docrev 0.10.0 → 0.10.1

package/dist/lib/macro-filter.lua

@@ -1,201 +1,201 @@
---[[
-docrev macro filter.
-
-Reads a JSON sidecar describing one-argument LaTeX-style macros and expands
-them per output FORMAT. Used for the built-in \tofill{X} (bold orange [X]
-placeholder) and any user-declared macros from rev.yaml.
-
-Sidecar path is passed via the DOCREV_MACROS_FILE environment variable, set
-by build.ts before spawning pandoc. Env vars (not metadata) because pandoc's
-filter traversal runs RawInline/RawBlock BEFORE Meta, so by the time we'd
-read metadata the inline expansions have already happened.
-
-Why raw OpenXML for docx? Pandoc 3.x's docx writer does NOT honor
-`Span{style="color: #..."}` — those spans render as plain text with no
-<w:color> run property. So for docx we emit raw <w:r> nodes directly. Same
-reasoning for the pptx-color-filter.
-
-For latex/pdf/beamer the markdown source already contains \tofill{X} as a raw
-LaTeX inline; we leave it alone because build.ts injects a \providecommand
-into header-includes. For html we emit a raw <span> with inline style. For
-everything else (markdown, gfm, plain) we degrade to **bold [X]** so the
-placeholder never silently disappears.
-]]
-
-local json = require('pandoc.json')
-
-local macros_by_name = {}
-
-local function load_sidecar()
-  local path = os.getenv('DOCREV_MACROS_FILE')
-  if not path or path == '' then
-    return
-  end
-  local fh = io.open(path, 'r')
-  if not fh then
-    io.stderr:write('docrev macro-filter: cannot read sidecar: ' .. path .. '\n')
-    return
-  end
-  local content = fh:read('*a')
-  fh:close()
-  local ok, parsed = pcall(json.decode, content)
-  if not ok or type(parsed) ~= 'table' or type(parsed.macros) ~= 'table' then
-    io.stderr:write('docrev macro-filter: malformed sidecar JSON\n')
-    return
-  end
-  for _, m in ipairs(parsed.macros) do
-    if type(m) == 'table' and type(m.name) == 'string' then
-      macros_by_name[m.name] = m
-    end
-  end
-end
-
-load_sidecar()
-
-local function xml_escape(s)
-  return (s:gsub('&', '&amp;'):gsub('<', '&lt;'):gsub('>', '&gt;'))
-end
-
-local function html_escape(s)
-  return (s
-    :gsub('&', '&amp;')
-    :gsub('<', '&lt;')
-    :gsub('>', '&gt;')
-    :gsub('"', '&quot;'))
-end
-
--- Resolve effective style for a macro in the current pandoc format.
--- Per-format entry wins over `default` (replacement, not merge — matches
--- macros.ts semantics).
-local function pick_style(macro, format)
-  if macro.formats and macro.formats[format] then
-    return macro.formats[format]
-  end
-  return macro.default or {}
-end
-
--- Build the inside of the bracket: [prefix][arg][suffix], optionally without
--- brackets when style.bracket == false.
-local function compose_text(style, arg)
-  local prefix = style.prefix or ''
-  local suffix = style.suffix or ''
-  local inner = prefix .. arg .. suffix
-  if style.bracket == false then
-    return inner
-  end
-  return '[' .. inner .. ']'
-end
-
-local function render_docx_run(style, arg)
-  local rpr = {}
-  if style.color then
-    table.insert(rpr, '<w:color w:val="' .. style.color .. '"/>')
-  end
-  if style.bold then
-    table.insert(rpr, '<w:b/>')
-  end
-  if style.italic then
-    table.insert(rpr, '<w:i/>')
-  end
-  local rpr_xml = ''
-  if #rpr > 0 then
-    rpr_xml = '<w:rPr>' .. table.concat(rpr) .. '</w:rPr>'
-  end
-  local text = xml_escape(compose_text(style, arg))
-  return '<w:r>' .. rpr_xml ..
-         '<w:t xml:space="preserve">' .. text .. '</w:t></w:r>'
-end
-
-local function render_html(style, arg)
-  local css = {}
-  if style.color then
-    table.insert(css, 'color:#' .. style.color)
-  end
-  if style.bold then
-    table.insert(css, 'font-weight:bold')
-  end
-  if style.italic then
-    table.insert(css, 'font-style:italic')
-  end
-  local text = html_escape(compose_text(style, arg))
-  if #css == 0 then
-    return '<span>' .. text .. '</span>'
-  end
-  return '<span style="' .. table.concat(css, ';') .. '">' .. text .. '</span>'
-end
-
--- Fallback path: produce native pandoc inlines so the macro never silently
--- disappears in markdown/gfm/plain output. Used when the current format has
--- no native rich-text path (or we couldn't open the sidecar).
-local function fallback_inlines(style, arg)
-  local doc = pandoc.read(compose_text(style, arg), 'markdown')
-  local inlines = pandoc.utils.blocks_to_inlines(doc.blocks)
-  if style.bold then
-    inlines = { pandoc.Strong(inlines) }
-  end
-  if style.italic then
-    inlines = { pandoc.Emph(inlines) }
-  end
-  return inlines
-end
-
--- Match `\NAME{...}` (with balanced braces inside the argument is NOT
--- supported — the use case is plain placeholder text, mirroring the reference
--- filter; users who need nested braces should use a different mechanism).
-local function parse_call(text)
-  local name, arg = text:match('^\\([A-Za-z][A-Za-z0-9]*)%s*{(.*)}%s*$')
-  if name and arg and macros_by_name[name] then
-    return name, arg
-  end
-  return nil, nil
-end
-
-local function expand_inline(el)
-  if el.format ~= 'tex' and el.format ~= 'latex' then
-    return nil
-  end
-  local name, arg = parse_call(el.text)
-  if not name then return nil end
-  local macro = macros_by_name[name]
-  local style = pick_style(macro, FORMAT)
-
-  if FORMAT == 'docx' then
-    return pandoc.RawInline('openxml', render_docx_run(style, arg))
-  elseif FORMAT == 'html' or FORMAT == 'html4' or FORMAT == 'html5' or FORMAT == 'chunkedhtml' then
-    return pandoc.RawInline('html', render_html(style, arg))
-  elseif FORMAT == 'latex' or FORMAT == 'beamer' or FORMAT == 'context' then
-    -- Leave the raw LaTeX as-is. build.ts injects \providecommand into
-    -- header-includes, so the LaTeX engine renders it directly.
-    return nil
-  else
-    return fallback_inlines(style, arg)
-  end
-end
-
-local function expand_block(el)
-  if el.format ~= 'tex' and el.format ~= 'latex' then
-    return nil
-  end
-  local name, arg = parse_call(el.text)
-  if not name then return nil end
-  local macro = macros_by_name[name]
-  local style = pick_style(macro, FORMAT)
-
-  if FORMAT == 'docx' then
-    return pandoc.RawBlock('openxml', '<w:p>' .. render_docx_run(style, arg) .. '</w:p>')
-  elseif FORMAT == 'html' or FORMAT == 'html4' or FORMAT == 'html5' or FORMAT == 'chunkedhtml' then
-    return pandoc.RawBlock('html', '<p>' .. render_html(style, arg) .. '</p>')
-  elseif FORMAT == 'latex' or FORMAT == 'beamer' or FORMAT == 'context' then
-    return nil
-  else
-    return pandoc.Para(fallback_inlines(style, arg))
-  end
-end
-
-function RawInline(el)
-  return expand_inline(el)
-end
-
-function RawBlock(el)
-  return expand_block(el)
-end
+--[[
+docrev macro filter.
+
+Reads a JSON sidecar describing one-argument LaTeX-style macros and expands
+them per output FORMAT. Used for the built-in \tofill{X} (bold orange [X]
+placeholder) and any user-declared macros from rev.yaml.
+
+Sidecar path is passed via the DOCREV_MACROS_FILE environment variable, set
+by build.ts before spawning pandoc. Env vars (not metadata) because pandoc's
+filter traversal runs RawInline/RawBlock BEFORE Meta, so by the time we'd
+read metadata the inline expansions have already happened.
+
+Why raw OpenXML for docx? Pandoc 3.x's docx writer does NOT honor
+`Span{style="color: #..."}` — those spans render as plain text with no
+<w:color> run property. So for docx we emit raw <w:r> nodes directly. Same
+reasoning for the pptx-color-filter.
+
+For latex/pdf/beamer the markdown source already contains \tofill{X} as a raw
+LaTeX inline; we leave it alone because build.ts injects a \providecommand
+into header-includes. For html we emit a raw <span> with inline style. For
+everything else (markdown, gfm, plain) we degrade to **bold [X]** so the
+placeholder never silently disappears.
+]]
+
+local json = require('pandoc.json')
+
+local macros_by_name = {}
+
+local function load_sidecar()
+  local path = os.getenv('DOCREV_MACROS_FILE')
+  if not path or path == '' then
+    return
+  end
+  local fh = io.open(path, 'r')
+  if not fh then
+    io.stderr:write('docrev macro-filter: cannot read sidecar: ' .. path .. '\n')
+    return
+  end
+  local content = fh:read('*a')
+  fh:close()
+  local ok, parsed = pcall(json.decode, content)
+  if not ok or type(parsed) ~= 'table' or type(parsed.macros) ~= 'table' then
+    io.stderr:write('docrev macro-filter: malformed sidecar JSON\n')
+    return
+  end
+  for _, m in ipairs(parsed.macros) do
+    if type(m) == 'table' and type(m.name) == 'string' then
+      macros_by_name[m.name] = m
+    end
+  end
+end
+
+load_sidecar()
+
+local function xml_escape(s)
+  return (s:gsub('&', '&amp;'):gsub('<', '&lt;'):gsub('>', '&gt;'))
+end
+
+local function html_escape(s)
+  return (s
+    :gsub('&', '&amp;')
+    :gsub('<', '&lt;')
+    :gsub('>', '&gt;')
+    :gsub('"', '&quot;'))
+end
+
+-- Resolve effective style for a macro in the current pandoc format.
+-- Per-format entry wins over `default` (replacement, not merge — matches
+-- macros.ts semantics).
+local function pick_style(macro, format)
+  if macro.formats and macro.formats[format] then
+    return macro.formats[format]
+  end
+  return macro.default or {}
+end
+
+-- Build the inside of the bracket: [prefix][arg][suffix], optionally without
+-- brackets when style.bracket == false.
+local function compose_text(style, arg)
+  local prefix = style.prefix or ''
+  local suffix = style.suffix or ''
+  local inner = prefix .. arg .. suffix
+  if style.bracket == false then
+    return inner
+  end
+  return '[' .. inner .. ']'
+end
+
+local function render_docx_run(style, arg)
+  local rpr = {}
+  if style.color then
+    table.insert(rpr, '<w:color w:val="' .. style.color .. '"/>')
+  end
+  if style.bold then
+    table.insert(rpr, '<w:b/>')
+  end
+  if style.italic then
+    table.insert(rpr, '<w:i/>')
+  end
+  local rpr_xml = ''
+  if #rpr > 0 then
+    rpr_xml = '<w:rPr>' .. table.concat(rpr) .. '</w:rPr>'
+  end
+  local text = xml_escape(compose_text(style, arg))
+  return '<w:r>' .. rpr_xml ..
+         '<w:t xml:space="preserve">' .. text .. '</w:t></w:r>'
+end
+
+local function render_html(style, arg)
+  local css = {}
+  if style.color then
+    table.insert(css, 'color:#' .. style.color)
+  end
+  if style.bold then
+    table.insert(css, 'font-weight:bold')
+  end
+  if style.italic then
+    table.insert(css, 'font-style:italic')
+  end
+  local text = html_escape(compose_text(style, arg))
+  if #css == 0 then
+    return '<span>' .. text .. '</span>'
+  end
+  return '<span style="' .. table.concat(css, ';') .. '">' .. text .. '</span>'
+end
+
+-- Fallback path: produce native pandoc inlines so the macro never silently
+-- disappears in markdown/gfm/plain output. Used when the current format has
+-- no native rich-text path (or we couldn't open the sidecar).
+local function fallback_inlines(style, arg)
+  local doc = pandoc.read(compose_text(style, arg), 'markdown')
+  local inlines = pandoc.utils.blocks_to_inlines(doc.blocks)
+  if style.bold then
+    inlines = { pandoc.Strong(inlines) }
+  end
+  if style.italic then
+    inlines = { pandoc.Emph(inlines) }
+  end
+  return inlines
+end
+
+-- Match `\NAME{...}` (with balanced braces inside the argument is NOT
+-- supported — the use case is plain placeholder text, mirroring the reference
+-- filter; users who need nested braces should use a different mechanism).
+local function parse_call(text)
+  local name, arg = text:match('^\\([A-Za-z][A-Za-z0-9]*)%s*{(.*)}%s*$')
+  if name and arg and macros_by_name[name] then
+    return name, arg
+  end
+  return nil, nil
+end
+
+local function expand_inline(el)
+  if el.format ~= 'tex' and el.format ~= 'latex' then
+    return nil
+  end
+  local name, arg = parse_call(el.text)
+  if not name then return nil end
+  local macro = macros_by_name[name]
+  local style = pick_style(macro, FORMAT)
+
+  if FORMAT == 'docx' then
+    return pandoc.RawInline('openxml', render_docx_run(style, arg))
+  elseif FORMAT == 'html' or FORMAT == 'html4' or FORMAT == 'html5' or FORMAT == 'chunkedhtml' then
+    return pandoc.RawInline('html', render_html(style, arg))
+  elseif FORMAT == 'latex' or FORMAT == 'beamer' or FORMAT == 'context' then
+    -- Leave the raw LaTeX as-is. build.ts injects \providecommand into
+    -- header-includes, so the LaTeX engine renders it directly.
+    return nil
+  else
+    return fallback_inlines(style, arg)
+  end
+end
+
+local function expand_block(el)
+  if el.format ~= 'tex' and el.format ~= 'latex' then
+    return nil
+  end
+  local name, arg = parse_call(el.text)
+  if not name then return nil end
+  local macro = macros_by_name[name]
+  local style = pick_style(macro, FORMAT)
+
+  if FORMAT == 'docx' then
+    return pandoc.RawBlock('openxml', '<w:p>' .. render_docx_run(style, arg) .. '</w:p>')
+  elseif FORMAT == 'html' or FORMAT == 'html4' or FORMAT == 'html5' or FORMAT == 'chunkedhtml' then
+    return pandoc.RawBlock('html', '<p>' .. render_html(style, arg) .. '</p>')
+  elseif FORMAT == 'latex' or FORMAT == 'beamer' or FORMAT == 'context' then
+    return nil
+  else
+    return pandoc.Para(fallback_inlines(style, arg))
+  end
+end
+
+function RawInline(el)
+  return expand_inline(el)
+end
+
+function RawBlock(el)
+  return expand_block(el)
+end

package/dist/lib/pdf-comments.js

@@ -8,42 +8,42 @@ import { escapeLatex } from './utils.js';
  * LaTeX preamble for margin comments
  * Uses todonotes package with custom styling
  */
-export const MARGIN_NOTES_PREAMBLE = `
-% Margin notes for comments
-\\usepackage[colorinlistoftodos,textsize=scriptsize]{todonotes}
-\\usepackage{xcolor}
-
-% Define comment colors by author
-\\definecolor{commentblue}{RGB}{59, 130, 246}
-\\definecolor{commentgreen}{RGB}{34, 197, 94}
-\\definecolor{commentorange}{RGB}{249, 115, 22}
-\\definecolor{commentpurple}{RGB}{168, 85, 247}
-\\definecolor{commentgray}{RGB}{107, 114, 128}
-
-% Custom margin note command
-\\newcommand{\\margincomment}[2][]{%
-  \\todo[linecolor=commentblue,backgroundcolor=commentblue!10,bordercolor=commentblue,size=\\scriptsize,#1]{#2}%
-}
-
-% Author-specific commands
-\\newcommand{\\reviewercomment}[2]{%
-  \\todo[linecolor=commentgreen,backgroundcolor=commentgreen!10,bordercolor=commentgreen,size=\\scriptsize]{\\textbf{#1:} #2}%
-}
-
-% Increase margin for notes (if needed)
-% \\setlength{\\marginparwidth}{2.5cm}
+export const MARGIN_NOTES_PREAMBLE = `
+% Margin notes for comments
+\\usepackage[colorinlistoftodos,textsize=scriptsize]{todonotes}
+\\usepackage{xcolor}
+
+% Define comment colors by author
+\\definecolor{commentblue}{RGB}{59, 130, 246}
+\\definecolor{commentgreen}{RGB}{34, 197, 94}
+\\definecolor{commentorange}{RGB}{249, 115, 22}
+\\definecolor{commentpurple}{RGB}{168, 85, 247}
+\\definecolor{commentgray}{RGB}{107, 114, 128}
+
+% Custom margin note command
+\\newcommand{\\margincomment}[2][]{%
+  \\todo[linecolor=commentblue,backgroundcolor=commentblue!10,bordercolor=commentblue,size=\\scriptsize,#1]{#2}%
+}
+
+% Author-specific commands
+\\newcommand{\\reviewercomment}[2]{%
+  \\todo[linecolor=commentgreen,backgroundcolor=commentgreen!10,bordercolor=commentgreen,size=\\scriptsize]{\\textbf{#1:} #2}%
+}
+
+% Increase margin for notes (if needed)
+% \\setlength{\\marginparwidth}{2.5cm}
 `;
 /**
  * Simpler preamble using marginpar (no extra packages needed)
  */
-export const SIMPLE_MARGIN_PREAMBLE = `
-% Simple margin notes for comments
-\\usepackage{xcolor}
-\\definecolor{commentcolor}{RGB}{59, 130, 246}
-
-\\newcommand{\\margincomment}[1]{%
-  \\marginpar{\\raggedright\\scriptsize\\textcolor{commentcolor}{#1}}%
-}
+export const SIMPLE_MARGIN_PREAMBLE = `
+% Simple margin notes for comments
+\\usepackage{xcolor}
+\\definecolor{commentcolor}{RGB}{59, 130, 246}
+
+\\newcommand{\\margincomment}[1]{%
+  \\marginpar{\\raggedright\\scriptsize\\textcolor{commentcolor}{#1}}%
+}
 `;
 /**
  * Convert CriticMarkup comments to LaTeX margin notes
@@ -110,12 +110,12 @@ export function convertTrackChangesToLatex(markdown) {
     result = result.replace(/\{~~([^~]+)~>([^~]+)~~\}/g, (match, oldText, newText) => {
         return `\\textcolor{red}{\\sout{${escapeLatex(oldText)}}}\\textcolor{green}{${escapeLatex(newText)}}`;
     });
-    const preamble = `
-% Track changes visualization
-\\usepackage{xcolor}
-\\usepackage[normalem]{ulem}
-\\definecolor{green}{RGB}{34, 197, 94}
-\\definecolor{red}{RGB}{239, 68, 68}
+    const preamble = `
+% Track changes visualization
+\\usepackage{xcolor}
+\\usepackage[normalem]{ulem}
+\\definecolor{green}{RGB}{34, 197, 94}
+\\definecolor{red}{RGB}{239, 68, 68}
 `;
     return { markdown: result, preamble };
 }
@@ -131,16 +131,16 @@ export function getCombinedPreamble(options = {}) {
         preamble += useTodonotes ? MARGIN_NOTES_PREAMBLE : SIMPLE_MARGIN_PREAMBLE;
     }
     if (trackChanges) {
-        preamble += `
-% Track changes visualization
-\\usepackage[normalem]{ulem}
+        preamble += `
+% Track changes visualization
+\\usepackage[normalem]{ulem}
 `;
         if (!comments) {
             preamble += `\\usepackage{xcolor}\n`;
         }
-        preamble += `
-\\definecolor{insertgreen}{RGB}{34, 197, 94}
-\\definecolor{deletered}{RGB}{239, 68, 68}
+        preamble += `
+\\definecolor{insertgreen}{RGB}{34, 197, 94}
+\\definecolor{deletered}{RGB}{239, 68, 68}
 `;
     }
     return preamble;

package/dist/lib/plugins.js

@@ -128,63 +128,63 @@ export function getPluginDirs() {
  */
 export function createProfileTemplate(journalName) {
     const id = journalName.toLowerCase().replace(/\s+/g, '-');
-    return `# Custom journal profile for ${journalName}
-# Save as: ~/.rev/profiles/${id}.yaml (user-wide)
-# Or: .rev/profiles/${id}.yaml (project-specific)
-
-id: ${id}
-name: "${journalName}"
-url: "https://journal-website.com/author-guidelines"
-
-# Word count limits
-wordLimit:
-  main: 8000      # null for no limit
-  abstract: 300
-  title: null     # characters
-
-# Reference requirements
-references:
-  max: null       # null for no limit
-  doiRequired: true
-
-# Figure/table limits
-figures:
-  max: 8
-  combinedWithTables: false
-
-# Required sections
-sections:
-  required:
-    - Abstract
-    - Introduction
-    - Methods
-    - Results
-    - Discussion
-  methodsPosition: null  # 'end' or 'before-results'
-
-# Keywords
-keywords:
-  min: 4
-  max: 8
-
-# Other requirements
-dataAvailability: true
-highlights: false
-graphicalAbstract: false
-
-# Build formatting defaults (applied via rev build -j ${id})
-# formatting:
-#   csl: "${id}"            # CSL style name or path
-#   pdf:
-#     fontsize: 12pt
-#     geometry: margin=1in
-#     linestretch: 1.5
-#     numbersections: false
-#   docx:
-#     reference: null       # Path to reference .docx template
-#   crossref:
-#     figPrefix: [Fig., Figs.]
-#     tblPrefix: [Table, Tables]
+    return `# Custom journal profile for ${journalName}
+# Save as: ~/.rev/profiles/${id}.yaml (user-wide)
+# Or: .rev/profiles/${id}.yaml (project-specific)
+
+id: ${id}
+name: "${journalName}"
+url: "https://journal-website.com/author-guidelines"
+
+# Word count limits
+wordLimit:
+  main: 8000      # null for no limit
+  abstract: 300
+  title: null     # characters
+
+# Reference requirements
+references:
+  max: null       # null for no limit
+  doiRequired: true
+
+# Figure/table limits
+figures:
+  max: 8
+  combinedWithTables: false
+
+# Required sections
+sections:
+  required:
+    - Abstract
+    - Introduction
+    - Methods
+    - Results
+    - Discussion
+  methodsPosition: null  # 'end' or 'before-results'
+
+# Keywords
+keywords:
+  min: 4
+  max: 8
+
+# Other requirements
+dataAvailability: true
+highlights: false
+graphicalAbstract: false
+
+# Build formatting defaults (applied via rev build -j ${id})
+# formatting:
+#   csl: "${id}"            # CSL style name or path
+#   pdf:
+#     fontsize: 12pt
+#     geometry: margin=1in
+#     linestretch: 1.5
+#     numbersections: false
+#   docx:
+#     reference: null       # Path to reference .docx template
+#   crossref:
+#     figPrefix: [Fig., Figs.]
+#     tblPrefix: [Table, Tables]
 `;
 }
 /**