higlass 1.13.5 → 2.0.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (392) hide show
  1. package/README.md +48 -54
  2. package/app/globals.d.ts +1 -1
  3. package/app/missing-types.d.ts +4 -1
  4. package/app/scripts/AddTrackDialog.jsx +11 -4
  5. package/app/scripts/AddTrackPositionMenu.jsx +28 -7
  6. package/app/scripts/Annotations1dTrack.js +90 -251
  7. package/app/scripts/Annotations2dTrack.js +12 -7
  8. package/app/scripts/Autocomplete.jsx +13 -28
  9. package/app/scripts/AxisPixi.js +6 -10
  10. package/app/scripts/BarTrack.js +3 -3
  11. package/app/scripts/BedLikeTrack.js +556 -449
  12. package/app/scripts/Button.jsx +1 -1
  13. package/app/scripts/CNVIntervalTrack.js +1 -1
  14. package/app/scripts/CenterTrack.jsx +8 -7
  15. package/app/scripts/Chromosome2DAnnotations.js +1 -1
  16. package/app/scripts/Chromosome2DLabels.js +1 -1
  17. package/app/scripts/ChromosomeGrid.js +49 -38
  18. package/app/scripts/ChromosomeInfo.js +1 -1
  19. package/app/scripts/CombinedTrack.js +3 -1
  20. package/app/scripts/ConfigTrackMenu.jsx +1 -1
  21. package/app/scripts/ConfigViewMenu.jsx +2 -2
  22. package/app/scripts/ContextMenuContainer.jsx +4 -2
  23. package/app/scripts/ContextMenuItem.jsx +14 -2
  24. package/app/scripts/CrossRule.js +1 -1
  25. package/app/scripts/CustomTrackDialog.jsx +2 -2
  26. package/app/scripts/Dialog.jsx +2 -2
  27. package/app/scripts/DragListeningDiv.jsx +1 -1
  28. package/app/scripts/DraggableDiv.jsx +2 -3
  29. package/app/scripts/ExportLinkDialog.jsx +1 -1
  30. package/app/scripts/FilledLine.js +349 -0
  31. package/app/scripts/GalleryTracks.jsx +77 -78
  32. package/app/scripts/GenomePositionSearchBox.jsx +184 -482
  33. package/app/scripts/HeatmapOptions.jsx +4 -2
  34. package/app/scripts/HeatmapTiledPixiTrack.js +23 -32
  35. package/app/scripts/HiGlassComponent.jsx +515 -444
  36. package/app/scripts/HiGlassComponentContext.js +5 -0
  37. package/app/scripts/Horizontal1dHeatmapTrack.js +1 -1
  38. package/app/scripts/Horizontal2DDomainsTrack.js +1 -1
  39. package/app/scripts/HorizontalChromosomeLabels.js +28 -22
  40. package/app/scripts/HorizontalGeneAnnotationsTrack.js +1 -1
  41. package/app/scripts/HorizontalHeatmapTrack.js +2 -2
  42. package/app/scripts/HorizontalMultivecTrack.js +6 -7
  43. package/app/scripts/HorizontalRule.js +1 -2
  44. package/app/scripts/HorizontalTiled1DPixiTrack.js +4 -4
  45. package/app/scripts/HorizontalTiledPlot.jsx +9 -9
  46. package/app/scripts/LeftTrackModifier.js +4 -0
  47. package/app/scripts/ListWrapper.jsx +1 -2
  48. package/app/scripts/MapboxTilesTrack.js +1 -2
  49. package/app/scripts/Modal.jsx +2 -2
  50. package/app/scripts/MoveableTrack.jsx +10 -12
  51. package/app/scripts/NestedContextMenu.jsx +2 -1
  52. package/app/scripts/OSMTileIdsTrack.js +1 -1
  53. package/app/scripts/OverlayTrack.js +4 -4
  54. package/app/scripts/PixiTrack.js +27 -13
  55. package/app/scripts/PlotTypeChooser.jsx +3 -4
  56. package/app/scripts/SearchField.js +5 -5
  57. package/app/scripts/SeriesListItems.jsx +3 -4
  58. package/app/scripts/SeriesListMenu.jsx +95 -53
  59. package/app/scripts/SeriesListSubmenuMixin.jsx +2 -1
  60. package/app/scripts/SketchInlinePicker.jsx +2 -2
  61. package/app/scripts/SortableList.jsx +1 -1
  62. package/app/scripts/Tiled1DPixiTrack.js +4 -1
  63. package/app/scripts/TiledPixiTrack.js +244 -102
  64. package/app/scripts/TiledPlot.jsx +565 -118
  65. package/app/scripts/TilesetFinder.jsx +12 -4
  66. package/app/scripts/Track.js +1 -1
  67. package/app/scripts/TrackArea.jsx +4 -0
  68. package/app/scripts/TrackControl.jsx +2 -2
  69. package/app/scripts/TrackRenderer.jsx +32 -33
  70. package/app/scripts/ValueIntervalTrack.js +1 -1
  71. package/app/scripts/VerticalRule.js +2 -2
  72. package/app/scripts/VerticalTiledPlot.jsx +7 -7
  73. package/app/scripts/ViewConfigEditor.jsx +1 -1
  74. package/app/scripts/ViewContextMenu.jsx +53 -5
  75. package/app/scripts/ViewHeader.jsx +9 -9
  76. package/app/scripts/ViewportTracker2D.js +1 -1
  77. package/app/scripts/api.js +92 -12
  78. package/app/scripts/configs/available-track-types.js +1 -1
  79. package/app/scripts/configs/index.js +6 -1
  80. package/app/scripts/configs/positions-by-datatype.js +2 -2
  81. package/app/scripts/configs/primitives.js +2 -0
  82. package/app/scripts/configs/themes.js +0 -1
  83. package/app/scripts/configs/tracks-info-by-type.js +11 -8
  84. package/app/scripts/configs/tracks-info.js +3 -2
  85. package/app/scripts/d3-context-menu.js +3 -4
  86. package/app/scripts/data-fetchers/DataFetcher.js +35 -36
  87. package/app/scripts/data-fetchers/genbank-fetcher.js +13 -22
  88. package/app/scripts/data-fetchers/local-tile-fetcher.js +10 -8
  89. package/app/scripts/hglib.jsx +62 -71
  90. package/app/scripts/hocs/with-modal.jsx +32 -10
  91. package/app/scripts/hocs/with-pub-sub.js +12 -3
  92. package/app/scripts/hocs/with-theme.jsx +21 -14
  93. package/app/scripts/icons.jsx +3 -2
  94. package/app/scripts/mixwith.js +2 -2
  95. package/app/scripts/options-info.js +49 -11
  96. package/app/scripts/plugins/get-data-fetcher.js +2 -3
  97. package/app/scripts/services/chrom-info.js +32 -4
  98. package/app/scripts/services/element-resize-listener.js +2 -2
  99. package/app/scripts/services/index.js +0 -1
  100. package/app/scripts/services/tile-proxy.js +368 -285
  101. package/app/scripts/services/worker.js +31 -28
  102. package/app/scripts/test-helpers/index.js +2 -1
  103. package/app/scripts/test-helpers/test-helpers.jsx +157 -69
  104. package/app/scripts/types.ts +118 -47
  105. package/app/scripts/utils/LruCache.js +3 -2
  106. package/app/scripts/utils/assert.js +19 -0
  107. package/app/scripts/utils/background-task-scheduler.js +2 -0
  108. package/app/scripts/utils/color-domain-to-rgba-array.js +13 -3
  109. package/app/scripts/utils/copy-text-to-clipboard.js +36 -0
  110. package/app/scripts/utils/decompress.js +33 -0
  111. package/app/scripts/utils/default-tracks.js +46 -0
  112. package/app/scripts/utils/dict-items.js +1 -0
  113. package/app/scripts/utils/dict-keys.js +1 -0
  114. package/app/scripts/utils/dict-values.js +1 -0
  115. package/app/scripts/utils/expand-combined-tracks.js +11 -7
  116. package/app/scripts/utils/fill-in-min-widths.js +47 -21
  117. package/app/scripts/utils/flatten.js +0 -1
  118. package/app/scripts/utils/get-aggregation-function.js +1 -1
  119. package/app/scripts/utils/get-default-track-for-datatype.js +37 -10
  120. package/app/scripts/utils/get-default-tracks-for-datatype.ts +46 -0
  121. package/app/scripts/utils/get-higlass-components.js +27 -3
  122. package/app/scripts/utils/get-track-position-by-uid.js +8 -1
  123. package/app/scripts/utils/get-xylofon.js +12 -9
  124. package/app/scripts/utils/has-parent.js +5 -5
  125. package/app/scripts/utils/hex-string-to-int.js +1 -1
  126. package/app/scripts/utils/index.js +1 -0
  127. package/app/scripts/utils/interval-tree.js +222 -177
  128. package/app/scripts/utils/load-chrom-infos.js +4 -1
  129. package/app/scripts/utils/pixi-text-to-svg.js +5 -9
  130. package/app/scripts/utils/positioned-tracks-to-all-tracks.js +55 -0
  131. package/app/scripts/utils/range-query-2d.js +3 -3
  132. package/app/scripts/utils/reduce.js +12 -5
  133. package/app/scripts/utils/segments-to-rows.js +14 -11
  134. package/app/scripts/utils/svg-line.js +7 -8
  135. package/app/scripts/utils/type-guards.js +16 -7
  136. package/app/scripts/utils/visit-positioned-tracks.js +9 -4
  137. package/app/styles/AddTrackPositionMenu.module.scss +37 -0
  138. package/app/styles/HiGlass.module.scss +3 -1
  139. package/app/styles/d3-context-menu.css +0 -1
  140. package/app/styles/prism.css +1 -0
  141. package/dist/app/schema.json +525 -0
  142. package/dist/app/scripts/AddTrackDialog.d.ts +64 -0
  143. package/dist/app/scripts/AddTrackPositionMenu.d.ts +5 -0
  144. package/dist/app/scripts/Annotations1dTrack.d.ts +15 -0
  145. package/dist/app/scripts/Annotations2dTrack.d.ts +95 -0
  146. package/dist/app/scripts/ArrowheadDomainsTrack.d.ts +36 -0
  147. package/dist/app/scripts/Autocomplete.d.ts +102 -0
  148. package/dist/app/scripts/AxisPixi.d.ts +25 -0
  149. package/dist/app/scripts/BarTrack.d.ts +28 -0
  150. package/dist/app/scripts/BedLikeTrack.d.ts +84 -0
  151. package/dist/app/scripts/Button.d.ts +3 -0
  152. package/dist/app/scripts/CNVIntervalTrack.d.ts +12 -0
  153. package/dist/app/scripts/CenterTiledPlot.d.ts +3 -0
  154. package/dist/app/scripts/CenterTrack.d.ts +92 -0
  155. package/dist/app/scripts/Chromosome2DAnnotations.d.ts +10 -0
  156. package/dist/app/scripts/Chromosome2DLabels.d.ts +13 -0
  157. package/dist/app/scripts/ChromosomeGrid.d.ts +24 -0
  158. package/dist/app/scripts/ChromosomeInfo.d.ts +14 -0
  159. package/dist/app/scripts/CloseTrackMenu.d.ts +10 -0
  160. package/dist/app/scripts/CombinedTrack.d.ts +32 -0
  161. package/dist/app/scripts/ConfigTrackMenu.d.ts +10 -0
  162. package/dist/app/scripts/ConfigViewMenu.d.ts +34 -0
  163. package/dist/app/scripts/ConfigureSeriesMenu.d.ts +3 -0
  164. package/dist/app/scripts/ContextMenuContainer.d.ts +36 -0
  165. package/dist/app/scripts/ContextMenuItem.d.ts +34 -0
  166. package/dist/app/scripts/Cross.d.ts +3 -0
  167. package/dist/app/scripts/CrossRule.d.ts +24 -0
  168. package/dist/app/scripts/CustomTrackDialog.d.ts +17 -0
  169. package/dist/app/scripts/Dialog.d.ts +5 -0
  170. package/dist/app/scripts/DivergentBarTrack.d.ts +4 -0
  171. package/dist/app/scripts/DragListeningDiv.d.ts +32 -0
  172. package/dist/app/scripts/DraggableDiv.d.ts +63 -0
  173. package/dist/app/scripts/ExportLinkDialog.d.ts +21 -0
  174. package/dist/app/scripts/FilledLine.d.ts +5 -0
  175. package/dist/app/scripts/FixedTrack.d.ts +5 -0
  176. package/dist/app/scripts/GalleryTracks.d.ts +20 -0
  177. package/dist/app/scripts/GenomePositionSearchBox.d.ts +95 -0
  178. package/dist/app/scripts/HeatmapOptions.d.ts +30 -0
  179. package/dist/app/scripts/HeatmapTiledPixiTrack.d.ts +184 -0
  180. package/dist/app/scripts/HiGlassComponent.d.ts +762 -0
  181. package/dist/app/scripts/HiGlassComponentContext.d.ts +3 -0
  182. package/dist/app/scripts/HiGlassTrackComponent.d.ts +37 -0
  183. package/dist/app/scripts/Horizontal1dHeatmapTrack.d.ts +9 -0
  184. package/dist/app/scripts/Horizontal2DDomainsTrack.d.ts +21 -0
  185. package/dist/app/scripts/HorizontalChromosomeLabels.d.ts +47 -0
  186. package/dist/app/scripts/HorizontalGeneAnnotationsTrack.d.ts +25 -0
  187. package/dist/app/scripts/HorizontalHeatmapTrack.d.ts +12 -0
  188. package/dist/app/scripts/HorizontalItem.d.ts +3 -0
  189. package/dist/app/scripts/HorizontalLine1DPixiTrack.d.ts +23 -0
  190. package/dist/app/scripts/HorizontalMultivecTrack.d.ts +50 -0
  191. package/dist/app/scripts/HorizontalPoint1DPixiTrack.d.ts +5 -0
  192. package/dist/app/scripts/HorizontalRule.d.ts +22 -0
  193. package/dist/app/scripts/HorizontalTiled1DPixiTrack.d.ts +26 -0
  194. package/dist/app/scripts/HorizontalTiledPlot.d.ts +49 -0
  195. package/dist/app/scripts/HorizontalTrack.d.ts +6 -0
  196. package/dist/app/scripts/Id2DTiledPixiTrack.d.ts +10 -0
  197. package/dist/app/scripts/IdHorizontal1DTiledPixiTrack.d.ts +6 -0
  198. package/dist/app/scripts/IdVertical1DTiledPixiTrack.d.ts +7 -0
  199. package/dist/app/scripts/LeftAxisTrack.d.ts +9 -0
  200. package/dist/app/scripts/LeftTrackModifier.d.ts +29 -0
  201. package/dist/app/scripts/ListWrapper.d.ts +64 -0
  202. package/dist/app/scripts/MapboxTilesTrack.d.ts +9 -0
  203. package/dist/app/scripts/Modal.d.ts +5 -0
  204. package/dist/app/scripts/MoveableTrack.d.ts +18 -0
  205. package/dist/app/scripts/NestedContextMenu.d.ts +7 -0
  206. package/dist/app/scripts/OSMTileIdsTrack.d.ts +5 -0
  207. package/dist/app/scripts/OSMTilesTrack.d.ts +129 -0
  208. package/dist/app/scripts/OverlayTrack.d.ts +13 -0
  209. package/dist/app/scripts/PixiTrack.d.ts +174 -0
  210. package/dist/app/scripts/PlotTypeChooser.d.ts +25 -0
  211. package/dist/app/scripts/PopupMenu.d.ts +28 -0
  212. package/dist/app/scripts/RasterTilesTrack.d.ts +9 -0
  213. package/dist/app/scripts/RuleMixin.d.ts +2 -0
  214. package/dist/app/scripts/SVGTrack.d.ts +15 -0
  215. package/dist/app/scripts/SearchField.d.ts +13 -0
  216. package/dist/app/scripts/SeriesListItems.d.ts +2 -0
  217. package/dist/app/scripts/SeriesListMenu.d.ts +51 -0
  218. package/dist/app/scripts/SeriesListSubmenuMixin.d.ts +2 -0
  219. package/dist/app/scripts/SketchInlinePicker.d.ts +25 -0
  220. package/dist/app/scripts/SortableList.d.ts +22 -0
  221. package/dist/app/scripts/SquareMarkersTrack.d.ts +22 -0
  222. package/dist/app/scripts/Tiled1DPixiTrack.d.ts +60 -0
  223. package/dist/app/scripts/TiledPixiTrack.d.ts +369 -0
  224. package/dist/app/scripts/TiledPlot.d.ts +313 -0
  225. package/dist/app/scripts/TilesetFinder.d.ts +65 -0
  226. package/dist/app/scripts/TopAxisTrack.d.ts +9 -0
  227. package/dist/app/scripts/Track.d.ts +196 -0
  228. package/dist/app/scripts/TrackArea.d.ts +26 -0
  229. package/dist/app/scripts/TrackControl.d.ts +5 -0
  230. package/dist/app/scripts/TrackRenderer.d.ts +724 -0
  231. package/dist/app/scripts/UnknownPixiTrack.d.ts +7 -0
  232. package/dist/app/scripts/ValueIntervalTrack.d.ts +6 -0
  233. package/dist/app/scripts/VerticalItem.d.ts +3 -0
  234. package/dist/app/scripts/VerticalRule.d.ts +21 -0
  235. package/dist/app/scripts/VerticalTiled1DPixiTrack.d.ts +6 -0
  236. package/dist/app/scripts/VerticalTiledPlot.d.ts +50 -0
  237. package/dist/app/scripts/VerticalTrack.d.ts +6 -0
  238. package/dist/app/scripts/ViewConfigEditor.d.ts +53 -0
  239. package/dist/app/scripts/ViewContextMenu.d.ts +17 -0
  240. package/dist/app/scripts/ViewHeader.d.ts +75 -0
  241. package/dist/app/scripts/ViewportTracker2D.d.ts +17 -0
  242. package/dist/app/scripts/ViewportTracker2DPixi.d.ts +11 -0
  243. package/dist/app/scripts/ViewportTrackerHorizontal.d.ts +17 -0
  244. package/dist/app/scripts/ViewportTrackerVertical.d.ts +17 -0
  245. package/dist/app/scripts/api.d.ts +640 -0
  246. package/dist/app/scripts/configs/available-track-types.d.ts +2 -0
  247. package/dist/app/scripts/configs/colormaps.d.ts +2 -0
  248. package/dist/app/scripts/configs/datatype-to-track-type.d.ts +4 -0
  249. package/dist/app/scripts/configs/default-tracks-for-datatype.d.ts +38 -0
  250. package/dist/app/scripts/configs/dense-data-extrema-config.d.ts +2 -0
  251. package/dist/app/scripts/configs/globals.d.ts +5 -0
  252. package/dist/app/scripts/configs/index.d.ts +16 -0
  253. package/dist/app/scripts/configs/positions-by-datatype.d.ts +2 -0
  254. package/dist/app/scripts/configs/primitives.d.ts +20 -0
  255. package/dist/app/scripts/configs/themes.d.ts +3 -0
  256. package/dist/app/scripts/configs/tracks-info-by-type.d.ts +4 -0
  257. package/dist/app/scripts/configs/tracks-info.d.ts +24 -0
  258. package/dist/app/scripts/d3-context-menu.d.ts +2 -0
  259. package/dist/app/scripts/data-fetchers/DataFetcher.d.ts +151 -0
  260. package/dist/app/scripts/data-fetchers/genbank-fetcher.d.ts +86 -0
  261. package/dist/app/scripts/data-fetchers/index.d.ts +3 -0
  262. package/dist/app/scripts/data-fetchers/local-tile-fetcher.d.ts +47 -0
  263. package/dist/app/scripts/gosling-exports.d.ts +17 -0
  264. package/dist/app/scripts/hglib.d.ts +24 -0
  265. package/dist/app/scripts/hocs/with-modal.d.ts +19 -0
  266. package/dist/app/scripts/hocs/with-pub-sub.d.ts +22 -0
  267. package/dist/app/scripts/hocs/with-theme.d.ts +13 -0
  268. package/dist/app/scripts/icons.d.ts +161 -0
  269. package/dist/app/scripts/mixwith.d.ts +27 -0
  270. package/dist/app/scripts/options-info.d.ts +1355 -0
  271. package/dist/app/scripts/plugins/available-for-plugins.d.ts +2338 -0
  272. package/dist/app/scripts/plugins/get-data-fetcher.d.ts +2 -0
  273. package/dist/app/scripts/plugins/index.d.ts +2 -0
  274. package/dist/app/scripts/services/chrom-info.d.ts +10 -0
  275. package/dist/app/scripts/services/dom-event.d.ts +7 -0
  276. package/dist/app/scripts/services/element-resize-listener.d.ts +5 -0
  277. package/dist/app/scripts/services/index.d.ts +5 -0
  278. package/dist/app/scripts/services/tile-proxy.d.ts +180 -0
  279. package/dist/app/scripts/services/worker.d.ts +157 -0
  280. package/dist/app/scripts/symbol.d.ts +13 -0
  281. package/dist/app/scripts/test-helpers/index.d.ts +1 -0
  282. package/dist/app/scripts/test-helpers/test-helpers.d.ts +33 -0
  283. package/dist/app/scripts/track-utils.d.ts +73 -0
  284. package/dist/app/scripts/types.d.ts +199 -0
  285. package/dist/app/scripts/utils/DenseDataExtrema1D.d.ts +88 -0
  286. package/dist/app/scripts/utils/DenseDataExtrema2D.d.ts +97 -0
  287. package/dist/app/scripts/utils/LruCache.d.ts +44 -0
  288. package/dist/app/scripts/utils/abs-to-chr.d.ts +14 -0
  289. package/dist/app/scripts/utils/accessor-transposition.d.ts +14 -0
  290. package/dist/app/scripts/utils/add-arrays.d.ts +18 -0
  291. package/dist/app/scripts/utils/add-class.d.ts +8 -0
  292. package/dist/app/scripts/utils/add-event-listener-once.d.ts +11 -0
  293. package/dist/app/scripts/utils/assert.d.ts +17 -0
  294. package/dist/app/scripts/utils/background-task-scheduler.d.ts +47 -0
  295. package/dist/app/scripts/utils/base64-to-canvas.d.ts +9 -0
  296. package/dist/app/scripts/utils/chr-to-abs.d.ts +10 -0
  297. package/dist/app/scripts/utils/chrom-info-bisector.d.ts +4 -0
  298. package/dist/app/scripts/utils/clone-event.d.ts +12 -0
  299. package/dist/app/scripts/utils/color-domain-to-rgba-array.d.ts +13 -0
  300. package/dist/app/scripts/utils/color-to-hex.d.ts +9 -0
  301. package/dist/app/scripts/utils/color-to-rgba.d.ts +9 -0
  302. package/dist/app/scripts/utils/copy-text-to-clipboard.d.ts +2 -0
  303. package/dist/app/scripts/utils/data-to-genomic-loci.d.ts +11 -0
  304. package/dist/app/scripts/utils/debounce.d.ts +5 -0
  305. package/dist/app/scripts/utils/dec-to-hex-str.d.ts +8 -0
  306. package/dist/app/scripts/utils/decompress.d.ts +27 -0
  307. package/dist/app/scripts/utils/default-tracks.d.ts +3 -0
  308. package/dist/app/scripts/utils/dict-from-tuples.d.ts +11 -0
  309. package/dist/app/scripts/utils/dict-items.d.ts +18 -0
  310. package/dist/app/scripts/utils/dict-keys.d.ts +10 -0
  311. package/dist/app/scripts/utils/dict-values.d.ts +8 -0
  312. package/dist/app/scripts/utils/download.d.ts +7 -0
  313. package/dist/app/scripts/utils/expand-combined-tracks.d.ts +11 -0
  314. package/dist/app/scripts/utils/fake-pub-sub.d.ts +11 -0
  315. package/dist/app/scripts/utils/fill-in-min-widths.d.ts +44 -0
  316. package/dist/app/scripts/utils/flatten.d.ts +9 -0
  317. package/dist/app/scripts/utils/for-each.d.ts +9 -0
  318. package/dist/app/scripts/utils/forward-event.d.ts +7 -0
  319. package/dist/app/scripts/utils/genome-loci-to-pixels.d.ts +9 -0
  320. package/dist/app/scripts/utils/genomic-range-to-chromosome-chunks.d.ts +21 -0
  321. package/dist/app/scripts/utils/get-aggregation-function.d.ts +10 -0
  322. package/dist/app/scripts/utils/get-default-track-for-datatype.d.ts +21 -0
  323. package/dist/app/scripts/utils/get-default-tracks-for-datatype.d.ts +3 -0
  324. package/dist/app/scripts/utils/get-element-dim.d.ts +7 -0
  325. package/dist/app/scripts/utils/get-higlass-components.d.ts +7 -0
  326. package/dist/app/scripts/utils/get-track-by-uid.d.ts +7 -0
  327. package/dist/app/scripts/utils/get-track-conf-from-hgc.d.ts +10 -0
  328. package/dist/app/scripts/utils/get-track-obj-by-id.d.ts +2 -0
  329. package/dist/app/scripts/utils/get-track-position-by-uid.d.ts +13 -0
  330. package/dist/app/scripts/utils/get-xylofon.d.ts +2 -0
  331. package/dist/app/scripts/utils/gradient.d.ts +14 -0
  332. package/dist/app/scripts/utils/has-class.d.ts +8 -0
  333. package/dist/app/scripts/utils/has-parent.d.ts +9 -0
  334. package/dist/app/scripts/utils/hex-string-to-int.d.ts +14 -0
  335. package/dist/app/scripts/utils/index.d.ts +89 -0
  336. package/dist/app/scripts/utils/interval-tree.d.ts +109 -0
  337. package/dist/app/scripts/utils/into-the-void.d.ts +6 -0
  338. package/dist/app/scripts/utils/is-track-or-child-track.d.ts +7 -0
  339. package/dist/app/scripts/utils/is-track-range-selectable.d.ts +2 -0
  340. package/dist/app/scripts/utils/is-within.d.ts +12 -0
  341. package/dist/app/scripts/utils/lat-to-y.d.ts +9 -0
  342. package/dist/app/scripts/utils/lng-to-x.d.ts +8 -0
  343. package/dist/app/scripts/utils/load-chrom-infos.d.ts +8 -0
  344. package/dist/app/scripts/utils/map.d.ts +13 -0
  345. package/dist/app/scripts/utils/max-non-zero.d.ts +6 -0
  346. package/dist/app/scripts/utils/max.d.ts +10 -0
  347. package/dist/app/scripts/utils/min-non-zero.d.ts +6 -0
  348. package/dist/app/scripts/utils/min.d.ts +10 -0
  349. package/dist/app/scripts/utils/mod.d.ts +9 -0
  350. package/dist/app/scripts/utils/ndarray-assign.d.ts +2 -0
  351. package/dist/app/scripts/utils/ndarray-flatten.d.ts +2 -0
  352. package/dist/app/scripts/utils/ndarray-to-list.d.ts +2 -0
  353. package/dist/app/scripts/utils/numericify-version.d.ts +6 -0
  354. package/dist/app/scripts/utils/obj-vals.d.ts +8 -0
  355. package/dist/app/scripts/utils/or.d.ts +8 -0
  356. package/dist/app/scripts/utils/parse-chromsizes-rows.d.ts +34 -0
  357. package/dist/app/scripts/utils/pixi-text-to-svg.d.ts +2 -0
  358. package/dist/app/scripts/utils/positioned-tracks-to-all-tracks.d.ts +26 -0
  359. package/dist/app/scripts/utils/q.d.ts +18 -0
  360. package/dist/app/scripts/utils/rad-to-deg.d.ts +7 -0
  361. package/dist/app/scripts/utils/range-query-2d.d.ts +17 -0
  362. package/dist/app/scripts/utils/reduce.d.ts +14 -0
  363. package/dist/app/scripts/utils/rel-to-abs-chrom-pos.d.ts +10 -0
  364. package/dist/app/scripts/utils/remove-class.d.ts +7 -0
  365. package/dist/app/scripts/utils/reset-d3-brush-style.d.ts +10 -0
  366. package/dist/app/scripts/utils/rgb-to-hex.d.ts +8 -0
  367. package/dist/app/scripts/utils/scales-center-and-k.d.ts +12 -0
  368. package/dist/app/scripts/utils/scales-to-genome-loci.d.ts +3 -0
  369. package/dist/app/scripts/utils/segments-to-rows.d.ts +15 -0
  370. package/dist/app/scripts/utils/selected-items-to-cum-weights.d.ts +12 -0
  371. package/dist/app/scripts/utils/selected-items-to-size.d.ts +13 -0
  372. package/dist/app/scripts/utils/show-mouse-position.d.ts +54 -0
  373. package/dist/app/scripts/utils/some.d.ts +10 -0
  374. package/dist/app/scripts/utils/sum.d.ts +8 -0
  375. package/dist/app/scripts/utils/svg-line.d.ts +2 -0
  376. package/dist/app/scripts/utils/throttle-and-debounce.d.ts +33 -0
  377. package/dist/app/scripts/utils/tile-to-canvas.d.ts +9 -0
  378. package/dist/app/scripts/utils/timeout.d.ts +3 -0
  379. package/dist/app/scripts/utils/to-void.d.ts +3 -0
  380. package/dist/app/scripts/utils/total-track-pixel-height.d.ts +27 -0
  381. package/dist/app/scripts/utils/trim-trailing-slash.d.ts +7 -0
  382. package/dist/app/scripts/utils/type-guards.d.ts +36 -0
  383. package/dist/app/scripts/utils/value-to-color.d.ts +12 -0
  384. package/dist/app/scripts/utils/visit-positioned-tracks.d.ts +18 -0
  385. package/dist/app/scripts/utils/visit-tracks.d.ts +9 -0
  386. package/dist/esm.html +1 -3
  387. package/dist/hglib.js +86315 -100592
  388. package/dist/hglib.min.js +123 -131
  389. package/dist/higlass.mjs +88861 -103138
  390. package/dist/index.html +1 -3
  391. package/dist/package.json +134 -0
  392. package/package.json +25 -27
@@ -1,9 +1,7 @@
1
1
  // @ts-nocheck
2
- /* eslint-disable react/jsx-props-no-spreading */
3
- import React from 'react';
4
- import { findDOMNode } from 'react-dom';
5
- import scrollIntoView from 'dom-scroll-into-view';
2
+
6
3
  import PropTypes from 'prop-types';
4
+ import React from 'react';
7
5
 
8
6
  const _debugStates = [];
9
7
 
@@ -102,14 +100,12 @@ class Autocomplete extends React.Component {
102
100
  };
103
101
  }
104
102
 
105
- // eslint-disable-next-line camelcase
106
103
  UNSAFE_componentWillMount() {
107
104
  this._ignoreBlur = false;
108
105
  this._performAutoCompleteOnUpdate = false;
109
106
  this._performAutoCompleteOnKeyUp = false;
110
107
  }
111
108
 
112
- // eslint-disable-next-line camelcase
113
109
  UNSAFE_componentWillReceiveProps(nextProps) {
114
110
  this._performAutoCompleteOnUpdate = true;
115
111
  // If `items` has changed we want to reset `highlightedIndex`
@@ -143,15 +139,8 @@ class Autocomplete extends React.Component {
143
139
 
144
140
  maybeScrollItemIntoView() {
145
141
  if (this.state.isOpen === true && this.state.highlightedIndex !== null) {
146
- // eslint-disable-next-line react/no-string-refs
147
142
  const itemNode = this.refs[`item-${this.state.highlightedIndex}`];
148
- // eslint-disable-next-line react/no-string-refs
149
- const menuNode = this.refs.menu;
150
- if (itemNode) {
151
- scrollIntoView(findDOMNode(itemNode), findDOMNode(menuNode), {
152
- onlyScrollIfNeeded: true,
153
- });
154
- }
143
+ itemNode?.scrollIntoView({ block: 'nearest', behavior: 'smooth' });
155
144
  }
156
145
  }
157
146
 
@@ -217,9 +206,9 @@ class Autocomplete extends React.Component {
217
206
  const node = this.inputEl;
218
207
  const rect = node.getBoundingClientRect();
219
208
  const computedStyle = global.window.getComputedStyle(node);
220
- const marginBottom = parseInt(computedStyle.marginBottom, 10) || 0;
221
- const marginLeft = parseInt(computedStyle.marginLeft, 10) || 0;
222
- const marginRight = parseInt(computedStyle.marginRight, 10) || 0;
209
+ const marginBottom = Number.parseInt(computedStyle.marginBottom, 10) || 0;
210
+ const marginLeft = Number.parseInt(computedStyle.marginLeft, 10) || 0;
211
+ const marginRight = Number.parseInt(computedStyle.marginRight, 10) || 0;
223
212
  this.setState({
224
213
  menuTop: rect.bottom + marginBottom,
225
214
  menuLeft: rect.left + marginLeft,
@@ -354,26 +343,26 @@ class Autocomplete extends React.Component {
354
343
  autoComplete="off"
355
344
  onBlur={this.composeEventHandlers(
356
345
  this.handleInputBlur.bind(this),
357
- inputProps.onBlur && inputProps.onBlur.bind(this),
346
+ inputProps.onBlur?.bind(this),
358
347
  )}
359
348
  onChange={this.handleChange.bind(this)}
360
349
  onClick={this.composeEventHandlers(
361
350
  this.handleInputClick.bind(this),
362
- inputProps.onClick && inputProps.onClick.bind(this),
351
+ inputProps.onClick?.bind(this),
363
352
  )}
364
353
  onFocus={this.composeEventHandlers(
365
354
  this.handleInputFocus.bind(this),
366
- inputProps.onFocus && inputProps.onFocus.bind(this),
355
+ inputProps.onFocus?.bind(this),
367
356
  )}
368
357
  onKeyDown={this.composeEventHandlers(
369
358
  this.handleKeyDown.bind(this),
370
- inputProps.onKeyDown && inputProps.onKeyDown.bind(this),
359
+ inputProps.onKeyDown?.bind(this),
371
360
  )}
372
361
  onKeyUp={this.composeEventHandlers(
373
362
  this.handleKeyUp.bind(this),
374
- inputProps.onKeyUp && inputProps.onKeyUp.bind(this),
363
+ inputProps.onKeyUp?.bind(this),
375
364
  )}
376
- // eslint-disable-next-line jsx-a11y/role-has-required-aria-props
365
+ // biome-ignore lint/a11y/useAriaPropsForRole:
377
366
  role="combobox"
378
367
  value={this.props.value}
379
368
  />
@@ -403,11 +392,7 @@ Autocomplete.defaultProps = {
403
392
  onChange() {},
404
393
  onSelect() {},
405
394
  renderMenu(items, value, style) {
406
- return (
407
- /* eslint-disable react/no-this-in-sfc */
408
- <div style={{ ...style, ...this.menuStyle }}>{items}</div>
409
- /* eslint-enable react/no-this-in-sfc */
410
- );
395
+ return <div style={{ ...style, ...this.menuStyle }}>{items}</div>;
411
396
  },
412
397
  shouldItemRender() {
413
398
  return true;
@@ -138,7 +138,7 @@ class AxisPixi {
138
138
  graphics.moveTo(-TICK_MARGIN, valueScale(tick));
139
139
  graphics.lineTo(-(TICK_MARGIN + TICK_LENGTH), valueScale(tick));
140
140
 
141
- if (this.track && this.track.flipText) {
141
+ if (this.track?.flipText) {
142
142
  this.axisTexts[i].scale.x = -1;
143
143
  }
144
144
  }
@@ -180,7 +180,7 @@ class AxisPixi {
180
180
  graphics.moveTo(TICK_MARGIN, valueScale(tick));
181
181
  graphics.lineTo(TICK_MARGIN + TICK_LENGTH, valueScale(tick));
182
182
 
183
- if (this.track && this.track.flipText) {
183
+ if (this.track?.flipText) {
184
184
  this.axisTexts[i].scale.x = -1;
185
185
  }
186
186
  }
@@ -228,7 +228,7 @@ class AxisPixi {
228
228
 
229
229
  let stroke = 'black';
230
230
 
231
- if (this.track && this.track.options.lineStrokeColor) {
231
+ if (this.track?.options.lineStrokeColor) {
232
232
  stroke = this.track.options.lineStrokeColor;
233
233
  }
234
234
  // TODO: On the canvas, there is no vertical line beside the scale,
@@ -254,7 +254,7 @@ class AxisPixi {
254
254
  // factor out the styling for axis lines
255
255
  let stroke = 'black';
256
256
 
257
- if (this.track && this.track.options.lineStrokeColor) {
257
+ if (this.track?.options.lineStrokeColor) {
258
258
  stroke = this.track.options.lineStrokeColor;
259
259
  }
260
260
 
@@ -306,9 +306,7 @@ class AxisPixi {
306
306
 
307
307
  tickLine.setAttribute(
308
308
  'd',
309
- `M${+TICK_MARGIN},${valueScale(tick)} L${+(
310
- TICK_MARGIN + TICK_LENGTH
311
- )},${valueScale(tick)}`,
309
+ `M${+TICK_MARGIN},${valueScale(tick)} L${+(TICK_MARGIN + TICK_LENGTH)},${valueScale(tick)}`,
312
310
  );
313
311
 
314
312
  const g = document.createElement('g');
@@ -352,9 +350,7 @@ class AxisPixi {
352
350
 
353
351
  tickLine.setAttribute(
354
352
  'd',
355
- `M${-TICK_MARGIN},${valueScale(tick)} L${-(
356
- TICK_MARGIN + TICK_LENGTH
357
- )},${valueScale(tick)}`,
353
+ `M${-TICK_MARGIN},${valueScale(tick)} L${-(TICK_MARGIN + TICK_LENGTH)},${valueScale(tick)}`,
358
354
  );
359
355
 
360
356
  const g = document.createElement('g');
@@ -20,7 +20,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
20
20
  this.pMain.addChild(this.zeroLine);
21
21
  this.valueScaleTransform = zoomIdentity;
22
22
 
23
- if (this.options && this.options.colorRange) {
23
+ if (this.options?.colorRange) {
24
24
  if (this.options.colorRangeGradient) {
25
25
  this.setColorGradient(this.options.colorRange);
26
26
  } else {
@@ -226,7 +226,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
226
226
  }
227
227
 
228
228
  rerender(options, force) {
229
- if (options && options.colorRange) {
229
+ if (options?.colorRange) {
230
230
  if (options.colorRangeGradient) {
231
231
  this.setColorGradient(options.colorRange);
232
232
  } else {
@@ -430,7 +430,7 @@ class BarTrack extends HorizontalLine1DPixiTrack {
430
430
  if (this.options.zeroLine) this.drawZeroLineSvg(output);
431
431
 
432
432
  this.visibleAndFetchedTiles()
433
- .filter((tile) => tile.svgData && tile.svgData.barXValues)
433
+ .filter((tile) => tile.svgData?.barXValues)
434
434
  .forEach((tile) => {
435
435
  // const [xScale, xPos] = this.getXScaleAndOffset(tile.drawnAtScale);
436
436
  const data = tile.svgData;