docrev 0.11.3 → 0.12.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (193) hide show
  1. package/CHANGELOG.md +22 -0
  2. package/LICENSE +21 -0
  3. package/dist/bin/rev.js +29 -21
  4. package/dist/bin/rev.js.map +1 -1
  5. package/dist/lib/build.d.ts +43 -0
  6. package/dist/lib/build.d.ts.map +1 -1
  7. package/dist/lib/build.js +175 -5
  8. package/dist/lib/build.js.map +1 -1
  9. package/dist/lib/commands/build.d.ts.map +1 -1
  10. package/dist/lib/commands/build.js +39 -125
  11. package/dist/lib/commands/build.js.map +1 -1
  12. package/dist/lib/commands/comments.js +3 -3
  13. package/dist/lib/commands/comments.js.map +1 -1
  14. package/dist/lib/commands/context.d.ts +12 -1
  15. package/dist/lib/commands/context.d.ts.map +1 -1
  16. package/dist/lib/commands/context.js +34 -1
  17. package/dist/lib/commands/context.js.map +1 -1
  18. package/dist/lib/commands/merge-resolve.js +1 -1
  19. package/dist/lib/commands/merge-resolve.js.map +1 -1
  20. package/dist/lib/commands/quality.js +2 -2
  21. package/dist/lib/commands/quality.js.map +1 -1
  22. package/dist/lib/commands/sections.js +1 -1
  23. package/dist/lib/commands/sections.js.map +1 -1
  24. package/dist/lib/commands/text-ops.js +1 -1
  25. package/dist/lib/commands/text-ops.js.map +1 -1
  26. package/dist/lib/commands/utilities.d.ts.map +1 -1
  27. package/dist/lib/commands/utilities.js +5 -2
  28. package/dist/lib/commands/utilities.js.map +1 -1
  29. package/dist/lib/commands/word-tools.js +2 -2
  30. package/dist/lib/commands/word-tools.js.map +1 -1
  31. package/dist/lib/crossref.d.ts.map +1 -1
  32. package/dist/lib/crossref.js +12 -41
  33. package/dist/lib/crossref.js.map +1 -1
  34. package/dist/lib/csl.d.ts.map +1 -1
  35. package/dist/lib/csl.js +14 -22
  36. package/dist/lib/csl.js.map +1 -1
  37. package/dist/lib/diff-engine.js +1 -1
  38. package/dist/lib/diff-engine.js.map +1 -1
  39. package/dist/lib/equations.d.ts.map +1 -1
  40. package/dist/lib/equations.js +12 -3
  41. package/dist/lib/equations.js.map +1 -1
  42. package/dist/lib/errors.d.ts.map +1 -1
  43. package/dist/lib/errors.js +1 -30
  44. package/dist/lib/errors.js.map +1 -1
  45. package/dist/lib/image-registry.d.ts.map +1 -1
  46. package/dist/lib/image-registry.js +4 -0
  47. package/dist/lib/image-registry.js.map +1 -1
  48. package/dist/lib/import.d.ts +1 -1
  49. package/dist/lib/import.d.ts.map +1 -1
  50. package/dist/lib/import.js +1 -1
  51. package/dist/lib/import.js.map +1 -1
  52. package/dist/lib/input.d.ts +0 -11
  53. package/dist/lib/input.d.ts.map +1 -1
  54. package/dist/lib/input.js +0 -35
  55. package/dist/lib/input.js.map +1 -1
  56. package/dist/lib/merge.d.ts.map +1 -1
  57. package/dist/lib/merge.js +9 -1
  58. package/dist/lib/merge.js.map +1 -1
  59. package/dist/lib/ooxml.d.ts +22 -0
  60. package/dist/lib/ooxml.d.ts.map +1 -1
  61. package/dist/lib/ooxml.js +130 -0
  62. package/dist/lib/ooxml.js.map +1 -1
  63. package/dist/lib/orcid.d.ts.map +1 -1
  64. package/dist/lib/orcid.js +16 -7
  65. package/dist/lib/orcid.js.map +1 -1
  66. package/dist/lib/plugins.d.ts.map +1 -1
  67. package/dist/lib/plugins.js +8 -4
  68. package/dist/lib/plugins.js.map +1 -1
  69. package/dist/lib/protect-restore.d.ts.map +1 -1
  70. package/dist/lib/protect-restore.js +7 -5
  71. package/dist/lib/protect-restore.js.map +1 -1
  72. package/dist/lib/restore-references.d.ts.map +1 -1
  73. package/dist/lib/restore-references.js +25 -3
  74. package/dist/lib/restore-references.js.map +1 -1
  75. package/dist/lib/schema.d.ts.map +1 -1
  76. package/dist/lib/schema.js +1 -19
  77. package/dist/lib/schema.js.map +1 -1
  78. package/dist/lib/slides.js +1 -1
  79. package/dist/lib/slides.js.map +1 -1
  80. package/dist/lib/spelling.js +1 -1
  81. package/dist/lib/spelling.js.map +1 -1
  82. package/dist/lib/tui.js +0 -1
  83. package/dist/lib/tui.js.map +1 -1
  84. package/dist/lib/utils.d.ts +14 -0
  85. package/dist/lib/utils.d.ts.map +1 -1
  86. package/dist/lib/utils.js +41 -0
  87. package/dist/lib/utils.js.map +1 -1
  88. package/dist/lib/word-extraction.d.ts +5 -5
  89. package/dist/lib/word-extraction.d.ts.map +1 -1
  90. package/dist/lib/word-extraction.js +25 -106
  91. package/dist/lib/word-extraction.js.map +1 -1
  92. package/dist/lib/word.d.ts +14 -38
  93. package/dist/lib/word.d.ts.map +1 -1
  94. package/dist/lib/word.js +24 -179
  95. package/dist/lib/word.js.map +1 -1
  96. package/dist/lib/wordcomments.d.ts.map +1 -1
  97. package/dist/lib/wordcomments.js +9 -7
  98. package/dist/lib/wordcomments.js.map +1 -1
  99. package/package.json +17 -6
  100. package/.gitattributes +0 -1
  101. package/PLAN-tables-and-postprocess.md +0 -850
  102. package/bin/rev.ts +0 -145
  103. package/docs-src/build.py +0 -113
  104. package/docs-src/extra.css +0 -208
  105. package/docs-src/md-to-html.lua +0 -6
  106. package/docs-src/template.html +0 -116
  107. package/eslint.config.js +0 -27
  108. package/lib/anchor-match.ts +0 -307
  109. package/lib/annotations.ts +0 -695
  110. package/lib/build.ts +0 -2047
  111. package/lib/citations.ts +0 -160
  112. package/lib/commands/build.ts +0 -885
  113. package/lib/commands/citations.ts +0 -515
  114. package/lib/commands/comments.ts +0 -1077
  115. package/lib/commands/context.ts +0 -185
  116. package/lib/commands/core.ts +0 -328
  117. package/lib/commands/doi.ts +0 -451
  118. package/lib/commands/file-ops.ts +0 -372
  119. package/lib/commands/history.ts +0 -320
  120. package/lib/commands/index.ts +0 -87
  121. package/lib/commands/init.ts +0 -259
  122. package/lib/commands/merge-resolve.ts +0 -378
  123. package/lib/commands/preview.ts +0 -178
  124. package/lib/commands/project-info.ts +0 -244
  125. package/lib/commands/quality.ts +0 -517
  126. package/lib/commands/response.ts +0 -454
  127. package/lib/commands/section-boundaries.ts +0 -82
  128. package/lib/commands/sections.ts +0 -451
  129. package/lib/commands/sync.ts +0 -689
  130. package/lib/commands/text-ops.ts +0 -449
  131. package/lib/commands/utilities.ts +0 -448
  132. package/lib/commands/verify-anchors.ts +0 -272
  133. package/lib/commands/word-tools.ts +0 -340
  134. package/lib/comment-realign.ts +0 -99
  135. package/lib/config.ts +0 -84
  136. package/lib/crossref.ts +0 -781
  137. package/lib/csl.ts +0 -191
  138. package/lib/dependencies.ts +0 -132
  139. package/lib/diff-engine.ts +0 -465
  140. package/lib/doi-cache.ts +0 -115
  141. package/lib/doi.ts +0 -879
  142. package/lib/equations.ts +0 -506
  143. package/lib/errors.ts +0 -350
  144. package/lib/format.ts +0 -541
  145. package/lib/git.ts +0 -326
  146. package/lib/grammar.ts +0 -303
  147. package/lib/image-registry.ts +0 -180
  148. package/lib/import.ts +0 -932
  149. package/lib/input.ts +0 -174
  150. package/lib/journals.ts +0 -543
  151. package/lib/macro-filter.lua +0 -201
  152. package/lib/macros.ts +0 -273
  153. package/lib/merge.ts +0 -633
  154. package/lib/ooxml.ts +0 -768
  155. package/lib/orcid.ts +0 -144
  156. package/lib/pdf-comments.ts +0 -263
  157. package/lib/pdf-import.ts +0 -524
  158. package/lib/plugins.ts +0 -362
  159. package/lib/postprocess.ts +0 -188
  160. package/lib/pptx-color-filter.lua +0 -37
  161. package/lib/pptx-template.ts +0 -469
  162. package/lib/pptx-themes/academic.pptx +0 -0
  163. package/lib/pptx-themes/corporate.pptx +0 -0
  164. package/lib/pptx-themes/dark.pptx +0 -0
  165. package/lib/pptx-themes/default.pptx +0 -0
  166. package/lib/pptx-themes/minimal.pptx +0 -0
  167. package/lib/pptx-themes/plant.pptx +0 -0
  168. package/lib/pptx-themes.ts +0 -483
  169. package/lib/protect-restore.ts +0 -520
  170. package/lib/rate-limiter.ts +0 -127
  171. package/lib/response.ts +0 -200
  172. package/lib/restore-references.ts +0 -240
  173. package/lib/review.ts +0 -327
  174. package/lib/schema.ts +0 -494
  175. package/lib/scientific-words.ts +0 -73
  176. package/lib/sections.ts +0 -428
  177. package/lib/slides.ts +0 -756
  178. package/lib/spelling.ts +0 -334
  179. package/lib/templates.ts +0 -526
  180. package/lib/themes.ts +0 -742
  181. package/lib/trackchanges.ts +0 -166
  182. package/lib/tui.ts +0 -450
  183. package/lib/types.ts +0 -546
  184. package/lib/undo.ts +0 -250
  185. package/lib/utils.ts +0 -69
  186. package/lib/variables.ts +0 -179
  187. package/lib/word-extraction.ts +0 -525
  188. package/lib/word.ts +0 -526
  189. package/lib/wordcomments.ts +0 -789
  190. package/mkdocs.yml +0 -64
  191. package/scripts/postbuild.js +0 -47
  192. package/tsconfig.json +0 -26
  193. package/types/index.d.ts +0 -531
package/lib/types.ts DELETED
@@ -1,546 +0,0 @@
1
- /**
2
- * Shared TypeScript type definitions for docrev
3
- * Extracted from types/index.d.ts for internal use
4
- */
5
-
6
- // ============================================
7
- // Annotations
8
- // ============================================
9
-
10
- export interface Annotation {
11
- type: 'insert' | 'delete' | 'substitute' | 'comment' | 'highlight';
12
- match: string;
13
- content: string;
14
- replacement?: string;
15
- author?: string;
16
- position: number;
17
- line: number;
18
- before?: string;
19
- after?: string;
20
- resolved?: boolean;
21
- }
22
-
23
- export interface Comment extends Annotation {
24
- type: 'comment';
25
- author: string;
26
- resolved: boolean;
27
- }
28
-
29
- export interface AnnotationCounts {
30
- inserts: number;
31
- deletes: number;
32
- substitutes: number;
33
- comments: number;
34
- total: number;
35
- }
36
-
37
- export interface StripOptions {
38
- keepComments?: boolean;
39
- }
40
-
41
- export interface CommentFilterOptions {
42
- pendingOnly?: boolean;
43
- resolvedOnly?: boolean;
44
- }
45
-
46
- // ============================================
47
- // Build
48
- // ============================================
49
-
50
- export interface Author {
51
- name: string;
52
- affiliation?: string;
53
- affiliations?: string[];
54
- corresponding?: boolean;
55
- email?: string;
56
- orcid?: string;
57
- }
58
-
59
- export interface CrossrefConfig {
60
- figureTitle?: string;
61
- tableTitle?: string;
62
- figPrefix?: string | string[];
63
- tblPrefix?: string | string[];
64
- }
65
-
66
- export interface PdfConfig {
67
- documentclass?: string;
68
- fontsize?: string;
69
- geometry?: string;
70
- linestretch?: number;
71
- toc?: boolean;
72
- /**
73
- * LaTeX engine to use for PDF output. One of `pdflatex` (default),
74
- * `xelatex`, `lualatex`, `tectonic`, etc. xelatex/lualatex are required
75
- * for native UTF-8 rendering of diacritics in author names, place
76
- * names, and species epithets.
77
- */
78
- engine?: string;
79
- /** Roman/serif main font (xelatex/lualatex only — uses fontspec). */
80
- mainfont?: string;
81
- /** Sans-serif font (xelatex/lualatex only). */
82
- sansfont?: string;
83
- /** Monospace font (xelatex/lualatex only). */
84
- monofont?: string;
85
- numbersections?: boolean;
86
- template?: string;
87
- headerIncludes?: string;
88
- }
89
-
90
- export interface DocxConfig {
91
- reference?: string;
92
- keepComments?: boolean;
93
- toc?: boolean;
94
- }
95
-
96
- export interface BuildConfig {
97
- title?: string;
98
- authors?: Author[];
99
- sections?: string[];
100
- bibliography?: string;
101
- csl?: string;
102
- crossref?: CrossrefConfig;
103
- pdf?: PdfConfig;
104
- docx?: DocxConfig;
105
- postprocess?: { [key: string]: string };
106
- _configPath?: string;
107
- [key: string]: unknown;
108
- }
109
-
110
- export interface BuildResult {
111
- format: string;
112
- output: string;
113
- success: boolean;
114
- error?: string;
115
- }
116
-
117
- // ============================================
118
- // Citations
119
- // ============================================
120
-
121
- export interface Citation {
122
- key: string;
123
- line: number;
124
- file: string;
125
- }
126
-
127
- export interface CitationValidation {
128
- valid: Citation[];
129
- missing: Citation[];
130
- unused: string[];
131
- duplicates: Array<{ key: string; count: number; locations: Citation[] }>;
132
- }
133
-
134
- export interface CitationStats {
135
- totalCitations: number;
136
- uniqueCited: number;
137
- valid: number;
138
- missing: number;
139
- missingKeys: string[];
140
- bibEntries: number;
141
- unused: number;
142
- unusedKeys: string[];
143
- }
144
-
145
- // ============================================
146
- // Crossref
147
- // ============================================
148
-
149
- export interface RefNumber {
150
- num: number;
151
- isSupp: boolean;
152
- suffix: string | null;
153
- }
154
-
155
- export interface HardcodedRef {
156
- type: 'fig' | 'tbl' | 'eq';
157
- match: string;
158
- numbers: RefNumber[];
159
- position: number;
160
- }
161
-
162
- export interface DynamicRef {
163
- type: 'fig' | 'tbl' | 'eq';
164
- label: string;
165
- match: string;
166
- position: number;
167
- }
168
-
169
- export interface FigureInfo {
170
- label: string;
171
- num: number;
172
- isSupp: boolean;
173
- file: string;
174
- }
175
-
176
- export interface Registry {
177
- figures: Map<string, FigureInfo>;
178
- tables: Map<string, FigureInfo>;
179
- equations: Map<string, FigureInfo>;
180
- byNumber: {
181
- fig: Map<number, string>;
182
- figS: Map<number, string>;
183
- tbl: Map<number, string>;
184
- tblS: Map<number, string>;
185
- eq: Map<number, string>;
186
- };
187
- }
188
-
189
- export interface RefStatus {
190
- dynamic: DynamicRef[];
191
- hardcoded: HardcodedRef[];
192
- anchors: { figures: number; tables: number; equations: number };
193
- }
194
-
195
- export interface ConversionResult {
196
- converted: string;
197
- conversions: Array<{ from: string; to: string }>;
198
- warnings: string[];
199
- }
200
-
201
- // ============================================
202
- // DOI
203
- // ============================================
204
-
205
- export interface BibEntry {
206
- key: string;
207
- type: string;
208
- doi: string | null;
209
- title: string;
210
- authorRaw: string;
211
- year: number | null;
212
- journal: string;
213
- skip: boolean;
214
- expectDoi: boolean;
215
- noDoi: boolean;
216
- line: number;
217
- }
218
-
219
- export interface DoiCheckResult {
220
- valid: boolean;
221
- source?: 'crossref' | 'datacite' | 'doi.org';
222
- /**
223
- * True when the registry could not be reached (network error, timeout, or
224
- * 5xx) — the DOI's validity is unknown, distinct from a definitive "not
225
- * found". Callers must not report an unreachable DOI as invalid.
226
- */
227
- unreachable?: boolean;
228
- metadata?: {
229
- title: string;
230
- authors: string[];
231
- year: number;
232
- journal: string;
233
- type?: string;
234
- };
235
- error?: string;
236
- }
237
-
238
- export interface BibtexFetchResult {
239
- success: boolean;
240
- bibtex?: string;
241
- error?: string;
242
- }
243
-
244
- export interface DoiLookupResult {
245
- found: boolean;
246
- doi?: string;
247
- confidence?: 'low' | 'medium' | 'high';
248
- score?: number;
249
- metadata?: {
250
- title: string;
251
- authors: string[];
252
- year: number;
253
- journal: string;
254
- };
255
- alternatives?: Array<{
256
- doi: string;
257
- title: string;
258
- score: number;
259
- }>;
260
- error?: string;
261
- }
262
-
263
- export interface BibCheckResult {
264
- entries: Array<BibEntry & { status: string; message?: string; metadata?: object }>;
265
- valid: number;
266
- invalid: number;
267
- /** DOIs whose registry could not be reached (network/timeout) — not invalid. */
268
- unreachable: number;
269
- missing: number;
270
- skipped: number;
271
- }
272
-
273
- // ============================================
274
- // Equations
275
- // ============================================
276
-
277
- export interface Equation {
278
- type: 'inline' | 'display';
279
- content: string;
280
- line: number;
281
- file: string;
282
- }
283
-
284
- export interface EquationStats {
285
- total: number;
286
- display: number;
287
- inline: number;
288
- byFile: Array<{ file: string; display: number; inline: number }>;
289
- }
290
-
291
- export interface WordEquationResult {
292
- success: boolean;
293
- equations: Array<{
294
- type: 'inline' | 'display' | 'unknown';
295
- latex: string | null;
296
- position: number;
297
- line?: number;
298
- raw?: string;
299
- error?: string;
300
- }>;
301
- error?: string;
302
- }
303
-
304
- // ============================================
305
- // Git
306
- // ============================================
307
-
308
- export interface FileChange {
309
- added: number;
310
- removed: number;
311
- changes: Array<{ added?: boolean; removed?: boolean; value: string }>;
312
- }
313
-
314
- export interface CommitInfo {
315
- hash: string;
316
- date: string;
317
- author: string;
318
- message: string;
319
- }
320
-
321
- export interface ChangedFile {
322
- file: string;
323
- status: 'added' | 'deleted' | 'modified';
324
- }
325
-
326
- export interface BlameEntry {
327
- line: number;
328
- author: string;
329
- date: string;
330
- hash: string;
331
- content: string;
332
- }
333
-
334
- export interface AuthorStats {
335
- lines: number;
336
- percentage: number;
337
- }
338
-
339
- export interface ContributorStats {
340
- lines: number;
341
- files: number;
342
- }
343
-
344
- // ============================================
345
- // Journals
346
- // ============================================
347
-
348
- export interface JournalRequirements {
349
- wordLimit?: { main?: number; abstract?: number };
350
- references?: { max?: number; doiRequired?: boolean };
351
- figures?: { max?: number };
352
- tables?: { max?: number };
353
- sections?: string[];
354
- }
355
-
356
- export interface JournalFormatting {
357
- csl?: string;
358
- pdf?: {
359
- documentclass?: string;
360
- fontsize?: string;
361
- geometry?: string;
362
- linestretch?: number;
363
- template?: string;
364
- numbersections?: boolean;
365
- engine?: string;
366
- mainfont?: string;
367
- sansfont?: string;
368
- monofont?: string;
369
- };
370
- docx?: {
371
- reference?: string;
372
- };
373
- crossref?: {
374
- figPrefix?: string | string[];
375
- tblPrefix?: string | string[];
376
- };
377
- }
378
-
379
- export interface JournalProfile {
380
- name: string;
381
- url: string;
382
- requirements: JournalRequirements;
383
- formatting?: JournalFormatting;
384
- }
385
-
386
- export interface ValidationResult {
387
- journal: string;
388
- valid: boolean;
389
- wordCount: { main: number; abstract: number; limit: { main: number; abstract: number } };
390
- figures: { count: number; max: number };
391
- tables: { count: number; max: number };
392
- references: { count: number; max: number };
393
- sections: { found: string[]; missing: string[]; required: string[] };
394
- errors: string[];
395
- warnings: string[];
396
- }
397
-
398
- // ============================================
399
- // Merge
400
- // ============================================
401
-
402
- export interface ReviewerChange {
403
- reviewer: string;
404
- type: 'insert' | 'delete' | 'replace';
405
- start: number;
406
- end: number;
407
- oldText: string;
408
- newText: string;
409
- }
410
-
411
- export interface Conflict {
412
- id: string;
413
- start: number;
414
- end: number;
415
- original: string;
416
- changes: ReviewerChange[];
417
- section?: string;
418
- line?: number;
419
- resolved: string | null;
420
- }
421
-
422
- export interface MergeResult {
423
- merged: string;
424
- conflicts: Conflict[];
425
- stats: {
426
- reviewers: number;
427
- totalChanges: number;
428
- nonConflicting: number;
429
- conflicts: number;
430
- comments: number;
431
- };
432
- originalText: string;
433
- }
434
-
435
- // ============================================
436
- // Sections
437
- // ============================================
438
-
439
- export interface SectionConfig {
440
- header: string;
441
- aliases?: string[];
442
- order?: number;
443
- }
444
-
445
- export interface SectionsConfig {
446
- version: number;
447
- description?: string;
448
- sections: Record<string, SectionConfig>;
449
- }
450
-
451
- export interface ExtractedSection {
452
- file: string;
453
- header: string;
454
- content: string;
455
- matched: boolean;
456
- }
457
-
458
- // ============================================
459
- // Word
460
- // ============================================
461
-
462
- export interface WordComment {
463
- id: string;
464
- author: string;
465
- date?: string;
466
- text: string;
467
- }
468
-
469
- export interface WordMetadata {
470
- title?: string;
471
- author?: string;
472
- created?: string;
473
- modified?: string;
474
- }
475
-
476
- export interface CommentAnchor {
477
- text: string;
478
- context: string;
479
- }
480
-
481
- export interface WordContent {
482
- text: string;
483
- html: string;
484
- }
485
-
486
- export interface TrackChangesResult {
487
- hasTrackChanges: boolean;
488
- content: string | null;
489
- stats: { insertions: number; deletions: number };
490
- }
491
-
492
- // ============================================
493
- // Spelling
494
- // ============================================
495
-
496
- export interface SpellingIssue {
497
- word: string;
498
- line: number;
499
- column: number;
500
- file?: string;
501
- suggestions?: string[];
502
- }
503
-
504
- export interface SpellingResult {
505
- misspelled: SpellingIssue[];
506
- possibleNames: SpellingIssue[];
507
- }
508
-
509
- // ============================================
510
- // Config
511
- // ============================================
512
-
513
- export interface UserConfig {
514
- userName?: string;
515
- defaultSections?: string[];
516
- }
517
-
518
- // ============================================
519
- // DOI Cache
520
- // ============================================
521
-
522
- export interface DoiCacheEntry {
523
- result: DoiCheckResult | DoiLookupResult;
524
- timestamp: number;
525
- }
526
-
527
- export interface DoiCache {
528
- entries: Record<string, DoiCacheEntry>;
529
- version: number;
530
- }
531
-
532
- export interface DoiCacheStats {
533
- size: number;
534
- path: string;
535
- }
536
-
537
- // ============================================
538
- // Errors
539
- // ============================================
540
-
541
- export interface ErrorInfo {
542
- code: string;
543
- message: string;
544
- help?: string;
545
- cause?: Error;
546
- }