docrev 0.10.0 → 0.10.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (126) hide show
  1. package/.gitattributes +1 -1
  2. package/CHANGELOG.md +173 -164
  3. package/PLAN-tables-and-postprocess.md +850 -850
  4. package/README.md +431 -431
  5. package/bin/rev.js +11 -11
  6. package/bin/rev.ts +145 -145
  7. package/completions/rev.bash +127 -127
  8. package/completions/rev.ps1 +210 -210
  9. package/completions/rev.zsh +207 -207
  10. package/dist/lib/anchor-match.d.ts +1 -1
  11. package/dist/lib/anchor-match.d.ts.map +1 -1
  12. package/dist/lib/anchor-match.js +17 -47
  13. package/dist/lib/anchor-match.js.map +1 -1
  14. package/dist/lib/build.js +4 -4
  15. package/dist/lib/commands/context.d.ts +1 -1
  16. package/dist/lib/commands/context.d.ts.map +1 -1
  17. package/dist/lib/commands/context.js +1 -1
  18. package/dist/lib/commands/context.js.map +1 -1
  19. package/dist/lib/commands/sections.js +7 -7
  20. package/dist/lib/commands/sections.js.map +1 -1
  21. package/dist/lib/commands/sync.d.ts.map +1 -1
  22. package/dist/lib/commands/sync.js +15 -14
  23. package/dist/lib/commands/sync.js.map +1 -1
  24. package/dist/lib/commands/utilities.js +164 -164
  25. package/dist/lib/commands/verify-anchors.js +6 -6
  26. package/dist/lib/commands/verify-anchors.js.map +1 -1
  27. package/dist/lib/commands/word-tools.js +8 -8
  28. package/dist/lib/grammar.js +3 -3
  29. package/dist/lib/macro-filter.lua +201 -201
  30. package/dist/lib/pdf-comments.js +44 -44
  31. package/dist/lib/plugins.js +57 -57
  32. package/dist/lib/pptx-color-filter.lua +37 -37
  33. package/dist/lib/pptx-themes.js +115 -115
  34. package/dist/lib/sections.d.ts +35 -0
  35. package/dist/lib/sections.d.ts.map +1 -1
  36. package/dist/lib/sections.js +81 -0
  37. package/dist/lib/sections.js.map +1 -1
  38. package/dist/lib/spelling.js +2 -2
  39. package/dist/lib/templates.js +387 -387
  40. package/dist/lib/themes.js +51 -51
  41. package/docs-src/build.py +113 -113
  42. package/docs-src/extra.css +208 -208
  43. package/docs-src/md-to-html.lua +6 -6
  44. package/docs-src/template.html +116 -116
  45. package/eslint.config.js +27 -27
  46. package/lib/anchor-match.ts +276 -308
  47. package/lib/annotations.ts +644 -644
  48. package/lib/build.ts +1766 -1766
  49. package/lib/citations.ts +160 -160
  50. package/lib/commands/build.ts +855 -855
  51. package/lib/commands/citations.ts +515 -515
  52. package/lib/commands/comments.ts +1050 -1050
  53. package/lib/commands/context.ts +176 -174
  54. package/lib/commands/core.ts +309 -309
  55. package/lib/commands/doi.ts +435 -435
  56. package/lib/commands/file-ops.ts +372 -372
  57. package/lib/commands/history.ts +320 -320
  58. package/lib/commands/index.ts +87 -87
  59. package/lib/commands/init.ts +259 -259
  60. package/lib/commands/merge-resolve.ts +378 -378
  61. package/lib/commands/preview.ts +178 -178
  62. package/lib/commands/project-info.ts +244 -244
  63. package/lib/commands/quality.ts +517 -517
  64. package/lib/commands/response.ts +454 -454
  65. package/lib/commands/section-boundaries.ts +82 -82
  66. package/lib/commands/sections.ts +451 -451
  67. package/lib/commands/sync.ts +709 -706
  68. package/lib/commands/text-ops.ts +449 -449
  69. package/lib/commands/utilities.ts +448 -448
  70. package/lib/commands/verify-anchors.ts +272 -272
  71. package/lib/commands/word-tools.ts +340 -340
  72. package/lib/comment-realign.ts +517 -517
  73. package/lib/config.ts +84 -84
  74. package/lib/crossref.ts +781 -781
  75. package/lib/csl.ts +191 -191
  76. package/lib/dependencies.ts +98 -98
  77. package/lib/diff-engine.ts +465 -465
  78. package/lib/doi-cache.ts +115 -115
  79. package/lib/doi.ts +897 -897
  80. package/lib/equations.ts +506 -506
  81. package/lib/errors.ts +346 -346
  82. package/lib/format.ts +541 -541
  83. package/lib/git.ts +326 -326
  84. package/lib/grammar.ts +303 -303
  85. package/lib/image-registry.ts +180 -180
  86. package/lib/import.ts +911 -911
  87. package/lib/journals.ts +543 -543
  88. package/lib/macro-filter.lua +201 -201
  89. package/lib/macros.ts +273 -273
  90. package/lib/merge.ts +633 -633
  91. package/lib/orcid.ts +144 -144
  92. package/lib/pdf-comments.ts +263 -263
  93. package/lib/pdf-import.ts +524 -524
  94. package/lib/plugins.ts +362 -362
  95. package/lib/postprocess.ts +188 -188
  96. package/lib/pptx-color-filter.lua +37 -37
  97. package/lib/pptx-template.ts +469 -469
  98. package/lib/pptx-themes.ts +483 -483
  99. package/lib/protect-restore.ts +520 -520
  100. package/lib/rate-limiter.ts +94 -94
  101. package/lib/response.ts +197 -197
  102. package/lib/restore-references.ts +240 -240
  103. package/lib/review.ts +327 -327
  104. package/lib/schema.ts +488 -488
  105. package/lib/scientific-words.ts +73 -73
  106. package/lib/sections.ts +425 -335
  107. package/lib/slides.ts +756 -756
  108. package/lib/spelling.ts +334 -334
  109. package/lib/templates.ts +526 -526
  110. package/lib/themes.ts +742 -742
  111. package/lib/trackchanges.ts +247 -247
  112. package/lib/tui.ts +450 -450
  113. package/lib/types.ts +550 -550
  114. package/lib/undo.ts +250 -250
  115. package/lib/utils.ts +69 -69
  116. package/lib/variables.ts +179 -179
  117. package/lib/word-extraction.ts +806 -806
  118. package/lib/word.ts +643 -643
  119. package/lib/wordcomments.ts +840 -840
  120. package/mkdocs.yml +64 -64
  121. package/package.json +137 -137
  122. package/scripts/postbuild.js +47 -47
  123. package/skill/REFERENCE.md +539 -539
  124. package/skill/SKILL.md +295 -295
  125. package/tsconfig.json +26 -26
  126. package/types/index.d.ts +525 -525
package/lib/plugins.ts CHANGED
@@ -1,362 +1,362 @@
1
- /**
2
- * Plugin system for custom journal profiles and export formats
3
- *
4
- * Users can add custom profiles in:
5
- * - Project: .rev/profiles/*.yaml
6
- * - User: ~/.rev/profiles/*.yaml
7
- */
8
-
9
- import * as fs from 'fs';
10
- import * as path from 'path';
11
- import * as os from 'os';
12
- import * as yaml from 'yaml';
13
-
14
- /**
15
- * Journal profile requirements
16
- */
17
- interface ProfileRequirements {
18
- wordLimit?: Record<string, number | null>;
19
- references?: Record<string, unknown>;
20
- figures?: Record<string, unknown>;
21
- sections?: Record<string, unknown>;
22
- authors?: Record<string, unknown>;
23
- keywords?: { min?: number; max?: number } | null;
24
- dataAvailability?: boolean;
25
- [key: string]: unknown;
26
- }
27
-
28
- /**
29
- * Journal profile
30
- */
31
- interface Profile {
32
- id?: string;
33
- name: string;
34
- url?: string | null;
35
- custom?: boolean;
36
- requirements?: ProfileRequirements;
37
- [key: string]: unknown;
38
- }
39
-
40
- /**
41
- * Journal formatting defaults
42
- */
43
- interface ProfileFormatting {
44
- csl?: string;
45
- pdf?: Record<string, unknown>;
46
- docx?: Record<string, unknown>;
47
- crossref?: Record<string, unknown>;
48
- [key: string]: unknown;
49
- }
50
-
51
- /**
52
- * Normalized profile
53
- */
54
- interface NormalizedProfile {
55
- name: string;
56
- url: string | null;
57
- custom: boolean;
58
- requirements: ProfileRequirements;
59
- formatting?: ProfileFormatting;
60
- }
61
-
62
- /**
63
- * Profile list entry
64
- */
65
- interface ProfileListEntry {
66
- id: string;
67
- name: string;
68
- source: 'user' | 'project';
69
- path: string;
70
- }
71
-
72
- /**
73
- * Plugin directories info
74
- */
75
- interface PluginDirsInfo {
76
- user: string;
77
- project: string;
78
- userExists: boolean;
79
- projectExists: boolean;
80
- }
81
-
82
- // Plugin directories
83
- const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
- const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
-
86
- /**
87
- * Load all custom journal profiles
88
- */
89
- export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
- const profiles: Record<string, NormalizedProfile> = {};
91
-
92
- // Load user profiles first (lower priority)
93
- const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
- Object.assign(profiles, userProfiles);
95
-
96
- // Load project profiles (higher priority, can override)
97
- const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
- Object.assign(profiles, projectProfiles);
99
-
100
- return profiles;
101
- }
102
-
103
- /**
104
- * Load profiles from a directory
105
- */
106
- function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
- const profiles: Record<string, NormalizedProfile> = {};
108
-
109
- if (!fs.existsSync(dir)) {
110
- return profiles;
111
- }
112
-
113
- try {
114
- const files = fs.readdirSync(dir).filter(f =>
115
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
- );
117
-
118
- for (const file of files) {
119
- try {
120
- const filePath = path.join(dir, file);
121
- const content = fs.readFileSync(filePath, 'utf-8');
122
- const profile = file.endsWith('.json')
123
- ? JSON.parse(content)
124
- : yaml.parse(content);
125
-
126
- if (validateProfile(profile)) {
127
- const id = profile.id || path.basename(file, path.extname(file));
128
- profiles[id] = normalizeProfile(profile);
129
- }
130
- } catch (err: unknown) {
131
- const message = err instanceof Error ? err.message : String(err);
132
- console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
- }
134
- }
135
- } catch {
136
- // Directory not readable
137
- }
138
-
139
- return profiles;
140
- }
141
-
142
- /**
143
- * Validate a profile structure
144
- */
145
- function validateProfile(profile: unknown): profile is Profile {
146
- if (!profile || typeof profile !== 'object') {
147
- return false;
148
- }
149
-
150
- const p = profile as Profile;
151
-
152
- // Must have a name
153
- if (!p.name || typeof p.name !== 'string') {
154
- return false;
155
- }
156
-
157
- // Requirements must be an object if present
158
- if (p.requirements && typeof p.requirements !== 'object') {
159
- return false;
160
- }
161
-
162
- return true;
163
- }
164
-
165
- /**
166
- * Normalize profile to standard structure
167
- */
168
- function normalizeProfile(profile: Profile): NormalizedProfile {
169
- const normalized: NormalizedProfile = {
170
- name: profile.name,
171
- url: profile.url || null,
172
- custom: true,
173
- requirements: {
174
- wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
- references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
- figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
- sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
- authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
- keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
- dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
- ...profile.requirements,
182
- },
183
- };
184
-
185
- // Pass through formatting if present
186
- const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
- if (formatting && typeof formatting === 'object') {
188
- normalized.formatting = formatting;
189
- }
190
-
191
- return normalized;
192
- }
193
-
194
- /**
195
- * Initialize plugin directories
196
- */
197
- export function initPluginDir(project = false): string {
198
- const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
-
200
- if (!fs.existsSync(dir)) {
201
- fs.mkdirSync(dir, { recursive: true });
202
- }
203
-
204
- return dir;
205
- }
206
-
207
- /**
208
- * Get plugin directories info
209
- */
210
- export function getPluginDirs(): PluginDirsInfo {
211
- return {
212
- user: USER_PLUGINS_DIR,
213
- project: PROJECT_PLUGINS_DIR,
214
- userExists: fs.existsSync(USER_PLUGINS_DIR),
215
- projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
- };
217
- }
218
-
219
- /**
220
- * Create a sample profile template
221
- */
222
- export function createProfileTemplate(journalName: string): string {
223
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
-
225
- return `# Custom journal profile for ${journalName}
226
- # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
- # Or: .rev/profiles/${id}.yaml (project-specific)
228
-
229
- id: ${id}
230
- name: "${journalName}"
231
- url: "https://journal-website.com/author-guidelines"
232
-
233
- # Word count limits
234
- wordLimit:
235
- main: 8000 # null for no limit
236
- abstract: 300
237
- title: null # characters
238
-
239
- # Reference requirements
240
- references:
241
- max: null # null for no limit
242
- doiRequired: true
243
-
244
- # Figure/table limits
245
- figures:
246
- max: 8
247
- combinedWithTables: false
248
-
249
- # Required sections
250
- sections:
251
- required:
252
- - Abstract
253
- - Introduction
254
- - Methods
255
- - Results
256
- - Discussion
257
- methodsPosition: null # 'end' or 'before-results'
258
-
259
- # Keywords
260
- keywords:
261
- min: 4
262
- max: 8
263
-
264
- # Other requirements
265
- dataAvailability: true
266
- highlights: false
267
- graphicalAbstract: false
268
-
269
- # Build formatting defaults (applied via rev build -j ${id})
270
- # formatting:
271
- # csl: "${id}" # CSL style name or path
272
- # pdf:
273
- # fontsize: 12pt
274
- # geometry: margin=1in
275
- # linestretch: 1.5
276
- # numbersections: false
277
- # docx:
278
- # reference: null # Path to reference .docx template
279
- # crossref:
280
- # figPrefix: [Fig., Figs.]
281
- # tblPrefix: [Table, Tables]
282
- `;
283
- }
284
-
285
- /**
286
- * Save a profile template
287
- */
288
- export function saveProfileTemplate(journalName: string, project = false): string {
289
- const dir = initPluginDir(project);
290
- const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
- const filePath = path.join(dir, `${id}.yaml`);
292
-
293
- if (fs.existsSync(filePath)) {
294
- throw new Error(`Profile already exists: ${filePath}`);
295
- }
296
-
297
- const content = createProfileTemplate(journalName);
298
- fs.writeFileSync(filePath, content, 'utf-8');
299
-
300
- return filePath;
301
- }
302
-
303
- /**
304
- * List all custom profiles
305
- */
306
- export function listCustomProfiles(): ProfileListEntry[] {
307
- const result: ProfileListEntry[] = [];
308
-
309
- // User profiles
310
- if (fs.existsSync(USER_PLUGINS_DIR)) {
311
- const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
- );
314
-
315
- for (const file of files) {
316
- try {
317
- const filePath = path.join(USER_PLUGINS_DIR, file);
318
- const content = fs.readFileSync(filePath, 'utf-8');
319
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
-
321
- if (validateProfile(profile)) {
322
- result.push({
323
- id: profile.id || path.basename(file, path.extname(file)),
324
- name: profile.name,
325
- source: 'user',
326
- path: filePath,
327
- });
328
- }
329
- } catch {
330
- // Skip invalid profiles
331
- }
332
- }
333
- }
334
-
335
- // Project profiles
336
- if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
- const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
- f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
- );
340
-
341
- for (const file of files) {
342
- try {
343
- const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
- const content = fs.readFileSync(filePath, 'utf-8');
345
- const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
-
347
- if (validateProfile(profile)) {
348
- result.push({
349
- id: profile.id || path.basename(file, path.extname(file)),
350
- name: profile.name,
351
- source: 'project',
352
- path: filePath,
353
- });
354
- }
355
- } catch {
356
- // Skip invalid profiles
357
- }
358
- }
359
- }
360
-
361
- return result;
362
- }
1
+ /**
2
+ * Plugin system for custom journal profiles and export formats
3
+ *
4
+ * Users can add custom profiles in:
5
+ * - Project: .rev/profiles/*.yaml
6
+ * - User: ~/.rev/profiles/*.yaml
7
+ */
8
+
9
+ import * as fs from 'fs';
10
+ import * as path from 'path';
11
+ import * as os from 'os';
12
+ import * as yaml from 'yaml';
13
+
14
+ /**
15
+ * Journal profile requirements
16
+ */
17
+ interface ProfileRequirements {
18
+ wordLimit?: Record<string, number | null>;
19
+ references?: Record<string, unknown>;
20
+ figures?: Record<string, unknown>;
21
+ sections?: Record<string, unknown>;
22
+ authors?: Record<string, unknown>;
23
+ keywords?: { min?: number; max?: number } | null;
24
+ dataAvailability?: boolean;
25
+ [key: string]: unknown;
26
+ }
27
+
28
+ /**
29
+ * Journal profile
30
+ */
31
+ interface Profile {
32
+ id?: string;
33
+ name: string;
34
+ url?: string | null;
35
+ custom?: boolean;
36
+ requirements?: ProfileRequirements;
37
+ [key: string]: unknown;
38
+ }
39
+
40
+ /**
41
+ * Journal formatting defaults
42
+ */
43
+ interface ProfileFormatting {
44
+ csl?: string;
45
+ pdf?: Record<string, unknown>;
46
+ docx?: Record<string, unknown>;
47
+ crossref?: Record<string, unknown>;
48
+ [key: string]: unknown;
49
+ }
50
+
51
+ /**
52
+ * Normalized profile
53
+ */
54
+ interface NormalizedProfile {
55
+ name: string;
56
+ url: string | null;
57
+ custom: boolean;
58
+ requirements: ProfileRequirements;
59
+ formatting?: ProfileFormatting;
60
+ }
61
+
62
+ /**
63
+ * Profile list entry
64
+ */
65
+ interface ProfileListEntry {
66
+ id: string;
67
+ name: string;
68
+ source: 'user' | 'project';
69
+ path: string;
70
+ }
71
+
72
+ /**
73
+ * Plugin directories info
74
+ */
75
+ interface PluginDirsInfo {
76
+ user: string;
77
+ project: string;
78
+ userExists: boolean;
79
+ projectExists: boolean;
80
+ }
81
+
82
+ // Plugin directories
83
+ const USER_PLUGINS_DIR = path.join(os.homedir(), '.rev', 'profiles');
84
+ const PROJECT_PLUGINS_DIR = path.join(process.cwd(), '.rev', 'profiles');
85
+
86
+ /**
87
+ * Load all custom journal profiles
88
+ */
89
+ export function loadCustomProfiles(): Record<string, NormalizedProfile> {
90
+ const profiles: Record<string, NormalizedProfile> = {};
91
+
92
+ // Load user profiles first (lower priority)
93
+ const userProfiles = loadProfilesFromDir(USER_PLUGINS_DIR);
94
+ Object.assign(profiles, userProfiles);
95
+
96
+ // Load project profiles (higher priority, can override)
97
+ const projectProfiles = loadProfilesFromDir(PROJECT_PLUGINS_DIR);
98
+ Object.assign(profiles, projectProfiles);
99
+
100
+ return profiles;
101
+ }
102
+
103
+ /**
104
+ * Load profiles from a directory
105
+ */
106
+ function loadProfilesFromDir(dir: string): Record<string, NormalizedProfile> {
107
+ const profiles: Record<string, NormalizedProfile> = {};
108
+
109
+ if (!fs.existsSync(dir)) {
110
+ return profiles;
111
+ }
112
+
113
+ try {
114
+ const files = fs.readdirSync(dir).filter(f =>
115
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
116
+ );
117
+
118
+ for (const file of files) {
119
+ try {
120
+ const filePath = path.join(dir, file);
121
+ const content = fs.readFileSync(filePath, 'utf-8');
122
+ const profile = file.endsWith('.json')
123
+ ? JSON.parse(content)
124
+ : yaml.parse(content);
125
+
126
+ if (validateProfile(profile)) {
127
+ const id = profile.id || path.basename(file, path.extname(file));
128
+ profiles[id] = normalizeProfile(profile);
129
+ }
130
+ } catch (err: unknown) {
131
+ const message = err instanceof Error ? err.message : String(err);
132
+ console.error(`Warning: Failed to load profile ${file}: ${message}`);
133
+ }
134
+ }
135
+ } catch {
136
+ // Directory not readable
137
+ }
138
+
139
+ return profiles;
140
+ }
141
+
142
+ /**
143
+ * Validate a profile structure
144
+ */
145
+ function validateProfile(profile: unknown): profile is Profile {
146
+ if (!profile || typeof profile !== 'object') {
147
+ return false;
148
+ }
149
+
150
+ const p = profile as Profile;
151
+
152
+ // Must have a name
153
+ if (!p.name || typeof p.name !== 'string') {
154
+ return false;
155
+ }
156
+
157
+ // Requirements must be an object if present
158
+ if (p.requirements && typeof p.requirements !== 'object') {
159
+ return false;
160
+ }
161
+
162
+ return true;
163
+ }
164
+
165
+ /**
166
+ * Normalize profile to standard structure
167
+ */
168
+ function normalizeProfile(profile: Profile): NormalizedProfile {
169
+ const normalized: NormalizedProfile = {
170
+ name: profile.name,
171
+ url: profile.url || null,
172
+ custom: true,
173
+ requirements: {
174
+ wordLimit: profile.requirements?.wordLimit || (profile as { wordLimit?: Record<string, number> }).wordLimit || {},
175
+ references: profile.requirements?.references || (profile as { references?: Record<string, unknown> }).references || {},
176
+ figures: profile.requirements?.figures || (profile as { figures?: Record<string, unknown> }).figures || {},
177
+ sections: profile.requirements?.sections || (profile as { sections?: Record<string, unknown> }).sections || {},
178
+ authors: profile.requirements?.authors || (profile as { authors?: Record<string, unknown> }).authors || {},
179
+ keywords: profile.requirements?.keywords || (profile as { keywords?: { min?: number; max?: number } }).keywords || null,
180
+ dataAvailability: profile.requirements?.dataAvailability || (profile as { dataAvailability?: boolean }).dataAvailability || false,
181
+ ...profile.requirements,
182
+ },
183
+ };
184
+
185
+ // Pass through formatting if present
186
+ const formatting = (profile as { formatting?: ProfileFormatting }).formatting;
187
+ if (formatting && typeof formatting === 'object') {
188
+ normalized.formatting = formatting;
189
+ }
190
+
191
+ return normalized;
192
+ }
193
+
194
+ /**
195
+ * Initialize plugin directories
196
+ */
197
+ export function initPluginDir(project = false): string {
198
+ const dir = project ? PROJECT_PLUGINS_DIR : USER_PLUGINS_DIR;
199
+
200
+ if (!fs.existsSync(dir)) {
201
+ fs.mkdirSync(dir, { recursive: true });
202
+ }
203
+
204
+ return dir;
205
+ }
206
+
207
+ /**
208
+ * Get plugin directories info
209
+ */
210
+ export function getPluginDirs(): PluginDirsInfo {
211
+ return {
212
+ user: USER_PLUGINS_DIR,
213
+ project: PROJECT_PLUGINS_DIR,
214
+ userExists: fs.existsSync(USER_PLUGINS_DIR),
215
+ projectExists: fs.existsSync(PROJECT_PLUGINS_DIR),
216
+ };
217
+ }
218
+
219
+ /**
220
+ * Create a sample profile template
221
+ */
222
+ export function createProfileTemplate(journalName: string): string {
223
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
224
+
225
+ return `# Custom journal profile for ${journalName}
226
+ # Save as: ~/.rev/profiles/${id}.yaml (user-wide)
227
+ # Or: .rev/profiles/${id}.yaml (project-specific)
228
+
229
+ id: ${id}
230
+ name: "${journalName}"
231
+ url: "https://journal-website.com/author-guidelines"
232
+
233
+ # Word count limits
234
+ wordLimit:
235
+ main: 8000 # null for no limit
236
+ abstract: 300
237
+ title: null # characters
238
+
239
+ # Reference requirements
240
+ references:
241
+ max: null # null for no limit
242
+ doiRequired: true
243
+
244
+ # Figure/table limits
245
+ figures:
246
+ max: 8
247
+ combinedWithTables: false
248
+
249
+ # Required sections
250
+ sections:
251
+ required:
252
+ - Abstract
253
+ - Introduction
254
+ - Methods
255
+ - Results
256
+ - Discussion
257
+ methodsPosition: null # 'end' or 'before-results'
258
+
259
+ # Keywords
260
+ keywords:
261
+ min: 4
262
+ max: 8
263
+
264
+ # Other requirements
265
+ dataAvailability: true
266
+ highlights: false
267
+ graphicalAbstract: false
268
+
269
+ # Build formatting defaults (applied via rev build -j ${id})
270
+ # formatting:
271
+ # csl: "${id}" # CSL style name or path
272
+ # pdf:
273
+ # fontsize: 12pt
274
+ # geometry: margin=1in
275
+ # linestretch: 1.5
276
+ # numbersections: false
277
+ # docx:
278
+ # reference: null # Path to reference .docx template
279
+ # crossref:
280
+ # figPrefix: [Fig., Figs.]
281
+ # tblPrefix: [Table, Tables]
282
+ `;
283
+ }
284
+
285
+ /**
286
+ * Save a profile template
287
+ */
288
+ export function saveProfileTemplate(journalName: string, project = false): string {
289
+ const dir = initPluginDir(project);
290
+ const id = journalName.toLowerCase().replace(/\s+/g, '-');
291
+ const filePath = path.join(dir, `${id}.yaml`);
292
+
293
+ if (fs.existsSync(filePath)) {
294
+ throw new Error(`Profile already exists: ${filePath}`);
295
+ }
296
+
297
+ const content = createProfileTemplate(journalName);
298
+ fs.writeFileSync(filePath, content, 'utf-8');
299
+
300
+ return filePath;
301
+ }
302
+
303
+ /**
304
+ * List all custom profiles
305
+ */
306
+ export function listCustomProfiles(): ProfileListEntry[] {
307
+ const result: ProfileListEntry[] = [];
308
+
309
+ // User profiles
310
+ if (fs.existsSync(USER_PLUGINS_DIR)) {
311
+ const files = fs.readdirSync(USER_PLUGINS_DIR).filter(f =>
312
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
313
+ );
314
+
315
+ for (const file of files) {
316
+ try {
317
+ const filePath = path.join(USER_PLUGINS_DIR, file);
318
+ const content = fs.readFileSync(filePath, 'utf-8');
319
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
320
+
321
+ if (validateProfile(profile)) {
322
+ result.push({
323
+ id: profile.id || path.basename(file, path.extname(file)),
324
+ name: profile.name,
325
+ source: 'user',
326
+ path: filePath,
327
+ });
328
+ }
329
+ } catch {
330
+ // Skip invalid profiles
331
+ }
332
+ }
333
+ }
334
+
335
+ // Project profiles
336
+ if (fs.existsSync(PROJECT_PLUGINS_DIR)) {
337
+ const files = fs.readdirSync(PROJECT_PLUGINS_DIR).filter(f =>
338
+ f.endsWith('.yaml') || f.endsWith('.yml') || f.endsWith('.json')
339
+ );
340
+
341
+ for (const file of files) {
342
+ try {
343
+ const filePath = path.join(PROJECT_PLUGINS_DIR, file);
344
+ const content = fs.readFileSync(filePath, 'utf-8');
345
+ const profile = file.endsWith('.json') ? JSON.parse(content) : yaml.parse(content);
346
+
347
+ if (validateProfile(profile)) {
348
+ result.push({
349
+ id: profile.id || path.basename(file, path.extname(file)),
350
+ name: profile.name,
351
+ source: 'project',
352
+ path: filePath,
353
+ });
354
+ }
355
+ } catch {
356
+ // Skip invalid profiles
357
+ }
358
+ }
359
+ }
360
+
361
+ return result;
362
+ }