jbrowse-plugin-protein3d 0.0.2

package/dist/ProteinView/model.js

@@ -0,0 +1,324 @@
+import { autorun } from 'mobx';
+import { BaseViewModel } from '@jbrowse/core/pluggableElementTypes';
+import { ElementId, Region } from '@jbrowse/core/util/types/mst';
+import { addDisposer, cast, types } from 'mobx-state-tree';
+import { SimpleFeature, getSession, } from '@jbrowse/core/util';
+// locals
+import { checkHovered, invertMap, toStr } from './util';
+import { launchPairwiseAlignment } from './launchRemotePairwiseAlignment';
+import { structureSeqVsTranscriptSeqMap, genomeToTranscriptSeqMapping, structurePositionToAlignmentMap, transcriptPositionToAlignmentMap, } from '../mappings';
+/**
+ * #stateModel Protein3dViewPlugin
+ * extends
+ * - BaseViewModel
+ */
+function stateModelFactory() {
+    return types
+        .compose(BaseViewModel, types.model({
+        /**
+         * #property
+         */
+        id: ElementId,
+        /**
+         * #property
+         */
+        type: types.literal('ProteinView'),
+        /**
+         * #property
+         * url to structure file
+         */
+        url: types.maybe(types.string),
+        /**
+         * #property
+         * full string for structure data
+         */
+        data: types.maybe(types.string),
+        /**
+         * #property
+         */
+        clickGenomeHighlights: types.array(Region),
+        /**
+         * #property
+         */
+        hoverGenomeHighlights: types.array(Region),
+        /**
+         * #property
+         */
+        showControls: true,
+        /**
+         * #property
+         */
+        height: types.optional(types.number, 650),
+        /**
+         * #property
+         */
+        feature: types.frozen(),
+        /**
+         * #property
+         */
+        seq1: types.maybe(types.string),
+        /**
+         * #property
+         */
+        seq2: types.maybe(types.string),
+        /**
+         * #property
+         */
+        alignment: types.frozen(),
+        /**
+         * #property
+         */
+        connectedViewId: types.maybe(types.string),
+        /**
+         * #property
+         */
+        showHighlight: true,
+        /**
+         * #property
+         */
+        zoomToBaseLevel: false,
+        /**
+         * #property
+         */
+        showAlignment: true,
+    }))
+        .volatile(() => ({
+        /**
+         * #volatile
+         */
+        error: undefined,
+        /**
+         * #volatile
+         */
+        clickPosition: undefined,
+        /**
+         * #volatile
+         */
+        hoverPosition: undefined,
+        /**
+         * #volatile
+         */
+        progress: '',
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get connectedView() {
+            const { views } = getSession(self);
+            return views.find(f => f.id === self.connectedViewId);
+        },
+    }))
+        .actions(self => ({
+        /**
+         * #action
+         */
+        setShowAlignment(f) {
+            self.showAlignment = f;
+        },
+        /**
+         * #action
+         */
+        setHoveredPosition(arg) {
+            self.hoverPosition = arg;
+        },
+        /**
+         * #action
+         */
+        setSeqs(str1, str2) {
+            self.seq1 = str1;
+            self.seq2 = str2;
+        },
+        /**
+         * #action
+         */
+        setShowControls(arg) {
+            self.showControls = arg;
+        },
+        /**
+         * #action
+         */
+        setProgress(str) {
+            self.progress = str;
+        },
+        /**
+         * #action
+         */
+        setClickedPosition(arg) {
+            self.clickPosition = arg;
+        },
+        /**
+         * #action
+         */
+        setClickGenomeHighlights(r) {
+            self.clickGenomeHighlights = cast(r);
+        },
+        /**
+         * #action
+         */
+        clearClickGenomeHighlights() {
+            self.clickGenomeHighlights = cast([]);
+        },
+        /**
+         * #action
+         */
+        setHoverGenomeHighlights(r) {
+            self.hoverGenomeHighlights = cast(r);
+        },
+        /**
+         * #action
+         */
+        clearHoverGenomeHighlights() {
+            self.hoverGenomeHighlights = cast([]);
+        },
+        /**
+         * #action
+         */
+        setError(e) {
+            self.error = e;
+        },
+        /**
+         * #action
+         */
+        setAlignment(r) {
+            self.alignment = r;
+        },
+        /**
+         * #action
+         */
+        setShowHighlight(arg) {
+            self.showHighlight = arg;
+        },
+        /**
+         * #action
+         */
+        setZoomToBaseLevel(arg) {
+            self.zoomToBaseLevel = arg;
+        },
+    }))
+        .views(self => ({
+        /**
+         * #getter
+         */
+        get structureSeqToTranscriptSeqPosition() {
+            return self.alignment
+                ? structureSeqVsTranscriptSeqMap(self.alignment)
+                    .structureSeqToTranscriptSeqPosition
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get transcriptSeqToStructureSeqPosition() {
+            return self.alignment
+                ? structureSeqVsTranscriptSeqMap(self.alignment)
+                    .transcriptSeqToStructureSeqPosition
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get structurePositionToAlignmentMap() {
+            return self.alignment
+                ? structurePositionToAlignmentMap(self.alignment)
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get transcriptPositionToAlignmentMap() {
+            return self.alignment
+                ? transcriptPositionToAlignmentMap(self.alignment)
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get alignmentToTranscriptPosition() {
+            return this.transcriptPositionToAlignmentMap
+                ? invertMap(this.transcriptPositionToAlignmentMap)
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get alignmentToStructurePosition() {
+            return this.structurePositionToAlignmentMap
+                ? invertMap(this.structurePositionToAlignmentMap)
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get clickString() {
+            const r = self.clickPosition;
+            return r ? toStr(r) : '';
+        },
+        /**
+         * #getter
+         */
+        get hoverString() {
+            const r = self.hoverPosition;
+            return r ? toStr(r) : '';
+        },
+        /**
+         * #getter
+         */
+        get genomeToTranscriptSeqMapping() {
+            return self.feature
+                ? genomeToTranscriptSeqMapping(new SimpleFeature(self.feature))
+                : undefined;
+        },
+        /**
+         * #getter
+         */
+        get structureSeqHoverPos() {
+            return self.hoverPosition?.structureSeqPos;
+        },
+    }))
+        .actions(self => ({
+        afterAttach() {
+            // pairwise align transcript sequence to structure sequence
+            addDisposer(self, autorun(async () => {
+                try {
+                    const { seq1, seq2 } = self;
+                    if (!!self.alignment || !seq1 || !seq2) {
+                        return;
+                    }
+                    const alignment = await launchPairwiseAlignment({
+                        seq1,
+                        seq2,
+                        algorithm: 'emboss_needle',
+                        onProgress: arg => self.setProgress(arg),
+                    });
+                    self.setAlignment(alignment.alignment);
+                }
+                catch (e) {
+                    console.error(e);
+                    self.setError(e);
+                }
+            }));
+            // convert hover over the genome to structure position
+            addDisposer(self, autorun(() => {
+                const { hovered } = getSession(self);
+                const { transcriptSeqToStructureSeqPosition, genomeToTranscriptSeqMapping, connectedView, } = self;
+                if (!connectedView?.initialized ||
+                    !genomeToTranscriptSeqMapping ||
+                    !checkHovered(hovered)) {
+                    return undefined;
+                }
+                const pos = genomeToTranscriptSeqMapping.g2p[hovered.hoverPosition.coord];
+                const c0 = pos
+                    ? transcriptSeqToStructureSeqPosition?.[pos]
+                    : undefined;
+                if (c0 !== undefined) {
+                    self.setHoveredPosition({
+                        structureSeqPos: c0,
+                    });
+                }
+            }));
+        },
+    }));
+}
+export default stateModelFactory;
+//# sourceMappingURL=model.js.map

package/dist/ProteinView/model.js.map

@@ -0,0 +1 @@
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package/dist/ProteinView/proteinAbbreviationMapping.d.ts

@@ -0,0 +1,7 @@
+export declare const proteinAbbreviationMapping: {
+    [k: string]: {
+        name: string;
+        abbreviation: string;
+        singleLetterCode: string;
+    };
+};

package/dist/ProteinView/proteinAbbreviationMapping.js

@@ -0,0 +1,23 @@
+export const proteinAbbreviationMapping = Object.fromEntries([
+    { name: 'alanine', abbreviation: 'Ala', singleLetterCode: 'A' },
+    { name: 'arginine', abbreviation: 'Arg', singleLetterCode: 'R' },
+    { name: 'asparagine', abbreviation: 'Asn', singleLetterCode: 'N' },
+    { name: 'aspartic acid', abbreviation: 'Asp', singleLetterCode: 'D' },
+    { name: 'cysteine', abbreviation: 'Cys', singleLetterCode: 'C' },
+    { name: 'glutamic acid', abbreviation: 'Glu', singleLetterCode: 'E' },
+    { name: 'glutamine', abbreviation: 'Gln', singleLetterCode: 'Q' },
+    { name: 'glycine', abbreviation: 'Gly', singleLetterCode: 'G' },
+    { name: 'histidine', abbreviation: 'His', singleLetterCode: 'H' },
+    { name: 'isoleucine', abbreviation: 'Ile', singleLetterCode: 'I' },
+    { name: 'leucine', abbreviation: 'Leu', singleLetterCode: 'L' },
+    { name: 'lysine', abbreviation: 'Lys', singleLetterCode: 'K' },
+    { name: 'methionine', abbreviation: 'Met', singleLetterCode: 'M' },
+    { name: 'phenylalanine', abbreviation: 'Phe', singleLetterCode: 'F' },
+    { name: 'proline', abbreviation: 'Pro', singleLetterCode: 'P' },
+    { name: 'serine', abbreviation: 'Ser', singleLetterCode: 'S' },
+    { name: 'threonine', abbreviation: 'Thr', singleLetterCode: 'T' },
+    { name: 'tryptophan', abbreviation: 'Trp', singleLetterCode: 'W' },
+    { name: 'tyrosine', abbreviation: 'Tyr', singleLetterCode: 'Y' },
+    { name: 'valine', abbreviation: 'Val', singleLetterCode: 'V' },
+].map(r => [r.abbreviation.toUpperCase(), r]));
+//# sourceMappingURL=proteinAbbreviationMapping.js.map

package/dist/ProteinView/proteinAbbreviationMapping.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"proteinAbbreviationMapping.js","sourceRoot":"","sources":["../../src/ProteinView/proteinAbbreviationMapping.ts"],"names":[],"mappings":"AAAA,MAAM,CAAC,MAAM,0BAA0B,GAAG,MAAM,CAAC,WAAW,CAC1D;IACE,EAAE,IAAI,EAAE,SAAS,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC/D,EAAE,IAAI,EAAE,UAAU,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAChE,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAClE,EAAE,IAAI,EAAE,eAAe,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACrE,EAAE,IAAI,EAAE,UAAU,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAChE,EAAE,IAAI,EAAE,eAAe,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACrE,EAAE,IAAI,EAAE,WAAW,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACjE,EAAE,IAAI,EAAE,SAAS,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC/D,EAAE,IAAI,EAAE,WAAW,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACjE,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAClE,EAAE,IAAI,EAAE,SAAS,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC/D,EAAE,IAAI,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC9D,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAClE,EAAE,IAAI,EAAE,eAAe,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACrE,EAAE,IAAI,EAAE,SAAS,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC/D,EAAE,IAAI,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAC9D,EAAE,IAAI,EAAE,WAAW,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IACjE,EAAE,IAAI,EAAE,YAAY,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAClE,EAAE,IAAI,EAAE,UAAU,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;IAChE,EAAE,IAAI,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,EAAE,gBAAgB,EAAE,GAAG,EAAE;CAC/D,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,WAAW,EAAE,EAAE,CAAC,CAAC,CAAC,CAC9C,CAAA"}

package/dist/ProteinView/proteinToGenomeMapping.d.ts

@@ -0,0 +1,13 @@
+import { JBrowsePluginProteinViewModel } from './model';
+export declare function proteinToGenomeMapping({ model, structureSeqPos, }: {
+    structureSeqPos: number;
+    model: JBrowsePluginProteinViewModel;
+}): number[] | undefined;
+export declare function clickProteinToGenome({ model, structureSeqPos, }: {
+    structureSeqPos: number;
+    model: JBrowsePluginProteinViewModel;
+}): Promise<undefined>;
+export declare function hoverProteinToGenome({ model, structureSeqPos, }: {
+    structureSeqPos: number;
+    model: JBrowsePluginProteinViewModel;
+}): void;

package/dist/ProteinView/proteinToGenomeMapping.js

@@ -0,0 +1,69 @@
+import { getSession } from '@jbrowse/core/util';
+export function proteinToGenomeMapping({ model, structureSeqPos, }) {
+    const { genomeToTranscriptSeqMapping, alignment, structureSeqToTranscriptSeqPosition, } = model;
+    if (!genomeToTranscriptSeqMapping || !alignment) {
+        return undefined;
+    }
+    const { p2g, strand } = genomeToTranscriptSeqMapping;
+    const r1 = structureSeqToTranscriptSeqPosition?.[structureSeqPos];
+    if (r1 === undefined) {
+        return undefined;
+    }
+    const s0 = p2g[r1];
+    if (s0 === undefined) {
+        return undefined;
+    }
+    const start = s0;
+    const end = start + 3 * strand;
+    return [Math.min(start, end), Math.max(start, end)];
+}
+export async function clickProteinToGenome({ model, structureSeqPos, }) {
+    const session = getSession(model);
+    const result = proteinToGenomeMapping({ structureSeqPos, model });
+    const { genomeToTranscriptSeqMapping, zoomToBaseLevel } = model;
+    const { assemblyManager } = session;
+    if (!genomeToTranscriptSeqMapping || result === undefined) {
+        return undefined;
+    }
+    const [s1, s2] = result;
+    const lgv = session.views[0];
+    const { strand, refName } = genomeToTranscriptSeqMapping;
+    model.setClickGenomeHighlights([
+        {
+            assemblyName: 'hg38',
+            refName,
+            start: s1,
+            end: s2,
+        },
+    ]);
+    if (!zoomToBaseLevel) {
+        const assembly = assemblyManager.get(lgv.assemblyNames[0]);
+        const r = assembly?.getCanonicalRefName(refName) ?? refName;
+        lgv.centerAt(s1, r);
+    }
+    else {
+        await lgv.navToLocString(`${refName}:${s1}-${s2}${strand === -1 ? '[rev]' : ''}`);
+    }
+}
+export function hoverProteinToGenome({ model, structureSeqPos, }) {
+    const session = getSession(model);
+    const result = proteinToGenomeMapping({ structureSeqPos, model });
+    const { genomeToTranscriptSeqMapping } = model;
+    if (!genomeToTranscriptSeqMapping || !result) {
+        return;
+    }
+    if (!result) {
+        session.notify('Genome position not found');
+    }
+    const [s1, s2] = result;
+    const { refName } = genomeToTranscriptSeqMapping;
+    model.setHoverGenomeHighlights([
+        {
+            assemblyName: 'hg38',
+            refName,
+            start: s1,
+            end: s2,
+        },
+    ]);
+}
+//# sourceMappingURL=proteinToGenomeMapping.js.map

package/dist/ProteinView/proteinToGenomeMapping.js.map

@@ -0,0 +1 @@
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package/dist/ProteinView/selectResidue.d.ts

@@ -0,0 +1,7 @@
+import { PluginContext } from 'molstar/lib/mol-plugin/context';
+import { Structure } from 'molstar/lib/mol-model/structure';
+export default function selectResidue({ structure, selectedResidue, plugin, }: {
+    structure: Structure;
+    selectedResidue: number;
+    plugin: PluginContext;
+}): void;

package/dist/ProteinView/selectResidue.js

@@ -0,0 +1,10 @@
+import { StructureSelection } from 'molstar/lib/mol-model/structure';
+import { getMolstarStructureSelection } from './util';
+export default function selectResidue({ structure, selectedResidue, plugin, }) {
+    const sel = getMolstarStructureSelection({ structure, selectedResidue });
+    const loci = StructureSelection.toLociWithSourceUnits(sel);
+    plugin?.managers.interactivity.lociSelects.select({
+        loci,
+    });
+}
+//# sourceMappingURL=selectResidue.js.map

package/dist/ProteinView/selectResidue.js.map

@@ -0,0 +1 @@
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package/dist/ProteinView/useProteinView.d.ts

@@ -0,0 +1,11 @@
+import { PluginContext } from 'molstar/lib/mol-plugin/context';
+export default function useProteinView({ url, data, showControls, }: {
+    url?: string;
+    data?: string;
+    showControls: boolean;
+}): {
+    parentRef: import("react").RefObject<HTMLDivElement>;
+    error: unknown;
+    plugin: PluginContext | undefined;
+    seq: string;
+};

package/dist/ProteinView/useProteinView.js

@@ -0,0 +1,57 @@
+import { useState, useEffect, useRef } from 'react';
+import { createPluginUI } from 'molstar/lib/mol-plugin-ui';
+import { renderReact18 } from 'molstar/lib/mol-plugin-ui/react18';
+import { DefaultPluginUISpec } from 'molstar/lib/mol-plugin-ui/spec';
+// locals
+import { loadStructureFromURL } from './loadStructureFromURL';
+import { loadStructureFromData } from './loadStructureFromData';
+export default function useProteinView({ url, data, showControls, }) {
+    const parentRef = useRef(null);
+    const [plugin, setPlugin] = useState();
+    const [error, setError] = useState();
+    const [seq, setSeq] = useState('');
+    useEffect(() => {
+        let p;
+        (async () => {
+            try {
+                if (!parentRef.current) {
+                    return;
+                }
+                const d = document.createElement('div');
+                parentRef.current.append(d);
+                p = await createPluginUI({
+                    target: d,
+                    render: renderReact18,
+                    spec: {
+                        ...DefaultPluginUISpec(),
+                        layout: {
+                            initial: {
+                                controlsDisplay: 'reactive',
+                                showControls,
+                            },
+                        },
+                    },
+                });
+                await p.initialized;
+                setPlugin(p);
+                if (url) {
+                    const { seq } = await loadStructureFromURL({ url, plugin: p });
+                    setSeq(seq);
+                }
+                else if (data) {
+                    const { seq } = await loadStructureFromData({ data, plugin: p });
+                    setSeq(seq);
+                }
+            }
+            catch (e) {
+                console.error(e);
+                setError(e);
+            }
+        })();
+        return () => {
+            p?.unmount();
+        };
+    }, [url, data, showControls]);
+    return { parentRef, error, plugin, seq };
+}
+//# sourceMappingURL=useProteinView.js.map

package/dist/ProteinView/useProteinView.js.map

@@ -0,0 +1 @@
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package/dist/ProteinView/useProteinViewClickBehavior.d.ts

@@ -0,0 +1,8 @@
+import { PluginContext } from 'molstar/lib/mol-plugin/context';
+import { JBrowsePluginProteinViewModel } from './model';
+export default function useProteinViewClickActionBehavior({ plugin, model, }: {
+    plugin?: PluginContext;
+    model: JBrowsePluginProteinViewModel;
+}): {
+    error: unknown;
+};

package/dist/ProteinView/useProteinViewClickBehavior.js

@@ -0,0 +1,34 @@
+import { useEffect, useState } from 'react';
+import { getSession } from '@jbrowse/core/util';
+import { clickProteinToGenome } from './proteinToGenomeMapping';
+import { StructureElement, StructureProperties as Props, } from 'molstar/lib/mol-model/structure';
+export default function useProteinViewClickActionBehavior({ plugin, model, }) {
+    const [error, setError] = useState();
+    const session = getSession(model);
+    useEffect(() => {
+        if (!plugin) {
+            return;
+        }
+        plugin.behaviors.interaction.click.subscribe(event => {
+            if (StructureElement.Loci.is(event.current.loci)) {
+                const loc = StructureElement.Loci.getFirstLocation(event.current.loci);
+                if (loc) {
+                    const pos = Props.residue.auth_seq_id(loc);
+                    const code = Props.atom.label_comp_id(loc);
+                    const chain = Props.chain.auth_asym_id(loc);
+                    model.setHoveredPosition({
+                        structureSeqPos: pos - 1,
+                        code,
+                        chain,
+                    });
+                    clickProteinToGenome({ model, structureSeqPos: pos - 1 }).catch(e => {
+                        console.error(e);
+                        setError(e);
+                    });
+                }
+            }
+        });
+    }, [plugin, session, model]);
+    return { error };
+}
+//# sourceMappingURL=useProteinViewClickBehavior.js.map

package/dist/ProteinView/useProteinViewClickBehavior.js.map

@@ -0,0 +1 @@
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package/dist/ProteinView/useProteinViewHoverBehavior.d.ts

@@ -0,0 +1,6 @@
+import { PluginContext } from 'molstar/lib/mol-plugin/context';
+import { JBrowsePluginProteinViewModel } from './model';
+export default function useProteinViewClickActionBehavior({ plugin, model, }: {
+    plugin?: PluginContext;
+    model: JBrowsePluginProteinViewModel;
+}): void;

package/dist/ProteinView/useProteinViewHoverBehavior.js

@@ -0,0 +1,31 @@
+import { useEffect } from 'react';
+import { getSession } from '@jbrowse/core/util';
+import { StructureElement, StructureProperties as Props, } from 'molstar/lib/mol-model/structure';
+import { hoverProteinToGenome } from './proteinToGenomeMapping';
+export default function useProteinViewClickActionBehavior({ plugin, model, }) {
+    const session = getSession(model);
+    useEffect(() => {
+        if (!plugin) {
+            return;
+        }
+        plugin.behaviors.interaction.hover.subscribe(event => {
+            if (StructureElement.Loci.is(event.current.loci)) {
+                const loc = StructureElement.Loci.getFirstLocation(event.current.loci);
+                if (loc) {
+                    // example code for this label
+                    // https://github.com/molstar/molstar/blob/60550cfea1f62a50a764d5714307d6d1049be71d/src/mol-theme/label.ts#L255-L264
+                    const structureSeqPos = Props.residue.auth_seq_id(loc);
+                    const code = Props.atom.label_comp_id(loc);
+                    const chain = Props.chain.auth_asym_id(loc);
+                    model.setHoveredPosition({
+                        structureSeqPos: structureSeqPos - 1,
+                        code,
+                        chain,
+                    });
+                    hoverProteinToGenome({ model, structureSeqPos: structureSeqPos - 1 });
+                }
+            }
+        });
+    }, [plugin, session, model]);
+}
+//# sourceMappingURL=useProteinViewHoverBehavior.js.map

package/dist/ProteinView/useProteinViewHoverBehavior.js.map

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