docrev 0.11.0 → 0.11.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/.gitattributes +1 -1
- package/CHANGELOG.md +202 -184
- package/PLAN-tables-and-postprocess.md +850 -850
- package/README.md +433 -431
- package/bin/rev.js +11 -11
- package/bin/rev.ts +145 -145
- package/completions/rev.bash +127 -127
- package/completions/rev.ps1 +210 -210
- package/completions/rev.zsh +207 -207
- package/dist/lib/build.d.ts +80 -0
- package/dist/lib/build.d.ts.map +1 -1
- package/dist/lib/build.js +207 -4
- package/dist/lib/build.js.map +1 -1
- package/dist/lib/commands/build.d.ts.map +1 -1
- package/dist/lib/commands/build.js +34 -12
- package/dist/lib/commands/build.js.map +1 -1
- package/dist/lib/commands/utilities.js +164 -164
- package/dist/lib/commands/word-tools.js +8 -8
- package/dist/lib/grammar.js +3 -3
- package/dist/lib/macro-filter.lua +201 -201
- package/dist/lib/pdf-comments.js +44 -44
- package/dist/lib/plugins.js +57 -57
- package/dist/lib/pptx-color-filter.lua +37 -37
- package/dist/lib/pptx-themes.js +115 -115
- package/dist/lib/schema.d.ts.map +1 -1
- package/dist/lib/schema.js +8 -2
- package/dist/lib/schema.js.map +1 -1
- package/dist/lib/spelling.js +2 -2
- package/dist/lib/templates.js +387 -387
- package/dist/lib/themes.js +51 -51
- package/dist/lib/trackchanges.d.ts +41 -25
- package/dist/lib/trackchanges.d.ts.map +1 -1
- package/dist/lib/trackchanges.js +90 -151
- package/dist/lib/trackchanges.js.map +1 -1
- package/dist/lib/types.d.ts +0 -7
- package/dist/lib/types.d.ts.map +1 -1
- package/docs-src/build.py +113 -113
- package/docs-src/extra.css +208 -208
- package/docs-src/md-to-html.lua +6 -6
- package/docs-src/template.html +116 -116
- package/eslint.config.js +27 -27
- package/lib/anchor-match.ts +307 -307
- package/lib/annotations.ts +664 -664
- package/lib/build.ts +2047 -1770
- package/lib/citations.ts +160 -160
- package/lib/commands/build.ts +885 -860
- package/lib/commands/citations.ts +515 -515
- package/lib/commands/comments.ts +1050 -1050
- package/lib/commands/context.ts +176 -176
- package/lib/commands/core.ts +309 -309
- package/lib/commands/doi.ts +451 -451
- package/lib/commands/file-ops.ts +372 -372
- package/lib/commands/history.ts +320 -320
- package/lib/commands/index.ts +87 -87
- package/lib/commands/init.ts +259 -259
- package/lib/commands/merge-resolve.ts +378 -378
- package/lib/commands/preview.ts +178 -178
- package/lib/commands/project-info.ts +244 -244
- package/lib/commands/quality.ts +517 -517
- package/lib/commands/response.ts +454 -454
- package/lib/commands/section-boundaries.ts +82 -82
- package/lib/commands/sections.ts +451 -451
- package/lib/commands/sync.ts +689 -689
- package/lib/commands/text-ops.ts +449 -449
- package/lib/commands/utilities.ts +448 -448
- package/lib/commands/verify-anchors.ts +272 -272
- package/lib/commands/word-tools.ts +340 -340
- package/lib/comment-realign.ts +99 -99
- package/lib/config.ts +84 -84
- package/lib/crossref.ts +781 -781
- package/lib/csl.ts +191 -191
- package/lib/dependencies.ts +132 -132
- package/lib/diff-engine.ts +465 -465
- package/lib/doi-cache.ts +115 -115
- package/lib/doi.ts +879 -879
- package/lib/equations.ts +506 -506
- package/lib/errors.ts +350 -350
- package/lib/format.ts +541 -541
- package/lib/git.ts +326 -326
- package/lib/grammar.ts +303 -303
- package/lib/image-registry.ts +180 -180
- package/lib/import.ts +906 -906
- package/lib/journals.ts +543 -543
- package/lib/macro-filter.lua +201 -201
- package/lib/macros.ts +273 -273
- package/lib/merge.ts +633 -633
- package/lib/ooxml.ts +768 -768
- package/lib/orcid.ts +144 -144
- package/lib/pdf-comments.ts +263 -263
- package/lib/pdf-import.ts +524 -524
- package/lib/plugins.ts +362 -362
- package/lib/postprocess.ts +188 -188
- package/lib/pptx-color-filter.lua +37 -37
- package/lib/pptx-template.ts +469 -469
- package/lib/pptx-themes.ts +483 -483
- package/lib/protect-restore.ts +520 -520
- package/lib/rate-limiter.ts +127 -127
- package/lib/response.ts +197 -197
- package/lib/restore-references.ts +240 -240
- package/lib/review.ts +327 -327
- package/lib/schema.ts +494 -488
- package/lib/scientific-words.ts +73 -73
- package/lib/sections.ts +428 -428
- package/lib/slides.ts +756 -756
- package/lib/spelling.ts +334 -334
- package/lib/templates.ts +526 -526
- package/lib/themes.ts +742 -742
- package/lib/trackchanges.ts +166 -247
- package/lib/tui.ts +450 -450
- package/lib/types.ts +546 -558
- package/lib/undo.ts +250 -250
- package/lib/utils.ts +69 -69
- package/lib/variables.ts +179 -179
- package/lib/word-extraction.ts +525 -525
- package/lib/word.ts +526 -526
- package/lib/wordcomments.ts +789 -789
- package/mkdocs.yml +64 -64
- package/package.json +137 -137
- package/scripts/postbuild.js +47 -47
- package/skill/REFERENCE.md +550 -539
- package/skill/SKILL.md +302 -295
- package/tsconfig.json +26 -26
- package/types/index.d.ts +531 -525
package/completions/rev.zsh
CHANGED
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#compdef rev
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# Zsh completion for rev (docrev)
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# Install: add to fpath or run:
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# eval "$(rev completions zsh)"
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_rev() {
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local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
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commands=(
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'build:Build PDF/DOCX/TEX from sections'
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'new:Create new project from template'
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'import:Import Word document'
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'sections:Import to section files'
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'extract:Extract text from Word'
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'review:Interactive review TUI'
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'status:Show annotation counts'
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'comments:List comments'
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'resolve:Mark comment as resolved'
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'reply:Reply to comments'
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'strip:Output clean markdown'
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'refs:Show reference status'
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'migrate:Convert hardcoded refs'
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'config:Configure settings'
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'install:Check dependencies'
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'doi:DOI validation'
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'citations:Validate citations'
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'equations:Extract equations'
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'figures:List figures'
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'response:Generate response letter'
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'anonymize:Prepare for blind review'
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'validate:Check journal requirements'
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'merge:Merge reviewer feedback'
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'diff:Compare against git history'
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'history:Show revision history'
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'help:Show help'
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'init:Initialize project'
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'split:Split paper.md to sections'
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'word-count:Show word counts per section'
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'wc:Show word counts (alias)'
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'stats:Show project statistics'
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'search:Search across files'
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'backup:Create timestamped backup'
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'export:Export project as zip'
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'preview:Build and open document'
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'watch:Watch and auto-rebuild'
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'lint:Check for issues'
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'grammar:Check grammar and style'
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'annotate:Add comments to DOCX'
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'apply:Apply annotations as track changes'
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'comment:Interactive comment mode'
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'completions:Generate shell completions'
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)
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preview_formats=(
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'pdf:Preview PDF'
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'docx:Preview Word document'
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)
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build_formats=(
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'pdf:Build PDF'
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'docx:Build Word document'
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'tex:Build LaTeX'
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'all:Build all formats'
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)
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doi_actions=(
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'check:Validate DOIs'
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'lookup:Find missing DOIs'
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'fetch:Get BibTeX from DOI'
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'add:Add citation by DOI'
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)
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eq_actions=(
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'list:List equations'
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'extract:Extract to file'
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'convert:Convert to Word'
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'from-word:Extract from Word'
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)
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help_topics=(
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'workflow:Review workflow'
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'syntax:CriticMarkup syntax'
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'commands:All commands'
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)
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journals=(
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'nature:Nature journal'
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'science:Science journal'
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'plos:PLOS ONE'
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'cell:Cell journal'
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'ecology:Ecology journals'
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'custom:Custom profile'
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)
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case "$words[2]" in
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build)
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_describe -t formats 'format' build_formats
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'--toc[Include table of contents]' \
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'--show-changes[Show track changes in DOCX]' \
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'--clean[Clean build files]'
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;;
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new)
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'--list[List templates]' \
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'--template[Template name]:template:(paper minimal thesis proposal)'
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;;
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doi)
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;;
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equations|eq)
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validate)
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;;
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help)
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_describe -t topics 'topic' help_topics
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config)
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word-count|wc)
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preview)
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watch)
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annotate)
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import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
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merge)
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export)
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esac
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}
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_rev "$@"
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#compdef rev
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# Zsh completion for rev (docrev)
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# Install: add to fpath or run:
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# eval "$(rev completions zsh)"
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_rev() {
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local -a commands build_formats doi_actions eq_actions help_topics journals preview_formats
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commands=(
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'build:Build PDF/DOCX/TEX from sections'
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'new:Create new project from template'
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'import:Import Word document'
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'sections:Import to section files'
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'extract:Extract text from Word'
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'review:Interactive review TUI'
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'status:Show annotation counts'
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'comments:List comments'
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'resolve:Mark comment as resolved'
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'reply:Reply to comments'
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'strip:Output clean markdown'
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'refs:Show reference status'
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'migrate:Convert hardcoded refs'
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'config:Configure settings'
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'install:Check dependencies'
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'doi:DOI validation'
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'citations:Validate citations'
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'equations:Extract equations'
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'figures:List figures'
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'response:Generate response letter'
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'anonymize:Prepare for blind review'
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'validate:Check journal requirements'
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'merge:Merge reviewer feedback'
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'diff:Compare against git history'
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'history:Show revision history'
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'help:Show help'
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'init:Initialize project'
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'split:Split paper.md to sections'
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'word-count:Show word counts per section'
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'wc:Show word counts (alias)'
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'stats:Show project statistics'
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'search:Search across files'
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'backup:Create timestamped backup'
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'export:Export project as zip'
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'preview:Build and open document'
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'watch:Watch and auto-rebuild'
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'lint:Check for issues'
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'grammar:Check grammar and style'
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'annotate:Add comments to DOCX'
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'apply:Apply annotations as track changes'
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'comment:Interactive comment mode'
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'completions:Generate shell completions'
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+
preview_formats=(
|
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56
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'pdf:Preview PDF'
|
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+
'docx:Preview Word document'
|
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|
+
)
|
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+
|
|
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+
build_formats=(
|
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61
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+
'pdf:Build PDF'
|
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|
+
'docx:Build Word document'
|
|
63
|
+
'tex:Build LaTeX'
|
|
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|
+
'all:Build all formats'
|
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65
|
+
)
|
|
66
|
+
|
|
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|
+
doi_actions=(
|
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68
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+
'check:Validate DOIs'
|
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|
+
'lookup:Find missing DOIs'
|
|
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|
+
'fetch:Get BibTeX from DOI'
|
|
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|
+
'add:Add citation by DOI'
|
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|
+
)
|
|
73
|
+
|
|
74
|
+
eq_actions=(
|
|
75
|
+
'list:List equations'
|
|
76
|
+
'extract:Extract to file'
|
|
77
|
+
'convert:Convert to Word'
|
|
78
|
+
'from-word:Extract from Word'
|
|
79
|
+
)
|
|
80
|
+
|
|
81
|
+
help_topics=(
|
|
82
|
+
'workflow:Review workflow'
|
|
83
|
+
'syntax:CriticMarkup syntax'
|
|
84
|
+
'commands:All commands'
|
|
85
|
+
)
|
|
86
|
+
|
|
87
|
+
journals=(
|
|
88
|
+
'nature:Nature journal'
|
|
89
|
+
'science:Science journal'
|
|
90
|
+
'plos:PLOS ONE'
|
|
91
|
+
'cell:Cell journal'
|
|
92
|
+
'ecology:Ecology journals'
|
|
93
|
+
'custom:Custom profile'
|
|
94
|
+
)
|
|
95
|
+
|
|
96
|
+
case "$words[2]" in
|
|
97
|
+
build)
|
|
98
|
+
_describe -t formats 'format' build_formats
|
|
99
|
+
_arguments \
|
|
100
|
+
'--toc[Include table of contents]' \
|
|
101
|
+
'--show-changes[Show track changes in DOCX]' \
|
|
102
|
+
'--clean[Clean build files]'
|
|
103
|
+
;;
|
|
104
|
+
new)
|
|
105
|
+
_arguments \
|
|
106
|
+
'--list[List templates]' \
|
|
107
|
+
'--template[Template name]:template:(paper minimal thesis proposal)'
|
|
108
|
+
;;
|
|
109
|
+
doi)
|
|
110
|
+
_describe -t actions 'action' doi_actions
|
|
111
|
+
;;
|
|
112
|
+
equations|eq)
|
|
113
|
+
_describe -t actions 'action' eq_actions
|
|
114
|
+
;;
|
|
115
|
+
validate)
|
|
116
|
+
_arguments \
|
|
117
|
+
'--list[List journals]' \
|
|
118
|
+
'--journal[Journal name]:journal:($journals)'
|
|
119
|
+
;;
|
|
120
|
+
help)
|
|
121
|
+
_describe -t topics 'topic' help_topics
|
|
122
|
+
;;
|
|
123
|
+
config)
|
|
124
|
+
_values 'setting' 'user[Set user name]'
|
|
125
|
+
;;
|
|
126
|
+
word-count|wc)
|
|
127
|
+
_arguments \
|
|
128
|
+
'--limit[Word limit]:number:' \
|
|
129
|
+
'--journal[Use journal word limit]:journal:'
|
|
130
|
+
;;
|
|
131
|
+
preview)
|
|
132
|
+
_describe -t formats 'format' preview_formats
|
|
133
|
+
;;
|
|
134
|
+
watch)
|
|
135
|
+
_arguments \
|
|
136
|
+
'--no-open[Do not open after build]'
|
|
137
|
+
_values 'format' 'pdf' 'docx' 'all'
|
|
138
|
+
;;
|
|
139
|
+
lint)
|
|
140
|
+
_arguments \
|
|
141
|
+
'--fix[Auto-fix issues]'
|
|
142
|
+
;;
|
|
143
|
+
grammar)
|
|
144
|
+
_arguments \
|
|
145
|
+
'--learn[Add word to dictionary]:word:' \
|
|
146
|
+
'--forget[Remove from dictionary]:word:' \
|
|
147
|
+
'--list[List dictionary words]' \
|
|
148
|
+
'--rules[List grammar rules]' \
|
|
149
|
+
'--no-scientific[Disable science rules]' \
|
|
150
|
+
'--severity[Minimum severity]:level:(error warning info)'
|
|
151
|
+
_files -g '*.md'
|
|
152
|
+
;;
|
|
153
|
+
annotate)
|
|
154
|
+
_arguments \
|
|
155
|
+
'-m[Comment message]:text:' \
|
|
156
|
+
'-s[Search text]:text:' \
|
|
157
|
+
'-a[Author name]:name:'
|
|
158
|
+
_files -g '*.docx'
|
|
159
|
+
;;
|
|
160
|
+
apply)
|
|
161
|
+
_arguments \
|
|
162
|
+
'-a[Author name]:name:'
|
|
163
|
+
_files -g '*.md'
|
|
164
|
+
;;
|
|
165
|
+
comment)
|
|
166
|
+
_arguments \
|
|
167
|
+
'-a[Author name]:name:'
|
|
168
|
+
_files -g '*.docx'
|
|
169
|
+
;;
|
|
170
|
+
completions)
|
|
171
|
+
_values 'shell' 'bash' 'zsh'
|
|
172
|
+
;;
|
|
173
|
+
import|sections|extract|review|status|comments|strip|refs|migrate|figures|response|anonymize|split|search|stats)
|
|
174
|
+
_files -g '*.md' -g '*.docx'
|
|
175
|
+
;;
|
|
176
|
+
resolve|reply)
|
|
177
|
+
_arguments \
|
|
178
|
+
'-n[Comment number]:number:' \
|
|
179
|
+
'-m[Reply message]:message:'
|
|
180
|
+
_files -g '*.md'
|
|
181
|
+
;;
|
|
182
|
+
check|lookup|add|citations)
|
|
183
|
+
_files -g '*.bib'
|
|
184
|
+
;;
|
|
185
|
+
merge)
|
|
186
|
+
_files -g '*.md' -g '*.docx'
|
|
187
|
+
;;
|
|
188
|
+
backup)
|
|
189
|
+
_arguments \
|
|
190
|
+
'--name[Custom backup name]:name:' \
|
|
191
|
+
'--output[Output directory]:dir:_files -/'
|
|
192
|
+
;;
|
|
193
|
+
export)
|
|
194
|
+
_arguments \
|
|
195
|
+
'--output[Output filename]:file:' \
|
|
196
|
+
'--include-output[Include built files]'
|
|
197
|
+
;;
|
|
198
|
+
*)
|
|
199
|
+
_describe -t commands 'command' commands
|
|
200
|
+
_arguments \
|
|
201
|
+
'--help[Show help]' \
|
|
202
|
+
'--version[Show version]'
|
|
203
|
+
;;
|
|
204
|
+
esac
|
|
205
|
+
}
|
|
206
|
+
|
|
207
|
+
_rev "$@"
|
package/dist/lib/build.d.ts
CHANGED
|
@@ -7,6 +7,7 @@
|
|
|
7
7
|
* - Strips annotations appropriately per output format
|
|
8
8
|
* - Runs pandoc with crossref filter
|
|
9
9
|
*/
|
|
10
|
+
import { type NativeTrackChangeStats } from './trackchanges.js';
|
|
10
11
|
import type { Author, JournalFormatting } from './types.js';
|
|
11
12
|
import { type MacroDef } from './macros.js';
|
|
12
13
|
export interface CrossrefConfig {
|
|
@@ -20,6 +21,15 @@ export interface CrossrefConfig {
|
|
|
20
21
|
export interface PdfConfig {
|
|
21
22
|
template?: string | null;
|
|
22
23
|
headerIncludes?: string | null;
|
|
24
|
+
/**
|
|
25
|
+
* Path (relative to the project dir, or absolute) to a LaTeX preamble file
|
|
26
|
+
* injected via pandoc's `-H`. Use for custom fonts, `fancyhdr` running
|
|
27
|
+
* headers, `lineno` line numbers, etc. A missing file is reported, not
|
|
28
|
+
* silently dropped.
|
|
29
|
+
*/
|
|
30
|
+
header?: string | null;
|
|
31
|
+
/** Second LaTeX preamble file, injected via `-H` after {@link header}. */
|
|
32
|
+
footer?: string | null;
|
|
23
33
|
documentclass?: string;
|
|
24
34
|
fontsize?: string;
|
|
25
35
|
geometry?: string;
|
|
@@ -249,6 +259,57 @@ export declare function applyFormatTransforms(content: string, format: string, c
|
|
|
249
259
|
* Prepare paper.md for specific output format
|
|
250
260
|
*/
|
|
251
261
|
export declare function prepareForFormat(paperPath: string, format: string, config: BuildConfig, _options?: BuildOptions): string;
|
|
262
|
+
export interface ReviewedDocxOptions {
|
|
263
|
+
/** Final output path for the reviewed docx. */
|
|
264
|
+
outputPath: string;
|
|
265
|
+
/** Author name attached to the tracked revisions. */
|
|
266
|
+
author?: string;
|
|
267
|
+
/**
|
|
268
|
+
* Thread `{>>...<<}` comments into the same file (parent + reply via
|
|
269
|
+
* commentsExtended.xml). When false, comments are stripped and only tracked
|
|
270
|
+
* changes are emitted.
|
|
271
|
+
*/
|
|
272
|
+
includeComments?: boolean;
|
|
273
|
+
/**
|
|
274
|
+
* Optional reference docx: realign comment anchors against its text before
|
|
275
|
+
* injecting, matching the `--reference` behaviour of `--dual`. Only used
|
|
276
|
+
* when includeComments is true.
|
|
277
|
+
*/
|
|
278
|
+
referencePath?: string | null;
|
|
279
|
+
/** Extra pandoc args (CLI --pandoc-arg), applied to the single pandoc pass. */
|
|
280
|
+
pandocArgs?: string[];
|
|
281
|
+
verbose?: boolean;
|
|
282
|
+
}
|
|
283
|
+
export interface ReviewedDocxResult {
|
|
284
|
+
success: boolean;
|
|
285
|
+
error?: string;
|
|
286
|
+
outputPath: string;
|
|
287
|
+
stats: NativeTrackChangeStats;
|
|
288
|
+
/** Number of parent comments threaded (0 when includeComments is false). */
|
|
289
|
+
commentCount: number;
|
|
290
|
+
replyCount: number;
|
|
291
|
+
/** Comments that could not be anchored (markers not found in the docx). */
|
|
292
|
+
skippedComments: number;
|
|
293
|
+
/** Realigned comment count when a reference docx was supplied. */
|
|
294
|
+
realigned?: number;
|
|
295
|
+
}
|
|
296
|
+
/**
|
|
297
|
+
* Build a single reviewed docx containing pandoc-native tracked changes and,
|
|
298
|
+
* optionally, threaded Word comments.
|
|
299
|
+
*
|
|
300
|
+
* One pandoc pass through the full rev filter chain (crossref, citeproc,
|
|
301
|
+
* reference-doc, macros) emits the `w:ins`/`w:del` revisions from native
|
|
302
|
+
* `.insertion`/`.deletion` spans; the same file is then post-processed to
|
|
303
|
+
* thread `{>>...<<}` comments (parent + reply). This is the `--dual
|
|
304
|
+
* --show-changes` artifact: my edits as tracked changes *and* the reviewer's
|
|
305
|
+
* comments with my replies, in the one file a supervisor opens and hands back.
|
|
306
|
+
*
|
|
307
|
+
* @param directory - Project directory
|
|
308
|
+
* @param paperPath - Combined paper.md (from combineSections)
|
|
309
|
+
* @param config - Build config
|
|
310
|
+
* @param options - Output path, author, comment handling
|
|
311
|
+
*/
|
|
312
|
+
export declare function buildReviewedDocx(directory: string, paperPath: string, config: BuildConfig, options: ReviewedDocxOptions): Promise<ReviewedDocxResult>;
|
|
252
313
|
/**
|
|
253
314
|
* A raw LaTeX `\begin{figure}...\end{figure}` block found in source markdown.
|
|
254
315
|
* `exotic` blocks contain features we don't auto-translate (multiple
|
|
@@ -283,6 +344,25 @@ export declare function translateRawLatexFigures(content: string): {
|
|
|
283
344
|
* won't survive the docx build. Returns null when there's nothing to warn about.
|
|
284
345
|
*/
|
|
285
346
|
export declare function collectRawLatexFigureWarning(directory: string, config: BuildConfig): string | null;
|
|
347
|
+
/**
|
|
348
|
+
* Resolve user-supplied LaTeX preamble sources into files to inject via
|
|
349
|
+
* pandoc's `-H`. Covers `pdf.header` / `pdf.footer` (file paths, relative to
|
|
350
|
+
* the project dir) and an inline `header-includes` string (written to a temp
|
|
351
|
+
* `.tex` in the project dir). Pandoc runs with cwd = the project dir, so
|
|
352
|
+
* returned paths are left relative to it.
|
|
353
|
+
*
|
|
354
|
+
* A `pdf.header`/`pdf.footer` file that does not exist is reported in
|
|
355
|
+
* `warnings` rather than dropped silently — the fail-open loss of the entire
|
|
356
|
+
* user preamble was the bug this addresses.
|
|
357
|
+
*
|
|
358
|
+
* @returns headerArgs — file paths to pass after `-H`; tempFiles — paths the
|
|
359
|
+
* caller must clean up; warnings — human-readable notices for missing files.
|
|
360
|
+
*/
|
|
361
|
+
export declare function resolveLatexPreambleSources(directory: string, config: BuildConfig): {
|
|
362
|
+
headerArgs: string[];
|
|
363
|
+
tempFiles: string[];
|
|
364
|
+
warnings: string[];
|
|
365
|
+
};
|
|
286
366
|
/**
|
|
287
367
|
* Build pandoc arguments for format.
|
|
288
368
|
*
|
package/dist/lib/build.d.ts.map
CHANGED
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"build.d.ts","sourceRoot":"","sources":["../../lib/build.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;
|
|
1
|
+
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