higlass 1.13.5 → 2.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +48 -54
- package/app/globals.d.ts +1 -1
- package/app/missing-types.d.ts +4 -1
- package/app/scripts/AddTrackDialog.jsx +11 -4
- package/app/scripts/AddTrackPositionMenu.jsx +28 -7
- package/app/scripts/Annotations1dTrack.js +90 -251
- package/app/scripts/Annotations2dTrack.js +12 -7
- package/app/scripts/Autocomplete.jsx +13 -28
- package/app/scripts/AxisPixi.js +6 -10
- package/app/scripts/BarTrack.js +3 -3
- package/app/scripts/BedLikeTrack.js +556 -449
- package/app/scripts/Button.jsx +1 -1
- package/app/scripts/CNVIntervalTrack.js +1 -1
- package/app/scripts/CenterTrack.jsx +8 -7
- package/app/scripts/Chromosome2DAnnotations.js +1 -1
- package/app/scripts/Chromosome2DLabels.js +1 -1
- package/app/scripts/ChromosomeGrid.js +49 -38
- package/app/scripts/ChromosomeInfo.js +1 -1
- package/app/scripts/CombinedTrack.js +3 -1
- package/app/scripts/ConfigTrackMenu.jsx +1 -1
- package/app/scripts/ConfigViewMenu.jsx +2 -2
- package/app/scripts/ContextMenuContainer.jsx +4 -2
- package/app/scripts/ContextMenuItem.jsx +14 -2
- package/app/scripts/CrossRule.js +1 -1
- package/app/scripts/CustomTrackDialog.jsx +2 -2
- package/app/scripts/Dialog.jsx +2 -2
- package/app/scripts/DragListeningDiv.jsx +1 -1
- package/app/scripts/DraggableDiv.jsx +2 -3
- package/app/scripts/ExportLinkDialog.jsx +1 -1
- package/app/scripts/FilledLine.js +349 -0
- package/app/scripts/GalleryTracks.jsx +77 -78
- package/app/scripts/GenomePositionSearchBox.jsx +184 -482
- package/app/scripts/HeatmapOptions.jsx +4 -2
- package/app/scripts/HeatmapTiledPixiTrack.js +23 -32
- package/app/scripts/HiGlassComponent.jsx +515 -444
- package/app/scripts/HiGlassComponentContext.js +5 -0
- package/app/scripts/Horizontal1dHeatmapTrack.js +1 -1
- package/app/scripts/Horizontal2DDomainsTrack.js +1 -1
- package/app/scripts/HorizontalChromosomeLabels.js +28 -22
- package/app/scripts/HorizontalGeneAnnotationsTrack.js +1 -1
- package/app/scripts/HorizontalHeatmapTrack.js +2 -2
- package/app/scripts/HorizontalMultivecTrack.js +6 -7
- package/app/scripts/HorizontalRule.js +1 -2
- package/app/scripts/HorizontalTiled1DPixiTrack.js +4 -4
- package/app/scripts/HorizontalTiledPlot.jsx +9 -9
- package/app/scripts/LeftTrackModifier.js +4 -0
- package/app/scripts/ListWrapper.jsx +1 -2
- package/app/scripts/MapboxTilesTrack.js +1 -2
- package/app/scripts/Modal.jsx +2 -2
- package/app/scripts/MoveableTrack.jsx +10 -12
- package/app/scripts/NestedContextMenu.jsx +2 -1
- package/app/scripts/OSMTileIdsTrack.js +1 -1
- package/app/scripts/OverlayTrack.js +4 -4
- package/app/scripts/PixiTrack.js +27 -13
- package/app/scripts/PlotTypeChooser.jsx +3 -4
- package/app/scripts/SearchField.js +5 -5
- package/app/scripts/SeriesListItems.jsx +3 -4
- package/app/scripts/SeriesListMenu.jsx +95 -53
- package/app/scripts/SeriesListSubmenuMixin.jsx +2 -1
- package/app/scripts/SketchInlinePicker.jsx +2 -2
- package/app/scripts/SortableList.jsx +1 -1
- package/app/scripts/Tiled1DPixiTrack.js +4 -1
- package/app/scripts/TiledPixiTrack.js +244 -102
- package/app/scripts/TiledPlot.jsx +565 -118
- package/app/scripts/TilesetFinder.jsx +12 -4
- package/app/scripts/Track.js +1 -1
- package/app/scripts/TrackArea.jsx +4 -0
- package/app/scripts/TrackControl.jsx +2 -2
- package/app/scripts/TrackRenderer.jsx +32 -33
- package/app/scripts/ValueIntervalTrack.js +1 -1
- package/app/scripts/VerticalRule.js +2 -2
- package/app/scripts/VerticalTiledPlot.jsx +7 -7
- package/app/scripts/ViewConfigEditor.jsx +1 -1
- package/app/scripts/ViewContextMenu.jsx +53 -5
- package/app/scripts/ViewHeader.jsx +9 -9
- package/app/scripts/ViewportTracker2D.js +1 -1
- package/app/scripts/api.js +92 -12
- package/app/scripts/configs/available-track-types.js +1 -1
- package/app/scripts/configs/index.js +6 -1
- package/app/scripts/configs/positions-by-datatype.js +2 -2
- package/app/scripts/configs/primitives.js +2 -0
- package/app/scripts/configs/themes.js +0 -1
- package/app/scripts/configs/tracks-info-by-type.js +11 -8
- package/app/scripts/configs/tracks-info.js +3 -2
- package/app/scripts/d3-context-menu.js +3 -4
- package/app/scripts/data-fetchers/DataFetcher.js +35 -36
- package/app/scripts/data-fetchers/genbank-fetcher.js +13 -22
- package/app/scripts/data-fetchers/local-tile-fetcher.js +10 -8
- package/app/scripts/hglib.jsx +62 -71
- package/app/scripts/hocs/with-modal.jsx +32 -10
- package/app/scripts/hocs/with-pub-sub.js +12 -3
- package/app/scripts/hocs/with-theme.jsx +21 -14
- package/app/scripts/icons.jsx +3 -2
- package/app/scripts/mixwith.js +2 -2
- package/app/scripts/options-info.js +49 -11
- package/app/scripts/plugins/get-data-fetcher.js +2 -3
- package/app/scripts/services/chrom-info.js +32 -4
- package/app/scripts/services/element-resize-listener.js +2 -2
- package/app/scripts/services/index.js +0 -1
- package/app/scripts/services/tile-proxy.js +368 -285
- package/app/scripts/services/worker.js +31 -28
- package/app/scripts/test-helpers/index.js +2 -1
- package/app/scripts/test-helpers/test-helpers.jsx +157 -69
- package/app/scripts/types.ts +118 -47
- package/app/scripts/utils/LruCache.js +3 -2
- package/app/scripts/utils/assert.js +19 -0
- package/app/scripts/utils/background-task-scheduler.js +2 -0
- package/app/scripts/utils/color-domain-to-rgba-array.js +13 -3
- package/app/scripts/utils/copy-text-to-clipboard.js +36 -0
- package/app/scripts/utils/decompress.js +33 -0
- package/app/scripts/utils/default-tracks.js +46 -0
- package/app/scripts/utils/dict-items.js +1 -0
- package/app/scripts/utils/dict-keys.js +1 -0
- package/app/scripts/utils/dict-values.js +1 -0
- package/app/scripts/utils/expand-combined-tracks.js +11 -7
- package/app/scripts/utils/fill-in-min-widths.js +47 -21
- package/app/scripts/utils/flatten.js +0 -1
- package/app/scripts/utils/get-aggregation-function.js +1 -1
- package/app/scripts/utils/get-default-track-for-datatype.js +37 -10
- package/app/scripts/utils/get-default-tracks-for-datatype.ts +46 -0
- package/app/scripts/utils/get-higlass-components.js +27 -3
- package/app/scripts/utils/get-track-position-by-uid.js +8 -1
- package/app/scripts/utils/get-xylofon.js +12 -9
- package/app/scripts/utils/has-parent.js +5 -5
- package/app/scripts/utils/hex-string-to-int.js +1 -1
- package/app/scripts/utils/index.js +1 -0
- package/app/scripts/utils/interval-tree.js +222 -177
- package/app/scripts/utils/load-chrom-infos.js +4 -1
- package/app/scripts/utils/pixi-text-to-svg.js +5 -9
- package/app/scripts/utils/positioned-tracks-to-all-tracks.js +55 -0
- package/app/scripts/utils/range-query-2d.js +3 -3
- package/app/scripts/utils/reduce.js +12 -5
- package/app/scripts/utils/segments-to-rows.js +14 -11
- package/app/scripts/utils/svg-line.js +7 -8
- package/app/scripts/utils/type-guards.js +16 -7
- package/app/scripts/utils/visit-positioned-tracks.js +9 -4
- package/app/styles/AddTrackPositionMenu.module.scss +37 -0
- package/app/styles/HiGlass.module.scss +3 -1
- package/app/styles/d3-context-menu.css +0 -1
- package/app/styles/prism.css +1 -0
- package/dist/app/schema.json +525 -0
- package/dist/app/scripts/AddTrackDialog.d.ts +64 -0
- package/dist/app/scripts/AddTrackPositionMenu.d.ts +5 -0
- package/dist/app/scripts/Annotations1dTrack.d.ts +15 -0
- package/dist/app/scripts/Annotations2dTrack.d.ts +95 -0
- package/dist/app/scripts/ArrowheadDomainsTrack.d.ts +36 -0
- package/dist/app/scripts/Autocomplete.d.ts +102 -0
- package/dist/app/scripts/AxisPixi.d.ts +25 -0
- package/dist/app/scripts/BarTrack.d.ts +28 -0
- package/dist/app/scripts/BedLikeTrack.d.ts +84 -0
- package/dist/app/scripts/Button.d.ts +3 -0
- package/dist/app/scripts/CNVIntervalTrack.d.ts +12 -0
- package/dist/app/scripts/CenterTiledPlot.d.ts +3 -0
- package/dist/app/scripts/CenterTrack.d.ts +92 -0
- package/dist/app/scripts/Chromosome2DAnnotations.d.ts +10 -0
- package/dist/app/scripts/Chromosome2DLabels.d.ts +13 -0
- package/dist/app/scripts/ChromosomeGrid.d.ts +24 -0
- package/dist/app/scripts/ChromosomeInfo.d.ts +14 -0
- package/dist/app/scripts/CloseTrackMenu.d.ts +10 -0
- package/dist/app/scripts/CombinedTrack.d.ts +32 -0
- package/dist/app/scripts/ConfigTrackMenu.d.ts +10 -0
- package/dist/app/scripts/ConfigViewMenu.d.ts +34 -0
- package/dist/app/scripts/ConfigureSeriesMenu.d.ts +3 -0
- package/dist/app/scripts/ContextMenuContainer.d.ts +36 -0
- package/dist/app/scripts/ContextMenuItem.d.ts +34 -0
- package/dist/app/scripts/Cross.d.ts +3 -0
- package/dist/app/scripts/CrossRule.d.ts +24 -0
- package/dist/app/scripts/CustomTrackDialog.d.ts +17 -0
- package/dist/app/scripts/Dialog.d.ts +5 -0
- package/dist/app/scripts/DivergentBarTrack.d.ts +4 -0
- package/dist/app/scripts/DragListeningDiv.d.ts +32 -0
- package/dist/app/scripts/DraggableDiv.d.ts +63 -0
- package/dist/app/scripts/ExportLinkDialog.d.ts +21 -0
- package/dist/app/scripts/FilledLine.d.ts +5 -0
- package/dist/app/scripts/FixedTrack.d.ts +5 -0
- package/dist/app/scripts/GalleryTracks.d.ts +20 -0
- package/dist/app/scripts/GenomePositionSearchBox.d.ts +95 -0
- package/dist/app/scripts/HeatmapOptions.d.ts +30 -0
- package/dist/app/scripts/HeatmapTiledPixiTrack.d.ts +184 -0
- package/dist/app/scripts/HiGlassComponent.d.ts +762 -0
- package/dist/app/scripts/HiGlassComponentContext.d.ts +3 -0
- package/dist/app/scripts/HiGlassTrackComponent.d.ts +37 -0
- package/dist/app/scripts/Horizontal1dHeatmapTrack.d.ts +9 -0
- package/dist/app/scripts/Horizontal2DDomainsTrack.d.ts +21 -0
- package/dist/app/scripts/HorizontalChromosomeLabels.d.ts +47 -0
- package/dist/app/scripts/HorizontalGeneAnnotationsTrack.d.ts +25 -0
- package/dist/app/scripts/HorizontalHeatmapTrack.d.ts +12 -0
- package/dist/app/scripts/HorizontalItem.d.ts +3 -0
- package/dist/app/scripts/HorizontalLine1DPixiTrack.d.ts +23 -0
- package/dist/app/scripts/HorizontalMultivecTrack.d.ts +50 -0
- package/dist/app/scripts/HorizontalPoint1DPixiTrack.d.ts +5 -0
- package/dist/app/scripts/HorizontalRule.d.ts +22 -0
- package/dist/app/scripts/HorizontalTiled1DPixiTrack.d.ts +26 -0
- package/dist/app/scripts/HorizontalTiledPlot.d.ts +49 -0
- package/dist/app/scripts/HorizontalTrack.d.ts +6 -0
- package/dist/app/scripts/Id2DTiledPixiTrack.d.ts +10 -0
- package/dist/app/scripts/IdHorizontal1DTiledPixiTrack.d.ts +6 -0
- package/dist/app/scripts/IdVertical1DTiledPixiTrack.d.ts +7 -0
- package/dist/app/scripts/LeftAxisTrack.d.ts +9 -0
- package/dist/app/scripts/LeftTrackModifier.d.ts +29 -0
- package/dist/app/scripts/ListWrapper.d.ts +64 -0
- package/dist/app/scripts/MapboxTilesTrack.d.ts +9 -0
- package/dist/app/scripts/Modal.d.ts +5 -0
- package/dist/app/scripts/MoveableTrack.d.ts +18 -0
- package/dist/app/scripts/NestedContextMenu.d.ts +7 -0
- package/dist/app/scripts/OSMTileIdsTrack.d.ts +5 -0
- package/dist/app/scripts/OSMTilesTrack.d.ts +129 -0
- package/dist/app/scripts/OverlayTrack.d.ts +13 -0
- package/dist/app/scripts/PixiTrack.d.ts +174 -0
- package/dist/app/scripts/PlotTypeChooser.d.ts +25 -0
- package/dist/app/scripts/PopupMenu.d.ts +28 -0
- package/dist/app/scripts/RasterTilesTrack.d.ts +9 -0
- package/dist/app/scripts/RuleMixin.d.ts +2 -0
- package/dist/app/scripts/SVGTrack.d.ts +15 -0
- package/dist/app/scripts/SearchField.d.ts +13 -0
- package/dist/app/scripts/SeriesListItems.d.ts +2 -0
- package/dist/app/scripts/SeriesListMenu.d.ts +51 -0
- package/dist/app/scripts/SeriesListSubmenuMixin.d.ts +2 -0
- package/dist/app/scripts/SketchInlinePicker.d.ts +25 -0
- package/dist/app/scripts/SortableList.d.ts +22 -0
- package/dist/app/scripts/SquareMarkersTrack.d.ts +22 -0
- package/dist/app/scripts/Tiled1DPixiTrack.d.ts +60 -0
- package/dist/app/scripts/TiledPixiTrack.d.ts +369 -0
- package/dist/app/scripts/TiledPlot.d.ts +313 -0
- package/dist/app/scripts/TilesetFinder.d.ts +65 -0
- package/dist/app/scripts/TopAxisTrack.d.ts +9 -0
- package/dist/app/scripts/Track.d.ts +196 -0
- package/dist/app/scripts/TrackArea.d.ts +26 -0
- package/dist/app/scripts/TrackControl.d.ts +5 -0
- package/dist/app/scripts/TrackRenderer.d.ts +724 -0
- package/dist/app/scripts/UnknownPixiTrack.d.ts +7 -0
- package/dist/app/scripts/ValueIntervalTrack.d.ts +6 -0
- package/dist/app/scripts/VerticalItem.d.ts +3 -0
- package/dist/app/scripts/VerticalRule.d.ts +21 -0
- package/dist/app/scripts/VerticalTiled1DPixiTrack.d.ts +6 -0
- package/dist/app/scripts/VerticalTiledPlot.d.ts +50 -0
- package/dist/app/scripts/VerticalTrack.d.ts +6 -0
- package/dist/app/scripts/ViewConfigEditor.d.ts +53 -0
- package/dist/app/scripts/ViewContextMenu.d.ts +17 -0
- package/dist/app/scripts/ViewHeader.d.ts +75 -0
- package/dist/app/scripts/ViewportTracker2D.d.ts +17 -0
- package/dist/app/scripts/ViewportTracker2DPixi.d.ts +11 -0
- package/dist/app/scripts/ViewportTrackerHorizontal.d.ts +17 -0
- package/dist/app/scripts/ViewportTrackerVertical.d.ts +17 -0
- package/dist/app/scripts/api.d.ts +640 -0
- package/dist/app/scripts/configs/available-track-types.d.ts +2 -0
- package/dist/app/scripts/configs/colormaps.d.ts +2 -0
- package/dist/app/scripts/configs/datatype-to-track-type.d.ts +4 -0
- package/dist/app/scripts/configs/default-tracks-for-datatype.d.ts +38 -0
- package/dist/app/scripts/configs/dense-data-extrema-config.d.ts +2 -0
- package/dist/app/scripts/configs/globals.d.ts +5 -0
- package/dist/app/scripts/configs/index.d.ts +16 -0
- package/dist/app/scripts/configs/positions-by-datatype.d.ts +2 -0
- package/dist/app/scripts/configs/primitives.d.ts +20 -0
- package/dist/app/scripts/configs/themes.d.ts +3 -0
- package/dist/app/scripts/configs/tracks-info-by-type.d.ts +4 -0
- package/dist/app/scripts/configs/tracks-info.d.ts +24 -0
- package/dist/app/scripts/d3-context-menu.d.ts +2 -0
- package/dist/app/scripts/data-fetchers/DataFetcher.d.ts +151 -0
- package/dist/app/scripts/data-fetchers/genbank-fetcher.d.ts +86 -0
- package/dist/app/scripts/data-fetchers/index.d.ts +3 -0
- package/dist/app/scripts/data-fetchers/local-tile-fetcher.d.ts +47 -0
- package/dist/app/scripts/gosling-exports.d.ts +17 -0
- package/dist/app/scripts/hglib.d.ts +24 -0
- package/dist/app/scripts/hocs/with-modal.d.ts +19 -0
- package/dist/app/scripts/hocs/with-pub-sub.d.ts +22 -0
- package/dist/app/scripts/hocs/with-theme.d.ts +13 -0
- package/dist/app/scripts/icons.d.ts +161 -0
- package/dist/app/scripts/mixwith.d.ts +27 -0
- package/dist/app/scripts/options-info.d.ts +1355 -0
- package/dist/app/scripts/plugins/available-for-plugins.d.ts +2338 -0
- package/dist/app/scripts/plugins/get-data-fetcher.d.ts +2 -0
- package/dist/app/scripts/plugins/index.d.ts +2 -0
- package/dist/app/scripts/services/chrom-info.d.ts +10 -0
- package/dist/app/scripts/services/dom-event.d.ts +7 -0
- package/dist/app/scripts/services/element-resize-listener.d.ts +5 -0
- package/dist/app/scripts/services/index.d.ts +5 -0
- package/dist/app/scripts/services/tile-proxy.d.ts +180 -0
- package/dist/app/scripts/services/worker.d.ts +157 -0
- package/dist/app/scripts/symbol.d.ts +13 -0
- package/dist/app/scripts/test-helpers/index.d.ts +1 -0
- package/dist/app/scripts/test-helpers/test-helpers.d.ts +33 -0
- package/dist/app/scripts/track-utils.d.ts +73 -0
- package/dist/app/scripts/types.d.ts +199 -0
- package/dist/app/scripts/utils/DenseDataExtrema1D.d.ts +88 -0
- package/dist/app/scripts/utils/DenseDataExtrema2D.d.ts +97 -0
- package/dist/app/scripts/utils/LruCache.d.ts +44 -0
- package/dist/app/scripts/utils/abs-to-chr.d.ts +14 -0
- package/dist/app/scripts/utils/accessor-transposition.d.ts +14 -0
- package/dist/app/scripts/utils/add-arrays.d.ts +18 -0
- package/dist/app/scripts/utils/add-class.d.ts +8 -0
- package/dist/app/scripts/utils/add-event-listener-once.d.ts +11 -0
- package/dist/app/scripts/utils/assert.d.ts +17 -0
- package/dist/app/scripts/utils/background-task-scheduler.d.ts +47 -0
- package/dist/app/scripts/utils/base64-to-canvas.d.ts +9 -0
- package/dist/app/scripts/utils/chr-to-abs.d.ts +10 -0
- package/dist/app/scripts/utils/chrom-info-bisector.d.ts +4 -0
- package/dist/app/scripts/utils/clone-event.d.ts +12 -0
- package/dist/app/scripts/utils/color-domain-to-rgba-array.d.ts +13 -0
- package/dist/app/scripts/utils/color-to-hex.d.ts +9 -0
- package/dist/app/scripts/utils/color-to-rgba.d.ts +9 -0
- package/dist/app/scripts/utils/copy-text-to-clipboard.d.ts +2 -0
- package/dist/app/scripts/utils/data-to-genomic-loci.d.ts +11 -0
- package/dist/app/scripts/utils/debounce.d.ts +5 -0
- package/dist/app/scripts/utils/dec-to-hex-str.d.ts +8 -0
- package/dist/app/scripts/utils/decompress.d.ts +27 -0
- package/dist/app/scripts/utils/default-tracks.d.ts +3 -0
- package/dist/app/scripts/utils/dict-from-tuples.d.ts +11 -0
- package/dist/app/scripts/utils/dict-items.d.ts +18 -0
- package/dist/app/scripts/utils/dict-keys.d.ts +10 -0
- package/dist/app/scripts/utils/dict-values.d.ts +8 -0
- package/dist/app/scripts/utils/download.d.ts +7 -0
- package/dist/app/scripts/utils/expand-combined-tracks.d.ts +11 -0
- package/dist/app/scripts/utils/fake-pub-sub.d.ts +11 -0
- package/dist/app/scripts/utils/fill-in-min-widths.d.ts +44 -0
- package/dist/app/scripts/utils/flatten.d.ts +9 -0
- package/dist/app/scripts/utils/for-each.d.ts +9 -0
- package/dist/app/scripts/utils/forward-event.d.ts +7 -0
- package/dist/app/scripts/utils/genome-loci-to-pixels.d.ts +9 -0
- package/dist/app/scripts/utils/genomic-range-to-chromosome-chunks.d.ts +21 -0
- package/dist/app/scripts/utils/get-aggregation-function.d.ts +10 -0
- package/dist/app/scripts/utils/get-default-track-for-datatype.d.ts +21 -0
- package/dist/app/scripts/utils/get-default-tracks-for-datatype.d.ts +3 -0
- package/dist/app/scripts/utils/get-element-dim.d.ts +7 -0
- package/dist/app/scripts/utils/get-higlass-components.d.ts +7 -0
- package/dist/app/scripts/utils/get-track-by-uid.d.ts +7 -0
- package/dist/app/scripts/utils/get-track-conf-from-hgc.d.ts +10 -0
- package/dist/app/scripts/utils/get-track-obj-by-id.d.ts +2 -0
- package/dist/app/scripts/utils/get-track-position-by-uid.d.ts +13 -0
- package/dist/app/scripts/utils/get-xylofon.d.ts +2 -0
- package/dist/app/scripts/utils/gradient.d.ts +14 -0
- package/dist/app/scripts/utils/has-class.d.ts +8 -0
- package/dist/app/scripts/utils/has-parent.d.ts +9 -0
- package/dist/app/scripts/utils/hex-string-to-int.d.ts +14 -0
- package/dist/app/scripts/utils/index.d.ts +89 -0
- package/dist/app/scripts/utils/interval-tree.d.ts +109 -0
- package/dist/app/scripts/utils/into-the-void.d.ts +6 -0
- package/dist/app/scripts/utils/is-track-or-child-track.d.ts +7 -0
- package/dist/app/scripts/utils/is-track-range-selectable.d.ts +2 -0
- package/dist/app/scripts/utils/is-within.d.ts +12 -0
- package/dist/app/scripts/utils/lat-to-y.d.ts +9 -0
- package/dist/app/scripts/utils/lng-to-x.d.ts +8 -0
- package/dist/app/scripts/utils/load-chrom-infos.d.ts +8 -0
- package/dist/app/scripts/utils/map.d.ts +13 -0
- package/dist/app/scripts/utils/max-non-zero.d.ts +6 -0
- package/dist/app/scripts/utils/max.d.ts +10 -0
- package/dist/app/scripts/utils/min-non-zero.d.ts +6 -0
- package/dist/app/scripts/utils/min.d.ts +10 -0
- package/dist/app/scripts/utils/mod.d.ts +9 -0
- package/dist/app/scripts/utils/ndarray-assign.d.ts +2 -0
- package/dist/app/scripts/utils/ndarray-flatten.d.ts +2 -0
- package/dist/app/scripts/utils/ndarray-to-list.d.ts +2 -0
- package/dist/app/scripts/utils/numericify-version.d.ts +6 -0
- package/dist/app/scripts/utils/obj-vals.d.ts +8 -0
- package/dist/app/scripts/utils/or.d.ts +8 -0
- package/dist/app/scripts/utils/parse-chromsizes-rows.d.ts +34 -0
- package/dist/app/scripts/utils/pixi-text-to-svg.d.ts +2 -0
- package/dist/app/scripts/utils/positioned-tracks-to-all-tracks.d.ts +26 -0
- package/dist/app/scripts/utils/q.d.ts +18 -0
- package/dist/app/scripts/utils/rad-to-deg.d.ts +7 -0
- package/dist/app/scripts/utils/range-query-2d.d.ts +17 -0
- package/dist/app/scripts/utils/reduce.d.ts +14 -0
- package/dist/app/scripts/utils/rel-to-abs-chrom-pos.d.ts +10 -0
- package/dist/app/scripts/utils/remove-class.d.ts +7 -0
- package/dist/app/scripts/utils/reset-d3-brush-style.d.ts +10 -0
- package/dist/app/scripts/utils/rgb-to-hex.d.ts +8 -0
- package/dist/app/scripts/utils/scales-center-and-k.d.ts +12 -0
- package/dist/app/scripts/utils/scales-to-genome-loci.d.ts +3 -0
- package/dist/app/scripts/utils/segments-to-rows.d.ts +15 -0
- package/dist/app/scripts/utils/selected-items-to-cum-weights.d.ts +12 -0
- package/dist/app/scripts/utils/selected-items-to-size.d.ts +13 -0
- package/dist/app/scripts/utils/show-mouse-position.d.ts +54 -0
- package/dist/app/scripts/utils/some.d.ts +10 -0
- package/dist/app/scripts/utils/sum.d.ts +8 -0
- package/dist/app/scripts/utils/svg-line.d.ts +2 -0
- package/dist/app/scripts/utils/throttle-and-debounce.d.ts +33 -0
- package/dist/app/scripts/utils/tile-to-canvas.d.ts +9 -0
- package/dist/app/scripts/utils/timeout.d.ts +3 -0
- package/dist/app/scripts/utils/to-void.d.ts +3 -0
- package/dist/app/scripts/utils/total-track-pixel-height.d.ts +27 -0
- package/dist/app/scripts/utils/trim-trailing-slash.d.ts +7 -0
- package/dist/app/scripts/utils/type-guards.d.ts +36 -0
- package/dist/app/scripts/utils/value-to-color.d.ts +12 -0
- package/dist/app/scripts/utils/visit-positioned-tracks.d.ts +18 -0
- package/dist/app/scripts/utils/visit-tracks.d.ts +9 -0
- package/dist/esm.html +1 -3
- package/dist/hglib.js +86315 -100592
- package/dist/hglib.min.js +123 -131
- package/dist/higlass.mjs +88861 -103138
- package/dist/index.html +1 -3
- package/dist/package.json +134 -0
- package/package.json +25 -27
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@@ -1,9 +1,7 @@
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// @ts-nocheck
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import React from 'react';
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import { findDOMNode } from 'react-dom';
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import scrollIntoView from 'dom-scroll-into-view';
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import PropTypes from 'prop-types';
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import React from 'react';
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const _debugStates = [];
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@@ -102,14 +100,12 @@ class Autocomplete extends React.Component {
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};
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}
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// eslint-disable-next-line camelcase
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UNSAFE_componentWillMount() {
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this._ignoreBlur = false;
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this._performAutoCompleteOnUpdate = false;
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this._performAutoCompleteOnKeyUp = false;
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}
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UNSAFE_componentWillReceiveProps(nextProps) {
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this._performAutoCompleteOnUpdate = true;
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// If `items` has changed we want to reset `highlightedIndex`
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maybeScrollItemIntoView() {
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if (this.state.isOpen === true && this.state.highlightedIndex !== null) {
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// eslint-disable-next-line react/no-string-refs
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const itemNode = this.refs[`item-${this.state.highlightedIndex}`];
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const menuNode = this.refs.menu;
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if (itemNode) {
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scrollIntoView(findDOMNode(itemNode), findDOMNode(menuNode), {
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onlyScrollIfNeeded: true,
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});
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}
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itemNode?.scrollIntoView({ block: 'nearest', behavior: 'smooth' });
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}
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}
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@@ -217,9 +206,9 @@ class Autocomplete extends React.Component {
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const node = this.inputEl;
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const rect = node.getBoundingClientRect();
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const computedStyle = global.window.getComputedStyle(node);
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const marginBottom = parseInt(computedStyle.marginBottom, 10) || 0;
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const marginLeft = parseInt(computedStyle.marginLeft, 10) || 0;
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const marginRight = parseInt(computedStyle.marginRight, 10) || 0;
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const marginBottom = Number.parseInt(computedStyle.marginBottom, 10) || 0;
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const marginLeft = Number.parseInt(computedStyle.marginLeft, 10) || 0;
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const marginRight = Number.parseInt(computedStyle.marginRight, 10) || 0;
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this.setState({
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menuTop: rect.bottom + marginBottom,
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menuLeft: rect.left + marginLeft,
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autoComplete="off"
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onBlur={this.composeEventHandlers(
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this.handleInputBlur.bind(this),
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inputProps.onBlur
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inputProps.onBlur?.bind(this),
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)}
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onChange={this.handleChange.bind(this)}
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onClick={this.composeEventHandlers(
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this.handleInputClick.bind(this),
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inputProps.onClick
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inputProps.onClick?.bind(this),
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)}
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onFocus={this.composeEventHandlers(
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this.handleInputFocus.bind(this),
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inputProps.onFocus
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inputProps.onFocus?.bind(this),
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)}
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onKeyDown={this.composeEventHandlers(
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this.handleKeyDown.bind(this),
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inputProps.onKeyDown
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inputProps.onKeyDown?.bind(this),
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)}
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onKeyUp={this.composeEventHandlers(
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this.handleKeyUp.bind(this),
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inputProps.onKeyUp
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inputProps.onKeyUp?.bind(this),
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)}
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//
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// biome-ignore lint/a11y/useAriaPropsForRole:
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role="combobox"
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value={this.props.value}
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/>
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onChange() {},
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onSelect() {},
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renderMenu(items, value, style) {
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return
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/* eslint-disable react/no-this-in-sfc */
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<div style={{ ...style, ...this.menuStyle }}>{items}</div>
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/* eslint-enable react/no-this-in-sfc */
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);
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return <div style={{ ...style, ...this.menuStyle }}>{items}</div>;
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},
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shouldItemRender() {
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return true;
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package/app/scripts/AxisPixi.js
CHANGED
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graphics.moveTo(-TICK_MARGIN, valueScale(tick));
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graphics.lineTo(-(TICK_MARGIN + TICK_LENGTH), valueScale(tick));
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if (this.track
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if (this.track?.flipText) {
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this.axisTexts[i].scale.x = -1;
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}
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}
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graphics.moveTo(TICK_MARGIN, valueScale(tick));
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graphics.lineTo(TICK_MARGIN + TICK_LENGTH, valueScale(tick));
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this.axisTexts[i].scale.x = -1;
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}
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}
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@@ -228,7 +228,7 @@ class AxisPixi {
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let stroke = 'black';
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stroke = this.track.options.lineStrokeColor;
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}
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// TODO: On the canvas, there is no vertical line beside the scale,
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@@ -254,7 +254,7 @@ class AxisPixi {
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// factor out the styling for axis lines
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let stroke = 'black';
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if (this.track
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if (this.track?.options.lineStrokeColor) {
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stroke = this.track.options.lineStrokeColor;
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}
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@@ -306,9 +306,7 @@ class AxisPixi {
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tickLine.setAttribute(
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'd',
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`M${+TICK_MARGIN},${valueScale(tick)} L${+(
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TICK_MARGIN + TICK_LENGTH
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)},${valueScale(tick)}`,
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`M${+TICK_MARGIN},${valueScale(tick)} L${+(TICK_MARGIN + TICK_LENGTH)},${valueScale(tick)}`,
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);
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const g = document.createElement('g');
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@@ -352,9 +350,7 @@ class AxisPixi {
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tickLine.setAttribute(
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'd',
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`M${-TICK_MARGIN},${valueScale(tick)} L${-(
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TICK_MARGIN + TICK_LENGTH
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)},${valueScale(tick)}`,
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`M${-TICK_MARGIN},${valueScale(tick)} L${-(TICK_MARGIN + TICK_LENGTH)},${valueScale(tick)}`,
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);
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const g = document.createElement('g');
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package/app/scripts/BarTrack.js
CHANGED
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@@ -20,7 +20,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
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this.pMain.addChild(this.zeroLine);
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this.valueScaleTransform = zoomIdentity;
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if (this.options
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if (this.options?.colorRange) {
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if (this.options.colorRangeGradient) {
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this.setColorGradient(this.options.colorRange);
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} else {
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@@ -226,7 +226,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
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}
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rerender(options, force) {
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if (options
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if (options?.colorRange) {
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if (options.colorRangeGradient) {
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this.setColorGradient(options.colorRange);
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} else {
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@@ -430,7 +430,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
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if (this.options.zeroLine) this.drawZeroLineSvg(output);
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this.visibleAndFetchedTiles()
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.filter((tile) => tile.svgData
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.filter((tile) => tile.svgData?.barXValues)
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.forEach((tile) => {
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// const [xScale, xPos] = this.getXScaleAndOffset(tile.drawnAtScale);
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const data = tile.svgData;
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