docrev 0.11.1 → 0.11.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.gitattributes +1 -1
- package/CHANGELOG.md +207 -197
- package/PLAN-tables-and-postprocess.md +850 -850
- package/README.md +433 -433
- package/bin/rev.js +11 -11
- package/bin/rev.ts +145 -145
- package/completions/rev.bash +127 -127
- package/completions/rev.ps1 +210 -210
- package/completions/rev.zsh +207 -207
- package/dist/lib/annotations.d.ts.map +1 -1
- package/dist/lib/annotations.js +28 -0
- package/dist/lib/annotations.js.map +1 -1
- package/dist/lib/build.d.ts +28 -0
- package/dist/lib/build.d.ts.map +1 -1
- package/dist/lib/build.js +81 -4
- package/dist/lib/build.js.map +1 -1
- package/dist/lib/commands/comments.d.ts.map +1 -1
- package/dist/lib/commands/comments.js +58 -28
- package/dist/lib/commands/comments.js.map +1 -1
- package/dist/lib/commands/context.d.ts +1 -0
- package/dist/lib/commands/context.d.ts.map +1 -1
- package/dist/lib/commands/context.js +1 -0
- package/dist/lib/commands/context.js.map +1 -1
- package/dist/lib/commands/core.d.ts.map +1 -1
- package/dist/lib/commands/core.js +25 -8
- package/dist/lib/commands/core.js.map +1 -1
- package/dist/lib/commands/response.js +1 -1
- package/dist/lib/commands/response.js.map +1 -1
- package/dist/lib/commands/utilities.js +164 -164
- package/dist/lib/commands/word-tools.js +8 -8
- package/dist/lib/grammar.js +3 -3
- package/dist/lib/import.d.ts +14 -0
- package/dist/lib/import.d.ts.map +1 -1
- package/dist/lib/import.js +23 -0
- package/dist/lib/import.js.map +1 -1
- package/dist/lib/input.d.ts +67 -0
- package/dist/lib/input.d.ts.map +1 -0
- package/dist/lib/input.js +164 -0
- package/dist/lib/input.js.map +1 -0
- package/dist/lib/macro-filter.lua +201 -201
- package/dist/lib/pdf-comments.js +44 -44
- package/dist/lib/plugins.js +57 -57
- package/dist/lib/pptx-color-filter.lua +37 -37
- package/dist/lib/pptx-themes.js +115 -115
- package/dist/lib/response.d.ts +1 -1
- package/dist/lib/response.d.ts.map +1 -1
- package/dist/lib/response.js +5 -2
- package/dist/lib/response.js.map +1 -1
- package/dist/lib/schema.d.ts.map +1 -1
- package/dist/lib/schema.js +8 -2
- package/dist/lib/schema.js.map +1 -1
- package/dist/lib/spelling.js +2 -2
- package/dist/lib/templates.js +387 -387
- package/dist/lib/themes.js +51 -51
- package/eslint.config.js +27 -27
- package/lib/anchor-match.ts +307 -307
- package/lib/annotations.ts +695 -664
- package/lib/build.ts +2047 -1956
- package/lib/citations.ts +160 -160
- package/lib/commands/build.ts +885 -885
- package/lib/commands/citations.ts +515 -515
- package/lib/commands/comments.ts +1077 -1050
- package/lib/commands/context.ts +185 -176
- package/lib/commands/core.ts +328 -309
- package/lib/commands/doi.ts +451 -451
- package/lib/commands/file-ops.ts +372 -372
- package/lib/commands/history.ts +320 -320
- package/lib/commands/index.ts +87 -87
- package/lib/commands/init.ts +259 -259
- package/lib/commands/merge-resolve.ts +378 -378
- package/lib/commands/preview.ts +178 -178
- package/lib/commands/project-info.ts +244 -244
- package/lib/commands/quality.ts +517 -517
- package/lib/commands/response.ts +454 -454
- package/lib/commands/section-boundaries.ts +82 -82
- package/lib/commands/sections.ts +451 -451
- package/lib/commands/sync.ts +689 -689
- package/lib/commands/text-ops.ts +449 -449
- package/lib/commands/utilities.ts +448 -448
- package/lib/commands/verify-anchors.ts +272 -272
- package/lib/commands/word-tools.ts +340 -340
- package/lib/comment-realign.ts +99 -99
- package/lib/config.ts +84 -84
- package/lib/crossref.ts +781 -781
- package/lib/csl.ts +191 -191
- package/lib/dependencies.ts +132 -132
- package/lib/diff-engine.ts +465 -465
- package/lib/doi-cache.ts +115 -115
- package/lib/doi.ts +879 -879
- package/lib/equations.ts +506 -506
- package/lib/errors.ts +350 -350
- package/lib/format.ts +541 -541
- package/lib/git.ts +326 -326
- package/lib/grammar.ts +303 -303
- package/lib/image-registry.ts +180 -180
- package/lib/import.ts +932 -906
- package/lib/input.ts +174 -0
- package/lib/journals.ts +543 -543
- package/lib/macro-filter.lua +201 -201
- package/lib/macros.ts +273 -273
- package/lib/merge.ts +633 -633
- package/lib/ooxml.ts +768 -768
- package/lib/orcid.ts +144 -144
- package/lib/pdf-comments.ts +263 -263
- package/lib/pdf-import.ts +524 -524
- package/lib/plugins.ts +362 -362
- package/lib/postprocess.ts +188 -188
- package/lib/pptx-color-filter.lua +37 -37
- package/lib/pptx-template.ts +469 -469
- package/lib/pptx-themes.ts +483 -483
- package/lib/protect-restore.ts +520 -520
- package/lib/rate-limiter.ts +127 -127
- package/lib/response.ts +200 -197
- package/lib/restore-references.ts +240 -240
- package/lib/review.ts +327 -327
- package/lib/schema.ts +494 -488
- package/lib/scientific-words.ts +73 -73
- package/lib/sections.ts +428 -428
- package/lib/slides.ts +756 -756
- package/lib/spelling.ts +334 -334
- package/lib/templates.ts +526 -526
- package/lib/themes.ts +742 -742
- package/lib/trackchanges.ts +166 -166
- package/lib/tui.ts +450 -450
- package/lib/types.ts +546 -546
- package/lib/undo.ts +250 -250
- package/lib/utils.ts +69 -69
- package/lib/variables.ts +179 -179
- package/lib/word-extraction.ts +525 -525
- package/lib/word.ts +526 -526
- package/lib/wordcomments.ts +789 -789
- package/package.json +1 -1
- package/scripts/postbuild.js +47 -47
- package/skill/REFERENCE.md +550 -550
- package/skill/SKILL.md +302 -302
- package/tsconfig.json +26 -26
- package/types/index.d.ts +531 -531
- package/issues.md +0 -180
- package/site/assets/extra.css +0 -208
- package/site/commands.html +0 -926
- package/site/configuration.html +0 -469
- package/site/index.html +0 -288
- package/site/troubleshooting.html +0 -461
- package/site/workflow.html +0 -518
package/site/workflow.html
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<h1 id="revision-workflow">Revision Workflow</h1>
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<p>The canonical version lives in your markdown files. Word is the
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exchange format — you build it when you need to share, and sync it
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when feedback comes back.</p>
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original Word comments.</li>
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<li>Archive the reviewer’s file. Repeat.</li>
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<p>From scratch:</p>
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<p>Either way, the project has this shape:</p>
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class="sourceCode markdown"><code class="sourceCode markdown"><span id="cb5-1"><a href="#cb5-1" aria-hidden="true" tabindex="-1"></a>Global temperatures have risen by 1.1°C since pre-industrial levels <span class="co">[</span><span class="ot">@IPCC2021</span><span class="co">]</span>.</span></code></pre></div>
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<span id="cb6-3"><a href="#cb6-3" aria-hidden="true" tabindex="-1"></a>As shown in @fig:temperature, the trend has accelerated since 1970.</span></code></pre></div>
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<p>Equations use standard LaTeX — inline with <code>$...$</code>,
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<span id="cb7-5"><a href="#cb7-5" aria-hidden="true" tabindex="-1"></a>\bar{x} = \frac{1}{n}\sum_{i=1}^{n} x_i</span>
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<span id="cb7-6"><a href="#cb7-6" aria-hidden="true" tabindex="-1"></a>$$ {#eq:mean}</span>
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<span id="cb7-8"><a href="#cb7-8" aria-hidden="true" tabindex="-1"></a>Reference with @eq:mean → "Equation 1"</span></code></pre></div>
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<p>Simple tables take pipe syntax:</p>
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class="sourceCode markdown"><code class="sourceCode markdown"><span id="cb8-1"><a href="#cb8-1" aria-hidden="true" tabindex="-1"></a><span class="pp">|</span> Site <span class="pp">|</span> Lat <span class="pp">|</span> Long <span class="pp">|</span> n <span class="pp">|</span></span>
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<span id="cb8-3"><a href="#cb8-3" aria-hidden="true" tabindex="-1"></a><span class="pp">|</span> A <span class="pp">|</span> 45.2 <span class="pp">|</span> -120.5 <span class="pp">|</span> 48 <span class="pp">|</span></span>
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<span id="cb8-4"><a href="#cb8-4" aria-hidden="true" tabindex="-1"></a><span class="pp">|</span> B <span class="pp">|</span> 52.1 <span class="pp">|</span> -105.3 <span class="pp">|</span> 61 <span class="pp">|</span></span>
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<span id="cb8-6"><a href="#cb8-6" aria-hidden="true" tabindex="-1"></a>: Study sites {#tbl:sites}</span></code></pre></div>
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<p>For merged cells or multi-line cell content, use grid table
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<span id="cb9-3"><a href="#cb9-3" aria-hidden="true" tabindex="-1"></a>+========<span class="al">==+==========+==</span>========+</span>
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<span id="cb9-6"><a href="#cb9-6" aria-hidden="true" tabindex="-1"></a><span class="pp">|</span> A <span class="pp">|</span> 100 <span class="pp">|</span> 150 <span class="pp">|</span></span>
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<span id="cb9-9"><a href="#cb9-9" aria-hidden="true" tabindex="-1"></a>: Annual measurements {#tbl:results}</span></code></pre></div>
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<p>Cross-references resolve automatically at build time —
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if you’re importing an existing document.</p>
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<h2 id="building-and-sharing">Building and Sharing</h2>
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<div class="sourceCode" id="cb10"><pre
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<p>Set a journal profile to get the right citation style and PDF
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<div class="sourceCode" id="cb11"><pre
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<p>Six profiles include formatting defaults — <code>nature</code>,
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<div class="sourceCode" id="cb12"><pre
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<p>For a live preview while you write:</p>
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<div class="sourceCode" id="cb13"><pre
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<hr />
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<h2 id="syncing-reviewer-feedback">Syncing Reviewer Feedback</h2>
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<p>When a reviewer returns a Word document with track changes and
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<div class="sourceCode" id="cb14"><pre
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<p>Track changes become CriticMarkup annotations inline in your
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class="sourceCode markdown"><code class="sourceCode markdown"><span id="cb15-1"><a href="#cb15-1" aria-hidden="true" tabindex="-1"></a>The sample size was {--100--}{++150++} participants.</span>
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<p>Comments land with the reviewer’s name:</p>
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class="sourceCode markdown"><code class="sourceCode markdown"><span id="cb16-1"><a href="#cb16-1" aria-hidden="true" tabindex="-1"></a>{>>Reviewer 2: The confidence intervals here seem too narrow. Please clarify.<<}</span></code></pre></div>
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<p>If your markdown has changed since you sent the document out —
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<div class="sourceCode" id="cb17"><pre
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<span id="cb17-2"><a href="#cb17-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> sync reviewed.docx <span class="at">--comments-only</span></span></code></pre></div>
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<p>For reviewers who annotate PDFs rather than Word files:</p>
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<div class="sourceCode" id="cb18"><pre
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<p>Supported annotation types: sticky notes, text boxes,
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the text that was highlighted or struck through.</p>
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<hr />
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<h2 id="track-changes">Track Changes</h2>
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<p>List what’s pending:</p>
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<div class="sourceCode" id="cb19"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb19-1"><a href="#cb19-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> accept methods.md</span></code></pre></div>
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<p>Accept or reject individually, or all at once:</p>
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<div class="sourceCode" id="cb20"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb20-1"><a href="#cb20-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> accept methods.md <span class="at">-n</span> 1 <span class="co"># accept change #1</span></span>
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<span id="cb20-2"><a href="#cb20-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> reject methods.md <span class="at">-n</span> 2 <span class="co"># reject change #2</span></span>
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<span id="cb20-3"><a href="#cb20-3" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> accept methods.md <span class="at">-a</span> <span class="co"># accept all</span></span></code></pre></div>
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<p>For an interactive review with keyboard shortcuts
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<div class="sourceCode" id="cb21"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb21-1"><a href="#cb21-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> review methods.md</span></code></pre></div>
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<hr />
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<h2 id="comments">Comments</h2>
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<p>Navigate pending comments:</p>
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<div class="sourceCode" id="cb22"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb22-1"><a href="#cb22-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> todo <span class="co"># list all pending as a checklist</span></span>
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<span id="cb22-2"><a href="#cb22-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> next <span class="co"># show the next one</span></span>
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<span id="cb22-3"><a href="#cb22-3" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> next <span class="at">-n</span> 3 <span class="co"># skip to the 3rd</span></span>
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<span id="cb22-4"><a href="#cb22-4" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> comments methods.md <span class="co"># all comments in one section, with context</span></span>
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<span id="cb22-5"><a href="#cb22-5" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> comments methods.md <span class="at">--author</span> <span class="st">"Reviewer 2"</span></span></code></pre></div>
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<p>Reply with your name set once in config:</p>
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<div class="sourceCode" id="cb23"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb23-1"><a href="#cb23-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> config user <span class="st">"Your Name"</span></span>
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<span id="cb23-2"><a href="#cb23-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> reply methods.md <span class="at">-n</span> 1 <span class="at">-m</span> <span class="st">"Added clarification in the revised text."</span></span></code></pre></div>
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<p>The reply appears adjacent to the original:</p>
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<div class="sourceCode" id="cb24"><pre
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class="sourceCode markdown"><code class="sourceCode markdown"><span id="cb24-1"><a href="#cb24-1" aria-hidden="true" tabindex="-1"></a>{>>Reviewer 2: The confidence intervals seem too narrow.<<} {>>Your Name: Clarified; the intervals are bootstrap CIs at 95%.<<}</span></code></pre></div>
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<p>Adjacent comments from different authors thread in Word
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automatically. Comments must be adjacent — no text between them —
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for threading to work.</p>
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<p>Mark addressed:</p>
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<div class="sourceCode" id="cb25"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb25-1"><a href="#cb25-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> resolve methods.md <span class="at">-n</span> 1</span></code></pre></div>
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<hr />
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<h2 id="multiple-reviewers">Multiple Reviewers</h2>
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<p>When several reviewers return separate files,
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<code>rev merge</code> reconciles them against a shared
|
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baseline:</p>
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<div class="sourceCode" id="cb26"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb26-1"><a href="#cb26-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> merge reviewer_A.docx reviewer_B.docx</span></code></pre></div>
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<p>docrev compares each file against <code>.rev/base.docx</code>
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resolution.</p>
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<h2 id="rebuilding-and-responding">Rebuilding and Responding</h2>
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<p>Once you’ve handled the feedback, rebuild:</p>
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<div class="sourceCode" id="cb27"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb27-1"><a href="#cb27-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> build docx <span class="at">--dual</span></span></code></pre></div>
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<p>This produces two files — <code>my-paper.docx</code> (clean,
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for submission or the next round) and
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<code>my-paper_comments.docx</code> (with your replies threaded
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under the original Word comments). The same flag works for PDF,
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rendering comments as LaTeX margin notes:</p>
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<div class="sourceCode" id="cb28"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb28-1"><a href="#cb28-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> build pdf <span class="at">--dual</span></span></code></pre></div>
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<p>Generate a point-by-point response letter from the resolved
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comments:</p>
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<h2 id="archiving-and-repeating">Archiving and Repeating</h2>
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<p>Move reviewer files out of the project folder:</p>
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb30-1"><a href="#cb30-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> archive <span class="co"># → archive/20241215_143022_reviewed.docx</span></span>
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<span id="cb30-2"><a href="#cb30-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> archive <span class="at">--by</span> Smith <span class="co"># → archive/20241215_143022_Smith_my-paper.docx</span></span>
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<span id="cb30-3"><a href="#cb30-3" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> archive <span class="at">--dry-run</span> <span class="co"># preview without moving</span></span></code></pre></div>
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<p>Take a snapshot before a major revision round:</p>
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<p>The cycle continues: receive feedback, sync, handle changes and
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comments, rebuild, archive.</p>
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<hr />
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<h2 id="pre-submission-checks">Pre-Submission Checks</h2>
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<div class="sourceCode" id="cb32"><pre
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class="sourceCode bash"><code class="sourceCode bash"><span id="cb32-1"><a href="#cb32-1" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> check <span class="co"># full check: lint, citations, grammar</span></span>
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<span id="cb32-2"><a href="#cb32-2" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> doi check references.bib <span class="co"># validate all DOIs</span></span>
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<span id="cb32-3"><a href="#cb32-3" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> validate <span class="at">-j</span> nature <span class="co"># journal-specific requirements</span></span>
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<span id="cb32-4"><a href="#cb32-4" aria-hidden="true" tabindex="-1"></a><span class="fu">rev</span> word-count <span class="at">-j</span> nature <span class="co"># check against word limit</span></span></code></pre></div>
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<p>For journals with strict requirements, running
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<code>rev validate --list</code> shows which profiles are
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available and which include formatting support
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(<code>[formatting]</code> tag).</p>
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<h2 id="quick-reference">Quick Reference</h2>
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<td>Start from Word</td>
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<td><code>rev import manuscript.docx</code></td>
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<tr>
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<td>Start fresh</td>
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<td><code>rev new my-paper</code></td>
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<td>Build DOCX</td>
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<tr>
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<td>Build clean + annotated</td>
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<td><code>rev build docx --dual</code></td>
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<td>Build PDF</td>
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<td><code>rev build pdf</code></td>
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<td>Sync feedback</td>
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<td><code>rev sync reviewed.docx</code></td>
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<tr>
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<td>Sync comments only (prose changed)</td>
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<td><code>rev sync reviewed.docx --comments-only</code></td>
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<tr>
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<td>Check anchor drift</td>
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<td><code>rev verify-anchors reviewed.docx</code></td>
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<tr>
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<td>Project status</td>
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<td><code>rev status</code></td>
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<td>List pending</td>
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<td><code>rev todo</code></td>
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<tr>
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<td>Next comment</td>
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<td><code>rev next</code></td>
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</tr>
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<tr>
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<td>Accept all changes</td>
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<td><code>rev accept file.md -a</code></td>
|
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</tr>
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<tr>
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<td>Reply to comment</td>
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<td><code>rev reply file.md -n 1 -m "..."</code></td>
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</tr>
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<tr>
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<td>Archive reviewer files</td>
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<td><code>rev archive</code></td>
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</tr>
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<tr>
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<td>Response letter</td>
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<td><code>rev response</code></td>
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</tr>
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<tr>
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<td>Pre-submit check</td>
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<td><code>rev check</code></td>
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</table>
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<h2 class="h6">On this page</h2>
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<li><a href="#revision-workflow" id="toc-revision-workflow">Revision
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Workflow</a>
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<li><a href="#starting-a-project" id="toc-starting-a-project">Starting a
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Project</a></li>
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in Markdown</a></li>
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<li><a href="#building-and-sharing"
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<li><a href="#syncing-reviewer-feedback"
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id="toc-syncing-reviewer-feedback">Syncing Reviewer Feedback</a></li>
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Changes</a></li>
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<li><a href="#comments" id="toc-comments">Comments</a></li>
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<li><a href="#multiple-reviewers" id="toc-multiple-reviewers">Multiple
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Reviewers</a></li>
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<li><a href="#rebuilding-and-responding"
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<li><a href="#archiving-and-repeating"
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<li><a href="#pre-submission-checks"
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id="toc-pre-submission-checks">Pre-Submission Checks</a></li>
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<li><a href="#quick-reference" id="toc-quick-reference">Quick
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Reference</a></li>
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<div class="container d-flex justify-content-between align-items-center text-muted" style="font-size:.85rem">
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<span>docrev 0.9.15</span>
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<span>Built with <a href="https://pandoc.org" class="text-muted">pandoc</a></span>
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