docrev 0.11.3 → 0.12.0

package/lib/commands/sections.ts

@@ -1,451 +0,0 @@
-/**
- * Section commands: import, extract, split
- *
- * Commands for importing Word documents and splitting section files.
- * Sync and merge commands are in sync.ts and merge-resolve.ts respectively.
- */
-
-import {
-  chalk,
-  fs,
-  path,
-  countAnnotations,
-  resolveSectionsConfig,
-  splitAnnotatedPaper,
-} from './context.js';
-import type { Command } from 'commander';
-
-interface DetectedSection {
-  header: string;
-  content: string;
-  file: string;
-}
-
-interface ImportStats {
-  insertions: number;
-  deletions: number;
-  substitutions: number;
-  comments: number;
-  total: number;
-}
-
-interface BootstrapOptions {
-  output: string;
-  dryRun?: boolean;
-}
-
-interface ImportOptions {
-  output?: string;
-  author?: string;
-  dryRun?: boolean;
-}
-
-interface ExtractOptions {
-  output?: string;
-}
-
-interface SplitOptions {
-  config: string;
-  dir: string;
-  dryRun?: boolean;
-}
-
-/**
- * Detect sections from Word document text
- * Looks for common academic paper section headers
- */
-function detectSectionsFromWord(text: string): DetectedSection[] {
-  const lines = text.split('\n');
-  const sections: DetectedSection[] = [];
-
-  const headerPatterns = [
-    /^(Abstract|Summary)$/i,
-    /^(Introduction|Background)$/i,
-    /^(Methods?|Materials?\s*(and|&)\s*Methods?|Methodology|Experimental\s*Methods?)$/i,
-    /^(Results?)$/i,
-    /^(Results?\s*(and|&)\s*Discussion)$/i,
-    /^(Discussion)$/i,
-    /^(Conclusions?|Summary\s*(and|&)?\s*Conclusions?)$/i,
-    /^(Acknowledgements?|Acknowledgments?)$/i,
-    /^(References|Bibliography|Literature\s*Cited|Works\s*Cited)$/i,
-    /^(Appendix|Appendices|Supplementary\s*(Materials?|Information)?|Supporting\s*Information)$/i,
-    /^(Literature\s*Review|Related\s*Work|Previous\s*Work)$/i,
-    /^(Study\s*Area|Study\s*Site|Site\s*Description)$/i,
-    /^(Data\s*Analysis|Statistical\s*Analysis|Data\s*Collection)$/i,
-    /^(Theoretical\s*Framework|Conceptual\s*Framework)$/i,
-    /^(Case\s*Study|Case\s*Studies)$/i,
-    /^(Limitations?)$/i,
-    /^(Future\s*Work|Future\s*Directions?)$/i,
-    /^(Funding|Author\s*Contributions?|Conflict\s*of\s*Interest|Data\s*Availability)$/i,
-  ];
-
-  const numberedHeaderPattern = /^(\d+\.?\s+)(Abstract|Introduction|Background|Methods?|Materials|Results?|Discussion|Conclusions?|References|Acknowledgements?|Appendix)/i;
-
-  let currentSection: string | null = null;
-  let currentContent: string[] = [];
-  let preambleContent: string[] = [];
-
-  for (const line of lines) {
-    const trimmed = line.trim();
-    if (!trimmed) {
-      if (currentSection) {
-        currentContent.push(line);
-      } else {
-        preambleContent.push(line);
-      }
-      continue;
-    }
-
-    let isHeader = false;
-    let headerText = trimmed;
-
-    for (const pattern of headerPatterns) {
-      if (pattern.test(trimmed)) {
-        isHeader = true;
-        break;
-      }
-    }
-
-    if (!isHeader) {
-      const match = trimmed.match(numberedHeaderPattern);
-      if (match) {
-        isHeader = true;
-        headerText = trimmed.replace(/^\d+\.?\s+/, '');
-      }
-    }
-
-    if (isHeader) {
-      if (currentSection) {
-        sections.push({
-          header: currentSection,
-          content: currentContent.join('\n'),
-          file: headerToFilename(currentSection),
-        });
-      } else if (preambleContent.some(l => l.trim())) {
-        sections.push({
-          header: 'Preamble',
-          content: preambleContent.join('\n'),
-          file: 'preamble.md',
-        });
-      }
-      currentSection = headerText;
-      currentContent = [];
-    } else if (currentSection) {
-      currentContent.push(line);
-    } else {
-      preambleContent.push(line);
-    }
-  }
-
-  if (currentSection) {
-    sections.push({
-      header: currentSection,
-      content: currentContent.join('\n'),
-      file: headerToFilename(currentSection),
-    });
-  }
-
-  if (sections.length === 0) {
-    const allContent = [...preambleContent, ...currentContent].join('\n');
-    if (allContent.trim()) {
-      sections.push({
-        header: 'Content',
-        content: allContent,
-        file: 'content.md',
-      });
-    }
-  }
-
-  return sections;
-}
-
-/**
- * Convert a section header to a filename
- */
-function headerToFilename(header: string): string {
-  return header
-    .toLowerCase()
-    .replace(/[^a-z0-9]+/g, '-')
-    .replace(/^-|-$/g, '')
-    .slice(0, 30) + '.md';
-}
-
-/**
- * Bootstrap a new project from a Word document
- */
-async function bootstrapFromWord(docx: string, options: BootstrapOptions): Promise<void> {
-  const outputDir = path.resolve(options.output);
-
-  console.log(chalk.cyan(`Bootstrapping project from ${path.basename(docx)}...\n`));
-
-  try {
-    const { extractTextFromWord } = await import('../word.js');
-    const { default: YAML } = await import('yaml');
-
-    const text = await extractTextFromWord(docx);
-
-    const sections = detectSectionsFromWord(text);
-
-    if (sections.length === 0) {
-      console.error(chalk.yellow('No sections detected. Creating single content.md file.'));
-      sections.push({ header: 'Content', content: text, file: 'content.md' });
-    }
-
-    console.log(chalk.green(`Detected ${sections.length} section(s):\n`));
-
-    if (!fs.existsSync(outputDir)) {
-      fs.mkdirSync(outputDir, { recursive: true });
-    }
-
-    const sectionFiles: string[] = [];
-    for (const section of sections) {
-      const filePath = path.join(outputDir, section.file);
-      const content = `# ${section.header}\n\n${section.content.trim()}\n`;
-
-      console.log(`  ${chalk.bold(section.file)} - "${section.header}" (${section.content.split('\n').length} lines)`);
-
-      if (!options.dryRun) {
-        fs.writeFileSync(filePath, content, 'utf-8');
-      }
-      sectionFiles.push(section.file);
-    }
-
-    const docxName = path.basename(docx, '.docx');
-    const title = docxName.replace(/[-_]/g, ' ').replace(/\b\w/g, (c) => c.toUpperCase());
-
-    const config = {
-      title: title,
-      authors: [],
-      sections: sectionFiles,
-      bibliography: null,
-      crossref: {
-        figureTitle: 'Figure',
-        tableTitle: 'Table',
-        figPrefix: ['Fig.', 'Figs.'],
-        tblPrefix: ['Table', 'Tables'],
-      },
-      pdf: {
-        documentclass: 'article',
-        fontsize: '12pt',
-        geometry: 'margin=1in',
-        linestretch: 1.5,
-      },
-      docx: {
-        keepComments: true,
-      },
-    };
-
-    const configPath = path.join(outputDir, 'rev.yaml');
-    console.log(`\n  ${chalk.bold('rev.yaml')} - project configuration`);
-
-    if (!options.dryRun) {
-      fs.writeFileSync(configPath, YAML.stringify(config), 'utf-8');
-    }
-
-    const figuresDir = path.join(outputDir, 'figures');
-    if (!fs.existsSync(figuresDir) && !options.dryRun) {
-      fs.mkdirSync(figuresDir, { recursive: true });
-      console.log(`  ${chalk.dim('figures/')} - image directory`);
-    }
-
-    if (options.dryRun) {
-      console.log(chalk.yellow('\n(Dry run - no files written)'));
-    } else {
-      console.log(chalk.green('\nProject created!'));
-      console.log(chalk.cyan('\nNext steps:'));
-      if (outputDir !== process.cwd()) {
-        console.log(chalk.dim(`  cd ${path.relative(process.cwd(), outputDir) || '.'}`));
-      }
-      console.log(chalk.dim('  # Edit rev.yaml to add authors and adjust settings'));
-      console.log(chalk.dim('  # Review and clean up section files'));
-      console.log(chalk.dim('  rev build          # Build PDF and DOCX'));
-    }
-  } catch (err) {
-    const error = err as Error;
-    console.error(chalk.red(`Error: ${error.message}`));
-    if (process.env.DEBUG) console.error(error.stack);
-    process.exit(1);
-  }
-}
-
-/**
- * Register section commands with the program
- */
-export function register(program: Command): void {
-  // ==========================================================================
-  // IMPORT command - Import from Word (bootstrap or diff mode)
-  // ==========================================================================
-
-  program
-    .command('import')
-    .description('Import from Word: creates sections from scratch, or diffs against existing MD')
-    .argument('<docx>', 'Word document')
-    .argument('[original]', 'Optional: original Markdown file to compare against')
-    .option('-o, --output <dir>', 'Output directory for bootstrap mode', '.')
-    .option('-a, --author <name>', 'Author name for changes (diff mode)', 'Reviewer')
-    .option('--dry-run', 'Preview without saving')
-    .action(async (docx: string, original: string | undefined, options: ImportOptions) => {
-      if (!fs.existsSync(docx)) {
-        console.error(chalk.red(`Error: Word file not found: ${docx}`));
-        process.exit(1);
-      }
-
-      if (!original) {
-        await bootstrapFromWord(docx, options as BootstrapOptions);
-        return;
-      }
-
-      if (!fs.existsSync(original)) {
-        console.error(chalk.red(`Error: Original MD not found: ${original}`));
-        process.exit(1);
-      }
-
-      console.log(chalk.cyan(`Comparing ${path.basename(docx)} against ${path.basename(original)}...`));
-
-      // Warn if pandoc is missing
-      const { hasPandoc: hasPandocImport, getInstallInstructions: getInstallImport } = await import('../dependencies.js');
-      if (!hasPandocImport()) {
-        console.log(chalk.yellow(`\n  Warning: Pandoc not installed. Track changes extracted from XML (formatting may differ).`));
-        console.log(chalk.dim(`  Install for best results: ${getInstallImport('pandoc')}\n`));
-      }
-
-      try {
-        const { importFromWord } = await import('../import.js');
-        const { annotated, stats } = await importFromWord(docx, original, {
-          author: options.author,
-        });
-
-        console.log(chalk.cyan('\nChanges detected:'));
-        if (stats.insertions > 0) console.log(chalk.green(`  + Insertions:    ${stats.insertions}`));
-        if (stats.deletions > 0) console.log(chalk.red(`  - Deletions:     ${stats.deletions}`));
-        if (stats.substitutions > 0) console.log(chalk.yellow(`  ~ Substitutions: ${stats.substitutions}`));
-        if (stats.comments > 0) console.log(chalk.blue(`  # Comments:      ${stats.comments}`));
-
-        if (stats.total === 0) {
-          console.log(chalk.green('\nNo changes detected.'));
-          return;
-        }
-
-        console.log(chalk.dim(`\n  Total: ${stats.total}`));
-
-        if (options.dryRun) {
-          console.log(chalk.cyan('\n--- Preview (first 1000 chars) ---\n'));
-          console.log(annotated.slice(0, 1000));
-          if (annotated.length > 1000) console.log(chalk.dim('\n... (truncated)'));
-          return;
-        }
-
-        const outputPath = options.output || original;
-        fs.writeFileSync(outputPath, annotated, 'utf-8');
-        console.log(chalk.green(`\nSaved annotated version to ${outputPath}`));
-        console.log(chalk.cyan('\nNext steps:'));
-        console.log(`  1. ${chalk.bold('rev review ' + outputPath)}  - Accept/reject track changes`);
-        console.log(`  2. Work with Claude to address comments`);
-        console.log(`  3. ${chalk.bold('rev build docx')}  - Rebuild Word doc`);
-
-      } catch (err) {
-        const error = err as Error;
-        console.error(chalk.red(`Error: ${error.message}`));
-        if (process.env.DEBUG) console.error(error.stack);
-        process.exit(1);
-      }
-    });
-
-  // ==========================================================================
-  // EXTRACT command - Just extract text from Word
-  // ==========================================================================
-
-  program
-    .command('extract')
-    .description('Extract plain text from Word document (no diff)')
-    .argument('<docx>', 'Word document')
-    .option('-o, --output <file>', 'Output file (default: stdout)')
-    .action(async (docx: string, options: ExtractOptions) => {
-      if (!fs.existsSync(docx)) {
-        console.error(chalk.red(`Error: File not found: ${docx}`));
-        process.exit(1);
-      }
-
-      try {
-        const { extractTextFromWord } = await import('../word.js');
-        const text = await extractTextFromWord(docx);
-
-        if (options.output) {
-          fs.writeFileSync(options.output, text, 'utf-8');
-          console.error(chalk.green(`Extracted to ${options.output}`));
-        } else {
-          process.stdout.write(text);
-        }
-      } catch (err) {
-        const error = err as Error;
-        console.error(chalk.red(`Error: ${error.message}`));
-        process.exit(1);
-      }
-    });
-
-  // ==========================================================================
-  // SPLIT command - Split annotated paper.md back to section files
-  // ==========================================================================
-
-  program
-    .command('split')
-    .description('Split annotated paper.md back to section files')
-    .argument('<file>', 'Annotated paper.md file')
-    .option('-c, --config <file>', 'Sections config file', 'sections.yaml')
-    .option('-d, --dir <directory>', 'Output directory for section files', '.')
-    .option('--dry-run', 'Preview without writing files')
-    .action((file: string, options: SplitOptions) => {
-      if (!fs.existsSync(file)) {
-        console.error(chalk.red(`File not found: ${file}`));
-        process.exit(1);
-      }
-
-      const resolved = resolveSectionsConfig(options.dir, options.config);
-      if (!resolved) {
-        console.error(chalk.red(`No section config found in ${path.resolve(options.dir)}`));
-        console.error(chalk.dim('Add a `sections:` list to rev.yaml, or run "rev init" to generate sections.yaml.'));
-        process.exit(1);
-      }
-
-      console.log(chalk.cyan(`Splitting ${file}...`));
-
-      const config = resolved.config;
-      const paperContent = fs.readFileSync(file, 'utf-8');
-      const sections = splitAnnotatedPaper(paperContent, config.sections);
-
-      if (sections.size === 0) {
-        console.error(chalk.yellow('No sections detected.'));
-        console.error(chalk.dim('Check that headers match sections.yaml'));
-        process.exit(1);
-      }
-
-      console.log(chalk.green(`\nFound ${sections.size} sections:\n`));
-
-      for (const [sectionFile, content] of sections) {
-        const outputPath = path.join(options.dir, sectionFile);
-        const lines = content.split('\n').length;
-        const annotations = countAnnotations(content);
-
-        console.log(`  ${chalk.bold(sectionFile)} (${lines} lines)`);
-        if (annotations.total > 0) {
-          const parts: string[] = [];
-          if (annotations.inserts > 0) parts.push(chalk.green(`+${annotations.inserts}`));
-          if (annotations.deletes > 0) parts.push(chalk.red(`-${annotations.deletes}`));
-          if (annotations.substitutes > 0) parts.push(chalk.yellow(`~${annotations.substitutes}`));
-          if (annotations.comments > 0) parts.push(chalk.blue(`#${annotations.comments}`));
-          console.log(chalk.dim(`    Annotations: ${parts.join(' ')}`));
-        }
-
-        if (!options.dryRun) {
-          fs.writeFileSync(outputPath, content, 'utf-8');
-        }
-      }
-
-      if (options.dryRun) {
-        console.log(chalk.yellow('\n(Dry run - no files written)'));
-      } else {
-        console.log(chalk.green('\nSection files updated.'));
-        console.log(chalk.cyan('\nNext: rev review <section.md> for each section'));
-      }
-    });
-}