higlass 1.13.5 → 2.0.0

package/dist/index.html

@@ -257,14 +257,12 @@
       }
     };
 
-    const hgApi = window.hgApi = hglib.viewer(
+    const hgApi = window.hgApi = await hglib.viewer(
       document.getElementById('demo'),
       viewConfig,
       { bounded: true },
     );
 
-    hgApi.setBroadcastMousePositionGlobally(true);
-
     hgApi.on('viewConfig', () => {
       console.log('View Config changed');
     });

package/dist/package.json

@@ -0,0 +1,134 @@
+{
+  "name": "higlass",
+  "version": "2.0.0",
+  "description": "HiGlass Hi-C / genomic / large data viewer",
+  "author": "Peter Kerpedjiev <pkerpedjiev@gmail.com>",
+  "main": "dist/hglib.js",
+  "unpkg": "dist/hglib.min.js",
+  "jsdelivr": "dist/hglib.min.js",
+  "css": "dist/hglib.css",
+  "types": "dist/app/scripts/hglib.d.ts",
+  "exports": {
+    ".": {
+      "types": "./dist/app/scripts/hglib.d.ts",
+      "import": "./dist/higlass.mjs"
+    },
+    "./dist/*": "./dist/*"
+  },
+  "files": [
+    "app",
+    "dist"
+  ],
+  "keywords": [
+    "hi-c",
+    "genomics",
+    "matrix",
+    "tracks"
+  ],
+  "scripts": {
+    "start": "vite",
+    "build": "tsc -p tsconfig.emit.json && node ./scripts/build.mjs",
+    "compile": "npm run build && zip -r dist.zip dist",
+    "typecheck": "tsc",
+    "format": "biome format --write",
+    "lint": "biome ci",
+    "test": "vitest run",
+    "test-watch": "vitest watch --browser.headless=false"
+  },
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/higlass/higlass"
+  },
+  "license": "MIT",
+  "engines": {
+    "node": ">=0.12.0"
+  },
+  "dependencies": {
+    "ajv": "^6.10.0",
+    "area-polygon": "^1.0.1",
+    "box-intersect": "^1.0.1",
+    "buffer": "^6.0.3",
+    "cheerio": "1.0.0-rc.10",
+    "clsx": "^1.2.1",
+    "css-element-queries": "^1.2.3",
+    "d3-array": "^2.7.1",
+    "d3-axis": "^2.0.0",
+    "d3-brush": "^2.1.0",
+    "d3-color": "^2.0.0",
+    "d3-drag": "^2.0.0",
+    "d3-dsv": "^2.0.0",
+    "d3-format": "^2.0.0",
+    "d3-geo": "^2.0.1",
+    "d3-queue": "^3.0.7",
+    "d3-request": "^1.0.6",
+    "d3-scale": "^4.0.2",
+    "d3-selection": "^2.0.0",
+    "d3-transition": "^3.0.1",
+    "d3-zoom": "^3.0.0",
+    "genbank-parser": "^1.0.0",
+    "ndarray": "^1.0.18",
+    "prismjs": "^1.16.0",
+    "prop-types": "^15.6.0",
+    "pub-sub-es": "^2.0.1",
+    "react-checkbox-tree": "^1.7.3",
+    "react-color": "^2.13.8",
+    "react-grid-layout": "1.3.4",
+    "react-simple-code-editor": "^0.13.0",
+    "react-sortable-hoc": "^2.0.0",
+    "reactcss": "^1.2.3",
+    "robust-point-in-polygon": "^1.0.3",
+    "slugid": "^3.2.0",
+    "vkbeautify": "^0.99.3"
+  },
+  "peerDependencies": {
+    "pixi.js": "^5.0.3 || ^6.5.2",
+    "react": "^16.6.3 || ^17.0.0 || ^18.0.0",
+    "react-dom": "^16.6.3 || ^17.0.0 || ^18.0.0"
+  },
+  "devDependencies": {
+    "@babel/core": "^7.23.3",
+    "@babel/plugin-transform-classes": "^7.23.3",
+    "@babel/preset-react": "^7.23.3",
+    "@biomejs/biome": "^1.9.4",
+    "@testing-library/dom": "^10.4.0",
+    "@testing-library/user-event": "^14.6.1",
+    "@types/d3-array": "^2.7.1",
+    "@types/d3-axis": "^2.0.0",
+    "@types/d3-brush": "^2.1.0",
+    "@types/d3-color": "^2.0.0",
+    "@types/d3-drag": "^2.0.0",
+    "@types/d3-dsv": "^2.0.0",
+    "@types/d3-format": "^2.0.0",
+    "@types/d3-geo": "^2.0.1",
+    "@types/d3-queue": "^3.0.7",
+    "@types/d3-request": "^1.0.6",
+    "@types/d3-scale": "^4.0.2",
+    "@types/d3-selection": "^2.0.0",
+    "@types/d3-transition": "^3.0.1",
+    "@types/d3-zoom": "^3.0.0",
+    "@types/enzyme": "^3.10.19",
+    "@types/ndarray": "^1.0.13",
+    "@types/node": "^22.10.7",
+    "@types/prop-types": "^15.7.3",
+    "@types/react": "^17.0.2",
+    "@types/react-dom": "^17.0.2",
+    "@vitejs/plugin-react": "^4.2.0",
+    "@vitest/browser": "^3.0.5",
+    "@wojtekmaj/enzyme-adapter-react-17": "^0.6.7",
+    "ajv-cli": "^5.0.0",
+    "chai": "^4.3.4",
+    "enzyme": "^3.11.0",
+    "esbuild": "^0.19.8",
+    "msw": "^2.7.0",
+    "pixi.js": "^6.5.2",
+    "playwright": "^1.49.1",
+    "react": "^17.0.2",
+    "react-dom": "^17.0.2",
+    "sass": "^1.54.5",
+    "typescript": "^5.7.3",
+    "vite": "^5.0.3",
+    "vite-plugin-babel": "^1.1.3",
+    "vite-plugin-css-injected-by-js": "^3.3.0",
+    "vitest": "^3.0.5"
+  }
+}

package/package.json

@@ -1,14 +1,16 @@
 {
   "name": "higlass",
-  "version": "1.13.5",
+  "version": "2.0.0",
   "description": "HiGlass Hi-C / genomic / large data viewer",
   "author": "Peter Kerpedjiev <pkerpedjiev@gmail.com>",
   "main": "dist/hglib.js",
   "unpkg": "dist/hglib.min.js",
   "jsdelivr": "dist/hglib.min.js",
   "css": "dist/hglib.css",
+  "types": "dist/app/scripts/hglib.d.ts",
   "exports": {
     ".": {
+      "types": "./dist/app/scripts/hglib.d.ts",
       "import": "./dist/higlass.mjs"
     },
     "./dist/*": "./dist/*"
@@ -24,13 +26,14 @@
     "tracks"
   ],
   "scripts": {
-    "test": "wtr",
     "start": "vite",
-    "build": "node ./scripts/build.mjs",
+    "build": "tsc -p tsconfig.emit.json && node ./scripts/build.mjs",
     "compile": "npm run build && zip -r dist.zip dist",
     "typecheck": "tsc",
-    "format": "prettier --ignore-path=.gitignore --write \"**/*.{mjs,js,jsx,ts}\"",
-    "lint": "prettier --ignore-path=.gitignore --check \"**/*.{mjs,js,jsx,ts}\" && eslint --ignore-path=.gitignore \"**/*.{mjs,js,jsx}\""
+    "format": "biome format --write",
+    "lint": "biome ci",
+    "test": "vitest run",
+    "test-watch": "vitest watch --browser.headless=false"
   },
   "repository": {
     "type": "git",
@@ -42,8 +45,10 @@
   },
   "dependencies": {
     "ajv": "^6.10.0",
+    "area-polygon": "^1.0.1",
     "box-intersect": "^1.0.1",
     "buffer": "^6.0.3",
+    "cheerio": "1.0.0-rc.10",
     "clsx": "^1.2.1",
     "css-element-queries": "^1.2.3",
     "d3-array": "^2.7.1",
@@ -60,23 +65,19 @@
     "d3-selection": "^2.0.0",
     "d3-transition": "^3.0.1",
     "d3-zoom": "^3.0.0",
-    "dom-scroll-into-view": "^1.2.1",
-    "enzyme-adapter-react-16": "^1.15.8",
     "genbank-parser": "^1.0.0",
     "ndarray": "^1.0.18",
-    "pako": "^1.0.10",
     "prismjs": "^1.16.0",
     "prop-types": "^15.6.0",
     "pub-sub-es": "^2.0.1",
     "react-checkbox-tree": "^1.7.3",
     "react-color": "^2.13.8",
-    "react-grid-layout": "^0.16.6",
-    "react-simple-code-editor": "^0.9.10",
-    "react-sortable-hoc": "^1.10.1",
+    "react-grid-layout": "1.3.4",
+    "react-simple-code-editor": "^0.13.0",
+    "react-sortable-hoc": "^2.0.0",
     "reactcss": "^1.2.3",
     "robust-point-in-polygon": "^1.0.3",
     "slugid": "^3.2.0",
-    "url-parse": "^1.4.3",
     "vkbeautify": "^0.99.3"
   },
   "peerDependencies": {
@@ -88,6 +89,9 @@
     "@babel/core": "^7.23.3",
     "@babel/plugin-transform-classes": "^7.23.3",
     "@babel/preset-react": "^7.23.3",
+    "@biomejs/biome": "^1.9.4",
+    "@testing-library/dom": "^10.4.0",
+    "@testing-library/user-event": "^14.6.1",
     "@types/d3-array": "^2.7.1",
     "@types/d3-axis": "^2.0.0",
     "@types/d3-brush": "^2.1.0",
@@ -102,35 +106,29 @@
     "@types/d3-selection": "^2.0.0",
     "@types/d3-transition": "^3.0.1",
     "@types/d3-zoom": "^3.0.0",
+    "@types/enzyme": "^3.10.19",
     "@types/ndarray": "^1.0.13",
-    "@types/pako": "^2.0.2",
+    "@types/node": "^22.10.7",
     "@types/prop-types": "^15.7.3",
     "@types/react": "^17.0.2",
     "@types/react-dom": "^17.0.2",
     "@vitejs/plugin-react": "^4.2.0",
-    "@web/test-runner": "^0.17.2",
-    "@web/test-runner-puppeteer": "^0.14.1",
+    "@vitest/browser": "^3.0.5",
     "@wojtekmaj/enzyme-adapter-react-17": "^0.6.7",
     "ajv-cli": "^5.0.0",
     "chai": "^4.3.4",
-    "enzyme": "^3.4.1",
+    "enzyme": "^3.11.0",
     "esbuild": "^0.19.8",
-    "eslint": "^8.23.0",
-    "eslint-config-airbnb": "^19.0.4",
-    "eslint-config-prettier": "^8.5.0",
-    "eslint-plugin-import": "^2.26.0",
-    "eslint-plugin-jsx-a11y": "^6.6.1",
-    "eslint-plugin-react": "^7.31.8",
-    "eslint-plugin-react-hooks": "^4.6.0",
+    "msw": "^2.7.0",
     "pixi.js": "^6.5.2",
-    "prettier": "^2.5.1",
+    "playwright": "^1.49.1",
     "react": "^17.0.2",
     "react-dom": "^17.0.2",
     "sass": "^1.54.5",
-    "tinyspy": "^1.0.2",
-    "typescript": "^5.2.2",
+    "typescript": "^5.7.3",
     "vite": "^5.0.3",
     "vite-plugin-babel": "^1.1.3",
-    "vite-plugin-css-injected-by-js": "^3.3.0"
+    "vite-plugin-css-injected-by-js": "^3.3.0",
+    "vitest": "^3.0.5"
   }
 }