higlass 1.13.5 → 2.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (392) hide show
  1. package/README.md +48 -54
  2. package/app/globals.d.ts +1 -1
  3. package/app/missing-types.d.ts +4 -1
  4. package/app/scripts/AddTrackDialog.jsx +11 -4
  5. package/app/scripts/AddTrackPositionMenu.jsx +28 -7
  6. package/app/scripts/Annotations1dTrack.js +90 -251
  7. package/app/scripts/Annotations2dTrack.js +12 -7
  8. package/app/scripts/Autocomplete.jsx +13 -28
  9. package/app/scripts/AxisPixi.js +6 -10
  10. package/app/scripts/BarTrack.js +3 -3
  11. package/app/scripts/BedLikeTrack.js +556 -449
  12. package/app/scripts/Button.jsx +1 -1
  13. package/app/scripts/CNVIntervalTrack.js +1 -1
  14. package/app/scripts/CenterTrack.jsx +8 -7
  15. package/app/scripts/Chromosome2DAnnotations.js +1 -1
  16. package/app/scripts/Chromosome2DLabels.js +1 -1
  17. package/app/scripts/ChromosomeGrid.js +49 -38
  18. package/app/scripts/ChromosomeInfo.js +1 -1
  19. package/app/scripts/CombinedTrack.js +3 -1
  20. package/app/scripts/ConfigTrackMenu.jsx +1 -1
  21. package/app/scripts/ConfigViewMenu.jsx +2 -2
  22. package/app/scripts/ContextMenuContainer.jsx +4 -2
  23. package/app/scripts/ContextMenuItem.jsx +14 -2
  24. package/app/scripts/CrossRule.js +1 -1
  25. package/app/scripts/CustomTrackDialog.jsx +2 -2
  26. package/app/scripts/Dialog.jsx +2 -2
  27. package/app/scripts/DragListeningDiv.jsx +1 -1
  28. package/app/scripts/DraggableDiv.jsx +2 -3
  29. package/app/scripts/ExportLinkDialog.jsx +1 -1
  30. package/app/scripts/FilledLine.js +349 -0
  31. package/app/scripts/GalleryTracks.jsx +77 -78
  32. package/app/scripts/GenomePositionSearchBox.jsx +184 -482
  33. package/app/scripts/HeatmapOptions.jsx +4 -2
  34. package/app/scripts/HeatmapTiledPixiTrack.js +23 -32
  35. package/app/scripts/HiGlassComponent.jsx +515 -444
  36. package/app/scripts/HiGlassComponentContext.js +5 -0
  37. package/app/scripts/Horizontal1dHeatmapTrack.js +1 -1
  38. package/app/scripts/Horizontal2DDomainsTrack.js +1 -1
  39. package/app/scripts/HorizontalChromosomeLabels.js +28 -22
  40. package/app/scripts/HorizontalGeneAnnotationsTrack.js +1 -1
  41. package/app/scripts/HorizontalHeatmapTrack.js +2 -2
  42. package/app/scripts/HorizontalMultivecTrack.js +6 -7
  43. package/app/scripts/HorizontalRule.js +1 -2
  44. package/app/scripts/HorizontalTiled1DPixiTrack.js +4 -4
  45. package/app/scripts/HorizontalTiledPlot.jsx +9 -9
  46. package/app/scripts/LeftTrackModifier.js +4 -0
  47. package/app/scripts/ListWrapper.jsx +1 -2
  48. package/app/scripts/MapboxTilesTrack.js +1 -2
  49. package/app/scripts/Modal.jsx +2 -2
  50. package/app/scripts/MoveableTrack.jsx +10 -12
  51. package/app/scripts/NestedContextMenu.jsx +2 -1
  52. package/app/scripts/OSMTileIdsTrack.js +1 -1
  53. package/app/scripts/OverlayTrack.js +4 -4
  54. package/app/scripts/PixiTrack.js +27 -13
  55. package/app/scripts/PlotTypeChooser.jsx +3 -4
  56. package/app/scripts/SearchField.js +5 -5
  57. package/app/scripts/SeriesListItems.jsx +3 -4
  58. package/app/scripts/SeriesListMenu.jsx +95 -53
  59. package/app/scripts/SeriesListSubmenuMixin.jsx +2 -1
  60. package/app/scripts/SketchInlinePicker.jsx +2 -2
  61. package/app/scripts/SortableList.jsx +1 -1
  62. package/app/scripts/Tiled1DPixiTrack.js +4 -1
  63. package/app/scripts/TiledPixiTrack.js +244 -102
  64. package/app/scripts/TiledPlot.jsx +565 -118
  65. package/app/scripts/TilesetFinder.jsx +12 -4
  66. package/app/scripts/Track.js +1 -1
  67. package/app/scripts/TrackArea.jsx +4 -0
  68. package/app/scripts/TrackControl.jsx +2 -2
  69. package/app/scripts/TrackRenderer.jsx +32 -33
  70. package/app/scripts/ValueIntervalTrack.js +1 -1
  71. package/app/scripts/VerticalRule.js +2 -2
  72. package/app/scripts/VerticalTiledPlot.jsx +7 -7
  73. package/app/scripts/ViewConfigEditor.jsx +1 -1
  74. package/app/scripts/ViewContextMenu.jsx +53 -5
  75. package/app/scripts/ViewHeader.jsx +9 -9
  76. package/app/scripts/ViewportTracker2D.js +1 -1
  77. package/app/scripts/api.js +92 -12
  78. package/app/scripts/configs/available-track-types.js +1 -1
  79. package/app/scripts/configs/index.js +6 -1
  80. package/app/scripts/configs/positions-by-datatype.js +2 -2
  81. package/app/scripts/configs/primitives.js +2 -0
  82. package/app/scripts/configs/themes.js +0 -1
  83. package/app/scripts/configs/tracks-info-by-type.js +11 -8
  84. package/app/scripts/configs/tracks-info.js +3 -2
  85. package/app/scripts/d3-context-menu.js +3 -4
  86. package/app/scripts/data-fetchers/DataFetcher.js +35 -36
  87. package/app/scripts/data-fetchers/genbank-fetcher.js +13 -22
  88. package/app/scripts/data-fetchers/local-tile-fetcher.js +10 -8
  89. package/app/scripts/hglib.jsx +62 -71
  90. package/app/scripts/hocs/with-modal.jsx +32 -10
  91. package/app/scripts/hocs/with-pub-sub.js +12 -3
  92. package/app/scripts/hocs/with-theme.jsx +21 -14
  93. package/app/scripts/icons.jsx +3 -2
  94. package/app/scripts/mixwith.js +2 -2
  95. package/app/scripts/options-info.js +49 -11
  96. package/app/scripts/plugins/get-data-fetcher.js +2 -3
  97. package/app/scripts/services/chrom-info.js +32 -4
  98. package/app/scripts/services/element-resize-listener.js +2 -2
  99. package/app/scripts/services/index.js +0 -1
  100. package/app/scripts/services/tile-proxy.js +368 -285
  101. package/app/scripts/services/worker.js +31 -28
  102. package/app/scripts/test-helpers/index.js +2 -1
  103. package/app/scripts/test-helpers/test-helpers.jsx +157 -69
  104. package/app/scripts/types.ts +118 -47
  105. package/app/scripts/utils/LruCache.js +3 -2
  106. package/app/scripts/utils/assert.js +19 -0
  107. package/app/scripts/utils/background-task-scheduler.js +2 -0
  108. package/app/scripts/utils/color-domain-to-rgba-array.js +13 -3
  109. package/app/scripts/utils/copy-text-to-clipboard.js +36 -0
  110. package/app/scripts/utils/decompress.js +33 -0
  111. package/app/scripts/utils/default-tracks.js +46 -0
  112. package/app/scripts/utils/dict-items.js +1 -0
  113. package/app/scripts/utils/dict-keys.js +1 -0
  114. package/app/scripts/utils/dict-values.js +1 -0
  115. package/app/scripts/utils/expand-combined-tracks.js +11 -7
  116. package/app/scripts/utils/fill-in-min-widths.js +47 -21
  117. package/app/scripts/utils/flatten.js +0 -1
  118. package/app/scripts/utils/get-aggregation-function.js +1 -1
  119. package/app/scripts/utils/get-default-track-for-datatype.js +37 -10
  120. package/app/scripts/utils/get-default-tracks-for-datatype.ts +46 -0
  121. package/app/scripts/utils/get-higlass-components.js +27 -3
  122. package/app/scripts/utils/get-track-position-by-uid.js +8 -1
  123. package/app/scripts/utils/get-xylofon.js +12 -9
  124. package/app/scripts/utils/has-parent.js +5 -5
  125. package/app/scripts/utils/hex-string-to-int.js +1 -1
  126. package/app/scripts/utils/index.js +1 -0
  127. package/app/scripts/utils/interval-tree.js +222 -177
  128. package/app/scripts/utils/load-chrom-infos.js +4 -1
  129. package/app/scripts/utils/pixi-text-to-svg.js +5 -9
  130. package/app/scripts/utils/positioned-tracks-to-all-tracks.js +55 -0
  131. package/app/scripts/utils/range-query-2d.js +3 -3
  132. package/app/scripts/utils/reduce.js +12 -5
  133. package/app/scripts/utils/segments-to-rows.js +14 -11
  134. package/app/scripts/utils/svg-line.js +7 -8
  135. package/app/scripts/utils/type-guards.js +16 -7
  136. package/app/scripts/utils/visit-positioned-tracks.js +9 -4
  137. package/app/styles/AddTrackPositionMenu.module.scss +37 -0
  138. package/app/styles/HiGlass.module.scss +3 -1
  139. package/app/styles/d3-context-menu.css +0 -1
  140. package/app/styles/prism.css +1 -0
  141. package/dist/app/schema.json +525 -0
  142. package/dist/app/scripts/AddTrackDialog.d.ts +64 -0
  143. package/dist/app/scripts/AddTrackPositionMenu.d.ts +5 -0
  144. package/dist/app/scripts/Annotations1dTrack.d.ts +15 -0
  145. package/dist/app/scripts/Annotations2dTrack.d.ts +95 -0
  146. package/dist/app/scripts/ArrowheadDomainsTrack.d.ts +36 -0
  147. package/dist/app/scripts/Autocomplete.d.ts +102 -0
  148. package/dist/app/scripts/AxisPixi.d.ts +25 -0
  149. package/dist/app/scripts/BarTrack.d.ts +28 -0
  150. package/dist/app/scripts/BedLikeTrack.d.ts +84 -0
  151. package/dist/app/scripts/Button.d.ts +3 -0
  152. package/dist/app/scripts/CNVIntervalTrack.d.ts +12 -0
  153. package/dist/app/scripts/CenterTiledPlot.d.ts +3 -0
  154. package/dist/app/scripts/CenterTrack.d.ts +92 -0
  155. package/dist/app/scripts/Chromosome2DAnnotations.d.ts +10 -0
  156. package/dist/app/scripts/Chromosome2DLabels.d.ts +13 -0
  157. package/dist/app/scripts/ChromosomeGrid.d.ts +24 -0
  158. package/dist/app/scripts/ChromosomeInfo.d.ts +14 -0
  159. package/dist/app/scripts/CloseTrackMenu.d.ts +10 -0
  160. package/dist/app/scripts/CombinedTrack.d.ts +32 -0
  161. package/dist/app/scripts/ConfigTrackMenu.d.ts +10 -0
  162. package/dist/app/scripts/ConfigViewMenu.d.ts +34 -0
  163. package/dist/app/scripts/ConfigureSeriesMenu.d.ts +3 -0
  164. package/dist/app/scripts/ContextMenuContainer.d.ts +36 -0
  165. package/dist/app/scripts/ContextMenuItem.d.ts +34 -0
  166. package/dist/app/scripts/Cross.d.ts +3 -0
  167. package/dist/app/scripts/CrossRule.d.ts +24 -0
  168. package/dist/app/scripts/CustomTrackDialog.d.ts +17 -0
  169. package/dist/app/scripts/Dialog.d.ts +5 -0
  170. package/dist/app/scripts/DivergentBarTrack.d.ts +4 -0
  171. package/dist/app/scripts/DragListeningDiv.d.ts +32 -0
  172. package/dist/app/scripts/DraggableDiv.d.ts +63 -0
  173. package/dist/app/scripts/ExportLinkDialog.d.ts +21 -0
  174. package/dist/app/scripts/FilledLine.d.ts +5 -0
  175. package/dist/app/scripts/FixedTrack.d.ts +5 -0
  176. package/dist/app/scripts/GalleryTracks.d.ts +20 -0
  177. package/dist/app/scripts/GenomePositionSearchBox.d.ts +95 -0
  178. package/dist/app/scripts/HeatmapOptions.d.ts +30 -0
  179. package/dist/app/scripts/HeatmapTiledPixiTrack.d.ts +184 -0
  180. package/dist/app/scripts/HiGlassComponent.d.ts +762 -0
  181. package/dist/app/scripts/HiGlassComponentContext.d.ts +3 -0
  182. package/dist/app/scripts/HiGlassTrackComponent.d.ts +37 -0
  183. package/dist/app/scripts/Horizontal1dHeatmapTrack.d.ts +9 -0
  184. package/dist/app/scripts/Horizontal2DDomainsTrack.d.ts +21 -0
  185. package/dist/app/scripts/HorizontalChromosomeLabels.d.ts +47 -0
  186. package/dist/app/scripts/HorizontalGeneAnnotationsTrack.d.ts +25 -0
  187. package/dist/app/scripts/HorizontalHeatmapTrack.d.ts +12 -0
  188. package/dist/app/scripts/HorizontalItem.d.ts +3 -0
  189. package/dist/app/scripts/HorizontalLine1DPixiTrack.d.ts +23 -0
  190. package/dist/app/scripts/HorizontalMultivecTrack.d.ts +50 -0
  191. package/dist/app/scripts/HorizontalPoint1DPixiTrack.d.ts +5 -0
  192. package/dist/app/scripts/HorizontalRule.d.ts +22 -0
  193. package/dist/app/scripts/HorizontalTiled1DPixiTrack.d.ts +26 -0
  194. package/dist/app/scripts/HorizontalTiledPlot.d.ts +49 -0
  195. package/dist/app/scripts/HorizontalTrack.d.ts +6 -0
  196. package/dist/app/scripts/Id2DTiledPixiTrack.d.ts +10 -0
  197. package/dist/app/scripts/IdHorizontal1DTiledPixiTrack.d.ts +6 -0
  198. package/dist/app/scripts/IdVertical1DTiledPixiTrack.d.ts +7 -0
  199. package/dist/app/scripts/LeftAxisTrack.d.ts +9 -0
  200. package/dist/app/scripts/LeftTrackModifier.d.ts +29 -0
  201. package/dist/app/scripts/ListWrapper.d.ts +64 -0
  202. package/dist/app/scripts/MapboxTilesTrack.d.ts +9 -0
  203. package/dist/app/scripts/Modal.d.ts +5 -0
  204. package/dist/app/scripts/MoveableTrack.d.ts +18 -0
  205. package/dist/app/scripts/NestedContextMenu.d.ts +7 -0
  206. package/dist/app/scripts/OSMTileIdsTrack.d.ts +5 -0
  207. package/dist/app/scripts/OSMTilesTrack.d.ts +129 -0
  208. package/dist/app/scripts/OverlayTrack.d.ts +13 -0
  209. package/dist/app/scripts/PixiTrack.d.ts +174 -0
  210. package/dist/app/scripts/PlotTypeChooser.d.ts +25 -0
  211. package/dist/app/scripts/PopupMenu.d.ts +28 -0
  212. package/dist/app/scripts/RasterTilesTrack.d.ts +9 -0
  213. package/dist/app/scripts/RuleMixin.d.ts +2 -0
  214. package/dist/app/scripts/SVGTrack.d.ts +15 -0
  215. package/dist/app/scripts/SearchField.d.ts +13 -0
  216. package/dist/app/scripts/SeriesListItems.d.ts +2 -0
  217. package/dist/app/scripts/SeriesListMenu.d.ts +51 -0
  218. package/dist/app/scripts/SeriesListSubmenuMixin.d.ts +2 -0
  219. package/dist/app/scripts/SketchInlinePicker.d.ts +25 -0
  220. package/dist/app/scripts/SortableList.d.ts +22 -0
  221. package/dist/app/scripts/SquareMarkersTrack.d.ts +22 -0
  222. package/dist/app/scripts/Tiled1DPixiTrack.d.ts +60 -0
  223. package/dist/app/scripts/TiledPixiTrack.d.ts +369 -0
  224. package/dist/app/scripts/TiledPlot.d.ts +313 -0
  225. package/dist/app/scripts/TilesetFinder.d.ts +65 -0
  226. package/dist/app/scripts/TopAxisTrack.d.ts +9 -0
  227. package/dist/app/scripts/Track.d.ts +196 -0
  228. package/dist/app/scripts/TrackArea.d.ts +26 -0
  229. package/dist/app/scripts/TrackControl.d.ts +5 -0
  230. package/dist/app/scripts/TrackRenderer.d.ts +724 -0
  231. package/dist/app/scripts/UnknownPixiTrack.d.ts +7 -0
  232. package/dist/app/scripts/ValueIntervalTrack.d.ts +6 -0
  233. package/dist/app/scripts/VerticalItem.d.ts +3 -0
  234. package/dist/app/scripts/VerticalRule.d.ts +21 -0
  235. package/dist/app/scripts/VerticalTiled1DPixiTrack.d.ts +6 -0
  236. package/dist/app/scripts/VerticalTiledPlot.d.ts +50 -0
  237. package/dist/app/scripts/VerticalTrack.d.ts +6 -0
  238. package/dist/app/scripts/ViewConfigEditor.d.ts +53 -0
  239. package/dist/app/scripts/ViewContextMenu.d.ts +17 -0
  240. package/dist/app/scripts/ViewHeader.d.ts +75 -0
  241. package/dist/app/scripts/ViewportTracker2D.d.ts +17 -0
  242. package/dist/app/scripts/ViewportTracker2DPixi.d.ts +11 -0
  243. package/dist/app/scripts/ViewportTrackerHorizontal.d.ts +17 -0
  244. package/dist/app/scripts/ViewportTrackerVertical.d.ts +17 -0
  245. package/dist/app/scripts/api.d.ts +640 -0
  246. package/dist/app/scripts/configs/available-track-types.d.ts +2 -0
  247. package/dist/app/scripts/configs/colormaps.d.ts +2 -0
  248. package/dist/app/scripts/configs/datatype-to-track-type.d.ts +4 -0
  249. package/dist/app/scripts/configs/default-tracks-for-datatype.d.ts +38 -0
  250. package/dist/app/scripts/configs/dense-data-extrema-config.d.ts +2 -0
  251. package/dist/app/scripts/configs/globals.d.ts +5 -0
  252. package/dist/app/scripts/configs/index.d.ts +16 -0
  253. package/dist/app/scripts/configs/positions-by-datatype.d.ts +2 -0
  254. package/dist/app/scripts/configs/primitives.d.ts +20 -0
  255. package/dist/app/scripts/configs/themes.d.ts +3 -0
  256. package/dist/app/scripts/configs/tracks-info-by-type.d.ts +4 -0
  257. package/dist/app/scripts/configs/tracks-info.d.ts +24 -0
  258. package/dist/app/scripts/d3-context-menu.d.ts +2 -0
  259. package/dist/app/scripts/data-fetchers/DataFetcher.d.ts +151 -0
  260. package/dist/app/scripts/data-fetchers/genbank-fetcher.d.ts +86 -0
  261. package/dist/app/scripts/data-fetchers/index.d.ts +3 -0
  262. package/dist/app/scripts/data-fetchers/local-tile-fetcher.d.ts +47 -0
  263. package/dist/app/scripts/gosling-exports.d.ts +17 -0
  264. package/dist/app/scripts/hglib.d.ts +24 -0
  265. package/dist/app/scripts/hocs/with-modal.d.ts +19 -0
  266. package/dist/app/scripts/hocs/with-pub-sub.d.ts +22 -0
  267. package/dist/app/scripts/hocs/with-theme.d.ts +13 -0
  268. package/dist/app/scripts/icons.d.ts +161 -0
  269. package/dist/app/scripts/mixwith.d.ts +27 -0
  270. package/dist/app/scripts/options-info.d.ts +1355 -0
  271. package/dist/app/scripts/plugins/available-for-plugins.d.ts +2338 -0
  272. package/dist/app/scripts/plugins/get-data-fetcher.d.ts +2 -0
  273. package/dist/app/scripts/plugins/index.d.ts +2 -0
  274. package/dist/app/scripts/services/chrom-info.d.ts +10 -0
  275. package/dist/app/scripts/services/dom-event.d.ts +7 -0
  276. package/dist/app/scripts/services/element-resize-listener.d.ts +5 -0
  277. package/dist/app/scripts/services/index.d.ts +5 -0
  278. package/dist/app/scripts/services/tile-proxy.d.ts +180 -0
  279. package/dist/app/scripts/services/worker.d.ts +157 -0
  280. package/dist/app/scripts/symbol.d.ts +13 -0
  281. package/dist/app/scripts/test-helpers/index.d.ts +1 -0
  282. package/dist/app/scripts/test-helpers/test-helpers.d.ts +33 -0
  283. package/dist/app/scripts/track-utils.d.ts +73 -0
  284. package/dist/app/scripts/types.d.ts +199 -0
  285. package/dist/app/scripts/utils/DenseDataExtrema1D.d.ts +88 -0
  286. package/dist/app/scripts/utils/DenseDataExtrema2D.d.ts +97 -0
  287. package/dist/app/scripts/utils/LruCache.d.ts +44 -0
  288. package/dist/app/scripts/utils/abs-to-chr.d.ts +14 -0
  289. package/dist/app/scripts/utils/accessor-transposition.d.ts +14 -0
  290. package/dist/app/scripts/utils/add-arrays.d.ts +18 -0
  291. package/dist/app/scripts/utils/add-class.d.ts +8 -0
  292. package/dist/app/scripts/utils/add-event-listener-once.d.ts +11 -0
  293. package/dist/app/scripts/utils/assert.d.ts +17 -0
  294. package/dist/app/scripts/utils/background-task-scheduler.d.ts +47 -0
  295. package/dist/app/scripts/utils/base64-to-canvas.d.ts +9 -0
  296. package/dist/app/scripts/utils/chr-to-abs.d.ts +10 -0
  297. package/dist/app/scripts/utils/chrom-info-bisector.d.ts +4 -0
  298. package/dist/app/scripts/utils/clone-event.d.ts +12 -0
  299. package/dist/app/scripts/utils/color-domain-to-rgba-array.d.ts +13 -0
  300. package/dist/app/scripts/utils/color-to-hex.d.ts +9 -0
  301. package/dist/app/scripts/utils/color-to-rgba.d.ts +9 -0
  302. package/dist/app/scripts/utils/copy-text-to-clipboard.d.ts +2 -0
  303. package/dist/app/scripts/utils/data-to-genomic-loci.d.ts +11 -0
  304. package/dist/app/scripts/utils/debounce.d.ts +5 -0
  305. package/dist/app/scripts/utils/dec-to-hex-str.d.ts +8 -0
  306. package/dist/app/scripts/utils/decompress.d.ts +27 -0
  307. package/dist/app/scripts/utils/default-tracks.d.ts +3 -0
  308. package/dist/app/scripts/utils/dict-from-tuples.d.ts +11 -0
  309. package/dist/app/scripts/utils/dict-items.d.ts +18 -0
  310. package/dist/app/scripts/utils/dict-keys.d.ts +10 -0
  311. package/dist/app/scripts/utils/dict-values.d.ts +8 -0
  312. package/dist/app/scripts/utils/download.d.ts +7 -0
  313. package/dist/app/scripts/utils/expand-combined-tracks.d.ts +11 -0
  314. package/dist/app/scripts/utils/fake-pub-sub.d.ts +11 -0
  315. package/dist/app/scripts/utils/fill-in-min-widths.d.ts +44 -0
  316. package/dist/app/scripts/utils/flatten.d.ts +9 -0
  317. package/dist/app/scripts/utils/for-each.d.ts +9 -0
  318. package/dist/app/scripts/utils/forward-event.d.ts +7 -0
  319. package/dist/app/scripts/utils/genome-loci-to-pixels.d.ts +9 -0
  320. package/dist/app/scripts/utils/genomic-range-to-chromosome-chunks.d.ts +21 -0
  321. package/dist/app/scripts/utils/get-aggregation-function.d.ts +10 -0
  322. package/dist/app/scripts/utils/get-default-track-for-datatype.d.ts +21 -0
  323. package/dist/app/scripts/utils/get-default-tracks-for-datatype.d.ts +3 -0
  324. package/dist/app/scripts/utils/get-element-dim.d.ts +7 -0
  325. package/dist/app/scripts/utils/get-higlass-components.d.ts +7 -0
  326. package/dist/app/scripts/utils/get-track-by-uid.d.ts +7 -0
  327. package/dist/app/scripts/utils/get-track-conf-from-hgc.d.ts +10 -0
  328. package/dist/app/scripts/utils/get-track-obj-by-id.d.ts +2 -0
  329. package/dist/app/scripts/utils/get-track-position-by-uid.d.ts +13 -0
  330. package/dist/app/scripts/utils/get-xylofon.d.ts +2 -0
  331. package/dist/app/scripts/utils/gradient.d.ts +14 -0
  332. package/dist/app/scripts/utils/has-class.d.ts +8 -0
  333. package/dist/app/scripts/utils/has-parent.d.ts +9 -0
  334. package/dist/app/scripts/utils/hex-string-to-int.d.ts +14 -0
  335. package/dist/app/scripts/utils/index.d.ts +89 -0
  336. package/dist/app/scripts/utils/interval-tree.d.ts +109 -0
  337. package/dist/app/scripts/utils/into-the-void.d.ts +6 -0
  338. package/dist/app/scripts/utils/is-track-or-child-track.d.ts +7 -0
  339. package/dist/app/scripts/utils/is-track-range-selectable.d.ts +2 -0
  340. package/dist/app/scripts/utils/is-within.d.ts +12 -0
  341. package/dist/app/scripts/utils/lat-to-y.d.ts +9 -0
  342. package/dist/app/scripts/utils/lng-to-x.d.ts +8 -0
  343. package/dist/app/scripts/utils/load-chrom-infos.d.ts +8 -0
  344. package/dist/app/scripts/utils/map.d.ts +13 -0
  345. package/dist/app/scripts/utils/max-non-zero.d.ts +6 -0
  346. package/dist/app/scripts/utils/max.d.ts +10 -0
  347. package/dist/app/scripts/utils/min-non-zero.d.ts +6 -0
  348. package/dist/app/scripts/utils/min.d.ts +10 -0
  349. package/dist/app/scripts/utils/mod.d.ts +9 -0
  350. package/dist/app/scripts/utils/ndarray-assign.d.ts +2 -0
  351. package/dist/app/scripts/utils/ndarray-flatten.d.ts +2 -0
  352. package/dist/app/scripts/utils/ndarray-to-list.d.ts +2 -0
  353. package/dist/app/scripts/utils/numericify-version.d.ts +6 -0
  354. package/dist/app/scripts/utils/obj-vals.d.ts +8 -0
  355. package/dist/app/scripts/utils/or.d.ts +8 -0
  356. package/dist/app/scripts/utils/parse-chromsizes-rows.d.ts +34 -0
  357. package/dist/app/scripts/utils/pixi-text-to-svg.d.ts +2 -0
  358. package/dist/app/scripts/utils/positioned-tracks-to-all-tracks.d.ts +26 -0
  359. package/dist/app/scripts/utils/q.d.ts +18 -0
  360. package/dist/app/scripts/utils/rad-to-deg.d.ts +7 -0
  361. package/dist/app/scripts/utils/range-query-2d.d.ts +17 -0
  362. package/dist/app/scripts/utils/reduce.d.ts +14 -0
  363. package/dist/app/scripts/utils/rel-to-abs-chrom-pos.d.ts +10 -0
  364. package/dist/app/scripts/utils/remove-class.d.ts +7 -0
  365. package/dist/app/scripts/utils/reset-d3-brush-style.d.ts +10 -0
  366. package/dist/app/scripts/utils/rgb-to-hex.d.ts +8 -0
  367. package/dist/app/scripts/utils/scales-center-and-k.d.ts +12 -0
  368. package/dist/app/scripts/utils/scales-to-genome-loci.d.ts +3 -0
  369. package/dist/app/scripts/utils/segments-to-rows.d.ts +15 -0
  370. package/dist/app/scripts/utils/selected-items-to-cum-weights.d.ts +12 -0
  371. package/dist/app/scripts/utils/selected-items-to-size.d.ts +13 -0
  372. package/dist/app/scripts/utils/show-mouse-position.d.ts +54 -0
  373. package/dist/app/scripts/utils/some.d.ts +10 -0
  374. package/dist/app/scripts/utils/sum.d.ts +8 -0
  375. package/dist/app/scripts/utils/svg-line.d.ts +2 -0
  376. package/dist/app/scripts/utils/throttle-and-debounce.d.ts +33 -0
  377. package/dist/app/scripts/utils/tile-to-canvas.d.ts +9 -0
  378. package/dist/app/scripts/utils/timeout.d.ts +3 -0
  379. package/dist/app/scripts/utils/to-void.d.ts +3 -0
  380. package/dist/app/scripts/utils/total-track-pixel-height.d.ts +27 -0
  381. package/dist/app/scripts/utils/trim-trailing-slash.d.ts +7 -0
  382. package/dist/app/scripts/utils/type-guards.d.ts +36 -0
  383. package/dist/app/scripts/utils/value-to-color.d.ts +12 -0
  384. package/dist/app/scripts/utils/visit-positioned-tracks.d.ts +18 -0
  385. package/dist/app/scripts/utils/visit-tracks.d.ts +9 -0
  386. package/dist/esm.html +1 -3
  387. package/dist/hglib.js +86315 -100592
  388. package/dist/hglib.min.js +123 -131
  389. package/dist/higlass.mjs +88861 -103138
  390. package/dist/index.html +1 -3
  391. package/dist/package.json +134 -0
  392. package/package.json +25 -27
@@ -0,0 +1,2338 @@
1
+ declare const _default: {
2
+ chromosomes: {
3
+ ChromosomeInfo: typeof ChromosomeInfo;
4
+ SearchField: typeof SearchField;
5
+ };
6
+ libraries: {
7
+ d3Array: typeof d3Array;
8
+ d3Axis: typeof d3Axis;
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+ d3Brush: typeof d3Brush;
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+ d3Color: typeof d3Color;
11
+ d3Drag: typeof d3Drag;
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+ d3Dsv: typeof d3Dsv;
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+ d3Format: typeof d3Format;
14
+ d3Geo: typeof d3Geo;
15
+ d3Queue: typeof d3Queue;
16
+ d3Request: typeof d3Request;
17
+ d3Scale: typeof d3Scale;
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+ d3Selection: typeof d3Selection;
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+ d3Transition: typeof d3Transition;
20
+ d3Zoom: typeof d3Zoom;
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+ PIXI: typeof import("pixi.js");
22
+ mix: (superclass?: Function) => {
23
+ superclass: any;
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+ with(...mixins: Array<(mixin: MixinFunction) => MixinFunction>): Function;
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+ };
26
+ slugid: typeof slugid;
27
+ };
28
+ tracks: {
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+ Annotations1dTrack: typeof Annotations1dTrack;
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+ Annotations2dTrack: typeof Annotations2dTrack;
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+ ArrowheadDomainsTrack: typeof ArrowheadDomainsTrack;
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+ BarTrack: typeof BarTrack;
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+ BedLikeTrack: typeof BedLikeTrack;
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+ CNVIntervalTrack: typeof CNVIntervalTrack;
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+ Chromosome2DAnnotations: typeof Chromosome2DAnnotations;
36
+ Chromosome2DLabels: typeof Chromosome2DLabels;
37
+ ChromosomeGrid: typeof ChromosomeGrid;
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+ CombinedTrack: typeof CombinedTrack;
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+ CrossRule: typeof CrossRule;
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+ DivergentBarTrack: typeof DivergentBarTrack;
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+ HeatmapTiledPixiTrack: typeof HeatmapTiledPixiTrack;
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+ Horizontal1dHeatmapTrack: typeof Horizontal1dHeatmapTrack;
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+ Horizontal2DDomainsTrack: typeof Horizontal2DDomainsTrack;
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+ HorizontalChromosomeLabels: typeof HorizontalChromosomeLabels;
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+ HorizontalGeneAnnotationsTrack: typeof HorizontalGeneAnnotationsTrack;
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+ HorizontalHeatmapTrack: typeof HorizontalHeatmapTrack;
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+ HorizontalLine1DPixiTrack: typeof HorizontalLine1DPixiTrack;
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+ HorizontalMultivecTrack: typeof HorizontalMultivecTrack;
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+ HorizontalPoint1DPixiTrack: typeof HorizontalPoint1DPixiTrack;
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+ HorizontalRule: typeof HorizontalRule;
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+ HorizontalTiled1DPixiTrack: typeof HorizontalTiled1DPixiTrack;
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+ HorizontalTiledPlot: typeof HorizontalTiledPlot;
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+ HorizontalTrack: typeof HorizontalTrack;
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+ Id2DTiledPixiTrack: typeof Id2DTiledPixiTrack;
55
+ IdHorizontal1DTiledPixiTrack: typeof IdHorizontal1DTiledPixiTrack;
56
+ IdVertical1DTiledPixiTrack: typeof IdVertical1DTiledPixiTrack;
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+ LeftAxisTrack: typeof LeftAxisTrack;
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+ MapboxTilesTrack: typeof MapboxTilesTrack;
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+ MoveableTrack: typeof MoveableTrack;
60
+ OSMTileIdsTrack: typeof OSMTileIdsTrack;
61
+ OSMTilesTrack: typeof OSMTilesTrack;
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+ OverlayTrack: typeof OverlayTrack;
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+ PixiTrack: typeof PixiTrack;
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+ RasterTilesTrack: typeof RasterTilesTrack;
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+ SVGTrack: typeof SVGTrack;
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+ SquareMarkersTrack: typeof SquareMarkersTrack;
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+ Tiled1DPixiTrack: typeof Tiled1DPixiTrack;
68
+ TiledPixiTrack: typeof TiledPixiTrack;
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+ TopAxisTrack: typeof TopAxisTrack;
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+ Track: typeof Track;
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+ ValueIntervalTrack: typeof ValueIntervalTrack;
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+ VerticalRule: typeof VerticalRule;
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+ VerticalTiled1DPixiTrack: typeof VerticalTiled1DPixiTrack;
74
+ VerticalTrack: typeof VerticalTrack;
75
+ ViewportTracker2D: typeof ViewportTracker2D;
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+ ViewportTracker2DPixi: typeof ViewportTracker2DPixi;
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+ ViewportTrackerHorizontal: typeof ViewportTrackerHorizontal;
78
+ ViewportTrackerVertical: typeof ViewportTrackerVertical;
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+ };
80
+ dataFetchers: any;
81
+ factories: {
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+ ContextMenuItem: typeof ContextMenuItem;
83
+ DataFetcher: typeof DataFetcher;
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+ LruCache: typeof LruCache;
85
+ };
86
+ services: typeof services;
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+ utils: typeof utils;
88
+ configs: {
89
+ IS_TRACK_RANGE_SELECTABLE: (track: import("../types").TrackConfig) => boolean;
90
+ OPTIONS_INFO: {
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+ axisLabelFormatting: {
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+ name: string;
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+ inlineOptions: {
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+ normal: {
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+ name: string;
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+ value: string;
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+ };
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+ scientific: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ flipDiagonal: {
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+ name: string;
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+ inlineOptions: {
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+ none: {
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+ name: string;
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+ value: string;
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+ };
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+ yes: {
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+ name: string;
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+ value: string;
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+ };
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+ copy: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ heatmapValueScaling: {
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+ name: string;
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+ inlineOptions: {
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+ linear: {
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+ name: string;
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+ value: string;
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+ };
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+ log: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ valueScaling: {
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+ name: string;
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+ inlineOptions: {
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+ linear: {
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+ name: string;
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+ value: string;
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+ };
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+ log: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ extent: {
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+ name: string;
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+ inlineOptions: {
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+ full: {
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+ name: string;
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+ value: string;
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+ };
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+ upperRight: {
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+ name: string;
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+ value: string;
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+ };
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+ lowerLeft: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ labelLeftMargin: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ labelRightMargin: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ labelTopMargin: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ labelBottomMargin: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ labelShowResolution: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ labelShowAssembly: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ lineStrokeWidth: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ strokeSingleSeries: {
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+ name: string;
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+ generateOptions: (track: any) => ({
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+ name: number;
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+ value: number;
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+ } | {
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+ name: string;
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+ value: string;
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+ })[];
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+ };
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+ strokeWidthAndNone: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ trackBorderWidth: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ separatePlusMinusStrands: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ sortLargestOnTop: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ showTexts: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ staggered: {
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+ name: string;
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+ inlineOptions: {
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+ yes: {
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+ name: string;
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+ value: boolean;
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+ };
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+ no: {
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+ name: string;
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+ value: boolean;
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+ };
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+ };
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+ };
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+ minSquareSize: {
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+ name: string;
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+ inlineOptions: any;
283
+ };
284
+ pointSize: {
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+ name: string;
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+ inlineOptions: any;
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+ };
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+ pointColor: {
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+ name: string;
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+ inlineOptions: {
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+ black: {
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+ name: string;
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+ value: string;
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+ };
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+ blue: {
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+ name: string;
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+ value: string;
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+ };
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+ brown: {
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+ name: string;
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+ value: string;
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+ };
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+ cyan: {
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+ name: string;
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+ value: string;
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+ };
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+ green: {
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+ name: string;
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+ value: string;
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+ };
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+ grey: {
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+ name: string;
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+ value: string;
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+ };
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+ orange: {
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+ name: string;
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+ value: string;
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+ };
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+ purple: {
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+ name: string;
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+ value: string;
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+ };
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+ turquoise: {
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+ name: string;
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+ value: string;
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+ };
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+ red: {
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+ name: string;
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+ value: string;
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+ };
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+ white: {
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+ name: string;
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+ value: string;
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+ };
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+ };
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+ };
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+ trackBorderColor: {
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+ name: string;
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+ inlineOptions: {
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+ black: {
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+ name: string;
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+ value: string;
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+ };
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+ blue: {
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+ name: string;
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+ value: string;
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+ };
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+ brown: {
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+ name: string;
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+ value: string;
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+ };
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+ cyan: {
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+ name: string;
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+ value: string;
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+ };
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+ green: {
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+ name: string;
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+ value: string;
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+ };
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+ grey: {
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+ name: string;
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+ value: string;
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+ };
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+ orange: {
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+ name: string;
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+ value: string;
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+ };
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+ purple: {
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+ name: string;
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+ value: string;
371
+ };
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+ turquoise: {
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+ name: string;
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+ value: string;
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+ };
376
+ red: {
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+ name: string;
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+ value: string;
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+ };
380
+ white: {
381
+ name: string;
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+ value: string;
383
+ };
384
+ };
385
+ };
386
+ backgroundColor: {
387
+ name: string;
388
+ inlineOptions: {
389
+ white: {
390
+ name: string;
391
+ value: string;
392
+ };
393
+ lightGrey: {
394
+ name: string;
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+ value: string;
396
+ };
397
+ grey: {
398
+ name: string;
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+ value: string;
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+ };
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+ black: {
402
+ name: string;
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+ value: string;
404
+ };
405
+ transparent: {
406
+ name: string;
407
+ value: string;
408
+ };
409
+ };
410
+ };
411
+ colorScale: {
412
+ name: string;
413
+ inlineOptions: {
414
+ epilogos: {
415
+ name: string;
416
+ values: string[];
417
+ };
418
+ category10: {
419
+ name: string;
420
+ values: string[];
421
+ };
422
+ };
423
+ };
424
+ minusStrandColor: {
425
+ name: string;
426
+ inlineOptions: {
427
+ black: {
428
+ name: string;
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+ value: string;
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+ };
431
+ blue: {
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+ name: string;
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+ value: string;
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+ };
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+ brown: {
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+ name: string;
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+ value: string;
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+ };
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+ cyan: {
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+ name: string;
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+ value: string;
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+ };
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+ green: {
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+ name: string;
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+ value: string;
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+ };
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+ grey: {
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+ name: string;
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+ value: string;
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+ };
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+ orange: {
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+ name: string;
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+ value: string;
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+ };
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+ value: string;
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+ };
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+ value: string;
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+ };
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+ };
467
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470
+ };
471
+ };
472
+ };
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+ plusStrandColor: {
474
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+ inlineOptions: {
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477
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+ value: string;
479
+ };
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+ };
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491
+ };
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+ value: string;
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+ };
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+ value: string;
499
+ };
500
+ orange: {
501
+ name: string;
502
+ value: string;
503
+ };
504
+ purple: {
505
+ name: string;
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+ value: string;
507
+ };
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509
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510
+ value: string;
511
+ };
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+ red: {
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+ name: string;
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+ value: string;
515
+ };
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+ white: {
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+ name: string;
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+ value: string;
519
+ };
520
+ };
521
+ };
522
+ lineStrokeColor: {
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+ inlineOptions: {
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+ black: {
526
+ name: string;
527
+ value: string;
528
+ };
529
+ blue: {
530
+ name: string;
531
+ value: string;
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+ };
533
+ brown: {
534
+ name: string;
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+ value: string;
536
+ };
537
+ cyan: {
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+ name: string;
539
+ value: string;
540
+ };
541
+ green: {
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+ name: string;
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+ value: string;
544
+ };
545
+ grey: {
546
+ name: string;
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+ value: string;
548
+ };
549
+ orange: {
550
+ name: string;
551
+ value: string;
552
+ };
553
+ purple: {
554
+ name: string;
555
+ value: string;
556
+ };
557
+ turquoise: {
558
+ name: string;
559
+ value: string;
560
+ };
561
+ red: {
562
+ name: string;
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+ value: string;
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+ };
565
+ white: {
566
+ name: string;
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+ value: string;
568
+ };
569
+ };
570
+ };
571
+ projectionStrokeColor: {
572
+ name: string;
573
+ inlineOptions: {
574
+ black: {
575
+ name: string;
576
+ value: string;
577
+ };
578
+ blue: {
579
+ name: string;
580
+ value: string;
581
+ };
582
+ brown: {
583
+ name: string;
584
+ value: string;
585
+ };
586
+ cyan: {
587
+ name: string;
588
+ value: string;
589
+ };
590
+ green: {
591
+ name: string;
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+ value: string;
593
+ };
594
+ grey: {
595
+ name: string;
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+ value: string;
597
+ };
598
+ orange: {
599
+ name: string;
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+ value: string;
601
+ };
602
+ purple: {
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+ name: string;
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+ value: string;
605
+ };
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+ turquoise: {
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+ name: string;
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+ value: string;
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+ };
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+ red: {
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+ name: string;
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+ value: string;
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+ };
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+ white: {
615
+ name: string;
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+ value: string;
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+ };
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+ };
619
+ };
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+ projectionFillColor: {
621
+ name: string;
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+ inlineOptions: {
623
+ black: {
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+ name: string;
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+ value: string;
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+ };
627
+ blue: {
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+ name: string;
629
+ value: string;
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+ };
631
+ brown: {
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+ name: string;
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+ value: string;
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+ };
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+ cyan: {
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+ name: string;
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+ value: string;
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+ };
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+ green: {
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1479
+ value: string;
1480
+ };
1481
+ ends: {
1482
+ name: string;
1483
+ value: string;
1484
+ };
1485
+ };
1486
+ };
1487
+ tickFormat: {
1488
+ name: string;
1489
+ inlineOptions: {
1490
+ plain: {
1491
+ name: string;
1492
+ value: string;
1493
+ };
1494
+ si: {
1495
+ name: string;
1496
+ value: string;
1497
+ };
1498
+ };
1499
+ };
1500
+ colorEncoding: {
1501
+ name: string;
1502
+ inlineOptions: {
1503
+ none: {
1504
+ name: string;
1505
+ value: null;
1506
+ };
1507
+ itemRgb: {
1508
+ name: string;
1509
+ value: string;
1510
+ };
1511
+ };
1512
+ generateOptions: (track: any) => {
1513
+ name: any;
1514
+ value: number;
1515
+ }[];
1516
+ };
1517
+ fontIsAligned: {
1518
+ name: string;
1519
+ inlineOptions: {
1520
+ yes: {
1521
+ name: string;
1522
+ value: boolean;
1523
+ };
1524
+ no: {
1525
+ name: string;
1526
+ value: boolean;
1527
+ };
1528
+ };
1529
+ };
1530
+ axisPositionHorizontal: {
1531
+ name: string;
1532
+ inlineOptions: {
1533
+ left: {
1534
+ name: string;
1535
+ value: string;
1536
+ };
1537
+ outsideLeft: {
1538
+ name: string;
1539
+ value: string;
1540
+ };
1541
+ right: {
1542
+ name: string;
1543
+ value: string;
1544
+ };
1545
+ outsideRight: {
1546
+ name: string;
1547
+ value: string;
1548
+ };
1549
+ hidden: {
1550
+ name: string;
1551
+ value: null;
1552
+ };
1553
+ };
1554
+ };
1555
+ axisPositionVertical: {
1556
+ name: string;
1557
+ inlineOptions: {
1558
+ top: {
1559
+ name: string;
1560
+ value: string;
1561
+ };
1562
+ outsideTop: {
1563
+ name: string;
1564
+ value: string;
1565
+ };
1566
+ bottom: {
1567
+ name: string;
1568
+ value: string;
1569
+ };
1570
+ outsideBottom: {
1571
+ name: string;
1572
+ value: string;
1573
+ };
1574
+ hidden: {
1575
+ name: string;
1576
+ value: null;
1577
+ };
1578
+ };
1579
+ };
1580
+ axisMargin: {
1581
+ name: string;
1582
+ inlineOptions: any;
1583
+ };
1584
+ colorbarPosition: {
1585
+ name: string;
1586
+ inlineOptions: {
1587
+ topLeft: {
1588
+ name: string;
1589
+ value: string;
1590
+ };
1591
+ topRight: {
1592
+ name: string;
1593
+ value: string;
1594
+ };
1595
+ bottomLeft: {
1596
+ name: string;
1597
+ value: string;
1598
+ };
1599
+ bottomRight: {
1600
+ name: string;
1601
+ value: string;
1602
+ };
1603
+ hidden: {
1604
+ name: string;
1605
+ value: null;
1606
+ };
1607
+ };
1608
+ };
1609
+ colorbarBackgroundColor: {
1610
+ name: string;
1611
+ inlineOptions: {
1612
+ black: {
1613
+ name: string;
1614
+ value: string;
1615
+ };
1616
+ blue: {
1617
+ name: string;
1618
+ value: string;
1619
+ };
1620
+ brown: {
1621
+ name: string;
1622
+ value: string;
1623
+ };
1624
+ cyan: {
1625
+ name: string;
1626
+ value: string;
1627
+ };
1628
+ green: {
1629
+ name: string;
1630
+ value: string;
1631
+ };
1632
+ grey: {
1633
+ name: string;
1634
+ value: string;
1635
+ };
1636
+ orange: {
1637
+ name: string;
1638
+ value: string;
1639
+ };
1640
+ purple: {
1641
+ name: string;
1642
+ value: string;
1643
+ };
1644
+ turquoise: {
1645
+ name: string;
1646
+ value: string;
1647
+ };
1648
+ red: {
1649
+ name: string;
1650
+ value: string;
1651
+ };
1652
+ white: {
1653
+ name: string;
1654
+ value: string;
1655
+ };
1656
+ };
1657
+ };
1658
+ colorbarBackgroundOpacity: {
1659
+ name: string;
1660
+ inlineOptions: any;
1661
+ };
1662
+ colorbarLabelsPosition: {
1663
+ name: string;
1664
+ inlineOptions: {
1665
+ inside: {
1666
+ name: string;
1667
+ value: string;
1668
+ };
1669
+ outside: {
1670
+ name: string;
1671
+ value: string;
1672
+ };
1673
+ };
1674
+ };
1675
+ labelColor: {
1676
+ name: string;
1677
+ inlineOptions: {
1678
+ use_stroke: {
1679
+ name: string;
1680
+ value: string;
1681
+ };
1682
+ black: {
1683
+ name: string;
1684
+ value: string;
1685
+ };
1686
+ blue: {
1687
+ name: string;
1688
+ value: string;
1689
+ };
1690
+ brown: {
1691
+ name: string;
1692
+ value: string;
1693
+ };
1694
+ cyan: {
1695
+ name: string;
1696
+ value: string;
1697
+ };
1698
+ green: {
1699
+ name: string;
1700
+ value: string;
1701
+ };
1702
+ grey: {
1703
+ name: string;
1704
+ value: string;
1705
+ };
1706
+ orange: {
1707
+ name: string;
1708
+ value: string;
1709
+ };
1710
+ purple: {
1711
+ name: string;
1712
+ value: string;
1713
+ };
1714
+ turquoise: {
1715
+ name: string;
1716
+ value: string;
1717
+ };
1718
+ red: {
1719
+ name: string;
1720
+ value: string;
1721
+ };
1722
+ white: {
1723
+ name: string;
1724
+ value: string;
1725
+ };
1726
+ };
1727
+ };
1728
+ labelPosition: {
1729
+ name: string;
1730
+ inlineOptions: {
1731
+ l: {
1732
+ name: string;
1733
+ value: string;
1734
+ };
1735
+ r: {
1736
+ name: string;
1737
+ value: string;
1738
+ };
1739
+ ol: {
1740
+ name: string;
1741
+ value: string;
1742
+ };
1743
+ or: {
1744
+ name: string;
1745
+ value: string;
1746
+ };
1747
+ t: {
1748
+ name: string;
1749
+ value: string;
1750
+ };
1751
+ b: {
1752
+ name: string;
1753
+ value: string;
1754
+ };
1755
+ ot: {
1756
+ name: string;
1757
+ value: string;
1758
+ };
1759
+ ob: {
1760
+ name: string;
1761
+ value: string;
1762
+ };
1763
+ tl: {
1764
+ name: string;
1765
+ value: string;
1766
+ };
1767
+ tr: {
1768
+ name: string;
1769
+ value: string;
1770
+ };
1771
+ bl: {
1772
+ name: string;
1773
+ value: string;
1774
+ };
1775
+ br: {
1776
+ name: string;
1777
+ value: string;
1778
+ };
1779
+ hidden: {
1780
+ name: string;
1781
+ value: string;
1782
+ };
1783
+ };
1784
+ };
1785
+ labelTextOpacity: {
1786
+ name: string;
1787
+ inlineOptions: any;
1788
+ };
1789
+ geneAnnotationHeight: {
1790
+ name: string;
1791
+ inlineOptions: {
1792
+ 8: {
1793
+ name: string;
1794
+ value: number;
1795
+ };
1796
+ 10: {
1797
+ name: string;
1798
+ value: number;
1799
+ };
1800
+ 12: {
1801
+ name: string;
1802
+ value: number;
1803
+ };
1804
+ 16: {
1805
+ name: string;
1806
+ value: number;
1807
+ };
1808
+ };
1809
+ };
1810
+ annotationHeight: {
1811
+ name: string;
1812
+ inlineOptions: {
1813
+ 5: {
1814
+ name: string;
1815
+ value: number;
1816
+ };
1817
+ 8: {
1818
+ name: string;
1819
+ value: number;
1820
+ };
1821
+ 10: {
1822
+ name: string;
1823
+ value: number;
1824
+ };
1825
+ 12: {
1826
+ name: string;
1827
+ value: number;
1828
+ };
1829
+ 16: {
1830
+ name: string;
1831
+ value: number;
1832
+ };
1833
+ 20: {
1834
+ name: string;
1835
+ value: number;
1836
+ };
1837
+ scaled: {
1838
+ name: string;
1839
+ value: string;
1840
+ };
1841
+ };
1842
+ };
1843
+ maxAnnotationHeight: {
1844
+ name: string;
1845
+ inlineOptions: {
1846
+ 5: {
1847
+ name: string;
1848
+ value: number;
1849
+ };
1850
+ 8: {
1851
+ name: string;
1852
+ value: number;
1853
+ };
1854
+ 10: {
1855
+ name: string;
1856
+ value: number;
1857
+ };
1858
+ 12: {
1859
+ name: string;
1860
+ value: number;
1861
+ };
1862
+ 16: {
1863
+ name: string;
1864
+ value: number;
1865
+ };
1866
+ 20: {
1867
+ name: string;
1868
+ value: number;
1869
+ };
1870
+ none: {
1871
+ name: string;
1872
+ value: null;
1873
+ };
1874
+ };
1875
+ };
1876
+ annotationStyle: {
1877
+ name: string;
1878
+ inlineOptions: {
1879
+ box: {
1880
+ name: string;
1881
+ value: string;
1882
+ };
1883
+ segment: {
1884
+ name: string;
1885
+ value: string;
1886
+ };
1887
+ };
1888
+ };
1889
+ geneLabelPosition: {
1890
+ name: string;
1891
+ inlineOptions: {
1892
+ inside: {
1893
+ name: string;
1894
+ value: string;
1895
+ };
1896
+ outside: {
1897
+ name: string;
1898
+ value: string;
1899
+ };
1900
+ };
1901
+ };
1902
+ geneStrandSpacing: {
1903
+ name: string;
1904
+ inlineOptions: {
1905
+ 2: {
1906
+ name: string;
1907
+ value: number;
1908
+ };
1909
+ 4: {
1910
+ name: string;
1911
+ value: number;
1912
+ };
1913
+ 8: {
1914
+ name: string;
1915
+ value: number;
1916
+ };
1917
+ };
1918
+ };
1919
+ labelBackgroundColor: {
1920
+ name: string;
1921
+ inlineOptions: {
1922
+ black: {
1923
+ name: string;
1924
+ value: string;
1925
+ };
1926
+ blue: {
1927
+ name: string;
1928
+ value: string;
1929
+ };
1930
+ brown: {
1931
+ name: string;
1932
+ value: string;
1933
+ };
1934
+ cyan: {
1935
+ name: string;
1936
+ value: string;
1937
+ };
1938
+ green: {
1939
+ name: string;
1940
+ value: string;
1941
+ };
1942
+ grey: {
1943
+ name: string;
1944
+ value: string;
1945
+ };
1946
+ orange: {
1947
+ name: string;
1948
+ value: string;
1949
+ };
1950
+ purple: {
1951
+ name: string;
1952
+ value: string;
1953
+ };
1954
+ turquoise: {
1955
+ name: string;
1956
+ value: string;
1957
+ };
1958
+ red: {
1959
+ name: string;
1960
+ value: string;
1961
+ };
1962
+ white: {
1963
+ name: string;
1964
+ value: string;
1965
+ };
1966
+ };
1967
+ };
1968
+ labelBackgroundOpacity: {
1969
+ name: string;
1970
+ inlineOptions: any;
1971
+ };
1972
+ viewResolution: {
1973
+ name: string;
1974
+ inlineOptions: {
1975
+ high: {
1976
+ name: string;
1977
+ value: number;
1978
+ };
1979
+ medium: {
1980
+ name: string;
1981
+ value: number;
1982
+ };
1983
+ low: {
1984
+ name: string;
1985
+ value: number;
1986
+ };
1987
+ };
1988
+ };
1989
+ colorRange: {
1990
+ name: string;
1991
+ inlineOptions: {
1992
+ afmhot: {
1993
+ name: string;
1994
+ value: string[];
1995
+ };
1996
+ fall: {
1997
+ name: string;
1998
+ value: string[];
1999
+ };
2000
+ hot: {
2001
+ name: string;
2002
+ value: string[];
2003
+ };
2004
+ jet: {
2005
+ name: string;
2006
+ value: string[];
2007
+ };
2008
+ bwr: {
2009
+ name: string;
2010
+ value: string[];
2011
+ };
2012
+ cubehelix: {
2013
+ name: string;
2014
+ value: string[];
2015
+ };
2016
+ rainbow: {
2017
+ name: string;
2018
+ value: string[];
2019
+ };
2020
+ gray: {
2021
+ name: string;
2022
+ value: string[];
2023
+ };
2024
+ red: {
2025
+ name: string;
2026
+ value: string[];
2027
+ };
2028
+ green: {
2029
+ name: string;
2030
+ value: string[];
2031
+ };
2032
+ blue: {
2033
+ name: string;
2034
+ value: string[];
2035
+ };
2036
+ custard: {
2037
+ name: string;
2038
+ value: string[];
2039
+ };
2040
+ magma: {
2041
+ name: string;
2042
+ value: string[];
2043
+ };
2044
+ viridis: {
2045
+ name: string;
2046
+ value: string[];
2047
+ };
2048
+ custom: {
2049
+ name: string;
2050
+ componentPickers: {
2051
+ heatmap: typeof import("../HeatmapOptions").default;
2052
+ 'horizontal-heatmap': typeof import("../HeatmapOptions").default;
2053
+ };
2054
+ };
2055
+ };
2056
+ };
2057
+ align: {
2058
+ name: string;
2059
+ inlineOptions: {
2060
+ white: {
2061
+ name: string;
2062
+ value: string;
2063
+ };
2064
+ lightGrey: {
2065
+ name: string;
2066
+ value: string;
2067
+ };
2068
+ };
2069
+ };
2070
+ colorRangeGradient: {
2071
+ name: string;
2072
+ inlineOptions: {
2073
+ yes: {
2074
+ name: string;
2075
+ value: boolean;
2076
+ };
2077
+ no: {
2078
+ name: string;
2079
+ value: boolean;
2080
+ };
2081
+ };
2082
+ };
2083
+ dataTransform: {
2084
+ name: string;
2085
+ inlineOptions: {
2086
+ default: {
2087
+ name: string;
2088
+ value: string;
2089
+ };
2090
+ None: {
2091
+ name: string;
2092
+ value: string;
2093
+ };
2094
+ };
2095
+ generateOptions: (track: any) => {
2096
+ name: any;
2097
+ value: any;
2098
+ }[];
2099
+ };
2100
+ aggregationMode: {
2101
+ name: string;
2102
+ inlineOptions: {};
2103
+ generateOptions: (track: any) => {
2104
+ name: string;
2105
+ value: string;
2106
+ }[];
2107
+ };
2108
+ maxZoom: {
2109
+ name: string;
2110
+ inlineOptions: {
2111
+ none: {
2112
+ name: string;
2113
+ value: null;
2114
+ };
2115
+ };
2116
+ generateOptions: (track: any) => {
2117
+ name: string;
2118
+ value: string;
2119
+ }[];
2120
+ };
2121
+ valueColumn: {
2122
+ name: string;
2123
+ inlineOptions: {
2124
+ none: {
2125
+ name: string;
2126
+ value: null;
2127
+ };
2128
+ };
2129
+ generateOptions: (track: any) => {
2130
+ name: any;
2131
+ value: number;
2132
+ }[];
2133
+ };
2134
+ zeroValueColor: {
2135
+ name: string;
2136
+ inlineOptions: {
2137
+ black: {
2138
+ name: string;
2139
+ value: string;
2140
+ };
2141
+ blue: {
2142
+ name: string;
2143
+ value: string;
2144
+ };
2145
+ brown: {
2146
+ name: string;
2147
+ value: string;
2148
+ };
2149
+ cyan: {
2150
+ name: string;
2151
+ value: string;
2152
+ };
2153
+ green: {
2154
+ name: string;
2155
+ value: string;
2156
+ };
2157
+ grey: {
2158
+ name: string;
2159
+ value: string;
2160
+ };
2161
+ orange: {
2162
+ name: string;
2163
+ value: string;
2164
+ };
2165
+ purple: {
2166
+ name: string;
2167
+ value: string;
2168
+ };
2169
+ turquoise: {
2170
+ name: string;
2171
+ value: string;
2172
+ };
2173
+ red: {
2174
+ name: string;
2175
+ value: string;
2176
+ };
2177
+ white: {
2178
+ name: string;
2179
+ value: string;
2180
+ };
2181
+ };
2182
+ };
2183
+ };
2184
+ THEME_LIGHT: typeof _configs.THEME_LIGHT;
2185
+ THEME_DARK: typeof _configs.THEME_DARK;
2186
+ THEME_DEFAULT: symbol;
2187
+ GLOBALS: {
2188
+ PIXI: typeof import("pixi.js");
2189
+ };
2190
+ DATATYPE_TO_TRACK_TYPE: (orientation: any) => {
2191
+ none: any[];
2192
+ };
2193
+ HEATED_OBJECT_MAP: number[][];
2194
+ TRACKS_INFO: import("../configs/tracks-info").TrackInfo[];
2195
+ TRACKS_INFO_BY_TYPE: import("../configs/tracks-info-by-type").TracksInfoByType;
2196
+ POSITIONS_BY_DATATYPE: {};
2197
+ DEFAULT_TRACKS_FOR_DATATYPE: {
2198
+ readonly chromsizes: {
2199
+ readonly center: "2d-chromosome-grid";
2200
+ readonly top: "chromosome-labels";
2201
+ readonly left: "chromosome-labels";
2202
+ readonly bottom: "chromosome-labels";
2203
+ readonly right: "chromosome-labels";
2204
+ };
2205
+ readonly matrix: {
2206
+ readonly center: "heatmap";
2207
+ readonly top: "linear-heatmap";
2208
+ readonly left: "linear-heatmap";
2209
+ readonly right: "linear-heatmap";
2210
+ readonly bottom: "linear-heatmap";
2211
+ };
2212
+ readonly vector: {
2213
+ readonly top: "bar";
2214
+ readonly bottom: "bar";
2215
+ readonly left: "bar";
2216
+ readonly right: "bar";
2217
+ };
2218
+ readonly 'geo-json': {
2219
+ readonly center: "geo-json";
2220
+ };
2221
+ readonly 'gene-annotation': {
2222
+ readonly top: "gene-annotations";
2223
+ readonly bottom: "gene-annotations";
2224
+ readonly left: "gene-annotations";
2225
+ readonly right: "gene-annotations";
2226
+ };
2227
+ readonly bedlike: {
2228
+ readonly top: "bedlike";
2229
+ readonly bottom: "bedlike";
2230
+ readonly left: "vertical-bedlike";
2231
+ readonly right: "vertical-bedlike";
2232
+ };
2233
+ };
2234
+ AVAILABLE_TRACK_TYPES: (datatypes: any, orientation: any) => any[];
2235
+ NUM_PRECOMP_SUBSETS_PER_1D_TTILE: 8;
2236
+ NUM_PRECOMP_SUBSETS_PER_2D_TTILE: 8;
2237
+ SIZE_MODE_DEFAULT: "default";
2238
+ SIZE_MODE_BOUNDED: "bounded";
2239
+ SIZE_MODE_OVERFLOW: "overflow";
2240
+ SIZE_MODE_BOUNDED_OVERFLOW: "bounded-overflow";
2241
+ SIZE_MODE_SCROLL: "scroll";
2242
+ DEFAULT_VIEW_MARGIN: 0;
2243
+ DEFAULT_VIEW_PADDING: 5;
2244
+ DEFAULT_CONTAINER_PADDING_X: 10;
2245
+ DEFAULT_CONTAINER_PADDING_Y: 10;
2246
+ MAX_CLICK_DELAY: 300;
2247
+ MOUSE_TOOL_MOVE: "move";
2248
+ MOUSE_TOOL_SELECT: "select";
2249
+ MOUSE_TOOL_TRACK_SELECT: "track-select";
2250
+ TILE_FETCH_DEBOUNCE: 100;
2251
+ ZOOM_DEBOUNCE: 10;
2252
+ SHORT_DRAG_TIMEOUT: 110;
2253
+ LONG_DRAG_TIMEOUT: 3000;
2254
+ LOCATION_LISTENER_PREFIX: "locationListenerPrefix";
2255
+ ZOOM_TRANSITION_DURATION: 1000;
2256
+ DEFAULT_SERVER: "http://higlass.io/api/v1";
2257
+ VIEW_HEADER_MED_WIDTH_SEARCH_BAR: 400;
2258
+ VIEW_HEADER_MIN_WIDTH_SEARCH_BAR: 300;
2259
+ TRACK_LOCATIONS: readonly ["top", "left", "right", "bottom", "center", "whole", "gallery"];
2260
+ MIN_HORIZONTAL_HEIGHT: 20;
2261
+ MIN_VERTICAL_WIDTH: 20;
2262
+ };
2263
+ VERSION: string;
2264
+ };
2265
+ export default _default;
2266
+ import ChromosomeInfo from '../ChromosomeInfo';
2267
+ import SearchField from '../SearchField';
2268
+ import * as d3Array from 'd3-array';
2269
+ import * as d3Axis from 'd3-axis';
2270
+ import * as d3Brush from 'd3-brush';
2271
+ import * as d3Color from 'd3-color';
2272
+ import * as d3Drag from 'd3-drag';
2273
+ import * as d3Dsv from 'd3-dsv';
2274
+ import * as d3Format from 'd3-format';
2275
+ import * as d3Geo from 'd3-geo';
2276
+ import * as d3Queue from 'd3-queue';
2277
+ import * as d3Request from 'd3-request';
2278
+ import * as d3Scale from 'd3-scale';
2279
+ import * as d3Selection from 'd3-selection';
2280
+ import * as d3Transition from 'd3-transition';
2281
+ import * as d3Zoom from 'd3-zoom';
2282
+ import slugid from 'slugid';
2283
+ import Annotations1dTrack from '../Annotations1dTrack';
2284
+ import Annotations2dTrack from '../Annotations2dTrack';
2285
+ import ArrowheadDomainsTrack from '../ArrowheadDomainsTrack';
2286
+ import BarTrack from '../BarTrack';
2287
+ import BedLikeTrack from '../BedLikeTrack';
2288
+ import CNVIntervalTrack from '../CNVIntervalTrack';
2289
+ import Chromosome2DAnnotations from '../Chromosome2DAnnotations';
2290
+ import Chromosome2DLabels from '../Chromosome2DLabels';
2291
+ import ChromosomeGrid from '../ChromosomeGrid';
2292
+ import CombinedTrack from '../CombinedTrack';
2293
+ import CrossRule from '../CrossRule';
2294
+ import DivergentBarTrack from '../DivergentBarTrack';
2295
+ import HeatmapTiledPixiTrack from '../HeatmapTiledPixiTrack';
2296
+ import Horizontal1dHeatmapTrack from '../Horizontal1dHeatmapTrack';
2297
+ import Horizontal2DDomainsTrack from '../Horizontal2DDomainsTrack';
2298
+ import HorizontalChromosomeLabels from '../HorizontalChromosomeLabels';
2299
+ import HorizontalGeneAnnotationsTrack from '../HorizontalGeneAnnotationsTrack';
2300
+ import HorizontalHeatmapTrack from '../HorizontalHeatmapTrack';
2301
+ import HorizontalLine1DPixiTrack from '../HorizontalLine1DPixiTrack';
2302
+ import HorizontalMultivecTrack from '../HorizontalMultivecTrack';
2303
+ import HorizontalPoint1DPixiTrack from '../HorizontalPoint1DPixiTrack';
2304
+ import HorizontalRule from '../HorizontalRule';
2305
+ import HorizontalTiled1DPixiTrack from '../HorizontalTiled1DPixiTrack';
2306
+ import HorizontalTiledPlot from '../HorizontalTiledPlot';
2307
+ import HorizontalTrack from '../HorizontalTrack';
2308
+ import Id2DTiledPixiTrack from '../Id2DTiledPixiTrack';
2309
+ import IdHorizontal1DTiledPixiTrack from '../IdHorizontal1DTiledPixiTrack';
2310
+ import IdVertical1DTiledPixiTrack from '../IdVertical1DTiledPixiTrack';
2311
+ import LeftAxisTrack from '../LeftAxisTrack';
2312
+ import MapboxTilesTrack from '../MapboxTilesTrack';
2313
+ import MoveableTrack from '../MoveableTrack';
2314
+ import OSMTileIdsTrack from '../OSMTileIdsTrack';
2315
+ import OSMTilesTrack from '../OSMTilesTrack';
2316
+ import OverlayTrack from '../OverlayTrack';
2317
+ import PixiTrack from '../PixiTrack';
2318
+ import RasterTilesTrack from '../RasterTilesTrack';
2319
+ import SVGTrack from '../SVGTrack';
2320
+ import SquareMarkersTrack from '../SquareMarkersTrack';
2321
+ import Tiled1DPixiTrack from '../Tiled1DPixiTrack';
2322
+ import TiledPixiTrack from '../TiledPixiTrack';
2323
+ import TopAxisTrack from '../TopAxisTrack';
2324
+ import Track from '../Track';
2325
+ import ValueIntervalTrack from '../ValueIntervalTrack';
2326
+ import VerticalRule from '../VerticalRule';
2327
+ import VerticalTiled1DPixiTrack from '../VerticalTiled1DPixiTrack';
2328
+ import VerticalTrack from '../VerticalTrack';
2329
+ import ViewportTracker2D from '../ViewportTracker2D';
2330
+ import ViewportTracker2DPixi from '../ViewportTracker2DPixi';
2331
+ import ViewportTrackerHorizontal from '../ViewportTrackerHorizontal';
2332
+ import ViewportTrackerVertical from '../ViewportTrackerVertical';
2333
+ import ContextMenuItem from '../ContextMenuItem';
2334
+ import { DataFetcher } from '../data-fetchers';
2335
+ import LruCache from '../utils/LruCache';
2336
+ import * as services from '../services';
2337
+ import * as utils from '../utils';
2338
+ import * as _configs from '../configs';