docrev 0.11.0 → 0.11.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (123) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +202 -184
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +433 -431
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/build.d.ts +80 -0
  11. package/dist/lib/build.d.ts.map +1 -1
  12. package/dist/lib/build.js +207 -4
  13. package/dist/lib/build.js.map +1 -1
  14. package/dist/lib/commands/build.d.ts.map +1 -1
  15. package/dist/lib/commands/build.js +34 -12
  16. package/dist/lib/commands/build.js.map +1 -1
  17. package/dist/lib/commands/utilities.js +164 -164
  18. package/dist/lib/commands/word-tools.js +8 -8
  19. package/dist/lib/grammar.js +3 -3
  20. package/dist/lib/macro-filter.lua +201 -201
  21. package/dist/lib/pdf-comments.js +44 -44
  22. package/dist/lib/plugins.js +57 -57
  23. package/dist/lib/pptx-color-filter.lua +37 -37
  24. package/dist/lib/pptx-themes.js +115 -115
  25. package/dist/lib/schema.d.ts.map +1 -1
  26. package/dist/lib/schema.js +8 -2
  27. package/dist/lib/schema.js.map +1 -1
  28. package/dist/lib/spelling.js +2 -2
  29. package/dist/lib/templates.js +387 -387
  30. package/dist/lib/themes.js +51 -51
  31. package/dist/lib/trackchanges.d.ts +41 -25
  32. package/dist/lib/trackchanges.d.ts.map +1 -1
  33. package/dist/lib/trackchanges.js +90 -151
  34. package/dist/lib/trackchanges.js.map +1 -1
  35. package/dist/lib/types.d.ts +0 -7
  36. package/dist/lib/types.d.ts.map +1 -1
  37. package/docs-src/build.py +113 -113
  38. package/docs-src/extra.css +208 -208
  39. package/docs-src/md-to-html.lua +6 -6
  40. package/docs-src/template.html +116 -116
  41. package/eslint.config.js +27 -27
  42. package/lib/anchor-match.ts +307 -307
  43. package/lib/annotations.ts +664 -664
  44. package/lib/build.ts +2047 -1770
  45. package/lib/citations.ts +160 -160
  46. package/lib/commands/build.ts +885 -860
  47. package/lib/commands/citations.ts +515 -515
  48. package/lib/commands/comments.ts +1050 -1050
  49. package/lib/commands/context.ts +176 -176
  50. package/lib/commands/core.ts +309 -309
  51. package/lib/commands/doi.ts +451 -451
  52. package/lib/commands/file-ops.ts +372 -372
  53. package/lib/commands/history.ts +320 -320
  54. package/lib/commands/index.ts +87 -87
  55. package/lib/commands/init.ts +259 -259
  56. package/lib/commands/merge-resolve.ts +378 -378
  57. package/lib/commands/preview.ts +178 -178
  58. package/lib/commands/project-info.ts +244 -244
  59. package/lib/commands/quality.ts +517 -517
  60. package/lib/commands/response.ts +454 -454
  61. package/lib/commands/section-boundaries.ts +82 -82
  62. package/lib/commands/sections.ts +451 -451
  63. package/lib/commands/sync.ts +689 -689
  64. package/lib/commands/text-ops.ts +449 -449
  65. package/lib/commands/utilities.ts +448 -448
  66. package/lib/commands/verify-anchors.ts +272 -272
  67. package/lib/commands/word-tools.ts +340 -340
  68. package/lib/comment-realign.ts +99 -99
  69. package/lib/config.ts +84 -84
  70. package/lib/crossref.ts +781 -781
  71. package/lib/csl.ts +191 -191
  72. package/lib/dependencies.ts +132 -132
  73. package/lib/diff-engine.ts +465 -465
  74. package/lib/doi-cache.ts +115 -115
  75. package/lib/doi.ts +879 -879
  76. package/lib/equations.ts +506 -506
  77. package/lib/errors.ts +350 -350
  78. package/lib/format.ts +541 -541
  79. package/lib/git.ts +326 -326
  80. package/lib/grammar.ts +303 -303
  81. package/lib/image-registry.ts +180 -180
  82. package/lib/import.ts +906 -906
  83. package/lib/journals.ts +543 -543
  84. package/lib/macro-filter.lua +201 -201
  85. package/lib/macros.ts +273 -273
  86. package/lib/merge.ts +633 -633
  87. package/lib/ooxml.ts +768 -768
  88. package/lib/orcid.ts +144 -144
  89. package/lib/pdf-comments.ts +263 -263
  90. package/lib/pdf-import.ts +524 -524
  91. package/lib/plugins.ts +362 -362
  92. package/lib/postprocess.ts +188 -188
  93. package/lib/pptx-color-filter.lua +37 -37
  94. package/lib/pptx-template.ts +469 -469
  95. package/lib/pptx-themes.ts +483 -483
  96. package/lib/protect-restore.ts +520 -520
  97. package/lib/rate-limiter.ts +127 -127
  98. package/lib/response.ts +197 -197
  99. package/lib/restore-references.ts +240 -240
  100. package/lib/review.ts +327 -327
  101. package/lib/schema.ts +494 -488
  102. package/lib/scientific-words.ts +73 -73
  103. package/lib/sections.ts +428 -428
  104. package/lib/slides.ts +756 -756
  105. package/lib/spelling.ts +334 -334
  106. package/lib/templates.ts +526 -526
  107. package/lib/themes.ts +742 -742
  108. package/lib/trackchanges.ts +166 -247
  109. package/lib/tui.ts +450 -450
  110. package/lib/types.ts +546 -558
  111. package/lib/undo.ts +250 -250
  112. package/lib/utils.ts +69 -69
  113. package/lib/variables.ts +179 -179
  114. package/lib/word-extraction.ts +525 -525
  115. package/lib/word.ts +526 -526
  116. package/lib/wordcomments.ts +789 -789
  117. package/mkdocs.yml +64 -64
  118. package/package.json +137 -137
  119. package/scripts/postbuild.js +47 -47
  120. package/skill/REFERENCE.md +550 -539
  121. package/skill/SKILL.md +302 -295
  122. package/tsconfig.json +26 -26
  123. package/types/index.d.ts +531 -525
@@ -1,372 +1,372 @@
1
- /**
2
- * File operation commands: backup, archive, export, clean
3
- *
4
- * Commands that create, move, or delete project files.
5
- */
6
-
7
- import type { Command } from 'commander';
8
- import {
9
- chalk,
10
- fs,
11
- path,
12
- fmt,
13
- findFiles,
14
- loadBuildConfig,
15
- } from './context.js';
16
-
17
- // Use the actual BuildConfig from build.ts which allows string|Author[]
18
- type BuildConfig = ReturnType<typeof loadBuildConfig>;
19
-
20
- interface ZipLike {
21
- addLocalFile(localPath: string, zipPath?: string): void;
22
- }
23
-
24
- /**
25
- * Recursively add directory contents to a zip archive, filtering by predicate
26
- */
27
- function addDirToZip(
28
- zip: ZipLike,
29
- dir: string,
30
- shouldInclude: (name: string) => boolean,
31
- zipPath = '',
32
- ): void {
33
- const entries = fs.readdirSync(dir, { withFileTypes: true });
34
- for (const entry of entries) {
35
- const fullPath = path.join(dir, entry.name);
36
- const entryZipPath = path.join(zipPath, entry.name);
37
-
38
- if (!shouldInclude(entry.name)) continue;
39
-
40
- if (entry.isDirectory()) {
41
- addDirToZip(zip, fullPath, shouldInclude, entryZipPath);
42
- } else {
43
- zip.addLocalFile(fullPath, zipPath || undefined);
44
- }
45
- }
46
- }
47
-
48
- // Options interfaces
49
- interface BackupOptions {
50
- name?: string;
51
- output?: string;
52
- }
53
-
54
- interface ArchiveOptions {
55
- dir?: string;
56
- by?: string;
57
- rename?: boolean;
58
- dryRun?: boolean;
59
- }
60
-
61
- interface ExportOptions {
62
- output?: string;
63
- includeOutput?: boolean;
64
- }
65
-
66
- interface CleanOptions {
67
- dryRun?: boolean;
68
- all?: boolean;
69
- }
70
-
71
- /**
72
- * Register file-ops commands with the program
73
- */
74
- export function register(program: Command): void {
75
- // ==========================================================================
76
- // BACKUP command - Timestamped project backup
77
- // ==========================================================================
78
-
79
- program
80
- .command('backup')
81
- .description('Create timestamped project backup')
82
- .option('-n, --name <name>', 'Custom backup name')
83
- .option('-o, --output <dir>', 'Output directory', '.')
84
- .action(async (options: BackupOptions) => {
85
- const { default: AdmZip } = await import('adm-zip');
86
- const zip = new AdmZip();
87
-
88
- const date = new Date().toISOString().slice(0, 10);
89
- const name = options.name || `backup-${date}`;
90
- const outputPath = path.join(options.output || '.', `${name}.zip`);
91
-
92
- // Files to exclude
93
- const excludePatterns = [
94
- 'node_modules', '.git', '.DS_Store', '*.zip',
95
- 'paper.md' // Generated file
96
- ];
97
-
98
- const shouldInclude = (file: string): boolean => {
99
- for (const pattern of excludePatterns) {
100
- if (file.includes(pattern.replace('*', ''))) return false;
101
- }
102
- return true;
103
- };
104
-
105
- addDirToZip(zip, '.', shouldInclude);
106
-
107
- zip.writeZip(outputPath);
108
- console.log(fmt.status('success', `Backup created: ${outputPath}`));
109
- });
110
-
111
- // ==========================================================================
112
- // ARCHIVE command - Archive reviewer docx files
113
- // ==========================================================================
114
-
115
- program
116
- .command('archive')
117
- .description('Move reviewer .docx files to archive folder')
118
- .argument('[files...]', 'Specific files to archive (default: all .docx)')
119
- .option('-d, --dir <folder>', 'Archive folder name', 'archive')
120
- .option('--by <name>', 'Reviewer name (auto-detected if single commenter)')
121
- .option('--no-rename', 'Keep original filenames')
122
- .option('--dry-run', 'Preview without moving files')
123
- .action(async (files: string[] | undefined, options: ArchiveOptions) => {
124
- const { extractWordComments } = await import('../import.js');
125
- const { default: YAML } = await import('yaml');
126
-
127
- // Find docx files to archive
128
- let docxFiles = files && files.length > 0
129
- ? files.filter(f => f.endsWith('.docx') && fs.existsSync(f))
130
- : findFiles('.docx');
131
-
132
- // Exclude our own build outputs
133
- let projectSlug: string | null = null;
134
- const configPath = path.join(process.cwd(), 'rev.yaml');
135
- if (fs.existsSync(configPath)) {
136
- try {
137
- const config = YAML.parse(fs.readFileSync(configPath, 'utf-8'));
138
- if (config.title) {
139
- projectSlug = config.title
140
- .toLowerCase()
141
- .replace(/[^a-z0-9]+/g, '-')
142
- .replace(/^-|-$/g, '')
143
- .slice(0, 50);
144
- }
145
- } catch (e) {
146
- // Ignore config errors
147
- }
148
- }
149
-
150
- // Filter out build outputs
151
- if (projectSlug && (!files || files.length === 0)) {
152
- const buildPatterns = [
153
- `${projectSlug}.docx`,
154
- `${projectSlug}_comments.docx`,
155
- `${projectSlug}-changes.docx`,
156
- 'paper.docx',
157
- 'paper_comments.docx',
158
- 'paper-changes.docx',
159
- ];
160
- const excluded: string[] = [];
161
- docxFiles = docxFiles.filter(f => {
162
- const base = path.basename(f).toLowerCase();
163
- const isBuilt = buildPatterns.includes(base);
164
- if (isBuilt) excluded.push(f);
165
- return !isBuilt;
166
- });
167
- if (excluded.length > 0) {
168
- console.log(chalk.dim(` Skipping build outputs: ${excluded.join(', ')}`));
169
- console.log();
170
- }
171
- }
172
-
173
- if (docxFiles.length === 0) {
174
- console.log(fmt.status('info', 'No .docx files to archive.'));
175
- return;
176
- }
177
-
178
- const projectTitle = projectSlug;
179
-
180
- // Create archive folder
181
- const archiveDir = path.resolve(options.dir || 'archive');
182
- if (!options.dryRun && !fs.existsSync(archiveDir)) {
183
- fs.mkdirSync(archiveDir, { recursive: true });
184
- }
185
-
186
- console.log(fmt.header('Archive'));
187
- console.log();
188
-
189
- const moved: string[] = [];
190
- for (const file of docxFiles) {
191
- const stat = fs.statSync(file);
192
- const mtime = stat.mtime;
193
- const timestamp = mtime.toISOString().slice(0, 19).replace(/[-:]/g, '').replace('T', '_');
194
-
195
- // Determine reviewer name
196
- let reviewer: string | null = options.by || null;
197
- if (!reviewer && options.rename !== false) {
198
- try {
199
- const comments = await extractWordComments(file);
200
- const authors = [...new Set(comments.map(c => c.author).filter(a => a && a !== 'Unknown'))];
201
- if (authors.length === 1) {
202
- reviewer = authors[0].replace(/[^a-zA-Z0-9]/g, '-').replace(/^-|-$/g, '');
203
- }
204
- } catch (e) {
205
- // Ignore extraction errors
206
- }
207
- }
208
-
209
- // Generate new name
210
- let newName: string;
211
- if (options.rename === false) {
212
- newName = path.basename(file);
213
- } else {
214
- const base = path.basename(file, '.docx');
215
- if (/^\d{8}_\d{6}_/.test(base)) {
216
- newName = path.basename(file);
217
- } else {
218
- const namePart = projectTitle || base;
219
- if (reviewer) {
220
- newName = `${timestamp}_${reviewer}_${namePart}.docx`;
221
- } else {
222
- newName = `${timestamp}_${namePart}.docx`;
223
- }
224
- }
225
- }
226
-
227
- const destPath = path.join(archiveDir, newName);
228
-
229
- if (options.dryRun) {
230
- console.log(` ${chalk.dim(file)} → ${chalk.cyan(path.join(options.dir || 'archive', newName))}`);
231
- } else {
232
- // Handle name collision
233
- let finalPath = destPath;
234
- let counter = 1;
235
- while (fs.existsSync(finalPath)) {
236
- const ext = path.extname(newName);
237
- const base = path.basename(newName, ext);
238
- finalPath = path.join(archiveDir, `${base}_${counter}${ext}`);
239
- counter++;
240
- }
241
- fs.renameSync(file, finalPath);
242
- console.log(` ${chalk.dim(file)} → ${chalk.green(path.relative(process.cwd(), finalPath))}`);
243
- }
244
- moved.push(file);
245
- }
246
-
247
- console.log();
248
- if (options.dryRun) {
249
- console.log(fmt.status('info', `Would archive ${moved.length} file(s). Run without --dry-run to proceed.`));
250
- } else {
251
- console.log(fmt.status('success', `Archived ${moved.length} file(s) to ${options.dir || 'archive'}/`));
252
- }
253
- });
254
-
255
- // ==========================================================================
256
- // EXPORT command - Export project as distributable zip
257
- // ==========================================================================
258
-
259
- program
260
- .command('export')
261
- .description('Export project as distributable zip')
262
- .option('-o, --output <file>', 'Output filename')
263
- .option('--include-output', 'Include built PDF/DOCX files')
264
- .action(async (options: ExportOptions) => {
265
- const { default: AdmZip } = await import('adm-zip');
266
- const { build } = await import('../build.js');
267
-
268
- let config: Partial<BuildConfig> = {};
269
- try {
270
- config = loadBuildConfig('.') || {};
271
- } catch {
272
- // Not in a rev project, that's ok
273
- }
274
-
275
- // Build first if including output
276
- if (options.includeOutput) {
277
- console.log(chalk.dim('Building documents...'));
278
- await build('.', ['pdf', 'docx']);
279
- }
280
-
281
- const zip = new AdmZip();
282
- const projectName = config.title?.replace(/[^a-zA-Z0-9]/g, '-').toLowerCase() || 'project';
283
- const outputPath = options.output || `${projectName}-export.zip`;
284
-
285
- const exclude = ['node_modules', '.git', '.DS_Store', '*.zip'];
286
-
287
- const shouldInclude = (name: string): boolean => {
288
- if (!options.includeOutput && (name.endsWith('.pdf') || name.endsWith('.docx'))) {
289
- return false;
290
- }
291
- for (const pattern of exclude) {
292
- if (name === pattern || name.includes(pattern.replace('*', ''))) return false;
293
- }
294
- return true;
295
- };
296
-
297
- addDirToZip(zip, '.', shouldInclude);
298
-
299
- zip.writeZip(outputPath);
300
- console.log(fmt.status('success', `Exported: ${outputPath}`));
301
- });
302
-
303
- // ==========================================================================
304
- // CLEAN command - Remove generated files
305
- // ==========================================================================
306
-
307
- program
308
- .command('clean')
309
- .description('Remove generated files (paper.md, PDFs, DOCXs)')
310
- .option('-n, --dry-run', 'Show what would be deleted without deleting')
311
- .option('--all', 'Also remove backup and export zips')
312
- .action((options: CleanOptions) => {
313
- let config: Partial<BuildConfig> = {};
314
- try {
315
- config = loadBuildConfig('.') || {};
316
- } catch {
317
- // Not in a rev project, that's ok
318
- }
319
-
320
- const projectName = config.title?.toLowerCase().replace(/\s+/g, '-') || 'paper';
321
-
322
- // Files to clean
323
- const patterns = [
324
- 'paper.md',
325
- '*.pdf',
326
- `${projectName}.docx`,
327
- `${projectName}.pdf`,
328
- `${projectName}.tex`,
329
- '.paper-*.md', // Temp build files
330
- ];
331
-
332
- if (options.all) {
333
- patterns.push('*.zip', 'backup-*.zip', '*-export.zip');
334
- }
335
-
336
- const toDelete: string[] = [];
337
-
338
- for (const pattern of patterns) {
339
- if (pattern.includes('*')) {
340
- const regex = new RegExp('^' + pattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
341
- const files = fs.readdirSync('.').filter(f => regex.test(f));
342
- toDelete.push(...files);
343
- } else if (fs.existsSync(pattern)) {
344
- toDelete.push(pattern);
345
- }
346
- }
347
-
348
- if (toDelete.length === 0) {
349
- console.log(chalk.dim('No generated files to clean.'));
350
- return;
351
- }
352
-
353
- console.log(fmt.header('Clean'));
354
- console.log();
355
-
356
- for (const file of toDelete) {
357
- if (options.dryRun) {
358
- console.log(chalk.dim(` Would delete: ${file}`));
359
- } else {
360
- fs.unlinkSync(file);
361
- console.log(chalk.red(` Deleted: ${file}`));
362
- }
363
- }
364
-
365
- console.log();
366
- if (options.dryRun) {
367
- console.log(chalk.dim(`Would delete ${toDelete.length} file(s). Run without --dry-run to delete.`));
368
- } else {
369
- console.log(fmt.status('success', `Cleaned ${toDelete.length} file(s)`));
370
- }
371
- });
372
- }
1
+ /**
2
+ * File operation commands: backup, archive, export, clean
3
+ *
4
+ * Commands that create, move, or delete project files.
5
+ */
6
+
7
+ import type { Command } from 'commander';
8
+ import {
9
+ chalk,
10
+ fs,
11
+ path,
12
+ fmt,
13
+ findFiles,
14
+ loadBuildConfig,
15
+ } from './context.js';
16
+
17
+ // Use the actual BuildConfig from build.ts which allows string|Author[]
18
+ type BuildConfig = ReturnType<typeof loadBuildConfig>;
19
+
20
+ interface ZipLike {
21
+ addLocalFile(localPath: string, zipPath?: string): void;
22
+ }
23
+
24
+ /**
25
+ * Recursively add directory contents to a zip archive, filtering by predicate
26
+ */
27
+ function addDirToZip(
28
+ zip: ZipLike,
29
+ dir: string,
30
+ shouldInclude: (name: string) => boolean,
31
+ zipPath = '',
32
+ ): void {
33
+ const entries = fs.readdirSync(dir, { withFileTypes: true });
34
+ for (const entry of entries) {
35
+ const fullPath = path.join(dir, entry.name);
36
+ const entryZipPath = path.join(zipPath, entry.name);
37
+
38
+ if (!shouldInclude(entry.name)) continue;
39
+
40
+ if (entry.isDirectory()) {
41
+ addDirToZip(zip, fullPath, shouldInclude, entryZipPath);
42
+ } else {
43
+ zip.addLocalFile(fullPath, zipPath || undefined);
44
+ }
45
+ }
46
+ }
47
+
48
+ // Options interfaces
49
+ interface BackupOptions {
50
+ name?: string;
51
+ output?: string;
52
+ }
53
+
54
+ interface ArchiveOptions {
55
+ dir?: string;
56
+ by?: string;
57
+ rename?: boolean;
58
+ dryRun?: boolean;
59
+ }
60
+
61
+ interface ExportOptions {
62
+ output?: string;
63
+ includeOutput?: boolean;
64
+ }
65
+
66
+ interface CleanOptions {
67
+ dryRun?: boolean;
68
+ all?: boolean;
69
+ }
70
+
71
+ /**
72
+ * Register file-ops commands with the program
73
+ */
74
+ export function register(program: Command): void {
75
+ // ==========================================================================
76
+ // BACKUP command - Timestamped project backup
77
+ // ==========================================================================
78
+
79
+ program
80
+ .command('backup')
81
+ .description('Create timestamped project backup')
82
+ .option('-n, --name <name>', 'Custom backup name')
83
+ .option('-o, --output <dir>', 'Output directory', '.')
84
+ .action(async (options: BackupOptions) => {
85
+ const { default: AdmZip } = await import('adm-zip');
86
+ const zip = new AdmZip();
87
+
88
+ const date = new Date().toISOString().slice(0, 10);
89
+ const name = options.name || `backup-${date}`;
90
+ const outputPath = path.join(options.output || '.', `${name}.zip`);
91
+
92
+ // Files to exclude
93
+ const excludePatterns = [
94
+ 'node_modules', '.git', '.DS_Store', '*.zip',
95
+ 'paper.md' // Generated file
96
+ ];
97
+
98
+ const shouldInclude = (file: string): boolean => {
99
+ for (const pattern of excludePatterns) {
100
+ if (file.includes(pattern.replace('*', ''))) return false;
101
+ }
102
+ return true;
103
+ };
104
+
105
+ addDirToZip(zip, '.', shouldInclude);
106
+
107
+ zip.writeZip(outputPath);
108
+ console.log(fmt.status('success', `Backup created: ${outputPath}`));
109
+ });
110
+
111
+ // ==========================================================================
112
+ // ARCHIVE command - Archive reviewer docx files
113
+ // ==========================================================================
114
+
115
+ program
116
+ .command('archive')
117
+ .description('Move reviewer .docx files to archive folder')
118
+ .argument('[files...]', 'Specific files to archive (default: all .docx)')
119
+ .option('-d, --dir <folder>', 'Archive folder name', 'archive')
120
+ .option('--by <name>', 'Reviewer name (auto-detected if single commenter)')
121
+ .option('--no-rename', 'Keep original filenames')
122
+ .option('--dry-run', 'Preview without moving files')
123
+ .action(async (files: string[] | undefined, options: ArchiveOptions) => {
124
+ const { extractWordComments } = await import('../import.js');
125
+ const { default: YAML } = await import('yaml');
126
+
127
+ // Find docx files to archive
128
+ let docxFiles = files && files.length > 0
129
+ ? files.filter(f => f.endsWith('.docx') && fs.existsSync(f))
130
+ : findFiles('.docx');
131
+
132
+ // Exclude our own build outputs
133
+ let projectSlug: string | null = null;
134
+ const configPath = path.join(process.cwd(), 'rev.yaml');
135
+ if (fs.existsSync(configPath)) {
136
+ try {
137
+ const config = YAML.parse(fs.readFileSync(configPath, 'utf-8'));
138
+ if (config.title) {
139
+ projectSlug = config.title
140
+ .toLowerCase()
141
+ .replace(/[^a-z0-9]+/g, '-')
142
+ .replace(/^-|-$/g, '')
143
+ .slice(0, 50);
144
+ }
145
+ } catch (e) {
146
+ // Ignore config errors
147
+ }
148
+ }
149
+
150
+ // Filter out build outputs
151
+ if (projectSlug && (!files || files.length === 0)) {
152
+ const buildPatterns = [
153
+ `${projectSlug}.docx`,
154
+ `${projectSlug}_comments.docx`,
155
+ `${projectSlug}-changes.docx`,
156
+ 'paper.docx',
157
+ 'paper_comments.docx',
158
+ 'paper-changes.docx',
159
+ ];
160
+ const excluded: string[] = [];
161
+ docxFiles = docxFiles.filter(f => {
162
+ const base = path.basename(f).toLowerCase();
163
+ const isBuilt = buildPatterns.includes(base);
164
+ if (isBuilt) excluded.push(f);
165
+ return !isBuilt;
166
+ });
167
+ if (excluded.length > 0) {
168
+ console.log(chalk.dim(` Skipping build outputs: ${excluded.join(', ')}`));
169
+ console.log();
170
+ }
171
+ }
172
+
173
+ if (docxFiles.length === 0) {
174
+ console.log(fmt.status('info', 'No .docx files to archive.'));
175
+ return;
176
+ }
177
+
178
+ const projectTitle = projectSlug;
179
+
180
+ // Create archive folder
181
+ const archiveDir = path.resolve(options.dir || 'archive');
182
+ if (!options.dryRun && !fs.existsSync(archiveDir)) {
183
+ fs.mkdirSync(archiveDir, { recursive: true });
184
+ }
185
+
186
+ console.log(fmt.header('Archive'));
187
+ console.log();
188
+
189
+ const moved: string[] = [];
190
+ for (const file of docxFiles) {
191
+ const stat = fs.statSync(file);
192
+ const mtime = stat.mtime;
193
+ const timestamp = mtime.toISOString().slice(0, 19).replace(/[-:]/g, '').replace('T', '_');
194
+
195
+ // Determine reviewer name
196
+ let reviewer: string | null = options.by || null;
197
+ if (!reviewer && options.rename !== false) {
198
+ try {
199
+ const comments = await extractWordComments(file);
200
+ const authors = [...new Set(comments.map(c => c.author).filter(a => a && a !== 'Unknown'))];
201
+ if (authors.length === 1) {
202
+ reviewer = authors[0].replace(/[^a-zA-Z0-9]/g, '-').replace(/^-|-$/g, '');
203
+ }
204
+ } catch (e) {
205
+ // Ignore extraction errors
206
+ }
207
+ }
208
+
209
+ // Generate new name
210
+ let newName: string;
211
+ if (options.rename === false) {
212
+ newName = path.basename(file);
213
+ } else {
214
+ const base = path.basename(file, '.docx');
215
+ if (/^\d{8}_\d{6}_/.test(base)) {
216
+ newName = path.basename(file);
217
+ } else {
218
+ const namePart = projectTitle || base;
219
+ if (reviewer) {
220
+ newName = `${timestamp}_${reviewer}_${namePart}.docx`;
221
+ } else {
222
+ newName = `${timestamp}_${namePart}.docx`;
223
+ }
224
+ }
225
+ }
226
+
227
+ const destPath = path.join(archiveDir, newName);
228
+
229
+ if (options.dryRun) {
230
+ console.log(` ${chalk.dim(file)} → ${chalk.cyan(path.join(options.dir || 'archive', newName))}`);
231
+ } else {
232
+ // Handle name collision
233
+ let finalPath = destPath;
234
+ let counter = 1;
235
+ while (fs.existsSync(finalPath)) {
236
+ const ext = path.extname(newName);
237
+ const base = path.basename(newName, ext);
238
+ finalPath = path.join(archiveDir, `${base}_${counter}${ext}`);
239
+ counter++;
240
+ }
241
+ fs.renameSync(file, finalPath);
242
+ console.log(` ${chalk.dim(file)} → ${chalk.green(path.relative(process.cwd(), finalPath))}`);
243
+ }
244
+ moved.push(file);
245
+ }
246
+
247
+ console.log();
248
+ if (options.dryRun) {
249
+ console.log(fmt.status('info', `Would archive ${moved.length} file(s). Run without --dry-run to proceed.`));
250
+ } else {
251
+ console.log(fmt.status('success', `Archived ${moved.length} file(s) to ${options.dir || 'archive'}/`));
252
+ }
253
+ });
254
+
255
+ // ==========================================================================
256
+ // EXPORT command - Export project as distributable zip
257
+ // ==========================================================================
258
+
259
+ program
260
+ .command('export')
261
+ .description('Export project as distributable zip')
262
+ .option('-o, --output <file>', 'Output filename')
263
+ .option('--include-output', 'Include built PDF/DOCX files')
264
+ .action(async (options: ExportOptions) => {
265
+ const { default: AdmZip } = await import('adm-zip');
266
+ const { build } = await import('../build.js');
267
+
268
+ let config: Partial<BuildConfig> = {};
269
+ try {
270
+ config = loadBuildConfig('.') || {};
271
+ } catch {
272
+ // Not in a rev project, that's ok
273
+ }
274
+
275
+ // Build first if including output
276
+ if (options.includeOutput) {
277
+ console.log(chalk.dim('Building documents...'));
278
+ await build('.', ['pdf', 'docx']);
279
+ }
280
+
281
+ const zip = new AdmZip();
282
+ const projectName = config.title?.replace(/[^a-zA-Z0-9]/g, '-').toLowerCase() || 'project';
283
+ const outputPath = options.output || `${projectName}-export.zip`;
284
+
285
+ const exclude = ['node_modules', '.git', '.DS_Store', '*.zip'];
286
+
287
+ const shouldInclude = (name: string): boolean => {
288
+ if (!options.includeOutput && (name.endsWith('.pdf') || name.endsWith('.docx'))) {
289
+ return false;
290
+ }
291
+ for (const pattern of exclude) {
292
+ if (name === pattern || name.includes(pattern.replace('*', ''))) return false;
293
+ }
294
+ return true;
295
+ };
296
+
297
+ addDirToZip(zip, '.', shouldInclude);
298
+
299
+ zip.writeZip(outputPath);
300
+ console.log(fmt.status('success', `Exported: ${outputPath}`));
301
+ });
302
+
303
+ // ==========================================================================
304
+ // CLEAN command - Remove generated files
305
+ // ==========================================================================
306
+
307
+ program
308
+ .command('clean')
309
+ .description('Remove generated files (paper.md, PDFs, DOCXs)')
310
+ .option('-n, --dry-run', 'Show what would be deleted without deleting')
311
+ .option('--all', 'Also remove backup and export zips')
312
+ .action((options: CleanOptions) => {
313
+ let config: Partial<BuildConfig> = {};
314
+ try {
315
+ config = loadBuildConfig('.') || {};
316
+ } catch {
317
+ // Not in a rev project, that's ok
318
+ }
319
+
320
+ const projectName = config.title?.toLowerCase().replace(/\s+/g, '-') || 'paper';
321
+
322
+ // Files to clean
323
+ const patterns = [
324
+ 'paper.md',
325
+ '*.pdf',
326
+ `${projectName}.docx`,
327
+ `${projectName}.pdf`,
328
+ `${projectName}.tex`,
329
+ '.paper-*.md', // Temp build files
330
+ ];
331
+
332
+ if (options.all) {
333
+ patterns.push('*.zip', 'backup-*.zip', '*-export.zip');
334
+ }
335
+
336
+ const toDelete: string[] = [];
337
+
338
+ for (const pattern of patterns) {
339
+ if (pattern.includes('*')) {
340
+ const regex = new RegExp('^' + pattern.replace(/\./g, '\\.').replace(/\*/g, '.*') + '$');
341
+ const files = fs.readdirSync('.').filter(f => regex.test(f));
342
+ toDelete.push(...files);
343
+ } else if (fs.existsSync(pattern)) {
344
+ toDelete.push(pattern);
345
+ }
346
+ }
347
+
348
+ if (toDelete.length === 0) {
349
+ console.log(chalk.dim('No generated files to clean.'));
350
+ return;
351
+ }
352
+
353
+ console.log(fmt.header('Clean'));
354
+ console.log();
355
+
356
+ for (const file of toDelete) {
357
+ if (options.dryRun) {
358
+ console.log(chalk.dim(` Would delete: ${file}`));
359
+ } else {
360
+ fs.unlinkSync(file);
361
+ console.log(chalk.red(` Deleted: ${file}`));
362
+ }
363
+ }
364
+
365
+ console.log();
366
+ if (options.dryRun) {
367
+ console.log(chalk.dim(`Would delete ${toDelete.length} file(s). Run without --dry-run to delete.`));
368
+ } else {
369
+ console.log(fmt.status('success', `Cleaned ${toDelete.length} file(s)`));
370
+ }
371
+ });
372
+ }