajectoryError.svelte +0 -128
- package/dist/trajectory/TrajectoryError.svelte.d.ts +0 -13
- package/dist/trajectory/TrajectoryExportPane.svelte +0 -357
- package/dist/trajectory/TrajectoryExportPane.svelte.d.ts +0 -17
- package/dist/trajectory/TrajectoryInfoPane.svelte +0 -387
- package/dist/trajectory/TrajectoryInfoPane.svelte.d.ts +0 -17
- package/dist/trajectory/constants.d.ts +0 -6
- package/dist/trajectory/constants.js +0 -7
- package/dist/trajectory/extract.d.ts +0 -5
- package/dist/trajectory/extract.js +0 -162
- package/dist/trajectory/format-detect.d.ts +0 -9
- package/dist/trajectory/format-detect.js +0 -76
- package/dist/trajectory/frame-reader.d.ts +0 -17
- package/dist/trajectory/frame-reader.js +0 -332
- package/dist/trajectory/helpers.d.ts +0 -14
- package/dist/trajectory/helpers.js +0 -172
- package/dist/trajectory/index.d.ts +0 -63
- package/dist/trajectory/index.js +0 -126
- package/dist/trajectory/parse/ase.d.ts +0 -2
- package/dist/trajectory/parse/ase.js +0 -77
- package/dist/trajectory/parse/hdf5.d.ts +0 -2
- package/dist/trajectory/parse/hdf5.js +0 -129
- package/dist/trajectory/parse/index.d.ts +0 -12
- package/dist/trajectory/parse/index.js +0 -299
- package/dist/trajectory/parse/lammps.d.ts +0 -5
- package/dist/trajectory/parse/lammps.js +0 -179
- package/dist/trajectory/parse/vasp.d.ts +0 -2
- package/dist/trajectory/parse/vasp.js +0 -68
- package/dist/trajectory/parse/xyz.d.ts +0 -2
- package/dist/trajectory/parse/xyz.js +0 -110
- package/dist/trajectory/plotting.d.ts +0 -28
- package/dist/trajectory/plotting.js +0 -423
- package/dist/trajectory/types.d.ts +0 -11
- package/dist/trajectory/types.js +0 -1
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- package/dist/utils.js +0 -36
- package/dist/xrd/XrdPlot.svelte +0 -615
- package/dist/xrd/XrdPlot.svelte.d.ts +0 -28
- package/dist/xrd/broadening.d.ts +0 -20
- package/dist/xrd/broadening.js +0 -97
- package/dist/xrd/calc-xrd.d.ts +0 -37
- package/dist/xrd/calc-xrd.js +0 -337
- package/dist/xrd/index.d.ts +0 -37
- package/dist/xrd/index.js +0 -4
- package/dist/xrd/parse.d.ts +0 -13
- package/dist/xrd/parse.js +0 -749
- /package/dist/{EmptyState.svelte → src/lib/EmptyState.svelte} +0 -0
- /package/dist/{Icon.svelte → src/lib/Icon.svelte} +0 -0
- /package/dist/{chempot-diagram → src/lib/chempot-diagram}/ChemPotScene3D.svelte +0 -0
- /package/dist/{colors → src/lib/colors}/alloy-colors.json +0 -0
- /package/dist/{colors → src/lib/colors}/dark-mode-colors.json +0 -0
- /package/dist/{colors → src/lib/colors}/jmol-colors.json +0 -0
- /package/dist/{colors → src/lib/colors}/muted-colors.json +0 -0
- /package/dist/{colors → src/lib/colors}/pastel-colors.json +0 -0
- /package/dist/{colors → src/lib/colors}/vesta-colors.json +0 -0
- /package/dist/{element → src/lib/element}/Nucleus.svelte +0 -0
- /package/dist/{element → src/lib/element}/data.json +0 -0
- /package/dist/{element → src/lib/element}/data.json.gz +0 -0
- /package/dist/{element → src/lib/element}/data.schema.json +0 -0
- /package/dist/{element-image-urls.json → src/lib/element-image-urls.json} +0 -0
- /package/dist/{feedback → src/lib/feedback}/Spinner.svelte +0 -0
- /package/dist/{feedback → src/lib/feedback}/StatusMessage.svelte +0 -0
- /package/dist/{periodic-table → src/lib/periodic-table}/TableInset.svelte +0 -0
- /package/dist/{plot → src/lib/plot}/ReferenceLine.svelte +0 -0
- /package/dist/{xrd → src/lib/xrd}/atomic_scattering_params.json +0 -0
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import * as constants from './constants';
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import { compute_vertex_normals } from './marching-cubes';
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const parse_number_tokens = (line) => line.split(/\s+/).filter(Boolean);
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// Parse whitespace-separated floats from a line (optimized with unary +)
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function parse_floats(line) {
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return parse_number_tokens(line).map((part) => +part);
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}
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function parse_ints(line) {
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return parse_number_tokens(line).map((part) => parseInt(part, 10));
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}
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// Parse BXSF (Band-XSF) format used by XCrySDen, Quantum ESPRESSO, etc.
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// Format specification: http://www.xcrysden.org/doc/XSF.html
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function parse_bxsf(content) {
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const lines = content.split(/\r?\n/).map((line) => line.trim());
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return line;
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throw new Error(`Unexpected end of BXSF file`);
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};
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}
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next_line();
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if (!bandgrid_line.includes(`BANDGRID_3D`)) {
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throw new Error(`Expected BANDGRID_3D header, got: ${bandgrid_line}`);
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}
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throw new Error(`Expected 3 grid dimensions, got ${grid_dims.length}`);
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}
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const k_grid = [grid_dims[0], grid_dims[1], grid_dims[2]];
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// Parse origin
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throw new Error(`Expected 3 origin values, got ${origin_vals.length}`);
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}
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const origin = [origin_vals[0], origin_vals[1], origin_vals[2]];
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// Parse 3 spanning vectors (reciprocal lattice)
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const spanning_vectors = [
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parse_floats(next_line()).slice(0, 3),
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parse_floats(next_line()).slice(0, 3),
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parse_floats(next_line()).slice(0, 3),
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// Parse band data
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// Format: BAND: band_number followed by energy values on grid
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const [nx, ny, nz] = k_grid;
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for (let band_idx = 0; band_idx < n_bands; band_idx++) {
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// Find BAND: line
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}
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// Read energy values for this band
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while (energy_values.length < total_points) {
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const line = next_line();
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if (line.startsWith(`END_BANDGRID`) || line.startsWith(`BAND:`)) {
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break;
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}
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energy_values.push(...parse_floats(line));
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}
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if (energy_values.length < total_points) {
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throw new Error(`Band ${band_idx}: expected ${total_points} values, got ${energy_values.length}`);
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}
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// Reshape into 3D grid [kx][ky][kz] (preallocated for speed)
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const band_grid = new Array(nx);
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let val_idx = 0;
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for (let ix = 0; ix < nx; ix++) {
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const iy_arr = new Array(ny);
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for (let iy = 0; iy < ny; iy++) {
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const iz_arr = energy_values.slice(val_idx, val_idx + nz);
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val_idx += nz;
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iy_arr[iy] = iz_arr;
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}
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band_grid[ix] = iy_arr;
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}
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energies[0].push(band_grid);
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}
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// Try to find Fermi energy (often in a comment or as FERMI_ENERGY keyword)
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let fermi_energy = 0;
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for (const line of lines) {
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if (lower.includes(`fermi`) && lower.includes(`energy`)) {
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// Match patterns like "Fermi Energy = 5.123" or "fermi_energy: -0.5"
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const match = /(?:=|:)\s*([-+]?\d*\.?\d+(?:[eE][-+]?\d+)?)/i.exec(line);
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if (match) {
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fermi_energy = parseFloat(match[1]);
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break;
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}
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}
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}
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return {
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energies,
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k_grid,
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k_lattice: spanning_vectors,
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fermi_energy,
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n_bands,
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n_spins: 1,
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origin,
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};
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}
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// Parse FRMSF format used by FermiSurfer
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// Format: https://mitsuaki1987.github.io/fermisurfer/en/_build/html/ops.html
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function parse_frmsf(content) {
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const lines = content
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.split(/\r?\n/)
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.map((line) => line.trim())
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.filter(Boolean);
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let line_idx = 0;
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// Line 1: grid dimensions (ng[0] ng[1] ng[2])
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const grid_dims = parse_ints(lines[line_idx++]);
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if (grid_dims.length !== 3) {
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throw new Error(`FRMSF: Expected 3 grid dimensions`);
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}
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const k_grid = [grid_dims[0], grid_dims[1], grid_dims[2]];
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// Line 2: lshift (grid shift type)
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// 0 = Monkhorst-Pack grid (shifted)
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// 1 = Gamma-centered grid
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// 2 = Gamma + half grid shift
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const lshift = parseInt(lines[line_idx++], 10);
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if (isNaN(lshift) || lshift < 0 || lshift > 2) {
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throw new Error(`FRMSF: Invalid lshift value (expected 0, 1, or 2)`);
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}
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// Line 3: number of bands
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const n_bands = parseInt(lines[line_idx++], 10);
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if (isNaN(n_bands) || n_bands <= 0) {
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throw new Error(`FRMSF: Invalid number of bands`);
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}
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// FRMSF format has single spin channel (no spin-polarized support in standard format)
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const n_spins = 1;
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// Lines 4-6: reciprocal lattice vectors (in Bohr^-1, convert to Å^-1)
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const inv_bohr = 1 / constants.BOHR_TO_ANGSTROM;
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const k_lattice = [
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parse_floats(lines[line_idx++])
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.slice(0, 3)
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.map((val) => val * inv_bohr),
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171
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parse_floats(lines[line_idx++])
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.slice(0, 3)
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.map((val) => val * inv_bohr),
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parse_floats(lines[line_idx++])
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.slice(0, 3)
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.map((val) => val * inv_bohr),
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];
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const [nx, ny, nz] = k_grid;
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const total_points = nx * ny * nz;
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// Parse band energies for each spin and band
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// FRMSF format: one energy value per line per grid point. Any additional columns
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|
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// (e.g. auxiliary color/velocity data) are ignored to prevent grid corruption.
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const energies = [];
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for (let spin_idx = 0; spin_idx < n_spins; spin_idx++) {
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energies[spin_idx] = [];
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|
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for (let band_idx = 0; band_idx < n_bands; band_idx++) {
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|
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const energy_values = [];
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// Read energy values (first value per line only, ignore auxiliary columns)
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|
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while (energy_values.length < total_points && line_idx < lines.length) {
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190
|
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const line = lines[line_idx];
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191
|
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const first_token = line?.split(/\s+/)[0];
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if (first_token && !isNaN(parseFloat(first_token))) {
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|
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energy_values.push(parseFloat(first_token));
|
|
194
|
-
line_idx++;
|
|
195
|
-
}
|
|
196
|
-
else {
|
|
197
|
-
break;
|
|
198
|
-
}
|
|
199
|
-
}
|
|
200
|
-
if (energy_values.length < total_points) {
|
|
201
|
-
throw new Error(`FRMSF spin ${spin_idx} band ${band_idx}: expected ${total_points} values, got ${energy_values.length}`);
|
|
202
|
-
}
|
|
203
|
-
// Reshape into 3D grid [kx][ky][kz]
|
|
204
|
-
const band_grid = [];
|
|
205
|
-
let val_idx = 0;
|
|
206
|
-
for (let ix = 0; ix < nx; ix++) {
|
|
207
|
-
band_grid[ix] = [];
|
|
208
|
-
for (let iy = 0; iy < ny; iy++) {
|
|
209
|
-
band_grid[ix][iy] = [];
|
|
210
|
-
for (let iz = 0; iz < nz; iz++) {
|
|
211
|
-
// FRMSF uses Hartree, convert to eV
|
|
212
|
-
band_grid[ix][iy][iz] = energy_values[val_idx++] * constants.HARTREE_TO_EV;
|
|
213
|
-
}
|
|
214
|
-
}
|
|
215
|
-
}
|
|
216
|
-
energies[spin_idx].push(band_grid);
|
|
217
|
-
}
|
|
218
|
-
}
|
|
219
|
-
return {
|
|
220
|
-
energies,
|
|
221
|
-
k_grid,
|
|
222
|
-
k_lattice,
|
|
223
|
-
fermi_energy: 0, // FRMSF typically expects Fermi level at 0
|
|
224
|
-
n_bands,
|
|
225
|
-
n_spins,
|
|
226
|
-
};
|
|
227
|
-
}
|
|
228
|
-
// Validate that an object has the required Isosurface shape
|
|
229
|
-
function is_valid_isosurface(obj) {
|
|
230
|
-
if (!obj || typeof obj !== `object`)
|
|
231
|
-
return false;
|
|
232
|
-
const isosurface_obj = obj;
|
|
233
|
-
const vertices = isosurface_obj.vertices;
|
|
234
|
-
const faces = isosurface_obj.faces;
|
|
235
|
-
const normals = isosurface_obj.normals;
|
|
236
|
-
const band_index = isosurface_obj.band_index;
|
|
237
|
-
const spin = isosurface_obj.spin;
|
|
238
|
-
if (!Array.isArray(vertices) || vertices.length === 0)
|
|
239
|
-
return false;
|
|
240
|
-
if (!Array.isArray(faces))
|
|
241
|
-
return false;
|
|
242
|
-
if (!Array.isArray(normals))
|
|
243
|
-
return false;
|
|
244
|
-
if (typeof band_index !== `number` || !Number.isFinite(band_index))
|
|
245
|
-
return false;
|
|
246
|
-
if (spin !== null && spin !== `up` && spin !== `down`)
|
|
247
|
-
return false;
|
|
248
|
-
return true;
|
|
249
|
-
}
|
|
250
|
-
// Validate FermiSurfaceData shape
|
|
251
|
-
function is_valid_fermi_surface_data(obj) {
|
|
252
|
-
if (!obj || typeof obj !== `object`)
|
|
253
|
-
return false;
|
|
254
|
-
const data = obj;
|
|
255
|
-
// Check required fields
|
|
256
|
-
if (!Array.isArray(data.isosurfaces))
|
|
257
|
-
return false;
|
|
258
|
-
if (!Array.isArray(data.k_lattice) || data.k_lattice.length !== 3)
|
|
259
|
-
return false;
|
|
260
|
-
if (typeof data.fermi_energy !== `number`)
|
|
261
|
-
return false;
|
|
262
|
-
if (data.reciprocal_cell !== `wigner_seitz` && data.reciprocal_cell !== `parallelepiped`) {
|
|
263
|
-
return false;
|
|
264
|
-
}
|
|
265
|
-
if (!data.metadata || typeof data.metadata !== `object`)
|
|
266
|
-
return false;
|
|
267
|
-
// Validate each isosurface
|
|
268
|
-
for (const iso of data.isosurfaces) {
|
|
269
|
-
if (!is_valid_isosurface(iso))
|
|
270
|
-
return false;
|
|
271
|
-
}
|
|
272
|
-
return true;
|
|
273
|
-
}
|
|
274
|
-
// Parse Matterviz/IFermi JSON format for Fermi surface data
|
|
275
|
-
// Throws on invalid input; returns parsed data on success
|
|
276
|
-
function parse_fermi_json(content) {
|
|
277
|
-
const data = JSON.parse(content);
|
|
278
|
-
// Check if it's already in our FermiSurfaceData format with full validation
|
|
279
|
-
if (data.isosurfaces && Array.isArray(data.isosurfaces)) {
|
|
280
|
-
if (is_valid_fermi_surface_data(data)) {
|
|
281
|
-
return data;
|
|
282
|
-
}
|
|
283
|
-
throw new Error(`Invalid FermiSurfaceData JSON: isosurfaces array present but missing required fields`);
|
|
284
|
-
}
|
|
285
|
-
// Check if it's IFermi format (isosurfaces is an object keyed by band index)
|
|
286
|
-
if (data[`@class`] === `FermiSurface` &&
|
|
287
|
-
data.isosurfaces &&
|
|
288
|
-
typeof data.isosurfaces === `object`) {
|
|
289
|
-
return parse_ifermi_surface(data);
|
|
290
|
-
}
|
|
291
|
-
// Check if it's BandGridData (raw grid data)
|
|
292
|
-
if (data.energies && data.k_grid && data.k_lattice) {
|
|
293
|
-
// Minimal validation of required fields
|
|
294
|
-
if (!Array.isArray(data.energies) ||
|
|
295
|
-
!Array.isArray(data.k_grid) ||
|
|
296
|
-
data.k_grid.length !== 3 ||
|
|
297
|
-
!Array.isArray(data.k_lattice) ||
|
|
298
|
-
data.k_lattice.length !== 3)
|
|
299
|
-
throw new Error(`Invalid BandGridData JSON: malformed required fields`);
|
|
300
|
-
return data;
|
|
301
|
-
}
|
|
302
|
-
// Try to extract from nested structure (e.g. IFermi output)
|
|
303
|
-
if (data.fermi_surface) {
|
|
304
|
-
return data.fermi_surface;
|
|
305
|
-
}
|
|
306
|
-
if (data.band_structure?.energies || data.bands?.energies) {
|
|
307
|
-
const bs = data.band_structure || data.bands;
|
|
308
|
-
return {
|
|
309
|
-
energies: bs.energies,
|
|
310
|
-
k_grid: bs.k_grid || bs.kgrid,
|
|
311
|
-
k_lattice: bs.k_lattice || bs.reciprocal_lattice,
|
|
312
|
-
fermi_energy: bs.fermi_energy || bs.efermi || 0,
|
|
313
|
-
n_bands: bs.n_bands || bs.nbands || bs.energies[0]?.length || 0,
|
|
314
|
-
n_spins: bs.n_spins || bs.nspins || bs.energies.length || 1,
|
|
315
|
-
};
|
|
316
|
-
}
|
|
317
|
-
// Check for pymatgen BandStructure format (k-path, not k-grid)
|
|
318
|
-
// These files cannot be used for Fermi surface visualization directly
|
|
319
|
-
if (data.bs?.[`@class`] === `BandStructure` || data[`@class`] === `BandStructure`) {
|
|
320
|
-
throw new Error(`This is a pymatgen BandStructure file (band data along k-path). ` +
|
|
321
|
-
`Fermi surface visualization requires a uniform 3D k-grid of eigenvalues. ` +
|
|
322
|
-
`Use IFermi or a BXSF/FRMSF file instead.`);
|
|
323
|
-
}
|
|
324
|
-
throw new Error(`Unrecognized JSON format: missing required fields for Fermi surface data`);
|
|
325
|
-
}
|
|
326
|
-
// Parse IFermi's JSON output format
|
|
327
|
-
function parse_ifermi_surface(data) {
|
|
328
|
-
const isosurfaces_obj = data.isosurfaces;
|
|
329
|
-
const reciprocal_space = data.reciprocal_space;
|
|
330
|
-
// Extract reciprocal lattice
|
|
331
|
-
const k_lattice = reciprocal_space?.reciprocal_lattice
|
|
332
|
-
? reciprocal_space.reciprocal_lattice
|
|
333
|
-
: [
|
|
334
|
-
[1, 0, 0],
|
|
335
|
-
[0, 1, 0],
|
|
336
|
-
[0, 0, 1],
|
|
337
|
-
];
|
|
338
|
-
// Convert IFermi isosurfaces to our format
|
|
339
|
-
const isosurfaces = [];
|
|
340
|
-
const band_indices = new Set();
|
|
341
|
-
let has_spin = false;
|
|
342
|
-
for (const [band_key, iso_list] of Object.entries(isosurfaces_obj)) {
|
|
343
|
-
const band_index = parseInt(band_key, 10);
|
|
344
|
-
// spin is determined by sign: positive = up, negative = down
|
|
345
|
-
const spin = band_index < 0 ? `down` : `up`;
|
|
346
|
-
const abs_band_idx = Math.abs(band_index);
|
|
347
|
-
band_indices.add(abs_band_idx);
|
|
348
|
-
if (band_index < 0)
|
|
349
|
-
has_spin = true;
|
|
350
|
-
for (const ifermi_iso of iso_list) {
|
|
351
|
-
const vertices = ifermi_iso.vertices;
|
|
352
|
-
const faces = ifermi_iso.faces;
|
|
353
|
-
// Compute vertex normals from faces
|
|
354
|
-
const normals = compute_vertex_normals(vertices, faces);
|
|
355
|
-
// Extract properties if available
|
|
356
|
-
let properties;
|
|
357
|
-
if (ifermi_iso.properties) {
|
|
358
|
-
// IFermi stores properties like fermi_velocity, spin, etc.
|
|
359
|
-
const prop_keys = Object.keys(ifermi_iso.properties);
|
|
360
|
-
if (prop_keys.length > 0) {
|
|
361
|
-
// Use first available property as vertex colors
|
|
362
|
-
properties = ifermi_iso.properties[prop_keys[0]];
|
|
363
|
-
}
|
|
364
|
-
}
|
|
365
|
-
// Parse dimensionality
|
|
366
|
-
let dimensionality;
|
|
367
|
-
if (ifermi_iso.dimensionality) {
|
|
368
|
-
const dim = ifermi_iso.dimensionality.toLowerCase();
|
|
369
|
-
if (dim.includes(`1d`) || dim === `1d`)
|
|
370
|
-
dimensionality = `1D`;
|
|
371
|
-
else if (dim.includes(`quasi`) || dim === `quasi-2d`)
|
|
372
|
-
dimensionality = `quasi-2D`;
|
|
373
|
-
else if (dim.includes(`2d`) || dim === `2d`)
|
|
374
|
-
dimensionality = `2D`;
|
|
375
|
-
else if (dim.includes(`3d`) || dim === `3d`)
|
|
376
|
-
dimensionality = `3D`;
|
|
377
|
-
}
|
|
378
|
-
// Compute area for this isosurface using fan triangulation for N-gons
|
|
379
|
-
let area = 0;
|
|
380
|
-
for (const face of faces) {
|
|
381
|
-
if (face.length < 3)
|
|
382
|
-
continue;
|
|
383
|
-
// Validate face indices are within bounds to prevent NaN from undefined vertices
|
|
384
|
-
if (face.some((idx) => idx < 0 || idx >= vertices.length))
|
|
385
|
-
continue;
|
|
386
|
-
// Fan triangulation: for N vertices, create N-2 triangles (0,1,2), (0,2,3), ...
|
|
387
|
-
const v0 = vertices[face[0]];
|
|
388
|
-
for (let fan_idx = 1; fan_idx < face.length - 1; fan_idx++) {
|
|
389
|
-
const v1 = vertices[face[fan_idx]];
|
|
390
|
-
const v2 = vertices[face[fan_idx + 1]];
|
|
391
|
-
const e1 = [v1[0] - v0[0], v1[1] - v0[1], v1[2] - v0[2]];
|
|
392
|
-
const e2 = [v2[0] - v0[0], v2[1] - v0[1], v2[2] - v0[2]];
|
|
393
|
-
const cross = [
|
|
394
|
-
e1[1] * e2[2] - e1[2] * e2[1],
|
|
395
|
-
e1[2] * e2[0] - e1[0] * e2[2],
|
|
396
|
-
e1[0] * e2[1] - e1[1] * e2[0],
|
|
397
|
-
];
|
|
398
|
-
area += 0.5 * Math.hypot(cross[0], cross[1], cross[2]);
|
|
399
|
-
}
|
|
400
|
-
}
|
|
401
|
-
isosurfaces.push({
|
|
402
|
-
vertices,
|
|
403
|
-
faces,
|
|
404
|
-
normals,
|
|
405
|
-
properties,
|
|
406
|
-
band_index: abs_band_idx,
|
|
407
|
-
spin,
|
|
408
|
-
area,
|
|
409
|
-
dimensionality,
|
|
410
|
-
orientation: ifermi_iso.orientation,
|
|
411
|
-
});
|
|
412
|
-
}
|
|
413
|
-
}
|
|
414
|
-
// Compute total surface area
|
|
415
|
-
const total_area = isosurfaces.reduce((sum, iso) => sum + (iso.area || 0), 0);
|
|
416
|
-
return {
|
|
417
|
-
isosurfaces,
|
|
418
|
-
k_lattice,
|
|
419
|
-
fermi_energy: 0, // IFermi surfaces are typically relative to Fermi level
|
|
420
|
-
reciprocal_cell: `wigner_seitz`, // IFermi typically uses Wigner-Seitz cells
|
|
421
|
-
metadata: {
|
|
422
|
-
n_bands: band_indices.size,
|
|
423
|
-
n_surfaces: isosurfaces.length,
|
|
424
|
-
total_area,
|
|
425
|
-
source_format: `ifermi-json`,
|
|
426
|
-
has_spin,
|
|
427
|
-
has_velocities: isosurfaces.some((iso) => iso.properties !== undefined),
|
|
428
|
-
},
|
|
429
|
-
};
|
|
430
|
-
}
|
|
431
|
-
// Auto-detect file format and parse accordingly
|
|
432
|
-
export function parse_fermi_file(content, filename) {
|
|
433
|
-
const lower_name = filename?.toLowerCase() || ``;
|
|
434
|
-
// Detect by filename extension
|
|
435
|
-
if (lower_name.endsWith(`.bxsf`) || lower_name.endsWith(`.bxsf.gz`)) {
|
|
436
|
-
try {
|
|
437
|
-
return parse_bxsf(content);
|
|
438
|
-
}
|
|
439
|
-
catch (error) {
|
|
440
|
-
console.error(`BXSF parse error:`, error);
|
|
441
|
-
return null;
|
|
442
|
-
}
|
|
443
|
-
}
|
|
444
|
-
if (lower_name.endsWith(`.frmsf`) || lower_name.endsWith(`.frmsf.gz`)) {
|
|
445
|
-
try {
|
|
446
|
-
return parse_frmsf(content);
|
|
447
|
-
}
|
|
448
|
-
catch (error) {
|
|
449
|
-
console.error(`FRMSF parse error:`, error);
|
|
450
|
-
return null;
|
|
451
|
-
}
|
|
452
|
-
}
|
|
453
|
-
if (lower_name.endsWith(`.json`) || lower_name.endsWith(`.json.gz`)) {
|
|
454
|
-
try {
|
|
455
|
-
return parse_fermi_json(content);
|
|
456
|
-
}
|
|
457
|
-
catch (error) {
|
|
458
|
-
console.error(`JSON parse error:`, error);
|
|
459
|
-
return null;
|
|
460
|
-
}
|
|
461
|
-
}
|
|
462
|
-
// Try auto-detection based on content
|
|
463
|
-
const trimmed = content.trim();
|
|
464
|
-
// BXSF format detection
|
|
465
|
-
if (trimmed.includes(`BEGIN_BLOCK_BANDGRID_3D`) || trimmed.includes(`BEGIN_BANDGRID_3D`)) {
|
|
466
|
-
try {
|
|
467
|
-
return parse_bxsf(content);
|
|
468
|
-
}
|
|
469
|
-
catch (error) {
|
|
470
|
-
console.error(`BXSF auto-detect parse error:`, error);
|
|
471
|
-
}
|
|
472
|
-
}
|
|
473
|
-
// JSON format detection
|
|
474
|
-
if (trimmed.startsWith(`{`) || trimmed.startsWith(`[`)) {
|
|
475
|
-
try {
|
|
476
|
-
return parse_fermi_json(content);
|
|
477
|
-
}
|
|
478
|
-
catch (error) {
|
|
479
|
-
console.error(`JSON auto-detect parse error:`, error);
|
|
480
|
-
}
|
|
481
|
-
}
|
|
482
|
-
// FRMSF format detection (starts with grid dimensions)
|
|
483
|
-
const first_line = trimmed.split(/\r?\n/)[0];
|
|
484
|
-
const first_tokens = first_line.split(/\s+/).filter(Boolean);
|
|
485
|
-
if (first_tokens.length === 3 && first_tokens.every((t) => /^\d+$/.test(t))) {
|
|
486
|
-
try {
|
|
487
|
-
return parse_frmsf(content);
|
|
488
|
-
}
|
|
489
|
-
catch (error) {
|
|
490
|
-
console.error(`FRMSF auto-detect parse error:`, error);
|
|
491
|
-
}
|
|
492
|
-
}
|
|
493
|
-
console.warn(`Could not detect Fermi surface file format for: ${filename}`);
|
|
494
|
-
return null;
|
|
495
|
-
}
|
|
@@ -1,46 +0,0 @@
|
|
|
1
|
-
// Identity 4x4 matrix (column-major for Three.js)
|
|
2
|
-
// oxfmt-ignore
|
|
3
|
-
export const IDENTITY_4x4 = [1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1, 0, 0, 0, 0, 1];
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4
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// All permutations of (0, 1, 2) for axis swaps
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5
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-
const AXIS_PERMUTATIONS = [
|
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6
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[0, 1, 2],
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7
|
-
[0, 2, 1],
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8
|
-
[1, 0, 2],
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9
|
-
[1, 2, 0],
|
|
10
|
-
[2, 0, 1],
|
|
11
|
-
[2, 1, 0],
|
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12
|
-
];
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13
|
-
// All sign combinations for coordinate flips
|
|
14
|
-
const SIGN_COMBINATIONS = [
|
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15
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-
[1, 1, 1],
|
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16
|
-
[1, 1, -1],
|
|
17
|
-
[1, -1, 1],
|
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18
|
-
[1, -1, -1],
|
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19
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[-1, 1, 1],
|
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20
|
-
[-1, 1, -1],
|
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21
|
-
[-1, -1, 1],
|
|
22
|
-
[-1, -1, -1],
|
|
23
|
-
];
|
|
24
|
-
// Generate the 48 symmetry operations of the cubic Oh point group.
|
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25
|
-
// These are all combinations of axis permutations (6) and sign flips (8).
|
|
26
|
-
// Used to tile the irreducible BZ to fill the full first Brillouin zone.
|
|
27
|
-
function generate_oh_symmetry_matrices() {
|
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28
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-
const matrices = [];
|
|
29
|
-
for (const perm of AXIS_PERMUTATIONS) {
|
|
30
|
-
for (const sign of SIGN_COMBINATIONS) {
|
|
31
|
-
// Column-major 4x4 matrix: element at (row, col) is at index col*4 + row
|
|
32
|
-
const mat = new Array(16).fill(0);
|
|
33
|
-
mat[15] = 1; // w component
|
|
34
|
-
// Build 3x3 rotation part: M[row][col] = sign[row] if perm[row] === col
|
|
35
|
-
for (let col = 0; col < 3; col++) {
|
|
36
|
-
for (let row = 0; row < 3; row++) {
|
|
37
|
-
mat[col * 4 + row] = perm[row] === col ? sign[row] : 0;
|
|
38
|
-
}
|
|
39
|
-
}
|
|
40
|
-
matrices.push(mat);
|
|
41
|
-
}
|
|
42
|
-
}
|
|
43
|
-
return matrices;
|
|
44
|
-
}
|
|
45
|
-
// Pre-computed Oh symmetry matrices (48 operations)
|
|
46
|
-
export const OH_SYMMETRY_MATRICES = generate_oh_symmetry_matrices();
|
|
@@ -1,113 +0,0 @@
|
|
|
1
|
-
import type { Matrix3x3, Vec3 } from '../math';
|
|
2
|
-
import type { TooltipConfig, TooltipProp } from '../tooltip';
|
|
3
|
-
export type SpinChannel = `up` | `down` | null;
|
|
4
|
-
export type RepresentationMode = `solid` | `wireframe` | `transparent`;
|
|
5
|
-
export type ColorProperty = `band` | `velocity` | `spin` | `custom`;
|
|
6
|
-
export type ReciprocalCellType = `wigner_seitz` | `parallelepiped`;
|
|
7
|
-
export type SurfaceDimensionality = `1D` | `2D` | `quasi-2D` | `3D`;
|
|
8
|
-
export interface Isosurface {
|
|
9
|
-
vertices: Vec3[];
|
|
10
|
-
faces: number[][];
|
|
11
|
-
normals: Vec3[];
|
|
12
|
-
properties?: number[];
|
|
13
|
-
vector_properties?: Vec3[];
|
|
14
|
-
band_index: number;
|
|
15
|
-
spin: SpinChannel;
|
|
16
|
-
area?: number;
|
|
17
|
-
dimensionality?: SurfaceDimensionality;
|
|
18
|
-
orientation?: Vec3 | null;
|
|
19
|
-
avg_velocity?: number;
|
|
20
|
-
}
|
|
21
|
-
export interface FermiSurfaceData {
|
|
22
|
-
isosurfaces: Isosurface[];
|
|
23
|
-
k_lattice: Matrix3x3;
|
|
24
|
-
fermi_energy: number;
|
|
25
|
-
reciprocal_cell: ReciprocalCellType;
|
|
26
|
-
metadata: FermiSurfaceMetadata;
|
|
27
|
-
}
|
|
28
|
-
export interface FermiSurfaceMetadata {
|
|
29
|
-
n_bands: number;
|
|
30
|
-
n_surfaces: number;
|
|
31
|
-
total_area: number;
|
|
32
|
-
source_format?: string;
|
|
33
|
-
source_file?: string;
|
|
34
|
-
has_spin?: boolean;
|
|
35
|
-
has_velocities?: boolean;
|
|
36
|
-
has_spin_texture?: boolean;
|
|
37
|
-
is_irreducible?: boolean;
|
|
38
|
-
}
|
|
39
|
-
export type EnergyGrid5D = number[][][][][];
|
|
40
|
-
export type VectorGrid5D = Vec3[][][][][];
|
|
41
|
-
export interface BandGridData {
|
|
42
|
-
energies: EnergyGrid5D;
|
|
43
|
-
k_grid: Vec3;
|
|
44
|
-
k_lattice: Matrix3x3;
|
|
45
|
-
fermi_energy: number;
|
|
46
|
-
velocities?: VectorGrid5D;
|
|
47
|
-
spin_texture?: VectorGrid5D;
|
|
48
|
-
n_bands: number;
|
|
49
|
-
n_spins: number;
|
|
50
|
-
origin?: Vec3;
|
|
51
|
-
}
|
|
52
|
-
export interface FermiSliceData {
|
|
53
|
-
isolines: Isoline[];
|
|
54
|
-
plane_normal: Vec3;
|
|
55
|
-
plane_distance: number;
|
|
56
|
-
k_lattice_2d: [Vec3, Vec3];
|
|
57
|
-
metadata: {
|
|
58
|
-
n_lines: number;
|
|
59
|
-
has_properties: boolean;
|
|
60
|
-
};
|
|
61
|
-
}
|
|
62
|
-
export interface Isoline {
|
|
63
|
-
points: Vec3[];
|
|
64
|
-
points_2d: [number, number][];
|
|
65
|
-
properties?: number[];
|
|
66
|
-
band_index: number;
|
|
67
|
-
spin: SpinChannel;
|
|
68
|
-
is_closed: boolean;
|
|
69
|
-
}
|
|
70
|
-
export interface FermiSurfaceOptions {
|
|
71
|
-
mu?: number;
|
|
72
|
-
wigner_seitz?: boolean;
|
|
73
|
-
compute_velocities?: boolean;
|
|
74
|
-
compute_dimensionality?: boolean;
|
|
75
|
-
selected_bands?: number[];
|
|
76
|
-
selected_spins?: SpinChannel[];
|
|
77
|
-
interpolation_factor?: number;
|
|
78
|
-
}
|
|
79
|
-
export interface FermiSliceOptions {
|
|
80
|
-
miller_indices?: Vec3;
|
|
81
|
-
distance?: number;
|
|
82
|
-
}
|
|
83
|
-
export interface FermiFileLoadData {
|
|
84
|
-
fermi_data?: FermiSurfaceData;
|
|
85
|
-
band_data?: BandGridData;
|
|
86
|
-
filename: string;
|
|
87
|
-
file_size: number;
|
|
88
|
-
}
|
|
89
|
-
export interface FermiErrorData {
|
|
90
|
-
error_msg: string;
|
|
91
|
-
filename?: string;
|
|
92
|
-
}
|
|
93
|
-
export interface FermiHoverData {
|
|
94
|
-
band_index: number;
|
|
95
|
-
spin: SpinChannel;
|
|
96
|
-
position_cartesian: Vec3;
|
|
97
|
-
position_fractional: Vec3 | null;
|
|
98
|
-
screen_position: {
|
|
99
|
-
x: number;
|
|
100
|
-
y: number;
|
|
101
|
-
};
|
|
102
|
-
surface_color?: string;
|
|
103
|
-
property_value?: number;
|
|
104
|
-
property_name?: string;
|
|
105
|
-
is_tiled?: boolean;
|
|
106
|
-
symmetry_index?: number;
|
|
107
|
-
}
|
|
108
|
-
export type FermiTooltipConfig = TooltipConfig<FermiHoverData>;
|
|
109
|
-
export type FermiTooltipProp = TooltipProp<FermiHoverData, [{
|
|
110
|
-
hover_data: FermiHoverData;
|
|
111
|
-
}]>;
|
|
112
|
-
export declare const is_fermi_surface_data: (data: BandGridData | FermiSurfaceData | null) => data is FermiSurfaceData;
|
|
113
|
-
export declare const is_band_grid_data: (data: BandGridData | FermiSurfaceData | null) => data is BandGridData;
|
|
@@ -1,4 +0,0 @@
|
|
|
1
|
-
// Type guard: checks if parsed result is FermiSurfaceData (has pre-computed isosurfaces)
|
|
2
|
-
export const is_fermi_surface_data = (data) => data !== null && `isosurfaces` in data;
|
|
3
|
-
// Type guard: checks if parsed result is BandGridData (raw band grid, needs extraction)
|
|
4
|
-
export const is_band_grid_data = (data) => data !== null && `energies` in data;
|