docrev 0.8.1 → 0.8.5

package/dist/lib/doi.js.map

@@ -0,0 +1 @@
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package/dist/lib/equations.d.ts

@@ -0,0 +1,61 @@
+/**
+ * Equation extraction and conversion utilities
+ * Handle LaTeX math in Markdown ↔ Word workflows
+ *
+ * Supports:
+ * - Extract LaTeX equations from Markdown
+ * - Extract equations from Word documents (OMML → LaTeX via Pandoc)
+ * - Convert Markdown with equations to Word (LaTeX → MathML)
+ */
+import type { Equation, EquationStats, WordEquationResult } from './types.js';
+/**
+ * Extract all equations from markdown text
+ */
+export declare function extractEquations(text: string, file?: string): Equation[];
+/**
+ * Generate a markdown document with numbered equations
+ * Useful for creating an equation reference sheet
+ */
+export declare function generateEquationSheet(equations: Equation[]): string;
+interface ConvertToWordOptions {
+    preserveLatex?: boolean;
+}
+/**
+ * Convert markdown with equations to Word using pandoc
+ */
+export declare function convertToWord(inputPath: string, outputPath: string, options?: ConvertToWordOptions): Promise<{
+    success: boolean;
+    message: string;
+}>;
+/**
+ * Create a simple equations-only document
+ */
+export declare function createEquationsDoc(inputPath: string, outputPath: string): Promise<{
+    success: boolean;
+    message: string;
+    stats: {
+        display: number;
+        inline: number;
+    } | null;
+}>;
+/**
+ * Get equation statistics for a file or directory
+ */
+export declare function getEquationStats(files: string[]): EquationStats;
+/**
+ * Extract equations from a Word document using Pandoc
+ * Converts OMML (Office Math Markup) to LaTeX
+ */
+export declare function extractEquationsFromWord(docxPath: string): Promise<WordEquationResult>;
+/**
+ * Get equation summary from Word document
+ */
+export declare function getWordEquationStats(docxPath: string): Promise<{
+    count: number;
+    display: number;
+    inline: number;
+    converted: number;
+    error?: string;
+}>;
+export {};
+//# sourceMappingURL=equations.d.ts.map

package/dist/lib/equations.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/equations.js

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+/**
+ * Equation extraction and conversion utilities
+ * Handle LaTeX math in Markdown ↔ Word workflows
+ *
+ * Supports:
+ * - Extract LaTeX equations from Markdown
+ * - Extract equations from Word documents (OMML → LaTeX via Pandoc)
+ * - Convert Markdown with equations to Word (LaTeX → MathML)
+ */
+import * as fs from 'fs';
+import * as path from 'path';
+import { exec } from 'child_process';
+import { promisify } from 'util';
+import AdmZip from 'adm-zip';
+import { parseString } from 'xml2js';
+const execAsync = promisify(exec);
+const parseXml = promisify(parseString);
+// Dynamic import for mathml-to-latex (ESM)
+let MathMLToLaTeX = null;
+async function getMathMLConverter() {
+    if (!MathMLToLaTeX) {
+        try {
+            const module = await import('mathml-to-latex');
+            MathMLToLaTeX = module.MathMLToLaTeX;
+        }
+        catch {
+            return null;
+        }
+    }
+    return MathMLToLaTeX;
+}
+/**
+ * Extract all equations from markdown text
+ */
+export function extractEquations(text, file = '') {
+    const equations = [];
+    const lines = text.split('\n');
+    let inDisplayMath = false;
+    let displayMathStart = 0;
+    let displayMathContent = '';
+    for (let lineNum = 0; lineNum < lines.length; lineNum++) {
+        const line = lines[lineNum];
+        if (!line)
+            continue;
+        // Skip code blocks
+        if (line.trim().startsWith('```'))
+            continue;
+        // Handle inline math ($...$) in a segment of text
+        // Careful not to match $$ or escaped \$
+        const inlinePattern = /(?<![\$\\])\$(?!\$)([^$\n]+)\$(?!\$)/g;
+        const extractInline = (segment) => {
+            let match;
+            inlinePattern.lastIndex = 0;
+            while ((match = inlinePattern.exec(segment)) !== null) {
+                const content = match[1];
+                if (content) {
+                    equations.push({
+                        type: 'inline',
+                        content: content.trim(),
+                        line: lineNum + 1,
+                        file,
+                    });
+                }
+            }
+        };
+        // Handle display math blocks ($$...$$)
+        if (line.includes('$$')) {
+            const parts = line.split('$$');
+            if (!inDisplayMath && parts.length >= 3) {
+                // Single-line display math: $$content$$
+                // Also extract inline math from surrounding text
+                if (parts[0])
+                    extractInline(parts[0]); // Text before $$
+                for (let i = 1; i < parts.length; i += 2) {
+                    const part = parts[i];
+                    if (part && part.trim()) {
+                        equations.push({
+                            type: 'display',
+                            content: part.trim(),
+                            line: lineNum + 1,
+                            file,
+                        });
+                    }
+                }
+                // Extract inline from text after the last $$
+                const lastPart = parts[parts.length - 1];
+                if (parts.length % 2 === 1 && lastPart) {
+                    extractInline(lastPart);
+                }
+            }
+            else if (!inDisplayMath) {
+                // Start of multi-line display math
+                if (parts[0])
+                    extractInline(parts[0]); // Text before $$
+                inDisplayMath = true;
+                displayMathStart = lineNum + 1;
+                displayMathContent = parts[1] || '';
+            }
+            else {
+                // End of multi-line display math
+                inDisplayMath = false;
+                displayMathContent += '\n' + (parts[0] || '');
+                if (displayMathContent.trim()) {
+                    equations.push({
+                        type: 'display',
+                        content: displayMathContent.trim(),
+                        line: displayMathStart,
+                        file,
+                    });
+                }
+                displayMathContent = '';
+                // Text after $$ on closing line
+                const afterPart = parts[1];
+                if (afterPart) {
+                    extractInline(afterPart);
+                }
+            }
+            continue;
+        }
+        if (inDisplayMath) {
+            displayMathContent += '\n' + line;
+            continue;
+        }
+        // No display math on this line - extract inline math
+        extractInline(line);
+    }
+    return equations;
+}
+/**
+ * Generate a markdown document with numbered equations
+ * Useful for creating an equation reference sheet
+ */
+export function generateEquationSheet(equations) {
+    const lines = [];
+    lines.push('# Equations');
+    lines.push('');
+    let displayNum = 0;
+    let inlineNum = 0;
+    // Group by file
+    const byFile = new Map();
+    for (const eq of equations) {
+        if (!byFile.has(eq.file)) {
+            byFile.set(eq.file, []);
+        }
+        byFile.get(eq.file).push(eq);
+    }
+    for (const [file, fileEqs] of byFile) {
+        if (file) {
+            lines.push(`## ${file}`);
+            lines.push('');
+        }
+        for (const eq of fileEqs) {
+            if (eq.type === 'display') {
+                displayNum++;
+                lines.push(`### Equation ${displayNum} (line ${eq.line})`);
+                lines.push('');
+                lines.push('```latex');
+                lines.push(eq.content);
+                lines.push('```');
+                lines.push('');
+                lines.push('$$' + eq.content + '$$');
+                lines.push('');
+            }
+            else {
+                inlineNum++;
+                lines.push(`- **Inline ${inlineNum}** (line ${eq.line}): \`$${eq.content}$\` → $${eq.content}$`);
+            }
+        }
+        lines.push('');
+    }
+    lines.push('---');
+    lines.push(`Total: ${displayNum} display equations, ${inlineNum} inline equations`);
+    return lines.join('\n');
+}
+/**
+ * Convert markdown with equations to Word using pandoc
+ */
+export async function convertToWord(inputPath, outputPath, options = {}) {
+    const { preserveLatex = false } = options;
+    // Check pandoc is available
+    try {
+        await execAsync('pandoc --version');
+    }
+    catch {
+        return { success: false, message: 'Pandoc not found. Install pandoc first.' };
+    }
+    // Build pandoc command
+    // Use --mathml for better equation rendering in Word
+    const args = [
+        'pandoc',
+        `"${inputPath}"`,
+        '-o', `"${outputPath}"`,
+        '--mathml', // Better equation support in Word
+    ];
+    if (preserveLatex) {
+        // Keep raw LaTeX (less compatible but preserves source)
+        args.push('--wrap=preserve');
+    }
+    try {
+        await execAsync(args.join(' '));
+        return { success: true, message: `Created ${outputPath}` };
+    }
+    catch (err) {
+        return { success: false, message: err.message };
+    }
+}
+/**
+ * Create a simple equations-only document
+ */
+export async function createEquationsDoc(inputPath, outputPath) {
+    if (!fs.existsSync(inputPath)) {
+        return { success: false, message: `File not found: ${inputPath}`, stats: null };
+    }
+    const text = fs.readFileSync(inputPath, 'utf-8');
+    const equations = extractEquations(text, path.basename(inputPath));
+    if (equations.length === 0) {
+        return { success: false, message: 'No equations found', stats: { display: 0, inline: 0 } };
+    }
+    const sheet = generateEquationSheet(equations);
+    const stats = {
+        display: equations.filter(e => e.type === 'display').length,
+        inline: equations.filter(e => e.type === 'inline').length,
+    };
+    const ext = path.extname(outputPath).toLowerCase();
+    if (ext === '.docx') {
+        // Write temp md, convert to docx
+        const tempMd = outputPath.replace('.docx', '.tmp.md');
+        fs.writeFileSync(tempMd, sheet, 'utf-8');
+        const result = await convertToWord(tempMd, outputPath);
+        fs.unlinkSync(tempMd);
+        return { ...result, stats };
+    }
+    else {
+        // Write as markdown
+        fs.writeFileSync(outputPath, sheet, 'utf-8');
+        return { success: true, message: `Created ${outputPath}`, stats };
+    }
+}
+/**
+ * Get equation statistics for a file or directory
+ */
+export function getEquationStats(files) {
+    let totalDisplay = 0;
+    let totalInline = 0;
+    const byFile = [];
+    for (const file of files) {
+        if (!fs.existsSync(file))
+            continue;
+        const text = fs.readFileSync(file, 'utf-8');
+        const equations = extractEquations(text, path.basename(file));
+        const display = equations.filter(e => e.type === 'display').length;
+        const inline = equations.filter(e => e.type === 'inline').length;
+        totalDisplay += display;
+        totalInline += inline;
+        if (display > 0 || inline > 0) {
+            byFile.push({ file: path.basename(file), display, inline });
+        }
+    }
+    return {
+        total: totalDisplay + totalInline,
+        display: totalDisplay,
+        inline: totalInline,
+        byFile,
+    };
+}
+/**
+ * Extract equations from a Word document using Pandoc
+ * Converts OMML (Office Math Markup) to LaTeX
+ */
+export async function extractEquationsFromWord(docxPath) {
+    if (!fs.existsSync(docxPath)) {
+        return { success: false, equations: [], error: `File not found: ${docxPath}` };
+    }
+    // Method 1: Use Pandoc to convert docx to markdown with LaTeX math
+    try {
+        const { stdout } = await execAsync(`pandoc "${docxPath}" -t markdown --wrap=none`, { maxBuffer: 50 * 1024 * 1024 });
+        // Extract equations from the markdown output
+        const equations = extractEquations(stdout, path.basename(docxPath));
+        return {
+            success: true,
+            equations: equations.map((eq, i) => ({
+                type: eq.type,
+                latex: eq.content,
+                position: i,
+                line: eq.line,
+            })),
+        };
+    }
+    catch (err) {
+        // Pandoc failed, try fallback method
+        return extractEquationsFromWordDirect(docxPath);
+    }
+}
+/**
+ * Direct OMML extraction from Word document (fallback if Pandoc fails)
+ * Parses document.xml for <m:oMath> elements and attempts conversion
+ */
+async function extractEquationsFromWordDirect(docxPath) {
+    try {
+        const zip = new AdmZip(docxPath);
+        const documentEntry = zip.getEntry('word/document.xml');
+        if (!documentEntry) {
+            return { success: false, equations: [], error: 'Invalid docx: no document.xml' };
+        }
+        const documentXml = zip.readAsText(documentEntry);
+        // Find all OMML equations (<m:oMath> or <m:oMathPara>)
+        const ommlPattern = /<m:oMath[^>]*>[\s\S]*?<\/m:oMath>/gi;
+        const matches = documentXml.match(ommlPattern) || [];
+        if (matches.length === 0) {
+            return { success: true, equations: [] };
+        }
+        // Try to convert OMML to LaTeX via MathML intermediate
+        const Converter = await getMathMLConverter();
+        const equations = [];
+        for (let i = 0; i < matches.length; i++) {
+            const omml = matches[i];
+            if (!omml)
+                continue;
+            // Attempt OMML → MathML → LaTeX conversion
+            // Note: This is a simplified approach; full OMML→MathML requires XSLT
+            try {
+                const latex = await ommlToLatex(omml, Converter);
+                if (latex) {
+                    equations.push({
+                        type: isDisplayMath(omml) ? 'display' : 'inline',
+                        latex,
+                        position: i,
+                        raw: omml.substring(0, 100) + '...',
+                    });
+                }
+            }
+            catch {
+                // Keep raw OMML reference if conversion fails
+                equations.push({
+                    type: 'unknown',
+                    latex: null,
+                    position: i,
+                    raw: omml.substring(0, 100) + '...',
+                    error: 'Conversion failed',
+                });
+            }
+        }
+        return { success: true, equations };
+    }
+    catch (err) {
+        return { success: false, equations: [], error: err.message };
+    }
+}
+/**
+ * Check if OMML represents display math (equation on its own line)
+ */
+function isDisplayMath(omml) {
+    return omml.includes('<m:oMathPara') || omml.includes('m:jc');
+}
+/**
+ * Convert OMML to LaTeX (simplified approach)
+ * For complex equations, Pandoc method is more reliable
+ */
+async function ommlToLatex(omml, Converter) {
+    if (!Converter)
+        return null;
+    // Extract key elements from OMML and build approximate MathML
+    // This is a simplified conversion - not all OMML features are supported
+    try {
+        // Build basic MathML from OMML structure
+        const mathml = ommlToMathML(omml);
+        if (!mathml)
+            return null;
+        // Convert MathML to LaTeX
+        const latex = Converter.convert(mathml);
+        return latex;
+    }
+    catch {
+        return null;
+    }
+}
+/**
+ * Convert OMML to MathML (simplified)
+ * Maps common OMML elements to MathML equivalents
+ */
+function ommlToMathML(omml) {
+    // Remove namespace prefixes for easier parsing
+    let xml = omml
+        .replace(/<m:/g, '<')
+        .replace(/<\/m:/g, '</')
+        .replace(/<w:/g, '<w_')
+        .replace(/<\/w:/g, '</w_');
+    // Map OMML elements to MathML
+    const mappings = [
+        [/<oMath[^>]*>/gi, '<math xmlns="http://www.w3.org/1998/Math/MathML">'],
+        [/<\/oMath>/gi, '</math>'],
+        [/<r>/gi, '<mi>'],
+        [/<\/r>/gi, '</mi>'],
+        [/<t>/gi, ''],
+        [/<\/t>/gi, ''],
+        [/<f>/gi, '<mfrac>'],
+        [/<\/f>/gi, '</mfrac>'],
+        [/<num>/gi, '<mrow>'],
+        [/<\/num>/gi, '</mrow>'],
+        [/<den>/gi, '<mrow>'],
+        [/<\/den>/gi, '</mrow>'],
+        [/<sup>/gi, '<msup><mrow>'],
+        [/<\/sup>/gi, '</mrow></msup>'],
+        [/<sub>/gi, '<msub><mrow>'],
+        [/<\/sub>/gi, '</mrow></msub>'],
+        [/<rad>/gi, '<msqrt>'],
+        [/<\/rad>/gi, '</msqrt>'],
+        [/<e>/gi, '<mrow>'],
+        [/<\/e>/gi, '</mrow>'],
+        // Remove elements we don't map
+        [/<rPr>[\s\S]*?<\/rPr>/gi, ''],
+        [/<ctrlPr>[\s\S]*?<\/ctrlPr>/gi, ''],
+        [/<w_[^>]*>[\s\S]*?<\/w_[^>]*>/gi, ''],
+        [/<[^>]*\/>/gi, ''], // Self-closing tags
+    ];
+    for (const [pattern, replacement] of mappings) {
+        xml = xml.replace(pattern, replacement);
+    }
+    // Clean up any remaining unrecognized tags
+    xml = xml.replace(/<[a-zA-Z][^>]*>/g, '').replace(/<\/[a-zA-Z]+>/g, '');
+    // Wrap in math if not already
+    if (!xml.includes('<math')) {
+        xml = `<math xmlns="http://www.w3.org/1998/Math/MathML">${xml}</math>`;
+    }
+    return xml;
+}
+/**
+ * Get equation summary from Word document
+ */
+export async function getWordEquationStats(docxPath) {
+    const result = await extractEquationsFromWord(docxPath);
+    if (!result.success) {
+        return { count: 0, display: 0, inline: 0, converted: 0, error: result.error };
+    }
+    const display = result.equations.filter(e => e.type === 'display').length;
+    const inline = result.equations.filter(e => e.type === 'inline').length;
+    const converted = result.equations.filter(e => e.latex).length;
+    return {
+        count: result.equations.length,
+        display,
+        inline,
+        converted,
+    };
+}
+//# sourceMappingURL=equations.js.map

package/dist/lib/equations.js.map

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package/dist/lib/errors.d.ts

@@ -0,0 +1,60 @@
+/**
+ * Error handling utilities with actionable suggestions
+ */
+interface BuildContext {
+    bibPath?: string;
+    format?: string;
+}
+/**
+ * Format an error message with optional suggestions
+ * @param message - Main error message
+ * @param suggestions - Actionable suggestions
+ * @returns Formatted error string
+ */
+export declare function formatError(message: string, suggestions?: string[]): string;
+/**
+ * Get actionable suggestions for file not found errors
+ * @param filePath - The file path that wasn't found
+ * @returns Array of suggestions
+ */
+export declare function getFileNotFoundSuggestions(filePath: string): string[];
+/**
+ * Get actionable suggestions for dependency errors
+ * @param dependency - The missing dependency
+ * @returns Array of suggestions
+ */
+export declare function getDependencySuggestions(dependency: string): string[];
+/**
+ * Get actionable suggestions for configuration errors
+ * @param field - The problematic config field
+ * @param issue - What's wrong with it
+ * @returns Array of suggestions
+ */
+export declare function getConfigSuggestions(field: string, issue: string): string[];
+/**
+ * Get suggestions for comment/annotation errors
+ * @param issue - The issue type
+ * @returns Array of suggestions
+ */
+export declare function getAnnotationSuggestions(issue: string): string[];
+/**
+ * Get suggestions for build errors
+ * @param issue - The build issue
+ * @param context - Additional context
+ * @returns Array of suggestions
+ */
+export declare function getBuildSuggestions(issue: string, context?: BuildContext): string[];
+/**
+ * Print error and exit
+ * @param message - Error message
+ * @param suggestions - Suggestions
+ */
+export declare function exitWithError(message: string, suggestions?: string[]): never;
+/**
+ * Validate file exists with helpful error
+ * @param filePath - File to check
+ * @param fileType - Type description for error message
+ */
+export declare function requireFile(filePath: string, fileType?: string): void;
+export {};
+//# sourceMappingURL=errors.d.ts.map

package/dist/lib/errors.d.ts.map

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