docrev 0.10.0 → 0.10.1

package/lib/commands/context.ts

@@ -1,174 +1,176 @@
-/**
- * Shared context for command modules
- *
- * This module provides shared utilities and state that command modules need.
- */
-
-import chalk from 'chalk';
-import * as fs from 'fs';
-import * as path from 'path';
-import * as fmt from '../format.js';
-
-// Global flags (set by main CLI)
-export let quietMode = false;
-export let jsonMode = false;
-
-export function setQuietMode(value: boolean): void {
-  quietMode = value;
-}
-
-export function setJsonMode(value: boolean): void {
-  jsonMode = value;
-  if (value) {
-    chalk.level = 0;
-  }
-}
-
-// JSON output helper
-export function jsonOutput(data: unknown): void {
-  console.log(JSON.stringify(data, null, 2));
-}
-
-// Find files by extension
-export function findFiles(ext: string, cwd: string = process.cwd()): string[] {
-  try {
-    return fs.readdirSync(cwd)
-      .filter(f => f.endsWith(ext) && !f.startsWith('.'));
-  } catch {
-    return [];
-  }
-}
-
-// Re-export common dependencies
-export { chalk, fs, path, fmt };
-
-// Re-export from lib modules
-export {
-  parseAnnotations,
-  stripAnnotations,
-  countAnnotations,
-  getComments,
-  setCommentStatus,
-  hasAnnotations,
-  getTrackChanges,
-  applyDecision,
-  cleanupOrphanedMarkers,
-} from '../annotations.js';
-
-export {
-  interactiveReview,
-  listComments,
-  interactiveCommentReview,
-} from '../review.js';
-
-export {
-  generateConfig,
-  loadConfig,
-  saveConfig,
-  matchHeading,
-  extractSectionsFromText,
-  splitAnnotatedPaper,
-  getOrderedSections,
-} from '../sections.js';
-
-export {
-  buildRegistry,
-  detectHardcodedRefs,
-  convertHardcodedRefs,
-  getRefStatus,
-  formatRegistry,
-} from '../crossref.js';
-
-export {
-  build,
-  loadConfig as loadBuildConfig,
-  formatBuildResults,
-} from '../build.js';
-
-export {
-  hasPandoc,
-  hasPandocCrossref,
-  hasLatex,
-  checkDependencies,
-  getInstallInstructions,
-} from '../dependencies.js';
-
-export {
-  getTemplate,
-  listTemplates,
-  generateCustomTemplate,
-} from '../templates.js';
-
-export {
-  getUserName,
-  setUserName,
-  getConfigPath,
-  getDefaultSections,
-  setDefaultSections,
-  loadUserConfig,
-  saveUserConfig,
-} from '../config.js';
-
-export { inlineDiffPreview } from '../format.js';
-
-export { countWords } from '../utils.js';
-
-export {
-  parseCommentsWithReplies,
-  collectComments,
-  generateResponseLetter,
-  groupByReviewer,
-} from '../response.js';
-
-export {
-  validateCitations,
-  getCitationStats,
-} from '../citations.js';
-
-export {
-  extractEquations,
-  getEquationStats,
-  createEquationsDoc,
-  extractEquationsFromWord,
-  getWordEquationStats,
-} from '../equations.js';
-
-export {
-  parseBibEntries,
-  checkBibDois,
-  fetchBibtex,
-  addToBib,
-  isValidDoiFormat,
-  lookupDoi,
-  lookupMissingDois,
-} from '../doi.js';
-
-export {
-  clearDoiCache,
-  getDoiCacheStats,
-} from '../doi-cache.js';
-
-export {
-  formatError,
-  getFileNotFoundSuggestions,
-  getDependencySuggestions,
-  getAnnotationSuggestions,
-  getBuildSuggestions,
-  exitWithError,
-  requireFile,
-} from '../errors.js';
-
-export {
-  listJournals,
-  getJournalProfile,
-  validateManuscript,
-  validateProject,
-} from '../journals.js';
-
-export {
-  listCustomProfiles,
-  saveProfileTemplate,
-  getPluginDirs,
-} from '../plugins.js';
-
-export { tuiCommentReview } from '../tui.js';
+/**
+ * Shared context for command modules
+ *
+ * This module provides shared utilities and state that command modules need.
+ */
+
+import chalk from 'chalk';
+import * as fs from 'fs';
+import * as path from 'path';
+import * as fmt from '../format.js';
+
+// Global flags (set by main CLI)
+export let quietMode = false;
+export let jsonMode = false;
+
+export function setQuietMode(value: boolean): void {
+  quietMode = value;
+}
+
+export function setJsonMode(value: boolean): void {
+  jsonMode = value;
+  if (value) {
+    chalk.level = 0;
+  }
+}
+
+// JSON output helper
+export function jsonOutput(data: unknown): void {
+  console.log(JSON.stringify(data, null, 2));
+}
+
+// Find files by extension
+export function findFiles(ext: string, cwd: string = process.cwd()): string[] {
+  try {
+    return fs.readdirSync(cwd)
+      .filter(f => f.endsWith(ext) && !f.startsWith('.'));
+  } catch {
+    return [];
+  }
+}
+
+// Re-export common dependencies
+export { chalk, fs, path, fmt };
+
+// Re-export from lib modules
+export {
+  parseAnnotations,
+  stripAnnotations,
+  countAnnotations,
+  getComments,
+  setCommentStatus,
+  hasAnnotations,
+  getTrackChanges,
+  applyDecision,
+  cleanupOrphanedMarkers,
+} from '../annotations.js';
+
+export {
+  interactiveReview,
+  listComments,
+  interactiveCommentReview,
+} from '../review.js';
+
+export {
+  generateConfig,
+  loadConfig,
+  saveConfig,
+  deriveSectionsFromRev,
+  resolveSectionsConfig,
+  matchHeading,
+  extractSectionsFromText,
+  splitAnnotatedPaper,
+  getOrderedSections,
+} from '../sections.js';
+
+export {
+  buildRegistry,
+  detectHardcodedRefs,
+  convertHardcodedRefs,
+  getRefStatus,
+  formatRegistry,
+} from '../crossref.js';
+
+export {
+  build,
+  loadConfig as loadBuildConfig,
+  formatBuildResults,
+} from '../build.js';
+
+export {
+  hasPandoc,
+  hasPandocCrossref,
+  hasLatex,
+  checkDependencies,
+  getInstallInstructions,
+} from '../dependencies.js';
+
+export {
+  getTemplate,
+  listTemplates,
+  generateCustomTemplate,
+} from '../templates.js';
+
+export {
+  getUserName,
+  setUserName,
+  getConfigPath,
+  getDefaultSections,
+  setDefaultSections,
+  loadUserConfig,
+  saveUserConfig,
+} from '../config.js';
+
+export { inlineDiffPreview } from '../format.js';
+
+export { countWords } from '../utils.js';
+
+export {
+  parseCommentsWithReplies,
+  collectComments,
+  generateResponseLetter,
+  groupByReviewer,
+} from '../response.js';
+
+export {
+  validateCitations,
+  getCitationStats,
+} from '../citations.js';
+
+export {
+  extractEquations,
+  getEquationStats,
+  createEquationsDoc,
+  extractEquationsFromWord,
+  getWordEquationStats,
+} from '../equations.js';
+
+export {
+  parseBibEntries,
+  checkBibDois,
+  fetchBibtex,
+  addToBib,
+  isValidDoiFormat,
+  lookupDoi,
+  lookupMissingDois,
+} from '../doi.js';
+
+export {
+  clearDoiCache,
+  getDoiCacheStats,
+} from '../doi-cache.js';
+
+export {
+  formatError,
+  getFileNotFoundSuggestions,
+  getDependencySuggestions,
+  getAnnotationSuggestions,
+  getBuildSuggestions,
+  exitWithError,
+  requireFile,
+} from '../errors.js';
+
+export {
+  listJournals,
+  getJournalProfile,
+  validateManuscript,
+  validateProject,
+} from '../journals.js';
+
+export {
+  listCustomProfiles,
+  saveProfileTemplate,
+  getPluginDirs,
+} from '../plugins.js';
+
+export { tuiCommentReview } from '../tui.js';