jbrowse-plugin-protein3d 0.0.2

package/dist/LaunchProteinView/components/PreLoadedStructureMapping.js

@@ -0,0 +1,72 @@
+import React, { useEffect, useMemo, useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, DialogActions, DialogContent, Link, MenuItem, TextField, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
+import { getSession } from '@jbrowse/core/util';
+// locals
+import { createMapFromData, getDisplayName, getTranscriptFeatures, stripTrailingVersion, } from '../util';
+import { genomeToTranscriptMapping } from '../../genomeToTranscriptMapping';
+const useStyles = makeStyles()(theme => ({
+    section: {
+        marginTop: theme.spacing(6),
+    },
+    dialogContent: {
+        width: '80em',
+    },
+}));
+function foundF(f, map) {
+    return (map.get(stripTrailingVersion(f?.get('name')) ?? '') ??
+        map.get(stripTrailingVersion(f?.get('id')) ?? ''));
+}
+const AutoForm = observer(function AutoForm({ model, feature, handleClose, }) {
+    const { classes } = useStyles();
+    const session = getSession(model);
+    // @ts-expect-error
+    const { proteinModel } = session;
+    const { data, error } = proteinModel;
+    // check if we are looking at a 'two-level' or 'three-level' feature by
+    // finding exon/CDS subfeatures. we want to select from transcript names
+    const options = getTranscriptFeatures(feature);
+    const transcriptIdToStructureMap = useMemo(() => createMapFromData(data), [data]);
+    const hasDataForFeatures = useMemo(() => options.filter(f => foundF(f, transcriptIdToStructureMap)), [transcriptIdToStructureMap, options]);
+    const [userSelection, setUserSelection] = useState('');
+    const userSelectionFeat = options.find(f => f.id() === userSelection);
+    const foundStructureId = foundF(userSelectionFeat, transcriptIdToStructureMap);
+    useEffect(() => {
+        setUserSelection(hasDataForFeatures[0]?.id());
+    }, [hasDataForFeatures]);
+    const mapping = foundStructureId && userSelectionFeat
+        ? genomeToTranscriptMapping(userSelectionFeat)
+        : [];
+    const url = foundStructureId
+        ? `https://files.rcsb.org/view/${foundStructureId}.cif`
+        : undefined;
+    return (React.createElement(React.Fragment, null,
+        React.createElement(DialogContent, { className: classes.dialogContent },
+            React.createElement("div", { className: classes.section }, error ? (React.createElement(ErrorMessage, { error: error })) : data ? (React.createElement("div", null,
+                React.createElement(Intro, null),
+                hasDataForFeatures.length === 0 ? (React.createElement(Typography, { color: "error" }, "No data for feature")) : (React.createElement(React.Fragment, null,
+                    React.createElement("div", { className: classes.section },
+                        React.createElement(TextField, { value: userSelection, onChange: event => setUserSelection(event.target.value), label: "Choose isoform", select: true }, hasDataForFeatures.map(val => (React.createElement(MenuItem, { value: val.id(), key: val.id() },
+                            getDisplayName(val),
+                            " (has data)"))))))))) : (React.createElement(LoadingEllipses, null)))),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "secondary", onClick: handleClose }, "Cancel"),
+            React.createElement(Button, { variant: "contained", color: "primary", onClick: () => {
+                    session.addView('ProteinView', {
+                        type: 'ProteinView',
+                        url,
+                        mapping,
+                    });
+                    handleClose();
+                } }, "Submit"))));
+});
+function Intro() {
+    return (React.createElement("div", null,
+        "Find structure associated with gene ID:",
+        ' ',
+        React.createElement(Link, { href: "http://useast.ensembl.org/biomart/martview/4b20effd49654183333b81e98757976f?VIRTUALSCHEMANAME=default&ATTRIBUTES=hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id|hsapiens_gene_ensembl.default.feature_page.ensembl_gene_id_version|hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id|hsapiens_gene_ensembl.default.feature_page.ensembl_transcript_id_version|hsapiens_gene_ensembl.default.feature_page.pdb|hsapiens_gene_ensembl.default.feature_page.refseq_mrna|hsapiens_gene_ensembl.default.feature_page.refseq_mrna_predicted&FILTERS=&VISIBLEPANEL=attributepanel" }, "Human mappings generated from BioMart (April 13, 2023)")));
+}
+export default AutoForm;
+//# sourceMappingURL=PreLoadedStructureMapping.js.map

package/dist/LaunchProteinView/components/PreLoadedStructureMapping.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/components/TabPanel.d.ts

@@ -0,0 +1,6 @@
+import React from 'react';
+export default function TabPanel({ children, value, index, ...other }: {
+    children?: React.ReactNode;
+    index: number;
+    value: number;
+}): React.JSX.Element;

package/dist/LaunchProteinView/components/TabPanel.js

@@ -0,0 +1,6 @@
+import React from 'react';
+// this is from MUI example
+export default function TabPanel({ children, value, index, ...other }) {
+    return (React.createElement("div", { role: "tabpanel", hidden: value !== index, ...other }, value === index && React.createElement("div", null, children)));
+}
+//# sourceMappingURL=TabPanel.js.map

package/dist/LaunchProteinView/components/TabPanel.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/components/TranscriptSelector.d.ts

@@ -0,0 +1,9 @@
+import React from 'react';
+import { Feature } from '@jbrowse/core/util';
+export default function TranscriptSelector({ val, setVal, options, feature, seqs, }: {
+    options: Feature[];
+    feature: Feature;
+    val: string;
+    setVal: (str: string) => void;
+    seqs: Record<string, string>;
+}): React.JSX.Element;

package/dist/LaunchProteinView/components/TranscriptSelector.js

@@ -0,0 +1,28 @@
+import React from 'react';
+import { MenuItem, TextField } from '@mui/material';
+// locals
+import { getGeneDisplayName, getTranscriptDisplayName } from '../util';
+function TextField2({ children, ...rest }) {
+    return (React.createElement("div", null,
+        React.createElement(TextField, { ...rest }, children)));
+}
+export default function TranscriptSelector({ val, setVal, options, feature, seqs, }) {
+    return (React.createElement(TextField2, { value: val, onChange: event => setVal(event.target.value), label: "Choose transcript isoform", select: true },
+        options
+            .filter(f => !!seqs[f.id()])
+            .map(f => (React.createElement(MenuItem, { value: f.id(), key: f.id() },
+            getGeneDisplayName(feature),
+            " - ",
+            getTranscriptDisplayName(f),
+            " (",
+            seqs[f.id()].length,
+            "aa)"))),
+        options
+            .filter(f => !seqs[f.id()])
+            .map(f => (React.createElement(MenuItem, { value: f.id(), key: f.id(), disabled: true },
+            getGeneDisplayName(feature),
+            " - ",
+            getTranscriptDisplayName(f),
+            " (no data)")))));
+}
+//# sourceMappingURL=TranscriptSelector.js.map

package/dist/LaunchProteinView/components/TranscriptSelector.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/components/UserProvidedStructure.d.ts

@@ -0,0 +1,8 @@
+import React from 'react';
+import { AbstractTrackModel, Feature } from '@jbrowse/core/util';
+declare const UserProvidedStructure: ({ feature, model, handleClose, }: {
+    feature: Feature;
+    model: AbstractTrackModel;
+    handleClose: () => void;
+}) => React.JSX.Element;
+export default UserProvidedStructure;

package/dist/LaunchProteinView/components/UserProvidedStructure.js

@@ -0,0 +1,118 @@
+import React, { useEffect, useState } from 'react';
+import { observer } from 'mobx-react';
+import { Button, DialogActions, Radio, RadioGroup, DialogContent, TextField, FormControlLabel, FormControl, Link, Typography, } from '@mui/material';
+import { makeStyles } from 'tss-react/mui';
+import { getContainingView, getSession, } from '@jbrowse/core/util';
+import { ErrorMessage, LoadingEllipses } from '@jbrowse/core/ui';
+// locals
+import { getGeneDisplayName, getId, getTranscriptDisplayName, getTranscriptFeatures, } from '../util';
+import TranscriptSelector from './TranscriptSelector';
+// hooks
+import useAllSequences from '../useProteinSequences';
+const useStyles = makeStyles()(theme => ({
+    dialogContent: {
+        marginTop: theme.spacing(6),
+        width: '80em',
+    },
+    textAreaFont: {
+        fontFamily: 'Courier New',
+    },
+}));
+function HelpText() {
+    return (React.createElement("div", { style: { marginBottom: 20 } },
+        "Manually supply a protein structure (PDB, mmCIF, etc) for a given transcript. You can open the file from the result of running, for example,",
+        ' ',
+        React.createElement(Link, { target: "_blank", href: "https://github.com/sokrypton/ColabFold" }, "ColabFold"),
+        ". This plugin will align the protein sequence calculated from the genome to the protein sequence embedded in the structure file which allows for slight differences in these two representations."));
+}
+const UserProvidedStructure = observer(function ({ feature, model, handleClose, }) {
+    const { classes } = useStyles();
+    const session = getSession(model);
+    const [file, setFile] = useState();
+    const [choice, setChoice] = useState('file');
+    const [error2, setError] = useState();
+    const [structureURL, setStructureURL] = useState('');
+    const [selection, setSelection] = useState();
+    // check if we are looking at a 'two-level' or 'three-level' feature by
+    // finding exon/CDS subfeatures. we want to select from transcript names
+    const options = getTranscriptFeatures(feature);
+    const view = getContainingView(model);
+    const selectedTranscript = options.find(val => getId(val) === selection);
+    const { seqs, error } = useAllSequences({ feature, view });
+    const protein = seqs?.[selection ?? ''];
+    useEffect(() => {
+        if (selection === undefined && seqs !== undefined) {
+            setSelection(options.find(f => !!seqs[f.id()])?.id());
+        }
+    }, [options, selection, seqs]);
+    const e = error || error2;
+    return (React.createElement(React.Fragment, null,
+        React.createElement(DialogContent, { className: classes.dialogContent },
+            e ? React.createElement(ErrorMessage, { error: e }) : null,
+            React.createElement(HelpText, null),
+            seqs ? (React.createElement(React.Fragment, null,
+                React.createElement(TranscriptSelector, { val: selection ?? '', setVal: setSelection, options: options, feature: feature, seqs: seqs }),
+                selectedTranscript ? (React.createElement(TextField, { variant: "outlined", multiline: true, minRows: 5, maxRows: 10, fullWidth: true, value: `>${selectedTranscript.get('name') || selectedTranscript.get('id')}\n${protein}`, InputProps: {
+                        readOnly: true,
+                        classes: {
+                            input: classes.textAreaFont,
+                        },
+                    } })) : null)) : (React.createElement("div", { style: { margin: 20 } },
+                React.createElement(LoadingEllipses, { title: "Loading protein sequences", variant: "h6" }))),
+            React.createElement("div", { style: { display: 'flex', margin: 30 } },
+                React.createElement(FormControl, { component: "fieldset" },
+                    React.createElement(RadioGroup, { value: choice, onChange: event => setChoice(event.target.value) },
+                        React.createElement(FormControlLabel, { value: "url", control: React.createElement(Radio, null), label: "URL" }),
+                        React.createElement(FormControlLabel, { value: "file", control: React.createElement(Radio, null), label: "File" }))),
+                choice === 'url' ? (React.createElement("div", null,
+                    React.createElement(Typography, null, "Open a PDB/mmCIF/etc. file from remote URL"),
+                    React.createElement(TextField, { label: "URL", value: structureURL, onChange: event => setStructureURL(event.target.value) }))) : null,
+                choice === 'file' ? (React.createElement("div", { style: { paddingTop: 20 } },
+                    React.createElement(Typography, null, "Open a PDB/mmCIF/etc. file from your local drive"),
+                    React.createElement(Button, { variant: "outlined", component: "label" },
+                        "Choose File",
+                        React.createElement("input", { type: "file", hidden: true, onChange: ({ target }) => {
+                                const file = target?.files?.[0];
+                                if (file) {
+                                    setFile(file);
+                                }
+                            } })))) : null)),
+        React.createElement(DialogActions, null,
+            React.createElement(Button, { variant: "contained", color: "secondary", onClick: () => handleClose() }, "Cancel"),
+            React.createElement(Button, { variant: "contained", color: "primary", disabled: !(structureURL || file) || !protein || !selectedTranscript, onClick: () => {
+                    // eslint-disable-next-line @typescript-eslint/no-floating-promises
+                    ;
+                    (async () => {
+                        try {
+                            if (file) {
+                                const data = await file.text();
+                                session.addView('ProteinView', {
+                                    type: 'ProteinView',
+                                    data,
+                                    seq2: protein,
+                                    feature: selectedTranscript?.toJSON(),
+                                    connectedViewId: view.id,
+                                    displayName: `Protein view ${getGeneDisplayName(feature)} - ${getTranscriptDisplayName(selectedTranscript)}`,
+                                });
+                            }
+                            else if (structureURL) {
+                                session.addView('ProteinView', {
+                                    type: 'ProteinView',
+                                    url: structureURL,
+                                    seq2: protein,
+                                    feature: selectedTranscript?.toJSON(),
+                                    connectedViewId: view.id,
+                                    displayName: `Protein view ${getGeneDisplayName(feature)} - ${getTranscriptDisplayName(selectedTranscript)}`,
+                                });
+                            }
+                            handleClose();
+                        }
+                        catch (e) {
+                            console.error(e);
+                            setError(e);
+                        }
+                    })();
+                } }, "Submit"))));
+});
+export default UserProvidedStructure;
+//# sourceMappingURL=UserProvidedStructure.js.map

package/dist/LaunchProteinView/components/UserProvidedStructure.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.d.ts

@@ -0,0 +1,7 @@
+export declare function useCheckAlphaFoldDBExistence({ foundStructureId, }: {
+    foundStructureId?: string;
+}): {
+    error: unknown;
+    loading: boolean;
+    success: boolean;
+};

package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.js

@@ -0,0 +1,26 @@
+import { useEffect, useState } from 'react';
+export function useCheckAlphaFoldDBExistence({ foundStructureId, }) {
+    const [error, setError] = useState();
+    const [loading, setLoading] = useState(false);
+    const [success, setSuccess] = useState(false);
+    useEffect(() => {
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
+        (async () => {
+            try {
+                if (foundStructureId) {
+                    setLoading(true);
+                    await fetch(`https://alphafold.ebi.ac.uk/files/AF-${foundStructureId}-F1-model_v4.cif`, { method: 'HEAD' });
+                    setLoading(false);
+                    setSuccess(true);
+                }
+            }
+            catch (e) {
+                console.error(e);
+                setError(e);
+            }
+        })();
+    }, [foundStructureId]);
+    return { error, loading, success };
+}
+//# sourceMappingURL=useCheckAlphaFoldDBExistence.js.map

package/dist/LaunchProteinView/components/useCheckAlphaFoldDBExistence.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/index.d.ts

@@ -0,0 +1,2 @@
+import PluginManager from '@jbrowse/core/PluginManager';
+export default function LaunchProteinViewF(pluginManager: PluginManager): void;

package/dist/LaunchProteinView/index.js

@@ -0,0 +1,45 @@
+import { getSession, getContainingTrack } from '@jbrowse/core/util';
+// icons
+import AddIcon from '@mui/icons-material/Add';
+// locals
+import LaunchProteinViewDialog from './components/LaunchProteinViewDialog';
+function isDisplay(elt) {
+    return elt.name === 'LinearBasicDisplay';
+}
+function extendStateModel(stateModel) {
+    return stateModel.views(self => {
+        const superContextMenuItems = self.contextMenuItems;
+        return {
+            contextMenuItems() {
+                const feature = self.contextMenuFeature;
+                const track = getContainingTrack(self);
+                return [
+                    ...superContextMenuItems(),
+                    ...(feature
+                        ? [
+                            {
+                                label: 'Launch protein view',
+                                icon: AddIcon,
+                                onClick: () => {
+                                    getSession(track).queueDialog(handleClose => [
+                                        LaunchProteinViewDialog,
+                                        { model: track, handleClose, feature },
+                                    ]);
+                                },
+                            },
+                        ]
+                        : []),
+                ];
+            },
+        };
+    });
+}
+export default function LaunchProteinViewF(pluginManager) {
+    pluginManager.addToExtensionPoint('Core-extendPluggableElement', (elt) => {
+        if (isDisplay(elt)) {
+            elt.stateModel = extendStateModel(elt.stateModel);
+        }
+        return elt;
+    });
+}
+//# sourceMappingURL=index.js.map

package/dist/LaunchProteinView/index.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/useMyGeneInfo.d.ts

@@ -0,0 +1,7 @@
+export default function useMyGeneInfo({ id }: {
+    id: string;
+}): {
+    loading: boolean;
+    result: string | undefined;
+    error: unknown;
+};

package/dist/LaunchProteinView/useMyGeneInfo.js

@@ -0,0 +1,29 @@
+import { useEffect, useState } from 'react';
+import { jsonfetch } from '../fetchUtils';
+import { stripTrailingVersion } from './util';
+export default function useMyGeneInfo({ id }) {
+    const [result, setResult] = useState();
+    const [error, setError] = useState();
+    const [loading, setLoading] = useState(false);
+    useEffect(() => {
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
+        (async () => {
+            try {
+                if (!id) {
+                    return;
+                }
+                setLoading(true);
+                const res = await jsonfetch(`https://mygene.info/v3/query?q=${stripTrailingVersion(id)}&fields=uniprot,symbol`);
+                setLoading(false);
+                setResult(res);
+            }
+            catch (e) {
+                console.error(e);
+                setError(e);
+            }
+        })();
+    }, [id]);
+    return { loading, result: result?.hits[0]?.uniprot['Swiss-Prot'], error };
+}
+//# sourceMappingURL=useMyGeneInfo.js.map

package/dist/LaunchProteinView/useMyGeneInfo.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/useProteinSequences.d.ts

@@ -0,0 +1,10 @@
+import { Feature } from '@jbrowse/core/util';
+export default function useAllSequences({ feature, view, }: {
+    feature: Feature;
+    view: {
+        assemblyNames?: string[];
+    } | undefined;
+}): {
+    seqs: Record<string, string> | undefined;
+    error: unknown;
+};

package/dist/LaunchProteinView/useProteinSequences.js

@@ -0,0 +1,30 @@
+import { useEffect, useState } from 'react';
+// locals
+import { getTranscriptFeatures } from './util';
+import { fetchProteinSeq } from './calculateProteinSequence';
+export default function useAllSequences({ feature, view, }) {
+    const [error, setError] = useState();
+    const [seqs, setSeqs] = useState();
+    useEffect(() => {
+        // eslint-disable-next-line @typescript-eslint/no-floating-promises
+        ;
+        (async () => {
+            try {
+                const ret = [];
+                for (const f of getTranscriptFeatures(feature)) {
+                    const seq = await fetchProteinSeq({ view, feature: f });
+                    if (seq) {
+                        ret.push([f.id(), seq]);
+                    }
+                }
+                setSeqs(Object.fromEntries(ret));
+            }
+            catch (e) {
+                console.error(e);
+                setError(e);
+            }
+        })();
+    }, [feature, view]);
+    return { seqs, error };
+}
+//# sourceMappingURL=useProteinSequences.js.map

package/dist/LaunchProteinView/useProteinSequences.js.map

@@ -0,0 +1 @@
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package/dist/LaunchProteinView/util.d.ts

@@ -0,0 +1,18 @@
+import { Feature } from '@jbrowse/core/util';
+export interface Row {
+    gene_id: string;
+    gene_id_version: string;
+    transcript_id_version: string;
+    transcript_id: string;
+    pdb_id: string;
+    refseq_mrna_predicted_id: string;
+    refseq_mrna_id: string;
+}
+export declare function getTranscriptFeatures(feature: Feature): Feature[];
+export declare function stripTrailingVersion(s?: string): string | undefined;
+export declare function z(n: number): string;
+export declare function createMapFromData(data?: Row[]): Map<string, string>;
+export declare function getDisplayName(f: Feature): string;
+export declare function getId(val?: Feature): string;
+export declare function getTranscriptDisplayName(val?: Feature): string;
+export declare function getGeneDisplayName(val?: Feature): string;

package/dist/LaunchProteinView/util.js

@@ -0,0 +1,54 @@
+export function getTranscriptFeatures(feature) {
+    // check if we are looking at a 'two-level' or 'three-level' feature by
+    // finding exon/CDS subfeatures. we want to select from transcript names
+    const subfeatures = feature.get('subfeatures') ?? [];
+    return subfeatures.some(f => f.get('type') === 'CDS' || f.get('type') === 'exon')
+        ? [feature]
+        : subfeatures;
+}
+export function stripTrailingVersion(s) {
+    return s?.replace(/\.[^/.]+$/, '');
+}
+export function z(n) {
+    return n.toLocaleString('en-US');
+}
+export function createMapFromData(data) {
+    const map = new Map();
+    if (data) {
+        for (const d of data) {
+            const { pdb_id, transcript_id, refseq_mrna_id, transcript_id_version } = d;
+            if (!pdb_id) {
+                continue;
+            }
+            if (transcript_id) {
+                map.set(transcript_id, pdb_id);
+            }
+            if (refseq_mrna_id) {
+                map.set(refseq_mrna_id, pdb_id);
+            }
+            if (transcript_id_version) {
+                map.set(transcript_id_version, pdb_id);
+            }
+        }
+    }
+    return map;
+}
+export function getDisplayName(f) {
+    return f.get('id');
+}
+export function getId(val) {
+    return val === undefined ? '' : val.id();
+}
+export function getTranscriptDisplayName(val) {
+    return val === undefined
+        ? ''
+        : [val.get('name'), val.get('id')].filter(f => !!f).join(' ');
+}
+export function getGeneDisplayName(val) {
+    return val === undefined
+        ? ''
+        : [val.get('gene_name') || val.get('name'), val.get('id')]
+            .filter(f => !!f)
+            .join(' ');
+}
+//# sourceMappingURL=util.js.map

package/dist/LaunchProteinView/util.js.map

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package/dist/ProteinModelSessionExtension.d.ts

@@ -0,0 +1,11 @@
+import { Row } from './LaunchProteinView/util';
+declare const ProteinModelSessionExtension: import("mobx-state-tree").IModelType<{}, {
+    data: Row[] | undefined;
+    error: unknown;
+} & {
+    setData(a?: Row[]): void;
+    setError(e: unknown): void;
+} & {
+    afterCreate(): void;
+}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>;
+export default ProteinModelSessionExtension;

package/dist/ProteinModelSessionExtension.js

@@ -0,0 +1,53 @@
+import { addDisposer, types } from 'mobx-state-tree';
+import { autorun } from 'mobx';
+import { ungzip } from 'pako';
+import { abfetch } from './fetchUtils';
+const ProteinModelSessionExtension = types
+    .model({})
+    .volatile(() => ({
+    data: undefined,
+    error: undefined,
+}))
+    .actions(self => ({
+    setData(a) {
+        self.data = a;
+    },
+    setError(e) {
+        self.error = e;
+    },
+}))
+    .actions(self => {
+    return {
+        afterCreate() {
+            const url = 'https://jbrowse.org/demos/protein3d/mart_export.txt.gz';
+            addDisposer(self, autorun(async () => {
+                try {
+                    const ret = new TextDecoder('utf8').decode(ungzip(await abfetch(url)));
+                    const d = ret
+                        .split('\n')
+                        .slice(1)
+                        .filter(line => !!line)
+                        .map(line => {
+                        const res = line.split('\t');
+                        const [gene_id, gene_id_version, transcript_id, transcript_id_version, pdb_id, refseq_mrna_id, refseq_mrna_predicted_id,] = res;
+                        return {
+                            gene_id,
+                            gene_id_version,
+                            transcript_id_version,
+                            transcript_id,
+                            pdb_id,
+                            refseq_mrna_predicted_id,
+                            refseq_mrna_id,
+                        };
+                    });
+                    self.setData(d);
+                }
+                catch (error) {
+                    self.setError(error);
+                }
+            }));
+        },
+    };
+});
+export default ProteinModelSessionExtension;
+//# sourceMappingURL=ProteinModelSessionExtension.js.map

package/dist/ProteinModelSessionExtension.js.map

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