gnosys 4.0.0

package/dist/lib/staticSearch.js.map

@@ -0,0 +1 @@
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package/dist/lib/store.d.ts

@@ -0,0 +1,79 @@
+/**
+ * Gnosys Store — Core module for reading/writing atomic memory files.
+ * The filesystem is the source of truth. All memories are markdown files
+ * with YAML frontmatter organized in category directories.
+ */
+export interface MemoryFrontmatter {
+    id: string;
+    title: string;
+    category: string;
+    tags: Record<string, string[]> | string[];
+    relevance: string;
+    author: "human" | "ai" | "human+ai";
+    authority: "declared" | "observed" | "imported" | "inferred";
+    confidence: number;
+    created: string;
+    modified: string;
+    last_reviewed?: string | null;
+    status: "active" | "archived" | "superseded";
+    supersedes?: string | null;
+    superseded_by?: string | null;
+    reinforcement_count?: number;
+    last_reinforced?: string | null;
+    [key: string]: unknown;
+}
+export interface Memory {
+    frontmatter: MemoryFrontmatter;
+    content: string;
+    filePath: string;
+    relativePath: string;
+}
+export declare class GnosysStore {
+    private storePath;
+    private gitEnabled;
+    constructor(storePath: string);
+    /** Validate that a resolved path stays within the store directory. */
+    private assertWithinStore;
+    init(): Promise<void>;
+    /**
+     * Read all memory files from the store.
+     */
+    getAllMemories(): Promise<Memory[]>;
+    /**
+     * Read a single memory by relative path.
+     */
+    readMemory(relativePath: string): Promise<Memory | null>;
+    /**
+     * Write a new memory to the store.
+     */
+    writeMemory(category: string, filename: string, frontmatter: MemoryFrontmatter, content: string, options?: {
+        autoCommit?: boolean;
+    }): Promise<string>;
+    /**
+     * Batch commit all pending changes (used after bulk imports).
+     */
+    batchCommit(message: string): Promise<void>;
+    /**
+     * Update an existing memory.
+     */
+    updateMemory(relativePath: string, updates: Partial<MemoryFrontmatter>, newContent?: string): Promise<Memory | null>;
+    /**
+     * List all categories (directories) in the store.
+     */
+    getCategories(): Promise<string[]>;
+    /**
+     * Generate a unique ID for a new memory.
+     */
+    generateId(category: string): Promise<string>;
+    /**
+     * Get the store path.
+     */
+    getStorePath(): string;
+    /**
+     * Auto-commit changes to git (silent, never user-facing).
+     * Safe: if commit fails for a real reason (not "nothing to commit"),
+     * it resets staged changes to avoid leaving a dirty index.
+     */
+    private autoCommit;
+}
+//# sourceMappingURL=store.d.ts.map

package/dist/lib/store.d.ts.map

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package/dist/lib/store.js

@@ -0,0 +1,227 @@
+/**
+ * Gnosys Store — Core module for reading/writing atomic memory files.
+ * The filesystem is the source of truth. All memories are markdown files
+ * with YAML frontmatter organized in category directories.
+ */
+import fs from "fs/promises";
+import path from "path";
+import matter from "gray-matter";
+import { glob } from "glob";
+import { execFileSync } from "child_process";
+/**
+ * Flatten categorized tags into a flat array for Obsidian compatibility.
+ * Input:  { domain: ["food", "nutrition"], type: ["fact"] }
+ * Output: ["food", "nutrition", "fact"]
+ * Already-flat arrays pass through unchanged.
+ */
+function flattenTags(tags) {
+    if (Array.isArray(tags))
+        return tags;
+    if (!tags || typeof tags !== "object")
+        return [];
+    const flat = [];
+    for (const values of Object.values(tags)) {
+        if (Array.isArray(values)) {
+            for (const v of values) {
+                if (!flat.includes(v))
+                    flat.push(v);
+            }
+        }
+    }
+    return flat;
+}
+export class GnosysStore {
+    storePath;
+    gitEnabled;
+    constructor(storePath) {
+        this.storePath = path.resolve(storePath);
+        this.gitEnabled = false;
+    }
+    /** Validate that a resolved path stays within the store directory. */
+    assertWithinStore(fullPath) {
+        const resolved = path.resolve(fullPath);
+        const storeResolved = path.resolve(this.storePath);
+        if (!resolved.startsWith(storeResolved + path.sep) && resolved !== storeResolved) {
+            throw new Error("Path traversal detected: path escapes the store directory");
+        }
+    }
+    async init() {
+        // Ensure store directory exists
+        await fs.mkdir(this.storePath, { recursive: true });
+        await fs.mkdir(path.join(this.storePath, ".config"), { recursive: true });
+        // Init git if not already
+        try {
+            const gitDir = path.join(this.storePath, ".git");
+            const stat = await fs.stat(gitDir).catch(() => null);
+            if (!stat) {
+                execFileSync("git", ["init"], { cwd: this.storePath, stdio: "pipe" });
+            }
+            this.gitEnabled = true;
+        }
+        catch {
+            this.gitEnabled = false;
+        }
+    }
+    /**
+     * Read all memory files from the store.
+     */
+    async getAllMemories() {
+        const files = await glob("**/*.md", {
+            cwd: this.storePath,
+            ignore: ["MANIFEST.md", "CHANGELOG.md", ".config/**", "node_modules/**"],
+        });
+        const memories = [];
+        for (const file of files) {
+            try {
+                const memory = await this.readMemory(file);
+                if (memory)
+                    memories.push(memory);
+            }
+            catch {
+                // Skip files that can't be parsed
+            }
+        }
+        return memories;
+    }
+    /**
+     * Read a single memory by relative path.
+     */
+    async readMemory(relativePath) {
+        const fullPath = path.join(this.storePath, relativePath);
+        this.assertWithinStore(fullPath);
+        try {
+            const raw = await fs.readFile(fullPath, "utf-8");
+            const parsed = matter(raw);
+            if (!parsed.data.id)
+                return null; // Not a valid memory file
+            return {
+                frontmatter: parsed.data,
+                content: parsed.content.trim(),
+                filePath: fullPath,
+                relativePath,
+            };
+        }
+        catch {
+            return null;
+        }
+    }
+    /**
+     * Write a new memory to the store.
+     */
+    async writeMemory(category, filename, frontmatter, content, options) {
+        const dir = path.join(this.storePath, category);
+        this.assertWithinStore(dir);
+        await fs.mkdir(dir, { recursive: true });
+        const filePath = path.join(dir, filename);
+        this.assertWithinStore(filePath);
+        const relativePath = path.join(category, filename);
+        // Flatten tags for Obsidian compatibility (nested objects → flat array)
+        const serializable = { ...frontmatter, tags: flattenTags(frontmatter.tags) };
+        const fileContent = matter.stringify(content, serializable);
+        await fs.writeFile(filePath, fileContent, "utf-8");
+        // Auto git commit (skip when batching)
+        if (options?.autoCommit !== false) {
+            await this.autoCommit(`Add memory: ${frontmatter.title}`);
+        }
+        return relativePath;
+    }
+    /**
+     * Batch commit all pending changes (used after bulk imports).
+     */
+    async batchCommit(message) {
+        await this.autoCommit(message);
+    }
+    /**
+     * Update an existing memory.
+     */
+    async updateMemory(relativePath, updates, newContent) {
+        const existing = await this.readMemory(relativePath);
+        if (!existing)
+            return null;
+        const updatedFrontmatter = {
+            ...existing.frontmatter,
+            ...updates,
+            modified: new Date().toISOString().split("T")[0],
+        };
+        const updatedContent = newContent ?? existing.content;
+        const fullPath = path.join(this.storePath, relativePath);
+        this.assertWithinStore(fullPath);
+        // Flatten tags for Obsidian compatibility
+        const serializable = { ...updatedFrontmatter, tags: flattenTags(updatedFrontmatter.tags) };
+        const fileContent = matter.stringify(updatedContent, serializable);
+        await fs.writeFile(fullPath, fileContent, "utf-8");
+        await this.autoCommit(`Update memory: ${updatedFrontmatter.title}`);
+        return {
+            frontmatter: updatedFrontmatter,
+            content: updatedContent,
+            filePath: fullPath,
+            relativePath,
+        };
+    }
+    /**
+     * List all categories (directories) in the store.
+     */
+    async getCategories() {
+        const entries = await fs.readdir(this.storePath, { withFileTypes: true });
+        return entries
+            .filter((e) => e.isDirectory() &&
+            !e.name.startsWith(".") &&
+            e.name !== "node_modules")
+            .map((e) => e.name)
+            .sort();
+    }
+    /**
+     * Generate a unique ID for a new memory.
+     */
+    async generateId(category) {
+        const prefix = category.substring(0, 4);
+        const memories = await this.getAllMemories();
+        const existingIds = memories
+            .map((m) => m.frontmatter.id)
+            .filter((id) => id.startsWith(prefix));
+        let maxNum = 0;
+        for (const id of existingIds) {
+            const match = id.match(/(\d+)$/);
+            if (match)
+                maxNum = Math.max(maxNum, parseInt(match[1]));
+        }
+        return `${prefix}-${String(maxNum + 1).padStart(3, "0")}`;
+    }
+    /**
+     * Get the store path.
+     */
+    getStorePath() {
+        return this.storePath;
+    }
+    /**
+     * Auto-commit changes to git (silent, never user-facing).
+     * Safe: if commit fails for a real reason (not "nothing to commit"),
+     * it resets staged changes to avoid leaving a dirty index.
+     */
+    async autoCommit(message) {
+        if (!this.gitEnabled)
+            return;
+        try {
+            execFileSync("git", ["add", "-A"], { cwd: this.storePath, stdio: "pipe" });
+            execFileSync("git", ["commit", "-m", message, "--allow-empty-message"], {
+                cwd: this.storePath,
+                stdio: "pipe",
+            });
+        }
+        catch (err) {
+            // "nothing to commit" is fine — anything else gets a safe reset
+            const errMsg = err instanceof Error ? err.message : String(err);
+            if (errMsg.includes("nothing to commit") || errMsg.includes("no changes added")) {
+                return;
+            }
+            // Reset staged changes to keep index clean
+            try {
+                execFileSync("git", ["reset", "HEAD"], { cwd: this.storePath, stdio: "pipe" });
+            }
+            catch {
+                // If even reset fails, there's nothing we can do
+            }
+        }
+    }
+}
+//# sourceMappingURL=store.js.map

package/dist/lib/store.js.map

@@ -0,0 +1 @@
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package/dist/lib/structuredIngest.d.ts

@@ -0,0 +1,37 @@
+/**
+ * Gnosys Structured Ingest — No-LLM fallback for web knowledge base.
+ *
+ * Generates Gnosys-format YAML frontmatter without any LLM call.
+ * Uses TF-IDF keyword extraction for the relevance field.
+ */
+export interface MemoryFrontmatterResult {
+    id: string;
+    title: string;
+    category: string;
+    tags: {
+        domain: string[];
+        type: string[];
+    };
+    relevance: string;
+    author: string;
+    authority: string;
+    confidence: number;
+    created: string;
+    status: string;
+}
+/**
+ * Extract structured frontmatter from content without any LLM call.
+ */
+export declare function extractStructuredFrontmatter(content: string, url: string, categoryMap: Record<string, string>): MemoryFrontmatterResult;
+/**
+ * Compute TF-IDF scores across a corpus of documents.
+ * Returns top terms per document for use as relevance keywords.
+ */
+export declare function computeTfIdf(documents: Array<{
+    id: string;
+    content: string;
+}>, topN?: number): Map<string, Array<{
+    term: string;
+    score: number;
+}>>;
+//# sourceMappingURL=structuredIngest.d.ts.map

package/dist/lib/structuredIngest.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/structuredIngest.js

@@ -0,0 +1,208 @@
+/**
+ * Gnosys Structured Ingest — No-LLM fallback for web knowledge base.
+ *
+ * Generates Gnosys-format YAML frontmatter without any LLM call.
+ * Uses TF-IDF keyword extraction for the relevance field.
+ */
+// ─── Stop words ──────────────────────────────────────────────────────────
+const STOP_WORDS = new Set([
+    "a", "an", "the", "and", "or", "but", "in", "on", "at", "to", "for",
+    "of", "with", "by", "from", "is", "it", "as", "be", "was", "are",
+    "been", "has", "had", "have", "do", "does", "did", "will", "would",
+    "could", "should", "may", "might", "shall", "can", "this", "that",
+    "these", "those", "not", "no", "nor", "so", "if", "then", "than",
+    "too", "very", "just", "about", "above", "after", "again", "all",
+    "also", "am", "any", "because", "before", "between", "both", "each",
+    "few", "he", "she", "her", "him", "his", "how", "its", "me", "more",
+    "most", "my", "new", "now", "only", "other", "our", "out", "own",
+    "re", "same", "some", "such", "up", "us", "we", "what", "when",
+    "where", "which", "who", "whom", "why", "you", "your",
+]);
+// ─── Tokenization ────────────────────────────────────────────────────────
+function tokenize(text) {
+    return text
+        .toLowerCase()
+        .replace(/[^\w\s-]/g, " ")
+        .split(/\s+/)
+        .filter((t) => t.length >= 2 && !STOP_WORDS.has(t));
+}
+// ─── Title extraction ────────────────────────────────────────────────────
+function extractTitle(content, url) {
+    // Try <h1>
+    const h1Match = content.match(/<h1[^>]*>(.*?)<\/h1>/is);
+    if (h1Match)
+        return stripHtml(h1Match[1]).trim();
+    // Try <title>
+    const titleMatch = content.match(/<title[^>]*>(.*?)<\/title>/is);
+    if (titleMatch)
+        return stripHtml(titleMatch[1]).trim();
+    // Try first markdown heading
+    const mdH1 = content.match(/^#\s+(.+)$/m);
+    if (mdH1)
+        return mdH1[1].trim();
+    // Fallback: derive from URL
+    const urlPath = new URL(url, "https://example.com").pathname;
+    const slug = urlPath.split("/").filter(Boolean).pop() || "untitled";
+    return slug
+        .replace(/[-_]/g, " ")
+        .replace(/\.\w+$/, "")
+        .replace(/\b\w/g, (c) => c.toUpperCase());
+}
+function stripHtml(html) {
+    return html.replace(/<[^>]+>/g, "");
+}
+// ─── Category inference ──────────────────────────────────────────────────
+function inferCategory(url, categoryMap) {
+    const urlPath = new URL(url, "https://example.com").pathname;
+    for (const [pattern, category] of Object.entries(categoryMap)) {
+        if (matchGlob(urlPath, pattern)) {
+            return category;
+        }
+    }
+    return "general";
+}
+/** Safe glob matching without regex — avoids ReDoS from user-controlled patterns. */
+function matchGlob(urlPath, pattern) {
+    const parts = pattern.split("*");
+    if (parts.length === 1)
+        return urlPath === pattern;
+    if (!urlPath.startsWith(parts[0]))
+        return false;
+    let pos = parts[0].length;
+    for (let i = 1; i < parts.length; i++) {
+        const segment = parts[i];
+        if (i === parts.length - 1 && segment === "")
+            return true;
+        const idx = urlPath.indexOf(segment, pos);
+        if (idx === -1)
+            return false;
+        pos = idx + segment.length;
+    }
+    return pos === urlPath.length || parts[parts.length - 1] === "";
+}
+// ─── Tag extraction ──────────────────────────────────────────────────────
+function extractTags(content, url) {
+    const domain = [];
+    const type = [];
+    // Extract from <meta name="keywords">
+    const metaMatch = content.match(/<meta\s+name=["']keywords["']\s+content=["']([^"']+)["']/i);
+    if (metaMatch) {
+        const keywords = metaMatch[1].split(",").map((k) => k.trim().toLowerCase()).filter(Boolean);
+        domain.push(...keywords.slice(0, 5));
+    }
+    // Infer type from URL path
+    const urlPath = new URL(url, "https://example.com").pathname;
+    const segments = urlPath.split("/").filter(Boolean);
+    if (segments.length > 0) {
+        const firstSegment = segments[0].toLowerCase();
+        if (["blog", "posts", "articles", "news"].includes(firstSegment)) {
+            type.push("article");
+        }
+        else if (["docs", "documentation", "guide", "guides"].includes(firstSegment)) {
+            type.push("documentation");
+        }
+        else if (["products", "product"].includes(firstSegment)) {
+            type.push("product");
+        }
+        else if (["services", "service"].includes(firstSegment)) {
+            type.push("service");
+        }
+        else if (["about", "team", "company"].includes(firstSegment)) {
+            type.push("company-info");
+        }
+        else if (["faq", "faqs", "help", "support"].includes(firstSegment)) {
+            type.push("faq");
+        }
+        else {
+            type.push("page");
+        }
+    }
+    else {
+        type.push("page");
+    }
+    return { domain, type };
+}
+// ─── ID generation ───────────────────────────────────────────────────────
+function generateId(url, category) {
+    const urlPath = new URL(url, "https://example.com").pathname;
+    const slug = urlPath
+        .split("/")
+        .filter(Boolean)
+        .pop() || "index";
+    const cleanSlug = slug
+        .replace(/\.\w+$/, "")
+        .replace(/[^a-z0-9-]/gi, "-")
+        .toLowerCase();
+    const prefix = category.slice(0, 4).toLowerCase();
+    return `${prefix}-${cleanSlug}`;
+}
+// ─── Public API ──────────────────────────────────────────────────────────
+/**
+ * Extract structured frontmatter from content without any LLM call.
+ */
+export function extractStructuredFrontmatter(content, url, categoryMap) {
+    const category = inferCategory(url, categoryMap);
+    const title = extractTitle(content, url);
+    const tags = extractTags(content, url);
+    const id = generateId(url, category);
+    return {
+        id,
+        title,
+        category,
+        tags,
+        relevance: "", // Populated later by TF-IDF across corpus
+        author: "auto-structured",
+        authority: "imported",
+        confidence: 0.7,
+        created: new Date().toISOString().split("T")[0],
+        status: "active",
+    };
+}
+/**
+ * Compute TF-IDF scores across a corpus of documents.
+ * Returns top terms per document for use as relevance keywords.
+ */
+export function computeTfIdf(documents, topN = 20) {
+    const N = documents.length;
+    if (N === 0)
+        return new Map();
+    // Compute term frequency per document
+    const docTermFreqs = new Map();
+    for (const doc of documents) {
+        const tokens = tokenize(doc.content);
+        const tf = new Map();
+        for (const token of tokens) {
+            tf.set(token, (tf.get(token) || 0) + 1);
+        }
+        // Normalize by max frequency in document
+        const maxFreq = Math.max(...tf.values(), 1);
+        const normalizedTf = new Map();
+        for (const [term, freq] of tf) {
+            normalizedTf.set(term, freq / maxFreq);
+        }
+        docTermFreqs.set(doc.id, normalizedTf);
+    }
+    // Compute document frequency for each term
+    const df = new Map();
+    for (const tf of docTermFreqs.values()) {
+        for (const term of tf.keys()) {
+            df.set(term, (df.get(term) || 0) + 1);
+        }
+    }
+    // Compute TF-IDF and select top N terms per document
+    const result = new Map();
+    for (const doc of documents) {
+        const tf = docTermFreqs.get(doc.id);
+        const scores = [];
+        for (const [term, tfScore] of tf) {
+            const docFreq = df.get(term) || 1;
+            const idf = Math.log(1 + N / docFreq);
+            scores.push({ term, score: parseFloat((tfScore * idf).toFixed(4)) });
+        }
+        // Sort by score descending, take top N
+        scores.sort((a, b) => b.score - a.score);
+        result.set(doc.id, scores.slice(0, topN));
+    }
+    return result;
+}
+//# sourceMappingURL=structuredIngest.js.map

package/dist/lib/structuredIngest.js.map

@@ -0,0 +1 @@
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package/dist/lib/tags.d.ts

@@ -0,0 +1,26 @@
+/**
+ * Gnosys Tag Registry — Categorized controlled vocabulary for tags.
+ * Stored in .config/tags.json. The ingestion LLM must use existing tags
+ * but can propose new ones for approval.
+ */
+export interface TagRegistry {
+    domain: string[];
+    type: string[];
+    concern: string[];
+    status_tag: string[];
+    [category: string]: string[];
+}
+export declare class GnosysTagRegistry {
+    private registryPath;
+    private registry;
+    constructor(storePath: string);
+    load(): Promise<TagRegistry>;
+    save(): Promise<void>;
+    getRegistry(): TagRegistry;
+    getAllTags(): string[];
+    getTagsByCategory(category: string): string[];
+    hasTag(tag: string): boolean;
+    findTagCategory(tag: string): string | null;
+    addTag(category: string, tag: string): Promise<boolean>;
+}
+//# sourceMappingURL=tags.d.ts.map

package/dist/lib/tags.d.ts.map

@@ -0,0 +1 @@
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