docrev 0.8.1 → 0.8.5

package/dist/lib/pptx-themes.js.map

@@ -0,0 +1 @@
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package/dist/lib/protect-restore.d.ts

@@ -0,0 +1,137 @@
+/**
+ * Protection and restoration utilities for markdown elements during Word import
+ *
+ * These functions protect special markdown syntax (anchors, cross-refs, math, citations,
+ * images, tables) by replacing them with placeholders before diffing, then restore them after.
+ */
+interface MarkdownPrefix {
+    prefix: string;
+    content: string;
+}
+interface ProtectedItem {
+    original: string;
+    placeholder: string;
+}
+interface ProtectedMath extends ProtectedItem {
+    type: 'inline' | 'display';
+    simplified: string;
+}
+interface ProtectedImage extends ProtectedItem {
+    label: string | null;
+    caption: string;
+    path: string;
+    figureNumber: string | null;
+}
+interface ProtectedTable extends ProtectedItem {
+    cellCount: number;
+}
+interface ProtectAnchorsResult {
+    text: string;
+    anchors: ProtectedItem[];
+}
+interface ProtectCrossrefsResult {
+    text: string;
+    crossrefs: ProtectedItem[];
+}
+interface ProtectMathResult {
+    text: string;
+    mathBlocks: ProtectedMath[];
+}
+interface ProtectCitationsResult {
+    text: string;
+    citations: string[];
+}
+interface ProtectImagesResult {
+    text: string;
+    images: ProtectedImage[];
+}
+interface ProtectTablesResult {
+    text: string;
+    tables: ProtectedTable[];
+}
+interface ImageRegistry {
+    byNumber?: Map<string, {
+        label: string;
+    }>;
+}
+/**
+ * Extract markdown prefix (headers, list markers) from a line
+ */
+export declare function extractMarkdownPrefix(line: string): MarkdownPrefix;
+/**
+ * Protect figure/table anchors before diffing
+ * Anchors like {#fig:heatmap} and {#tbl:results} should never be deleted
+ */
+export declare function protectAnchors(md: string): ProtectAnchorsResult;
+/**
+ * Restore anchors from placeholders
+ */
+export declare function restoreAnchors(text: string, anchors: ProtectedItem[]): string;
+/**
+ * Protect cross-references before diffing
+ * References like @fig:label, @tbl:label should be preserved
+ */
+export declare function protectCrossrefs(md: string): ProtectCrossrefsResult;
+/**
+ * Restore cross-references from placeholders
+ */
+export declare function restoreCrossrefs(text: string, crossrefs: ProtectedItem[]): string;
+/**
+ * Simplify LaTeX math for fuzzy matching against Word text
+ * Word renders math as text, so we need to match the rendered form
+ */
+export declare function simplifyMathForMatching(latex: string): string;
+/**
+ * Protect mathematical notation before diffing by replacing with placeholders
+ * Handles both inline $...$ and display $$...$$ math
+ */
+export declare function protectMath(md: string): ProtectMathResult;
+/**
+ * Restore math from placeholders
+ */
+export declare function restoreMath(text: string, mathBlocks: ProtectedMath[]): string;
+/**
+ * Replace rendered math in Word text with matching placeholders
+ * This is heuristic-based since Word can render math in various ways
+ */
+export declare function replaceRenderedMath(wordText: string, mathBlocks: ProtectedMath[]): string;
+/**
+ * Protect citations before diffing by replacing with placeholders
+ */
+export declare function protectCitations(md: string): ProtectCitationsResult;
+/**
+ * Restore citations from placeholders
+ */
+export declare function restoreCitations(text: string, citations: string[]): string;
+/**
+ * Remove rendered citations from Word text (replace with matching placeholders)
+ */
+export declare function replaceRenderedCitations(wordText: string, count: number): string;
+/**
+ * Protect markdown images before diffing by replacing with placeholders
+ * Images are treated as atomic blocks to prevent corruption during diff
+ *
+ * Matches: ![caption](path){#fig:label} or ![caption](path)
+ * Also matches Word-style: ![Figure N: caption](media/path)
+ */
+export declare function protectImages(md: string, registry?: ImageRegistry | null): ProtectImagesResult;
+/**
+ * Restore images from placeholders
+ */
+export declare function restoreImages(text: string, images: ProtectedImage[]): string;
+/**
+ * Match Word-extracted images to original images using registry
+ * Returns a mapping of Word image placeholders to original image placeholders
+ */
+export declare function matchWordImagesToOriginal(originalImages: ProtectedImage[], wordImages: ProtectedImage[], registry?: ImageRegistry | null): Map<string, string>;
+/**
+ * Protect markdown tables before diffing by replacing with placeholders
+ * Tables are treated as atomic blocks to prevent corruption during diff
+ */
+export declare function protectTables(md: string): ProtectTablesResult;
+/**
+ * Restore tables from placeholders
+ */
+export declare function restoreTables(text: string, tables: ProtectedTable[]): string;
+export {};
+//# sourceMappingURL=protect-restore.d.ts.map

package/dist/lib/protect-restore.d.ts.map

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package/dist/lib/protect-restore.js

@@ -0,0 +1,394 @@
+/**
+ * Protection and restoration utilities for markdown elements during Word import
+ *
+ * These functions protect special markdown syntax (anchors, cross-refs, math, citations,
+ * images, tables) by replacing them with placeholders before diffing, then restore them after.
+ */
+// =============================================================================
+// Public Functions
+// =============================================================================
+/**
+ * Extract markdown prefix (headers, list markers) from a line
+ */
+export function extractMarkdownPrefix(line) {
+    // Headers
+    const headerMatch = line.match(/^(#{1,6}\s+)/);
+    if (headerMatch && headerMatch[1]) {
+        return { prefix: headerMatch[1], content: line.slice(headerMatch[1].length) };
+    }
+    // List items
+    const listMatch = line.match(/^(\s*[-*+]\s+|\s*\d+\.\s+)/);
+    if (listMatch && listMatch[1]) {
+        return { prefix: listMatch[1], content: line.slice(listMatch[1].length) };
+    }
+    // Blockquotes
+    const quoteMatch = line.match(/^(>\s*)/);
+    if (quoteMatch && quoteMatch[1]) {
+        return { prefix: quoteMatch[1], content: line.slice(quoteMatch[1].length) };
+    }
+    return { prefix: '', content: line };
+}
+/**
+ * Protect figure/table anchors before diffing
+ * Anchors like {#fig:heatmap} and {#tbl:results} should never be deleted
+ */
+export function protectAnchors(md) {
+    const anchors = [];
+    // Match {#fig:label}, {#tbl:label}, {#eq:label}, {#sec:label} etc.
+    // Also match with additional attributes like {#fig:label width=50%}
+    const text = md.replace(/\{#(fig|tbl|eq|sec|lst):[^}]+\}/g, (match) => {
+        const idx = anchors.length;
+        const placeholder = `ANCHORBLOCK${idx}ENDANCHOR`;
+        anchors.push({ original: match, placeholder });
+        return placeholder;
+    });
+    return { text, anchors };
+}
+/**
+ * Restore anchors from placeholders
+ */
+export function restoreAnchors(text, anchors) {
+    for (const anchor of anchors) {
+        // Handle case where anchor is inside a deletion annotation
+        // {--...ANCHORBLOCK0ENDANCHOR--} should become {--...--}{#fig:label}
+        const deletionPattern = new RegExp(`\\{--([^}]*?)${anchor.placeholder}([^}]*?)--\\}`, 'g');
+        text = text.replace(deletionPattern, (match, before, after) => {
+            const cleanBefore = before.trim();
+            const cleanAfter = after.trim();
+            let result = '';
+            if (cleanBefore)
+                result += `{--${cleanBefore}--}`;
+            result += anchor.original;
+            if (cleanAfter)
+                result += `{--${cleanAfter}--}`;
+            return result;
+        });
+        // Handle case where anchor is inside a substitution
+        // {~~old ANCHORBLOCK0ENDANCHOR~>new~~} -> {~~old~>new~~}{#fig:label}
+        const substitutionPattern = new RegExp(`\\{~~([^~]*?)${anchor.placeholder}([^~]*?)~>([^~]*)~~\\}`, 'g');
+        text = text.replace(substitutionPattern, (match, oldBefore, oldAfter, newText) => {
+            const cleanOldBefore = (oldBefore ?? '').trim();
+            const cleanOldAfter = (oldAfter ?? '').trim();
+            const cleanNew = (newText ?? '').trim();
+            const oldText = (cleanOldBefore + ' ' + cleanOldAfter).trim();
+            let result = '';
+            if (oldText !== cleanNew) {
+                result += `{~~${oldText}~>${cleanNew}~~}`;
+            }
+            else {
+                result += cleanNew;
+            }
+            result += anchor.original;
+            return result;
+        });
+        // Normal replacement
+        text = text.split(anchor.placeholder).join(anchor.original);
+    }
+    return text;
+}
+/**
+ * Protect cross-references before diffing
+ * References like @fig:label, @tbl:label should be preserved
+ */
+export function protectCrossrefs(md) {
+    const crossrefs = [];
+    // Match @fig:label, @tbl:label, @eq:label, @sec:label
+    // Can appear as @fig:label or (@fig:label) or [@fig:label]
+    const text = md.replace(/@(fig|tbl|eq|sec|lst):[a-zA-Z0-9_-]+/g, (match) => {
+        const idx = crossrefs.length;
+        const placeholder = `XREFBLOCK${idx}ENDXREF`;
+        crossrefs.push({ original: match, placeholder });
+        return placeholder;
+    });
+    return { text, crossrefs };
+}
+/**
+ * Restore cross-references from placeholders
+ */
+export function restoreCrossrefs(text, crossrefs) {
+    for (const xref of crossrefs) {
+        // Handle deletions - restore the reference even if marked deleted
+        const deletionPattern = new RegExp(`\\{--([^}]*?)${xref.placeholder}([^}]*?)--\\}`, 'g');
+        text = text.replace(deletionPattern, (match, before, after) => {
+            const cleanBefore = before.trim();
+            const cleanAfter = after.trim();
+            let result = '';
+            if (cleanBefore)
+                result += `{--${cleanBefore}--}`;
+            result += xref.original;
+            if (cleanAfter)
+                result += `{--${cleanAfter}--}`;
+            return result;
+        });
+        // Handle substitutions where rendered form (Figure 1) replaced the reference
+        // {~~XREFBLOCK0ENDXREF~>Figure 1~~} -> @fig:label
+        const substitutionPattern = new RegExp(`\\{~~${xref.placeholder}~>[^~]+~~\\}`, 'g');
+        text = text.replace(substitutionPattern, xref.original);
+        // Normal replacement
+        text = text.split(xref.placeholder).join(xref.original);
+    }
+    return text;
+}
+/**
+ * Simplify LaTeX math for fuzzy matching against Word text
+ * Word renders math as text, so we need to match the rendered form
+ */
+export function simplifyMathForMatching(latex) {
+    return latex
+        // Remove common LaTeX commands
+        .replace(/\\text\{([^}]+)\}/g, '$1')
+        .replace(/\\hat\{([^}]+)\}/g, '$1')
+        .replace(/\\bar\{([^}]+)\}/g, '$1')
+        .replace(/\\frac\{([^}]+)\}\{([^}]+)\}/g, '$1/$2')
+        .replace(/\\sum_([a-z])/g, 'Σ')
+        .replace(/\\sum/g, 'Σ')
+        .replace(/\\cdot/g, '·')
+        .replace(/\\quad/g, ' ')
+        .replace(/\\,/g, ' ')
+        .replace(/\\_/g, '_')
+        .replace(/\\{/g, '{')
+        .replace(/\\}/g, '}')
+        .replace(/\\/g, '') // Remove remaining backslashes
+        .replace(/[{}]/g, '') // Remove braces
+        .replace(/\s+/g, ' ')
+        .trim();
+}
+/**
+ * Protect mathematical notation before diffing by replacing with placeholders
+ * Handles both inline $...$ and display $$...$$ math
+ */
+export function protectMath(md) {
+    const mathBlocks = [];
+    // First protect display math ($$...$$) - must be done before inline math
+    let text = md.replace(/\$\$([^$]+)\$\$/g, (match, content) => {
+        const idx = mathBlocks.length;
+        const placeholder = `MATHBLOCK${idx}ENDMATH`;
+        // Create simplified version for matching in Word text
+        const simplified = simplifyMathForMatching(content);
+        mathBlocks.push({ original: match, placeholder, type: 'display', simplified });
+        return placeholder;
+    });
+    // Then protect inline math ($...$)
+    text = text.replace(/\$([^$\n]+)\$/g, (match, content) => {
+        const idx = mathBlocks.length;
+        const placeholder = `MATHBLOCK${idx}ENDMATH`;
+        const simplified = simplifyMathForMatching(content);
+        mathBlocks.push({ original: match, placeholder, type: 'inline', simplified });
+        return placeholder;
+    });
+    return { text, mathBlocks };
+}
+/**
+ * Restore math from placeholders
+ */
+export function restoreMath(text, mathBlocks) {
+    for (const block of mathBlocks) {
+        text = text.split(block.placeholder).join(block.original);
+    }
+    return text;
+}
+/**
+ * Replace rendered math in Word text with matching placeholders
+ * This is heuristic-based since Word can render math in various ways
+ */
+export function replaceRenderedMath(wordText, mathBlocks) {
+    let result = wordText;
+    for (const block of mathBlocks) {
+        // For inline math, try to find the simplified form in Word text
+        if (block.simplified.length >= 2) {
+            // Try exact match first
+            if (result.includes(block.simplified)) {
+                result = result.replace(block.simplified, block.placeholder);
+            }
+        }
+    }
+    return result;
+}
+/**
+ * Protect citations before diffing by replacing with placeholders
+ */
+export function protectCitations(md) {
+    const citations = [];
+    const text = md.replace(/\[@[^\]]+\]/g, (match) => {
+        const idx = citations.length;
+        citations.push(match);
+        return `CITEREF${idx}ENDCITE`;
+    });
+    return { text, citations };
+}
+/**
+ * Restore citations from placeholders
+ */
+export function restoreCitations(text, citations) {
+    for (let i = 0; i < citations.length; i++) {
+        // Handle cases where placeholder might be inside annotations
+        const placeholder = `CITEREF${i}ENDCITE`;
+        text = text.split(placeholder).join(citations[i]);
+    }
+    return text;
+}
+/**
+ * Remove rendered citations from Word text (replace with matching placeholders)
+ */
+export function replaceRenderedCitations(wordText, count) {
+    // Match rendered citation patterns: (Author 2021), (Author et al. 2021), etc.
+    const pattern = /\((?:[A-Z][a-zé]+(?:\s+et\s+al\.?)?(?:\s*[&,;]\s*[A-Z][a-zé]+(?:\s+et\s+al\.?)?)*\s+\d{4}(?:[a-z])?(?:\s*[,;]\s*(?:[A-Z][a-zé]+(?:\s+et\s+al\.?)?\s+)?\d{4}(?:[a-z])?)*)\)/g;
+    let idx = 0;
+    return wordText.replace(pattern, (match) => {
+        if (idx < count) {
+            const placeholder = `CITEREF${idx}ENDCITE`;
+            idx++;
+            return placeholder;
+        }
+        return match;
+    });
+}
+/**
+ * Protect markdown images before diffing by replacing with placeholders
+ * Images are treated as atomic blocks to prevent corruption during diff
+ *
+ * Matches: ![caption](path){#fig:label} or ![caption](path)
+ * Also matches Word-style: ![Figure N: caption](media/path)
+ */
+export function protectImages(md, registry = null) {
+    const images = [];
+    // Match markdown images: ![caption](path){#anchor} or ![caption](path)
+    // The anchor is optional and can have additional attributes
+    const imagePattern = /!\[([^\]]*)\]\(([^)]+)\)(?:\{([^}]+)\})?/g;
+    const text = md.replace(imagePattern, (match, caption, path, anchor) => {
+        const idx = images.length;
+        const placeholder = `IMAGEBLOCK${idx}ENDIMAGE`;
+        // Extract label from anchor if present (e.g., "#fig:map" -> "map")
+        let label = null;
+        if (anchor) {
+            const labelMatch = anchor.match(/#(fig|tbl):([a-zA-Z0-9_-]+)/);
+            if (labelMatch) {
+                label = labelMatch[2];
+            }
+        }
+        // Try to extract figure number from Word-style caption "Figure N: ..."
+        let figureNumber = null;
+        const figNumMatch = caption.match(/^(?:Figure|Fig\.?|Table|Tbl\.?)\s+(\d+|S\d+)[:\.]?\s*/i);
+        if (figNumMatch) {
+            figureNumber = figNumMatch[1];
+        }
+        images.push({
+            original: match,
+            placeholder,
+            label,
+            caption: caption.trim(),
+            path,
+            figureNumber,
+        });
+        return placeholder;
+    });
+    return { text, images };
+}
+/**
+ * Restore images from placeholders
+ */
+export function restoreImages(text, images) {
+    for (const img of images) {
+        // Handle cases where placeholder might be inside annotations
+        // {--IMAGEBLOCK0ENDIMAGE--} should restore the original image
+        const deletionPattern = new RegExp(`\\{--[^}]*?${img.placeholder}[^}]*?--\\}`, 'g');
+        text = text.replace(deletionPattern, img.original);
+        const insertionPattern = new RegExp(`\\{\\+\\+[^}]*?${img.placeholder}[^}]*?\\+\\+\\}`, 'g');
+        text = text.replace(insertionPattern, img.original);
+        // Normal replacement
+        text = text.split(img.placeholder).join(img.original);
+    }
+    return text;
+}
+/**
+ * Match Word-extracted images to original images using registry
+ * Returns a mapping of Word image placeholders to original image placeholders
+ */
+export function matchWordImagesToOriginal(originalImages, wordImages, registry = null) {
+    const mapping = new Map();
+    const usedOriginals = new Set();
+    for (const wordImg of wordImages) {
+        let bestMatch = null;
+        let bestScore = 0;
+        for (const origImg of originalImages) {
+            if (usedOriginals.has(origImg.placeholder))
+                continue;
+            let score = 0;
+            // Match by label (most reliable)
+            if (wordImg.label && origImg.label && wordImg.label === origImg.label) {
+                score += 100;
+            }
+            // Match by figure number via registry
+            if (wordImg.figureNumber && registry) {
+                const entry = registry.byNumber?.get(`fig:${wordImg.figureNumber}`);
+                if (entry && entry.label === origImg.label) {
+                    score += 90;
+                }
+            }
+            // Match by caption similarity (first 50 chars, normalized)
+            const wordCaption = wordImg.caption.replace(/^(?:Figure|Fig\.?|Table|Tbl\.?)\s+\d+[:\.]?\s*/i, '').toLowerCase().slice(0, 50);
+            const origCaption = origImg.caption.toLowerCase().slice(0, 50);
+            if (wordCaption && origCaption && wordCaption === origCaption) {
+                score += 80;
+            }
+            else if (wordCaption && origCaption && (wordCaption.includes(origCaption.slice(0, 30)) || origCaption.includes(wordCaption.slice(0, 30)))) {
+                score += 40;
+            }
+            // Match by path similarity (filename)
+            const wordFile = wordImg.path.split('/').pop()?.toLowerCase() || '';
+            const origFile = origImg.path.split('/').pop()?.toLowerCase() || '';
+            if (wordFile === origFile) {
+                score += 30;
+            }
+            if (score > bestScore) {
+                bestScore = score;
+                bestMatch = origImg;
+            }
+        }
+        if (bestMatch && bestScore >= 40) {
+            mapping.set(wordImg.placeholder, bestMatch.placeholder);
+            usedOriginals.add(bestMatch.placeholder);
+        }
+    }
+    return mapping;
+}
+/**
+ * Protect markdown tables before diffing by replacing with placeholders
+ * Tables are treated as atomic blocks to prevent corruption during diff
+ */
+export function protectTables(md) {
+    const tables = [];
+    // Match markdown tables: lines starting with | and containing |
+    // A table is: optional caption, header row, separator row (|---|), data rows
+    const tablePattern = /(?:^(?:\*\*)?Table[^\n]*\n\n?)?(?:^\|[^\n]+\|\n)+/gm;
+    const text = md.replace(tablePattern, (match) => {
+        // Verify it's actually a table (has separator row with dashes)
+        if (!match.includes('|---') && !match.includes('| ---') && !match.includes('|:--')) {
+            return match; // Not a real table, just lines with pipes
+        }
+        const idx = tables.length;
+        const placeholder = `\n\nTABLEBLOCK${idx}ENDTABLE\n\n`;
+        // Count cells for matching in Word (approximate)
+        const cellCount = (match.match(/\|/g) || []).length;
+        tables.push({ original: match.trim(), placeholder: placeholder.trim(), cellCount });
+        return placeholder;
+    });
+    return { text, tables };
+}
+/**
+ * Restore tables from placeholders
+ */
+export function restoreTables(text, tables) {
+    for (const table of tables) {
+        // Handle cases where placeholder might be inside annotations
+        // For tables, we want to preserve the original if it wasn't changed
+        const deletionPattern = new RegExp(`\\{--[^}]*?${table.placeholder}[^}]*?--\\}`, 'g');
+        text = text.replace(deletionPattern, table.original);
+        const insertionPattern = new RegExp(`\\{\\+\\+[^}]*?${table.placeholder}[^}]*?\\+\\+\\}`, 'g');
+        text = text.replace(insertionPattern, table.original);
+        // Normal replacement
+        text = text.split(table.placeholder).join(table.original);
+    }
+    return text;
+}
+//# sourceMappingURL=protect-restore.js.map

package/dist/lib/protect-restore.js.map

@@ -0,0 +1 @@
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package/dist/lib/rate-limiter.d.ts

@@ -0,0 +1,27 @@
+/**
+ * Rate Limiter - Prevents API abuse with exponential backoff
+ */
+export interface RateLimiterOptions {
+    minDelay?: number;
+    maxDelay?: number;
+    maxRetries?: number;
+    backoffFactor?: number;
+}
+export declare class RateLimiter {
+    private minDelay;
+    private maxDelay;
+    private maxRetries;
+    private backoffFactor;
+    private lastRequestTime;
+    private currentDelay;
+    private consecutiveErrors;
+    constructor(options?: RateLimiterOptions);
+    wait(): Promise<void>;
+    onSuccess(): void;
+    onError(statusCode: number): boolean;
+    fetchWithRetry(url: string, options?: RequestInit): Promise<Response>;
+}
+export declare const crossrefLimiter: RateLimiter;
+export declare const dataciteLimiter: RateLimiter;
+export declare const doiOrgLimiter: RateLimiter;
+//# sourceMappingURL=rate-limiter.d.ts.map

package/dist/lib/rate-limiter.d.ts.map

@@ -0,0 +1 @@
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