gnosys 4.0.0

package/dist/lib/trace.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"trace.js","sourceRoot":"","sources":["../../src/lib/trace.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAEH,OAAO,EAAE,MAAM,IAAI,CAAC;AACpB,OAAO,IAAI,MAAM,MAAM,CAAC;AA6BxB,wEAAwE;AAExE;;;;;GAKG;AACH,SAAS,eAAe,CAAC,QAAgB,EAAE,OAAe;IACxD,MAAM,OAAO,GAAG,EAAE,CAAC,YAAY,CAAC,QAAQ,EAAE,OAAO,CAAC,CAAC;IACnD,MAAM,KAAK,GAAG,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAClC,MAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAC;IACjD,MAAM,KAAK,GAAgB,EAAE,CAAC;IAE9B,6BAA6B;IAC7B,MAAM,WAAW,GAAa,EAAE,CAAC;IACjC,MAAM,WAAW,GAAG,mEAAmE,CAAC;IACxF,IAAI,WAAmC,CAAC;IACxC,OAAO,CAAC,WAAW,GAAG,WAAW,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC;QACjD,WAAW,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,CAAC;IACnC,CAAC;IAED,8FAA8F;IAC9F,MAAM,YAAY,GAAG;QACnB,gDAAgD;QAChD,mDAAmD;QACnD,oDAAoD;QACpD,8FAA8F;QAC9F,gDAAgD;QAChD,4DAA4D;KAC7D,CAAC;IAEF,8BAA8B;IAC9B,MAAM,UAAU,GAAG,uEAAuE,CAAC;IAE3F,wDAAwD;IACxD,MAAM,SAAS,GAAG,eAAe,CAAC;IAElC,kDAAkD;IAClD,MAAM,QAAQ,GAAG,IAAI,GAAG,CAAC;QACvB,IAAI,EAAE,KAAK,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ,EAAE,OAAO,EAAE,KAAK,EAAE,QAAQ;QAC3E,YAAY,EAAE,QAAQ,EAAE,MAAM,EAAE,OAAO,EAAE,OAAO,EAAE,QAAQ,EAAE,QAAQ;QACpE,SAAS,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,QAAQ;QACpE,QAAQ,EAAE,SAAS,EAAE,KAAK,EAAE,KAAK,EAAE,SAAS,EAAE,OAAO,EAAE,MAAM,EAAE,MAAM;QACrE,UAAU,EAAE,YAAY,EAAE,YAAY,EAAE,aAAa,EAAE,cAAc;QACrE,eAAe,EAAE,QAAQ,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,SAAS;QACjE,UAAU,EAAE,IAAI,EAAE,QAAQ,EAAE,MAAM,EAAE,YAAY,EAAE,WAAW;KAC9D,CAAC,CAAC;IAEH,0DAA0D;IAC1D,MAAM,aAAa,GAAG,IAAI,GAAG,EAAU,CAAC;IAExC,KAAK,MAAM,OAAO,IAAI,YAAY,EAAE,CAAC;QACnC,OAAO,CAAC,SAAS,GAAG,CAAC,CAAC;QACtB,IAAI,KAA6B,CAAC;QAClC,OAAO,CAAC,KAAK,GAAG,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC;YACvC,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YACtB,IAAI,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,SAAS;YAC5D,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YAExB,mBAAmB;YACnB,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;YAEjE,KAAK,CAAC,IAAI,CAAC;gBACT,IAAI;gBACJ,IAAI,EAAE,OAAO;gBACb,IAAI,EAAE,UAAU;gBAChB,IAAI,EAAE,OAAO;gBACb,KAAK,EAAE,EAAE;gBACT,QAAQ,EAAE,EAAE;gBACZ,OAAO,EAAE,WAAW;aACrB,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,kBAAkB;IAClB,CAAC;QACC,UAAU,CAAC,SAAS,GAAG,CAAC,CAAC;QACzB,IAAI,KAA6B,CAAC;QAClC,OAAO,CAAC,KAAK,GAAG,UAAU,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,EAAE,CAAC;YAC1C,MAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;YACtB,IAAI,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC;gBAAE,SAAS;YACtC,aAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;YACxB,MAAM,OAAO,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,EAAE,KAAK,CAAC,KAAK,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,MAAM,CAAC;YACjE,KAAK,CAAC,IAAI,CAAC;gBACT,IAAI;gBACJ,IAAI,EAAE,OAAO;gBACb,IAAI,EAAE,OAAO;gBACb,IAAI,EAAE,OAAO;gBACb,KAAK,EAAE,EAAE;gBACT,QAAQ,EAAE,EAAE;gBACZ,OAAO,EAAE,WAAW;aACrB,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,8DAA8D;IAC9D,sEAAsE;IACtE,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,iFAAiF;QACjF,MAAM,SAAS,GAAG,IAAI,CAAC,IAAI,GAAG,CAAC,CAAC;QAChC,IAAI,OAAO,GAAG,KAAK,CAAC,MAAM,CAAC;QAE3B,0FAA0F;QAC1F,IAAI,UAAU,GAAG,CAAC,CAAC;QACnB,IAAI,SAAS,GAAG,KAAK,CAAC;QACtB,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,KAAK,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YAC9C,KAAK,MAAM,EAAE,IAAI,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC;gBAC1B,IAAI,EAAE,KAAK,GAAG,EAAE,CAAC;oBAAC,UAAU,EAAE,CAAC;oBAAC,SAAS,GAAG,IAAI,CAAC;gBAAC,CAAC;gBACnD,IAAI,EAAE,KAAK,GAAG,EAAE,CAAC;oBAAC,UAAU,EAAE,CAAC;gBAAC,CAAC;YACnC,CAAC;YACD,IAAI,SAAS,IAAI,UAAU,IAAI,CAAC,EAAE,CAAC;gBACjC,OAAO,GAAG,CAAC,GAAG,CAAC,CAAC;gBAChB,MAAM;YACR,CAAC;QACH,CAAC;QAED,MAAM,IAAI,GAAG,KAAK,CAAC,KAAK,CAAC,SAAS,EAAE,OAAO,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACxD,SAAS,CAAC,SAAS,GAAG,CAAC,CAAC;QACxB,IAAI,SAAiC,CAAC;QACtC,MAAM,OAAO,GAAG,IAAI,GAAG,EAAU,CAAC;QAClC,OAAO,CAAC,SAAS,GAAG,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,EAAE,CAAC;YAC1C,MAAM,MAAM,GAAG,SAAS,CAAC,CAAC,CAAC,CAAC;YAC5B,IAAI,MAAM,KAAK,IAAI,CAAC,IAAI,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,aAAa,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE,CAAC;gBAC/E,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;YACtB,CAAC;QACH,CAAC;QACD,IAAI,CAAC,KAAK,GAAG,CAAC,GAAG,OAAO,CAAC,CAAC;IAC5B,CAAC;IAED,qBAAqB;IACrB,MAAM,OAAO,GAAG,IAAI,GAAG,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;IACvD,KAAK,MAAM,IAAI,IAAI,KAAK,EAAE,CAAC;QACzB,KAAK,MAAM,MAAM,IAAI,IAAI,CAAC,KAAK,EAAE,CAAC;YAChC,MAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;YACnC,IAAI,MAAM,EAAE,CAAC;gBACX,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAClC,CAAC;QACH,CAAC;IACH,CAAC;IAED,OAAO,KAAK,CAAC;AACf,CAAC;AAED,2EAA2E;AAE3E,SAAS,mBAAmB,CAAC,OAAe;IAC1C,MAAM,KAAK,GAAa,EAAE,CAAC;IAC3B,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,CAAC,KAAK,EAAE,KAAK,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC,CAAC;IAC3D,MAAM,UAAU,GAAG,IAAI,GAAG,CAAC,CAAC,cAAc,EAAE,MAAM,EAAE,OAAO,EAAE,MAAM,EAAE,UAAU,EAAE,SAAS,CAAC,CAAC,CAAC;IAE7F,SAAS,IAAI,CAAC,GAAW;QACvB,IAAI,OAAoB,CAAC;QACzB,IAAI,CAAC;YACH,OAAO,GAAG,EAAE,CAAC,WAAW,CAAC,GAAG,EAAE,EAAE,aAAa,EAAE,IAAI,EAAE,CAAC,CAAC;QACzD,CAAC;QAAC,MAAM,CAAC;YACP,OAAO,CAAC,mCAAmC;QAC7C,CAAC;QAED,KAAK,MAAM,KAAK,IAAI,OAAO,EAAE,CAAC;YAC5B,IAAI,KAAK,CAAC,IA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package/dist/lib/webIndex.d.ts

@@ -0,0 +1,28 @@
+/**
+ * Gnosys Web Index — Build-time inverted index generator.
+ *
+ * Reads a directory of Gnosys markdown files (YAML frontmatter + content),
+ * builds a TF-IDF weighted inverted index mapping tokens to documents,
+ * and writes the result as a JSON file (gnosys-index.json).
+ */
+import type { GnosysWebIndex, DocumentManifest, IndexEntry } from "./staticSearch.js";
+export type { GnosysWebIndex, DocumentManifest, IndexEntry };
+export interface BuildIndexOptions {
+    stopWords?: boolean;
+    minTokenLength?: number;
+    maxTokensPerDoc?: number;
+    includeArchived?: boolean;
+}
+/**
+ * Build a search index from a directory of Gnosys markdown files.
+ */
+export declare function buildIndexSync(knowledgeDir: string, options?: BuildIndexOptions): GnosysWebIndex;
+/**
+ * Build a search index (async wrapper).
+ */
+export declare function buildIndex(knowledgeDir: string, options?: BuildIndexOptions): Promise<GnosysWebIndex>;
+/**
+ * Write an index to a JSON file.
+ */
+export declare function writeIndex(index: GnosysWebIndex, outputPath: string): Promise<void>;
+//# sourceMappingURL=webIndex.d.ts.map

package/dist/lib/webIndex.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/webIndex.js

@@ -0,0 +1,208 @@
+/**
+ * Gnosys Web Index — Build-time inverted index generator.
+ *
+ * Reads a directory of Gnosys markdown files (YAML frontmatter + content),
+ * builds a TF-IDF weighted inverted index mapping tokens to documents,
+ * and writes the result as a JSON file (gnosys-index.json).
+ */
+import fs from "fs/promises";
+import { readFileSync, writeFileSync, readdirSync, existsSync } from "fs";
+import path from "path";
+import { createHash } from "crypto";
+import matter from "gray-matter";
+// ─── Stop words ──────────────────────────────────────────────────────────
+const STOP_WORDS = new Set([
+    "a", "an", "the", "and", "or", "but", "in", "on", "at", "to", "for",
+    "of", "with", "by", "from", "is", "it", "as", "be", "was", "are",
+    "been", "has", "had", "have", "do", "does", "did", "will", "would",
+    "could", "should", "may", "might", "shall", "can", "this", "that",
+    "these", "those", "not", "no", "nor", "so", "if", "then", "than",
+    "too", "very", "just", "about", "above", "after", "again", "all",
+    "also", "am", "any", "because", "before", "between", "both", "each",
+    "few", "he", "she", "her", "him", "his", "how", "its", "me", "more",
+    "most", "my", "new", "now", "only", "other", "our", "out", "own",
+    "re", "same", "some", "such", "up", "us", "we", "what", "when",
+    "where", "which", "who", "whom", "why", "you", "your",
+]);
+// ─── Tokenization ────────────────────────────────────────────────────────
+function tokenize(text, minLength) {
+    return text
+        .toLowerCase()
+        .replace(/[^\w\s-]/g, " ")
+        .split(/\s+/)
+        .filter((t) => t.length >= minLength);
+}
+function filterStopWords(tokens) {
+    return tokens.filter((t) => !STOP_WORDS.has(t));
+}
+// ─── Tag flattening ──────────────────────────────────────────────────────
+function flattenTags(tags) {
+    if (!tags)
+        return [];
+    if (Array.isArray(tags))
+        return tags.map((t) => String(t));
+    if (typeof tags === "object") {
+        const flat = [];
+        for (const values of Object.values(tags)) {
+            if (Array.isArray(values)) {
+                for (const v of values) {
+                    const s = String(v);
+                    if (!flat.includes(s))
+                        flat.push(s);
+                }
+            }
+        }
+        return flat;
+    }
+    return [];
+}
+// ─── Find markdown files recursively ─────────────────────────────────────
+function findMarkdownFiles(dir) {
+    const results = [];
+    function walk(current) {
+        if (!existsSync(current))
+            return;
+        const entries = readdirSync(current, { withFileTypes: true });
+        for (const entry of entries) {
+            const fullPath = path.join(current, entry.name);
+            if (entry.isDirectory()) {
+                walk(fullPath);
+            }
+            else if (entry.isFile() && entry.name.endsWith(".md")) {
+                results.push(fullPath);
+            }
+        }
+    }
+    walk(dir);
+    return results.sort();
+}
+// ─── Build Index ─────────────────────────────────────────────────────────
+/**
+ * Build a search index from a directory of Gnosys markdown files.
+ */
+export function buildIndexSync(knowledgeDir, options = {}) {
+    const { stopWords = true, minTokenLength = 2, maxTokensPerDoc = 500, includeArchived = false, } = options;
+    const resolvedDir = path.resolve(knowledgeDir);
+    const mdFiles = findMarkdownFiles(resolvedDir);
+    const documents = [];
+    // Collect weighted tokens per document for TF calculation
+    const docTokenSets = [];
+    for (const filePath of mdFiles) {
+        let raw;
+        try {
+            raw = readFileSync(filePath, "utf-8");
+        }
+        catch {
+            continue; // skip unreadable files
+        }
+        let parsed;
+        try {
+            parsed = matter(raw);
+        }
+        catch {
+            continue; // skip files with malformed frontmatter
+        }
+        const fm = parsed.data;
+        const status = fm.status || "active";
+        if (!includeArchived && status === "archived")
+            continue;
+        const relativePath = path.relative(resolvedDir, filePath);
+        const contentBody = parsed.content.trim();
+        const contentHash = createHash("sha256").update(raw).digest("hex");
+        const tags = flattenTags(fm.tags);
+        const relevance = typeof fm.relevance === "string" ? fm.relevance : "";
+        const title = typeof fm.title === "string" ? fm.title : path.basename(filePath, ".md");
+        const id = typeof fm.id === "string" ? fm.id : path.basename(filePath, ".md");
+        const category = typeof fm.category === "string" ? fm.category : "general";
+        const created = typeof fm.created === "string" ? fm.created : null;
+        const docIndex = documents.length;
+        documents.push({
+            id,
+            path: relativePath,
+            title,
+            category,
+            tags,
+            relevance,
+            contentHash,
+            contentLength: contentBody.length,
+            created,
+            status,
+        });
+        // Build weighted token map for this document
+        const tokenScores = new Map();
+        function addTokens(text, weight) {
+            let tokens = tokenize(text, minTokenLength);
+            if (stopWords)
+                tokens = filterStopWords(tokens);
+            // Count term frequency
+            const tf = new Map();
+            for (const t of tokens) {
+                tf.set(t, (tf.get(t) || 0) + 1);
+            }
+            for (const [token, count] of tf) {
+                const current = tokenScores.get(token) || 0;
+                tokenScores.set(token, current + count * weight);
+            }
+        }
+        // Relevance keywords — highest weight (3x)
+        addTokens(relevance, 3);
+        // Tags — medium weight (2x)
+        addTokens(tags.join(" "), 2);
+        // Title — medium weight (2x)
+        addTokens(title, 2);
+        // Content body — standard weight (1x), capped
+        const contentTokens = tokenize(contentBody, minTokenLength);
+        const cappedContent = contentTokens.slice(0, maxTokensPerDoc).join(" ");
+        addTokens(cappedContent, 1);
+        docTokenSets.push(tokenScores);
+    }
+    // Build inverted index
+    const invertedIndex = {};
+    // Compute IDF: log(N / df) where df = number of docs containing the token
+    const docFrequency = new Map();
+    for (const tokenScores of docTokenSets) {
+        for (const token of tokenScores.keys()) {
+            docFrequency.set(token, (docFrequency.get(token) || 0) + 1);
+        }
+    }
+    const N = documents.length || 1;
+    for (let docIdx = 0; docIdx < docTokenSets.length; docIdx++) {
+        const tokenScores = docTokenSets[docIdx];
+        for (const [token, weightedTf] of tokenScores) {
+            const df = docFrequency.get(token) || 1;
+            const idf = Math.log(1 + N / df);
+            const score = parseFloat((weightedTf * idf).toFixed(4));
+            if (!invertedIndex[token]) {
+                invertedIndex[token] = [];
+            }
+            invertedIndex[token].push({ docIndex: docIdx, score });
+        }
+    }
+    // Sort tokens alphabetically for deterministic output
+    const sortedIndex = {};
+    for (const token of Object.keys(invertedIndex).sort()) {
+        sortedIndex[token] = invertedIndex[token];
+    }
+    return {
+        version: 1,
+        generated: new Date().toISOString(),
+        documentCount: documents.length,
+        documents,
+        invertedIndex: sortedIndex,
+    };
+}
+/**
+ * Build a search index (async wrapper).
+ */
+export async function buildIndex(knowledgeDir, options) {
+    return buildIndexSync(knowledgeDir, options);
+}
+/**
+ * Write an index to a JSON file.
+ */
+export async function writeIndex(index, outputPath) {
+    const dir = path.dirname(outputPath);
+    await fs.mkdir(dir, { recursive: true });
+    writeFileSync(outputPath, JSON.stringify(index, null, 2), "utf-8");
+}
+//# sourceMappingURL=webIndex.js.map

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package/dist/lib/webIngest.d.ts

@@ -0,0 +1,51 @@
+/**
+ * Gnosys Web Ingest — Site crawling and content extraction for web knowledge base.
+ *
+ * Crawls a website (from sitemap, directory, or URL list), converts pages to markdown,
+ * generates Gnosys-format memory files with YAML frontmatter, and writes them to the
+ * knowledge directory.
+ */
+import type { GnosysConfig } from "./config.js";
+export interface WebIngestConfig {
+    source: "sitemap" | "directory" | "urls";
+    sitemapUrl?: string;
+    contentDir?: string;
+    urls?: string[];
+    outputDir: string;
+    exclude?: string[];
+    categories: Record<string, string>;
+    llmEnrich?: boolean;
+    prune?: boolean;
+    concurrency?: number;
+    crawlDelayMs?: number;
+    dryRun?: boolean;
+    verbose?: boolean;
+}
+export interface IngestResult {
+    added: string[];
+    updated: string[];
+    unchanged: string[];
+    removed: string[];
+    errors: Array<{
+        url: string;
+        error: string;
+    }>;
+    duration: number;
+}
+/**
+ * Ingest a website into a Gnosys knowledge directory.
+ */
+export declare function ingestSite(config: WebIngestConfig, gnosysConfig?: GnosysConfig): Promise<IngestResult>;
+/**
+ * Ingest a single URL into the knowledge base.
+ */
+export declare function ingestUrl(url: string, config: WebIngestConfig, gnosysConfig?: GnosysConfig): Promise<IngestResult>;
+/**
+ * Ingest from a local directory.
+ */
+export declare function ingestDirectory(dir: string, config: WebIngestConfig, gnosysConfig?: GnosysConfig): Promise<IngestResult>;
+/**
+ * Remove all knowledge files from the output directory.
+ */
+export declare function removeKnowledge(knowledgePath: string): Promise<void>;
+//# sourceMappingURL=webIngest.d.ts.map

package/dist/lib/webIngest.d.ts.map

@@ -0,0 +1 @@
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