diff-grok 1.0.10 → 1.1.0

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Files changed (212) hide show
  1. package/.claude/settings.local.json +11 -0
  2. package/CLAUDE.md +98 -0
  3. package/README.MD +100 -24
  4. package/images/E5.png +0 -0
  5. package/images/HIRES.png +0 -0
  6. package/images/OREGO.png +0 -0
  7. package/images/POLL-full.png +0 -0
  8. package/images/ROBER.png +0 -0
  9. package/images/VDP0L.png +0 -0
  10. package/index.js +1 -1
  11. package/index.js.map +1 -1
  12. package/index.ts +2 -1
  13. package/jest.config.js +1 -0
  14. package/package.json +1 -1
  15. package/src/examples/bioreactor.js +125 -0
  16. package/src/examples/bioreactor.js.map +1 -0
  17. package/src/examples/bioreactor.ts +132 -0
  18. package/src/examples/cyclic-model.js +3 -1
  19. package/src/examples/cyclic-model.js.map +1 -1
  20. package/src/examples/cyclic-model.ts +3 -1
  21. package/src/solver-tools/ab4-method.js +332 -0
  22. package/src/solver-tools/ab4-method.js.map +1 -0
  23. package/src/solver-tools/ab4-method.ts +395 -0
  24. package/src/solver-tools/ab5-method.js +334 -0
  25. package/src/solver-tools/ab5-method.js.map +1 -0
  26. package/src/solver-tools/ab5-method.ts +397 -0
  27. package/src/solver-tools/index.js +6 -0
  28. package/src/solver-tools/index.js.map +1 -1
  29. package/src/solver-tools/index.ts +6 -0
  30. package/src/solver-tools/lsoda/blas.js +246 -0
  31. package/src/solver-tools/lsoda/blas.js.map +1 -0
  32. package/src/solver-tools/lsoda/blas.ts +267 -0
  33. package/src/solver-tools/lsoda/cfode.js +73 -0
  34. package/src/solver-tools/lsoda/cfode.js.map +1 -0
  35. package/src/solver-tools/lsoda/cfode.ts +83 -0
  36. package/src/solver-tools/lsoda/common.js +94 -0
  37. package/src/solver-tools/lsoda/common.js.map +1 -0
  38. package/src/solver-tools/lsoda/common.ts +135 -0
  39. package/src/solver-tools/lsoda/corfailure.js +25 -0
  40. package/src/solver-tools/lsoda/corfailure.js.map +1 -0
  41. package/src/solver-tools/lsoda/corfailure.ts +30 -0
  42. package/src/solver-tools/lsoda/correction.js +101 -0
  43. package/src/solver-tools/lsoda/correction.js.map +1 -0
  44. package/src/solver-tools/lsoda/correction.ts +119 -0
  45. package/src/solver-tools/lsoda/dense.js +110 -0
  46. package/src/solver-tools/lsoda/dense.js.map +1 -0
  47. package/src/solver-tools/lsoda/dense.ts +129 -0
  48. package/src/solver-tools/lsoda/index.js +4 -0
  49. package/src/solver-tools/lsoda/index.js.map +1 -0
  50. package/src/solver-tools/lsoda/index.ts +5 -0
  51. package/src/solver-tools/lsoda/intdy.js +43 -0
  52. package/src/solver-tools/lsoda/intdy.js.map +1 -0
  53. package/src/solver-tools/lsoda/intdy.ts +50 -0
  54. package/src/solver-tools/lsoda/lsoda.js +567 -0
  55. package/src/solver-tools/lsoda/lsoda.js.map +1 -0
  56. package/src/solver-tools/lsoda/lsoda.ts +632 -0
  57. package/src/solver-tools/lsoda/methodswitch.js +97 -0
  58. package/src/solver-tools/lsoda/methodswitch.js.map +1 -0
  59. package/src/solver-tools/lsoda/methodswitch.ts +107 -0
  60. package/src/solver-tools/lsoda/orderswitch.js +86 -0
  61. package/src/solver-tools/lsoda/orderswitch.js.map +1 -0
  62. package/src/solver-tools/lsoda/orderswitch.ts +95 -0
  63. package/src/solver-tools/lsoda/prja.js +43 -0
  64. package/src/solver-tools/lsoda/prja.js.map +1 -0
  65. package/src/solver-tools/lsoda/prja.ts +49 -0
  66. package/src/solver-tools/lsoda/scaleh.js +30 -0
  67. package/src/solver-tools/lsoda/scaleh.js.map +1 -0
  68. package/src/solver-tools/lsoda/scaleh.ts +33 -0
  69. package/src/solver-tools/lsoda/solsy.js +14 -0
  70. package/src/solver-tools/lsoda/solsy.js.map +1 -0
  71. package/src/solver-tools/lsoda/solsy.ts +18 -0
  72. package/src/solver-tools/lsoda/stoda.js +259 -0
  73. package/src/solver-tools/lsoda/stoda.js.map +1 -0
  74. package/src/solver-tools/lsoda/stoda.ts +286 -0
  75. package/src/solver-tools/lsoda-method.js +120 -0
  76. package/src/solver-tools/lsoda-method.js.map +1 -0
  77. package/src/solver-tools/lsoda-method.ts +136 -0
  78. package/src/solver-tools/mrt-method.js +81 -18
  79. package/src/solver-tools/mrt-method.js.map +1 -1
  80. package/src/solver-tools/mrt-method.ts +111 -21
  81. package/src/solver-tools/rk3-method.js +210 -0
  82. package/src/solver-tools/rk3-method.js.map +1 -0
  83. package/src/solver-tools/rk3-method.ts +257 -0
  84. package/src/solver-tools/rk4-method.js +236 -0
  85. package/src/solver-tools/rk4-method.js.map +1 -0
  86. package/src/solver-tools/rk4-method.ts +286 -0
  87. package/src/solver-tools/rkdp-method.js +247 -0
  88. package/src/solver-tools/rkdp-method.js.map +1 -0
  89. package/src/solver-tools/rkdp-method.ts +300 -0
  90. package/src/solver-tools/ros34prw-method.js +1 -1
  91. package/src/solver-tools/ros34prw-method.js.map +1 -1
  92. package/src/solver-tools/ros34prw-method.ts +1 -1
  93. package/src/solver-tools/ros3prw-method.js +1 -1
  94. package/src/solver-tools/ros3prw-method.js.map +1 -1
  95. package/src/solver-tools/ros3prw-method.ts +1 -1
  96. package/src/solver-tools/solver-defs.js +6 -0
  97. package/src/solver-tools/solver-defs.js.map +1 -1
  98. package/src/solver-tools/solver-defs.ts +6 -0
  99. package/src/tests/correctness.test.js +6 -4
  100. package/src/tests/correctness.test.js.map +1 -1
  101. package/src/tests/correctness.test.ts +6 -4
  102. package/src/tests/lsoda-lib-correctness.test.js +223 -0
  103. package/src/tests/lsoda-lib-correctness.test.js.map +1 -0
  104. package/src/tests/lsoda-lib-correctness.test.ts +283 -0
  105. package/src/tests/lsoda-lib-performance.test.js +95 -0
  106. package/src/tests/lsoda-lib-performance.test.js.map +1 -0
  107. package/src/tests/lsoda-lib-performance.test.ts +126 -0
  108. package/src/tests/performance.test.js +10 -8
  109. package/src/tests/performance.test.js.map +1 -1
  110. package/src/tests/performance.test.ts +10 -8
  111. package/src/tests/test-defs.js +14 -1
  112. package/src/tests/test-defs.js.map +1 -1
  113. package/src/tests/test-defs.ts +15 -1
  114. package/src/worker-tools/solving.js +13 -1
  115. package/src/worker-tools/solving.js.map +1 -1
  116. package/src/worker-tools/solving.ts +20 -1
  117. package/docs/.nojekyll +0 -1
  118. package/docs/assets/hierarchy.js +0 -1
  119. package/docs/assets/highlight.css +0 -99
  120. package/docs/assets/icons.js +0 -18
  121. package/docs/assets/icons.svg +0 -1
  122. package/docs/assets/main.js +0 -60
  123. package/docs/assets/navigation.js +0 -1
  124. package/docs/assets/search.js +0 -1
  125. package/docs/assets/style.css +0 -1633
  126. package/docs/classes/BasicModelPipelineCreator.html +0 -10
  127. package/docs/classes/Callback.html +0 -7
  128. package/docs/classes/CyclicModelPipelineCreator.html +0 -10
  129. package/docs/classes/IterCheckerCallback.html +0 -8
  130. package/docs/classes/PipelineCreator.html +0 -6
  131. package/docs/classes/TimeCheckerCallback.html +0 -8
  132. package/docs/classes/UpdatesModelPipelineCreator.html +0 -10
  133. package/docs/functions/applyPipeline.html +0 -9
  134. package/docs/functions/getCallback.html +0 -3
  135. package/docs/functions/getIVP.html +0 -6
  136. package/docs/functions/getInputVector.html +0 -2
  137. package/docs/functions/getIvp2WebWorker.html +0 -6
  138. package/docs/functions/getJScode.html +0 -6
  139. package/docs/functions/getOutputNames.html +0 -4
  140. package/docs/functions/getPipelineCreator.html +0 -7
  141. package/docs/functions/mrt.html +0 -11
  142. package/docs/functions/printE5.html +0 -76
  143. package/docs/functions/printHires.html +0 -76
  144. package/docs/functions/printOrego.html +0 -66
  145. package/docs/functions/printPollution.html +0 -163
  146. package/docs/functions/printRobertson.html +0 -60
  147. package/docs/functions/printVdpol.html +0 -66
  148. package/docs/functions/ros34prw.html +0 -8
  149. package/docs/functions/ros3prw.html +0 -8
  150. package/docs/functions/solveIvp.html +0 -5
  151. package/docs/hierarchy.html +0 -1
  152. package/docs/index.html +0 -683
  153. package/docs/media/CONTRIBUTING.md +0 -74
  154. package/docs/media/POLL.png +0 -0
  155. package/docs/media/VDPOL.png +0 -0
  156. package/docs/media/acid-prod.gif +0 -0
  157. package/docs/media/basic-use.js +0 -40
  158. package/docs/media/basic-use.js.map +0 -1
  159. package/docs/media/basic-use.ts +0 -44
  160. package/docs/media/check-methods.js +0 -59
  161. package/docs/media/check-methods.js.map +0 -1
  162. package/docs/media/check-methods.ts +0 -81
  163. package/docs/media/corr-probs.js +0 -132
  164. package/docs/media/corr-probs.js.map +0 -1
  165. package/docs/media/corr-probs.ts +0 -155
  166. package/docs/media/cyclic-model.js +0 -100
  167. package/docs/media/cyclic-model.js.map +0 -1
  168. package/docs/media/cyclic-model.ts +0 -110
  169. package/docs/media/e5.js +0 -36
  170. package/docs/media/e5.js.map +0 -1
  171. package/docs/media/e5.ts +0 -36
  172. package/docs/media/hires.js +0 -39
  173. package/docs/media/hires.js.map +0 -1
  174. package/docs/media/hires.ts +0 -40
  175. package/docs/media/model-updates.js +0 -112
  176. package/docs/media/model-updates.js.map +0 -1
  177. package/docs/media/model-updates.ts +0 -122
  178. package/docs/media/orego.js +0 -24
  179. package/docs/media/orego.js.map +0 -1
  180. package/docs/media/orego.ts +0 -25
  181. package/docs/media/pipeline-use.js +0 -87
  182. package/docs/media/pipeline-use.js.map +0 -1
  183. package/docs/media/pipeline-use.ts +0 -98
  184. package/docs/media/pollution.js +0 -132
  185. package/docs/media/pollution.js.map +0 -1
  186. package/docs/media/pollution.ts +0 -133
  187. package/docs/media/print-benchmark.js +0 -581
  188. package/docs/media/print-benchmark.js.map +0 -1
  189. package/docs/media/print-benchmark.ts +0 -594
  190. package/docs/media/robertson.js +0 -19
  191. package/docs/media/robertson.js.map +0 -1
  192. package/docs/media/robertson.ts +0 -19
  193. package/docs/media/scripting.js +0 -30
  194. package/docs/media/scripting.js.map +0 -1
  195. package/docs/media/scripting.ts +0 -35
  196. package/docs/media/vdpol.js +0 -17
  197. package/docs/media/vdpol.js.map +0 -1
  198. package/docs/media/vdpol.ts +0 -17
  199. package/docs/modules.html +0 -1
  200. package/docs/types/Arg.html +0 -12
  201. package/docs/types/DifEqs.html +0 -8
  202. package/docs/types/Func.html +0 -7
  203. package/docs/types/IVP.html +0 -40
  204. package/docs/types/IVP2WebWorker.html +0 -12
  205. package/docs/types/Input.html +0 -8
  206. package/docs/types/Loop.html +0 -7
  207. package/docs/types/ODEs.html +0 -31
  208. package/docs/types/Output.html +0 -6
  209. package/docs/types/Pipeline.html +0 -6
  210. package/docs/types/SolverOptions.html +0 -8
  211. package/docs/types/Update.html +0 -9
  212. package/docs/types/Wrapper.html +0 -8
@@ -0,0 +1,267 @@
1
+ // BLAS linear algebra routines
2
+ // All arrays are 1-indexed (element [0] unused), matching the C/Fortran convention.
3
+
4
+ /**
5
+ * Compute dy = da * dx + dy
6
+ * Arrays are 1-indexed with stride incx/incy.
7
+ */
8
+ export function daxpy(
9
+ n: number, da: number, dx: Float64Array, incx: number,
10
+ dy: Float64Array, incy: number,
11
+ ): void {
12
+ if (n < 0 || da === 0.) return;
13
+
14
+ if (incx !== incy || incx < 1) {
15
+ let ix = 1;
16
+ let iy = 1;
17
+ if (incx < 0) ix = (-n + 1) * incx + 1;
18
+ if (incy < 0) iy = (-n + 1) * incy + 1;
19
+ for (let i = 1; i <= n; i++) {
20
+ dy[iy] = dy[iy] + da * dx[ix];
21
+ ix += incx;
22
+ iy += incy;
23
+ }
24
+ return;
25
+ }
26
+
27
+ if (incx === 1) {
28
+ const m = n % 4;
29
+ if (m !== 0) {
30
+ for (let i = 1; i <= m; i++)
31
+ dy[i] = dy[i] + da * dx[i];
32
+ if (n < 4) return;
33
+ }
34
+ for (let i = m + 1; i <= n; i += 4) {
35
+ dy[i] = dy[i] + da * dx[i];
36
+ dy[i + 1] = dy[i + 1] + da * dx[i + 1];
37
+ dy[i + 2] = dy[i + 2] + da * dx[i + 2];
38
+ dy[i + 3] = dy[i + 3] + da * dx[i + 3];
39
+ }
40
+ return;
41
+ }
42
+
43
+ for (let i = 1; i <= n * incx; i += incx)
44
+ dy[i] = da * dx[i] + dy[i];
45
+ }
46
+
47
+ /**
48
+ * Compute dot product dx . dy
49
+ * Arrays are 1-indexed with stride incx/incy.
50
+ */
51
+ export function ddot(
52
+ n: number, dx: Float64Array, incx: number,
53
+ dy: Float64Array, incy: number,
54
+ ): number {
55
+ let dotprod = 0.;
56
+ if (n <= 0) return dotprod;
57
+
58
+ if (incx !== incy || incx < 1) {
59
+ let ix = 1;
60
+ let iy = 1;
61
+ if (incx < 0) ix = (-n + 1) * incx + 1;
62
+ if (incy < 0) iy = (-n + 1) * incy + 1;
63
+ for (let i = 1; i <= n; i++) {
64
+ dotprod += dx[ix] * dy[iy];
65
+ ix += incx;
66
+ iy += incy;
67
+ }
68
+ return dotprod;
69
+ }
70
+
71
+ if (incx === 1) {
72
+ for (let i = 1; i <= n; i++)
73
+ dotprod += dx[i] * dy[i];
74
+ return dotprod;
75
+ }
76
+
77
+ for (let i = 1; i <= n * incx; i += incx)
78
+ dotprod += dx[i] * dy[i];
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+ return dotprod;
80
+ }
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+
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+ /**
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+ * Scale vector: dx = da * dx
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+ * Array is 1-indexed with stride incx.
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+ */
86
+ export function dscal(n: number, da: number, dx: Float64Array, incx: number): void {
87
+ if (n <= 0) return;
88
+
89
+ if (incx !== 1) {
90
+ for (let i = 1; i <= n * incx; i += incx)
91
+ dx[i] = da * dx[i];
92
+ return;
93
+ }
94
+
95
+ const m = n % 5;
96
+ if (m !== 0) {
97
+ for (let i = 1; i <= m; i++)
98
+ dx[i] = da * dx[i];
99
+ if (n < 5) return;
100
+ }
101
+ for (let i = m + 1; i <= n; i += 5) {
102
+ dx[i] = da * dx[i];
103
+ dx[i + 1] = da * dx[i + 1];
104
+ dx[i + 2] = da * dx[i + 2];
105
+ dx[i + 3] = da * dx[i + 3];
106
+ dx[i + 4] = da * dx[i + 4];
107
+ }
108
+ }
109
+
110
+ /**
111
+ * Find index of element with maximum absolute value.
112
+ * Array is 1-indexed. Returns 1-based index (0 if n <= 0).
113
+ */
114
+ export function idamax(n: number, dx: Float64Array, incx: number): number {
115
+ let xindex = 0;
116
+ if (n <= 0) return xindex;
117
+ xindex = 1;
118
+ if (n <= 1 || incx <= 0) return xindex;
119
+
120
+ if (incx !== 1) {
121
+ let dmax = Math.abs(dx[1]);
122
+ let ii = 2;
123
+ for (let i = 1 + incx; i <= n * incx; i += incx) {
124
+ const xmag = Math.abs(dx[i]);
125
+ if (xmag > dmax) {
126
+ xindex = ii;
127
+ dmax = xmag;
128
+ }
129
+ ii++;
130
+ }
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+ return xindex;
132
+ }
133
+
134
+ let dmax = Math.abs(dx[1]);
135
+ for (let i = 2; i <= n; i++) {
136
+ const xmag = Math.abs(dx[i]);
137
+ if (xmag > dmax) {
138
+ xindex = i;
139
+ dmax = xmag;
140
+ }
141
+ }
142
+ return xindex;
143
+ }
144
+
145
+ /**
146
+ * LU factorization by Gaussian elimination with partial pivoting.
147
+ * a: 2D matrix (a[i][j], 1-indexed rows and columns)
148
+ * n: matrix dimension
149
+ * ipvt: pivot indices output (1-indexed)
150
+ * Returns info: 0 = normal, k = U[k][k] == 0 (singular).
151
+ */
152
+ export function dgefa(a: Float64Array[], n: number, ipvt: Int32Array): number {
153
+ let info = 0;
154
+
155
+ for (let k = 1; k <= n - 1; k++) {
156
+ // Find pivot index. a[k] + k - 1 in C => subarray from index k
157
+ const j = idamax(n - k + 1, a[k].subarray(k - 1), 1) + k - 1;
158
+ ipvt[k] = j;
159
+
160
+ if (a[k][j] === 0.) {
161
+ info = k;
162
+ continue;
163
+ }
164
+
165
+ // Interchange if necessary
166
+ if (j !== k) {
167
+ const t = a[k][j];
168
+ a[k][j] = a[k][k];
169
+ a[k][k] = t;
170
+ }
171
+
172
+ // Compute multipliers
173
+ const t = -1. / a[k][k];
174
+ dscal(n - k, t, a[k].subarray(k), 1);
175
+
176
+ // Column elimination with row indexing
177
+ for (let i = k + 1; i <= n; i++) {
178
+ const t2 = a[i][j];
179
+ if (j !== k) {
180
+ a[i][j] = a[i][k];
181
+ a[i][k] = t2;
182
+ }
183
+ daxpy(n - k, t2, a[k].subarray(k), 1, a[i].subarray(k), 1);
184
+ }
185
+ }
186
+
187
+ ipvt[n] = n;
188
+ if (a[n][n] === 0.) info = n;
189
+ return info;
190
+ }
191
+
192
+ /**
193
+ * Solve linear system using LU factors from dgefa.
194
+ * a: LU factored matrix (1-indexed)
195
+ * n: dimension
196
+ * ipvt: pivot indices (1-indexed)
197
+ * b: right-hand side on input, solution on output (1-indexed)
198
+ * job: 0 = solve A*x=b, nonzero = solve A^T*x=b
199
+ */
200
+ export function dgesl(
201
+ a: Float64Array[], n: number, ipvt: Int32Array,
202
+ b: Float64Array, job: number,
203
+ ): void {
204
+ if (job === 0) {
205
+ // Solve L * y = b
206
+ for (let k = 1; k <= n; k++) {
207
+ const t = ddot(k - 1, a[k], 1, b, 1);
208
+ b[k] = (b[k] - t) / a[k][k];
209
+ }
210
+ // Solve U * x = y
211
+ for (let k = n - 1; k >= 1; k--) {
212
+ b[k] = b[k] + ddot(n - k, a[k].subarray(k), 1, b.subarray(k), 1);
213
+ const j = ipvt[k];
214
+ if (j !== k) {
215
+ const t = b[j];
216
+ b[j] = b[k];
217
+ b[k] = t;
218
+ }
219
+ }
220
+ return;
221
+ }
222
+
223
+ // Solve Transpose(U) * y = b
224
+ for (let k = 1; k <= n - 1; k++) {
225
+ const j = ipvt[k];
226
+ const t = b[j];
227
+ if (j !== k) {
228
+ b[j] = b[k];
229
+ b[k] = t;
230
+ }
231
+ daxpy(n - k, t, a[k].subarray(k), 1, b.subarray(k), 1);
232
+ }
233
+ // Solve Transpose(L) * x = y
234
+ for (let k = n; k >= 1; k--) {
235
+ b[k] = b[k] / a[k][k];
236
+ const t = -b[k];
237
+ daxpy(k - 1, t, a[k], 1, b, 1);
238
+ }
239
+ }
240
+
241
+ /**
242
+ * Weighted max-norm: max(i=1..n) |v[i]| * w[i]
243
+ * Arrays are 1-indexed.
244
+ */
245
+ export function vmnorm(n: number, v: Float64Array, w: Float64Array): number {
246
+ let vm = 0.;
247
+ for (let i = 1; i <= n; i++)
248
+ vm = Math.max(vm, Math.abs(v[i]) * w[i]);
249
+ return vm;
250
+ }
251
+
252
+ /**
253
+ * Weighted matrix norm consistent with vmnorm.
254
+ * fnorm = max(i=1..n) ( w[i] * sum(j=1..n) |a[i][j]| / w[j] )
255
+ * a is 2D (1-indexed), w is 1-indexed.
256
+ */
257
+ export function fnorm(n: number, a: Float64Array[], w: Float64Array): number {
258
+ let an = 0.;
259
+ for (let i = 1; i <= n; i++) {
260
+ let sum = 0.;
261
+ const ap1 = a[i];
262
+ for (let j = 1; j <= n; j++)
263
+ sum += Math.abs(ap1[j]) / w[j];
264
+ an = Math.max(an, sum * w[i]);
265
+ }
266
+ return an;
267
+ }
@@ -0,0 +1,73 @@
1
+ /**
2
+ * Set coefficients for the current method.
3
+ * Computes elco and tesco arrays for all orders.
4
+ * meth=1: Adams (orders 1-12), meth=2: BDF (orders 1-5).
5
+ */
6
+ export function cfode(ctx, meth) {
7
+ const c = ctx.common;
8
+ const pc = new Float64Array(13);
9
+ if (meth === 1) {
10
+ c.elco[1][1] = 1.;
11
+ c.elco[1][2] = 1.;
12
+ c.tesco[1][1] = 0.;
13
+ c.tesco[1][2] = 2.;
14
+ c.tesco[2][1] = 1.;
15
+ c.tesco[12][3] = 0.;
16
+ pc[1] = 1.;
17
+ let rqfac = 1.;
18
+ for (let nq = 2; nq <= 12; nq++) {
19
+ const rq1fac = rqfac;
20
+ rqfac = rqfac / nq;
21
+ const nqm1 = nq - 1;
22
+ const fnqm1 = nqm1;
23
+ const nqp1 = nq + 1;
24
+ // Form coefficients of p(x)*(x+nq-1)
25
+ pc[nq] = 0.;
26
+ for (let i = nq; i >= 2; i--)
27
+ pc[i] = pc[i - 1] + fnqm1 * pc[i];
28
+ pc[1] = fnqm1 * pc[1];
29
+ // Compute integral, -1 to 0, of p(x) and x*p(x)
30
+ let pint = pc[1];
31
+ let xpin = pc[1] / 2.;
32
+ let tsign = 1.;
33
+ for (let i = 2; i <= nq; i++) {
34
+ tsign = -tsign;
35
+ pint += tsign * pc[i] / i;
36
+ xpin += tsign * pc[i] / (i + 1);
37
+ }
38
+ // Store coefficients in elco and tesco
39
+ c.elco[nq][1] = pint * rq1fac;
40
+ c.elco[nq][2] = 1.;
41
+ for (let i = 2; i <= nq; i++)
42
+ c.elco[nq][i + 1] = rq1fac * pc[i] / i;
43
+ const agamq = rqfac * xpin;
44
+ const ragq = 1. / agamq;
45
+ c.tesco[nq][2] = ragq;
46
+ if (nq < 12)
47
+ c.tesco[nqp1][1] = ragq * rqfac / nqp1;
48
+ c.tesco[nqm1][3] = ragq;
49
+ }
50
+ return;
51
+ }
52
+ // meth = 2 (BDF)
53
+ pc[1] = 1.;
54
+ let rq1fac = 1.;
55
+ for (let nq = 1; nq <= 5; nq++) {
56
+ const fnq = nq;
57
+ const nqp1 = nq + 1;
58
+ // Form coefficients of p(x)*(x+nq)
59
+ pc[nqp1] = 0.;
60
+ for (let i = nq + 1; i >= 2; i--)
61
+ pc[i] = pc[i - 1] + fnq * pc[i];
62
+ pc[1] *= fnq;
63
+ // Store coefficients in elco and tesco
64
+ for (let i = 1; i <= nqp1; i++)
65
+ c.elco[nq][i] = pc[i] / pc[2];
66
+ c.elco[nq][2] = 1.;
67
+ c.tesco[nq][1] = rq1fac;
68
+ c.tesco[nq][2] = nqp1 / c.elco[nq][1];
69
+ c.tesco[nq][3] = (nq + 2) / c.elco[nq][1];
70
+ rq1fac /= fnq;
71
+ }
72
+ }
73
+ //# sourceMappingURL=cfode.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"cfode.js","sourceRoot":"","sources":["cfode.ts"],"names":[],"mappings":"AAEA;;;;GAIG;AACH,MAAM,UAAU,KAAK,CAAC,GAAiB,EAAE,IAAY;IACnD,MAAM,CAAC,GAAG,GAAG,CAAC,MAAO,CAAC;IACtB,MAAM,EAAE,GAAG,IAAI,YAAY,CAAC,EAAE,CAAC,CAAC;IAEhC,IAAI,IAAI,KAAK,CAAC,EAAE,CAAC;QACf,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QAClB,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QAClB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACpB,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACX,IAAI,KAAK,GAAG,EAAE,CAAC;QAEf,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,IAAI,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC;YAChC,MAAM,MAAM,GAAG,KAAK,CAAC;YACrB,KAAK,GAAG,KAAK,GAAG,EAAE,CAAC;YACnB,MAAM,IAAI,GAAG,EAAE,GAAG,CAAC,CAAC;YACpB,MAAM,KAAK,GAAG,IAAI,CAAC;YACnB,MAAM,IAAI,GAAG,EAAE,GAAG,CAAC,CAAC;YAEpB,qCAAqC;YACrC,EAAE,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC;YACZ,KAAK,IAAI,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE;gBAC1B,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,KAAK,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;YACpC,EAAE,CAAC,CAAC,CAAC,GAAG,KAAK,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;YAEtB,gDAAgD;YAChD,IAAI,IAAI,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;YACjB,IAAI,IAAI,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;YACtB,IAAI,KAAK,GAAG,EAAE,CAAC;YACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,EAAE,EAAE,CAAC;gBAC7B,KAAK,GAAG,CAAC,KAAK,CAAC;gBACf,IAAI,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;gBAC1B,IAAI,IAAI,KAAK,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;YAClC,CAAC;YAED,uCAAuC;YACvC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,MAAM,CAAC;YAC9B,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;YACnB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,EAAE,EAAE,CAAC,EAAE;gBAC1B,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,MAAM,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;YACzC,MAAM,KAAK,GAAG,KAAK,GAAG,IAAI,CAAC;YAC3B,MAAM,IAAI,GAAG,EAAE,GAAG,KAAK,CAAC;YACxB,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;YACtB,IAAI,EAAE,GAAG,EAAE;gBACT,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,KAAK,GAAG,IAAI,CAAC;YACzC,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC;QAC1B,CAAC;QACD,OAAO;IACT,CAAC;IAED,iBAAiB;IACjB,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;IACX,IAAI,MAAM,GAAG,EAAE,CAAC;IAEhB,KAAK,IAAI,EAAE,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,EAAE,EAAE,CAAC;QAC/B,MAAM,GAAG,GAAG,EAAE,CAAC;QACf,MAAM,IAAI,GAAG,EAAE,GAAG,CAAC,CAAC;QAEpB,mCAAmC;QACnC,EAAE,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC;QACd,KAAK,IAAI,CAAC,GAAG,EAAE,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,EAAE,CAAC,EAAE;YAC9B,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,GAAG,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;QAClC,EAAE,CAAC,CAAC,CAAC,IAAI,GAAG,CAAC;QAEb,uCAAuC;QACvC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,IAAI,EAAE,CAAC,EAAE;YAC5B,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;QAChC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;QACnB,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,MAAM,CAAC;QACxB,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QACtC,CAAC,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1C,MAAM,IAAI,GAAG,CAAC;IAChB,CAAC;AACH,CAAC"}
@@ -0,0 +1,83 @@
1
+ import {LsodaContext} from './common';
2
+
3
+ /**
4
+ * Set coefficients for the current method.
5
+ * Computes elco and tesco arrays for all orders.
6
+ * meth=1: Adams (orders 1-12), meth=2: BDF (orders 1-5).
7
+ */
8
+ export function cfode(ctx: LsodaContext, meth: number): void {
9
+ const c = ctx.common!;
10
+ const pc = new Float64Array(13);
11
+
12
+ if (meth === 1) {
13
+ c.elco[1][1] = 1.;
14
+ c.elco[1][2] = 1.;
15
+ c.tesco[1][1] = 0.;
16
+ c.tesco[1][2] = 2.;
17
+ c.tesco[2][1] = 1.;
18
+ c.tesco[12][3] = 0.;
19
+ pc[1] = 1.;
20
+ let rqfac = 1.;
21
+
22
+ for (let nq = 2; nq <= 12; nq++) {
23
+ const rq1fac = rqfac;
24
+ rqfac = rqfac / nq;
25
+ const nqm1 = nq - 1;
26
+ const fnqm1 = nqm1;
27
+ const nqp1 = nq + 1;
28
+
29
+ // Form coefficients of p(x)*(x+nq-1)
30
+ pc[nq] = 0.;
31
+ for (let i = nq; i >= 2; i--)
32
+ pc[i] = pc[i - 1] + fnqm1 * pc[i];
33
+ pc[1] = fnqm1 * pc[1];
34
+
35
+ // Compute integral, -1 to 0, of p(x) and x*p(x)
36
+ let pint = pc[1];
37
+ let xpin = pc[1] / 2.;
38
+ let tsign = 1.;
39
+ for (let i = 2; i <= nq; i++) {
40
+ tsign = -tsign;
41
+ pint += tsign * pc[i] / i;
42
+ xpin += tsign * pc[i] / (i + 1);
43
+ }
44
+
45
+ // Store coefficients in elco and tesco
46
+ c.elco[nq][1] = pint * rq1fac;
47
+ c.elco[nq][2] = 1.;
48
+ for (let i = 2; i <= nq; i++)
49
+ c.elco[nq][i + 1] = rq1fac * pc[i] / i;
50
+ const agamq = rqfac * xpin;
51
+ const ragq = 1. / agamq;
52
+ c.tesco[nq][2] = ragq;
53
+ if (nq < 12)
54
+ c.tesco[nqp1][1] = ragq * rqfac / nqp1;
55
+ c.tesco[nqm1][3] = ragq;
56
+ }
57
+ return;
58
+ }
59
+
60
+ // meth = 2 (BDF)
61
+ pc[1] = 1.;
62
+ let rq1fac = 1.;
63
+
64
+ for (let nq = 1; nq <= 5; nq++) {
65
+ const fnq = nq;
66
+ const nqp1 = nq + 1;
67
+
68
+ // Form coefficients of p(x)*(x+nq)
69
+ pc[nqp1] = 0.;
70
+ for (let i = nq + 1; i >= 2; i--)
71
+ pc[i] = pc[i - 1] + fnq * pc[i];
72
+ pc[1] *= fnq;
73
+
74
+ // Store coefficients in elco and tesco
75
+ for (let i = 1; i <= nqp1; i++)
76
+ c.elco[nq][i] = pc[i] / pc[2];
77
+ c.elco[nq][2] = 1.;
78
+ c.tesco[nq][1] = rq1fac;
79
+ c.tesco[nq][2] = nqp1 / c.elco[nq][1];
80
+ c.tesco[nq][3] = (nq + 2) / c.elco[nq][1];
81
+ rq1fac /= fnq;
82
+ }
83
+ }
@@ -0,0 +1,94 @@
1
+ // Constants from common.h
2
+ export const ETA = 2.2204460492503131e-16;
3
+ export const SQRTETA = 1.4901161193847656e-08;
4
+ export const CCMAX = 0.3;
5
+ export const MAXCOR = 3;
6
+ export const MSBP = 20;
7
+ export const MXNCF = 10;
8
+ export const RATIO = 5.0;
9
+ // Stability region limits for Adams method (from common.c)
10
+ export const sm1 = [
11
+ 0., 0.5, 0.575, 0.55, 0.45, 0.35, 0.25, 0.2, 0.15, 0.1, 0.075, 0.05, 0.025,
12
+ ];
13
+ // Method switch coefficients (from methodswitch.c)
14
+ // cm1 and cm2 are calculated from tesco/elco 1 and 2 formula in cfode.c
15
+ export const cm1 = [
16
+ 0, 2.0, 5.999999999999998, 4.0,
17
+ 1.5780346820809881, 0.44444444444444464, 0.09712509625876042, 0.017636684303350972,
18
+ 0.002666977809498494, 0.00033760591160674403, 0.000035714285714285924, 3.1001984126984256e-06,
19
+ 2.1543369643350994e-07,
20
+ ];
21
+ export const cm2 = [
22
+ 0, 2.0, 1.5, 0.6666666666666667,
23
+ 0.20833333333333348, 0.04999999999999998, 0.09712509625876042, 0.017636684303350972,
24
+ 0.002666977809498494, 0.00033760591160674403, 0.000035714285714285924, 3.1001984126984256e-06,
25
+ 2.1543369643350994e-07,
26
+ ];
27
+ // Internal solver state (mirrors lsoda_common_t)
28
+ export class LsodaCommon {
29
+ constructor() {
30
+ // Solution history (2D: yh[j][i], 1-indexed)
31
+ this.yh = [];
32
+ // Working matrix for Jacobian/LU (2D: wm[i][j], 1-indexed)
33
+ this.wm = [];
34
+ // Error weights (1-indexed)
35
+ this.ewt = new Float64Array(0);
36
+ // Saved function values (1-indexed)
37
+ this.savf = new Float64Array(0);
38
+ // Accumulated corrections (1-indexed)
39
+ this.acor = new Float64Array(0);
40
+ // Pivot indices for LU (1-indexed)
41
+ this.ipvt = new Int32Array(0);
42
+ // Step size
43
+ this.h = 0;
44
+ this.hu = 0;
45
+ this.rc = 0;
46
+ this.tn = 0;
47
+ this.tsw = 0;
48
+ this.pdnorm = 0;
49
+ // Convergence
50
+ this.crate = 0;
51
+ this.el = new Float64Array(14);
52
+ this.hold = 0;
53
+ this.rmax = 0;
54
+ this.pdest = 0;
55
+ this.pdlast = 0;
56
+ // Method coefficients (2D arrays, 1-indexed)
57
+ this.elco = [];
58
+ this.tesco = [];
59
+ // Counters and flags
60
+ this.ialth = 0;
61
+ this.ipup = 0;
62
+ this.nslp = 0;
63
+ this.icount = 0;
64
+ this.irflag = 0;
65
+ this.imxer = 0;
66
+ this.illin = 0;
67
+ this.nhnil = 0;
68
+ this.nslast = 0;
69
+ this.jcur = 0;
70
+ this.meth = 0;
71
+ this.mused = 0;
72
+ this.nq = 0;
73
+ this.nst = 0;
74
+ this.ncf = 0;
75
+ this.nfe = 0;
76
+ this.nje = 0;
77
+ this.nqu = 0;
78
+ this.miter = 0;
79
+ }
80
+ }
81
+ // Solver context
82
+ export class LsodaContext {
83
+ constructor(func, neq, data) {
84
+ this.error = null;
85
+ this.common = null;
86
+ this.opt = null;
87
+ this.snapshots = null;
88
+ this.func = func;
89
+ this.neq = neq;
90
+ this.data = data !== null && data !== void 0 ? data : null;
91
+ this.state = 1;
92
+ }
93
+ }
94
+ //# sourceMappingURL=common.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,135 @@
1
+ // Constants from common.h
2
+ export const ETA = 2.2204460492503131e-16;
3
+ export const SQRTETA = 1.4901161193847656e-08;
4
+ export const CCMAX = 0.3;
5
+ export const MAXCOR = 3;
6
+ export const MSBP = 20;
7
+ export const MXNCF = 10;
8
+ export const RATIO = 5.0;
9
+
10
+ // Stability region limits for Adams method (from common.c)
11
+ export const sm1: number[] = [
12
+ 0., 0.5, 0.575, 0.55, 0.45, 0.35, 0.25, 0.2, 0.15, 0.1, 0.075, 0.05, 0.025,
13
+ ];
14
+
15
+ // Method switch coefficients (from methodswitch.c)
16
+ // cm1 and cm2 are calculated from tesco/elco 1 and 2 formula in cfode.c
17
+ export const cm1: number[] = [
18
+ 0, 2.0, 5.999999999999998, 4.0,
19
+ 1.5780346820809881, 0.44444444444444464, 0.09712509625876042, 0.017636684303350972,
20
+ 0.002666977809498494, 0.00033760591160674403, 0.000035714285714285924, 3.1001984126984256e-06,
21
+ 2.1543369643350994e-07,
22
+ ];
23
+
24
+ export const cm2: number[] = [
25
+ 0, 2.0, 1.5, 0.6666666666666667,
26
+ 0.20833333333333348, 0.04999999999999998, 0.09712509625876042, 0.017636684303350972,
27
+ 0.002666977809498494, 0.00033760591160674403, 0.000035714285714285924, 3.1001984126984256e-06,
28
+ 2.1543369643350994e-07,
29
+ ];
30
+
31
+ // User-provided ODE function type
32
+ // t: current time, y: state vector (0-based), ydot: output derivatives (0-based), data: user data
33
+ export type LsodaFunc = (t: number, y: Float64Array, ydot: Float64Array, data: any) => number;
34
+
35
+ // Solver options
36
+ export interface LsodaOpt {
37
+ ixpr: number; // print flag
38
+ mxstep: number; // max internal steps per call
39
+ mxhnil: number; // max step size warnings
40
+ mxordn: number; // max Adams order (1-12)
41
+ mxords: number; // max BDF order (1-5)
42
+ tcrit: number; // critical time for itask 4,5
43
+ h0: number; // initial step size (0 = auto)
44
+ hmax: number; // max absolute step size
45
+ hmin: number; // min absolute step size
46
+ hmxi: number; // 1/hmax (computed)
47
+ itask: number; // integration task (1-5)
48
+ rtol: Float64Array; // relative tolerance (1-indexed)
49
+ atol: Float64Array; // absolute tolerance (1-indexed)
50
+ }
51
+
52
+ // Internal solver state (mirrors lsoda_common_t)
53
+ export class LsodaCommon {
54
+ // Solution history (2D: yh[j][i], 1-indexed)
55
+ yh: Float64Array[] = [];
56
+ // Working matrix for Jacobian/LU (2D: wm[i][j], 1-indexed)
57
+ wm: Float64Array[] = [];
58
+ // Error weights (1-indexed)
59
+ ewt: Float64Array = new Float64Array(0);
60
+ // Saved function values (1-indexed)
61
+ savf: Float64Array = new Float64Array(0);
62
+ // Accumulated corrections (1-indexed)
63
+ acor: Float64Array = new Float64Array(0);
64
+ // Pivot indices for LU (1-indexed)
65
+ ipvt: Int32Array = new Int32Array(0);
66
+
67
+ // Step size
68
+ h: number = 0;
69
+ hu: number = 0;
70
+ rc: number = 0;
71
+ tn: number = 0;
72
+ tsw: number = 0;
73
+ pdnorm: number = 0;
74
+
75
+ // Convergence
76
+ crate: number = 0;
77
+ el: Float64Array = new Float64Array(14);
78
+ hold: number = 0;
79
+ rmax: number = 0;
80
+ pdest: number = 0;
81
+ pdlast: number = 0;
82
+
83
+ // Method coefficients (2D arrays, 1-indexed)
84
+ elco: Float64Array[] = [];
85
+ tesco: Float64Array[] = [];
86
+
87
+ // Counters and flags
88
+ ialth: number = 0;
89
+ ipup: number = 0;
90
+ nslp: number = 0;
91
+ icount: number = 0;
92
+ irflag: number = 0;
93
+ imxer: number = 0;
94
+ illin: number = 0;
95
+ nhnil: number = 0;
96
+ nslast: number = 0;
97
+ jcur: number = 0;
98
+ meth: number = 0;
99
+ mused: number = 0;
100
+ nq: number = 0;
101
+ nst: number = 0;
102
+ ncf: number = 0;
103
+ nfe: number = 0;
104
+ nje: number = 0;
105
+ nqu: number = 0;
106
+ miter: number = 0;
107
+ }
108
+
109
+ // Snapshot of the Nordsieck array at a successful step (0-based arrays)
110
+ export interface NordsieckSnapshot {
111
+ tn: number; // right edge of the step
112
+ h: number; // step size used
113
+ hu: number; // last successful step size (for range check)
114
+ nq: number; // method order
115
+ yh: Float64Array[]; // yh[0..nq], each of length neq (0-based copies)
116
+ }
117
+
118
+ // Solver context
119
+ export class LsodaContext {
120
+ func: LsodaFunc;
121
+ data: any;
122
+ neq: number;
123
+ state: number;
124
+ error: string | null = null;
125
+ common: LsodaCommon | null = null;
126
+ opt: LsodaOpt | null = null;
127
+ snapshots: NordsieckSnapshot[] | null = null;
128
+
129
+ constructor(func: LsodaFunc, neq: number, data?: any) {
130
+ this.func = func;
131
+ this.neq = neq;
132
+ this.data = data ?? null;
133
+ this.state = 1;
134
+ }
135
+ }
@@ -0,0 +1,25 @@
1
+ import { MXNCF } from './common';
2
+ /**
3
+ * Handle corrector convergence failure.
4
+ * Retracts yh array and increments ncf.
5
+ * Returns 2 if unrecoverable, 1 if step can be retried.
6
+ */
7
+ export function corfailure(ctx, told) {
8
+ const c = ctx.common;
9
+ const neq = ctx.neq;
10
+ const hmin = ctx.opt.hmin;
11
+ c.ncf++;
12
+ c.rmax = 2.;
13
+ c.tn = told;
14
+ for (let j = c.nq; j >= 1; j--) {
15
+ for (let i1 = j; i1 <= c.nq; i1++) {
16
+ for (let i = 1; i <= neq; i++)
17
+ c.yh[i1][i] -= c.yh[i1 + 1][i];
18
+ }
19
+ }
20
+ if (Math.abs(c.h) <= hmin * 1.00001 || c.ncf === MXNCF)
21
+ return 2;
22
+ c.ipup = c.miter;
23
+ return 1;
24
+ }
25
+ //# sourceMappingURL=corfailure.js.map
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