diff-grok 1.0.10 → 1.1.0

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Files changed (212) hide show
  1. package/.claude/settings.local.json +11 -0
  2. package/CLAUDE.md +98 -0
  3. package/README.MD +100 -24
  4. package/images/E5.png +0 -0
  5. package/images/HIRES.png +0 -0
  6. package/images/OREGO.png +0 -0
  7. package/images/POLL-full.png +0 -0
  8. package/images/ROBER.png +0 -0
  9. package/images/VDP0L.png +0 -0
  10. package/index.js +1 -1
  11. package/index.js.map +1 -1
  12. package/index.ts +2 -1
  13. package/jest.config.js +1 -0
  14. package/package.json +1 -1
  15. package/src/examples/bioreactor.js +125 -0
  16. package/src/examples/bioreactor.js.map +1 -0
  17. package/src/examples/bioreactor.ts +132 -0
  18. package/src/examples/cyclic-model.js +3 -1
  19. package/src/examples/cyclic-model.js.map +1 -1
  20. package/src/examples/cyclic-model.ts +3 -1
  21. package/src/solver-tools/ab4-method.js +332 -0
  22. package/src/solver-tools/ab4-method.js.map +1 -0
  23. package/src/solver-tools/ab4-method.ts +395 -0
  24. package/src/solver-tools/ab5-method.js +334 -0
  25. package/src/solver-tools/ab5-method.js.map +1 -0
  26. package/src/solver-tools/ab5-method.ts +397 -0
  27. package/src/solver-tools/index.js +6 -0
  28. package/src/solver-tools/index.js.map +1 -1
  29. package/src/solver-tools/index.ts +6 -0
  30. package/src/solver-tools/lsoda/blas.js +246 -0
  31. package/src/solver-tools/lsoda/blas.js.map +1 -0
  32. package/src/solver-tools/lsoda/blas.ts +267 -0
  33. package/src/solver-tools/lsoda/cfode.js +73 -0
  34. package/src/solver-tools/lsoda/cfode.js.map +1 -0
  35. package/src/solver-tools/lsoda/cfode.ts +83 -0
  36. package/src/solver-tools/lsoda/common.js +94 -0
  37. package/src/solver-tools/lsoda/common.js.map +1 -0
  38. package/src/solver-tools/lsoda/common.ts +135 -0
  39. package/src/solver-tools/lsoda/corfailure.js +25 -0
  40. package/src/solver-tools/lsoda/corfailure.js.map +1 -0
  41. package/src/solver-tools/lsoda/corfailure.ts +30 -0
  42. package/src/solver-tools/lsoda/correction.js +101 -0
  43. package/src/solver-tools/lsoda/correction.js.map +1 -0
  44. package/src/solver-tools/lsoda/correction.ts +119 -0
  45. package/src/solver-tools/lsoda/dense.js +110 -0
  46. package/src/solver-tools/lsoda/dense.js.map +1 -0
  47. package/src/solver-tools/lsoda/dense.ts +129 -0
  48. package/src/solver-tools/lsoda/index.js +4 -0
  49. package/src/solver-tools/lsoda/index.js.map +1 -0
  50. package/src/solver-tools/lsoda/index.ts +5 -0
  51. package/src/solver-tools/lsoda/intdy.js +43 -0
  52. package/src/solver-tools/lsoda/intdy.js.map +1 -0
  53. package/src/solver-tools/lsoda/intdy.ts +50 -0
  54. package/src/solver-tools/lsoda/lsoda.js +567 -0
  55. package/src/solver-tools/lsoda/lsoda.js.map +1 -0
  56. package/src/solver-tools/lsoda/lsoda.ts +632 -0
  57. package/src/solver-tools/lsoda/methodswitch.js +97 -0
  58. package/src/solver-tools/lsoda/methodswitch.js.map +1 -0
  59. package/src/solver-tools/lsoda/methodswitch.ts +107 -0
  60. package/src/solver-tools/lsoda/orderswitch.js +86 -0
  61. package/src/solver-tools/lsoda/orderswitch.js.map +1 -0
  62. package/src/solver-tools/lsoda/orderswitch.ts +95 -0
  63. package/src/solver-tools/lsoda/prja.js +43 -0
  64. package/src/solver-tools/lsoda/prja.js.map +1 -0
  65. package/src/solver-tools/lsoda/prja.ts +49 -0
  66. package/src/solver-tools/lsoda/scaleh.js +30 -0
  67. package/src/solver-tools/lsoda/scaleh.js.map +1 -0
  68. package/src/solver-tools/lsoda/scaleh.ts +33 -0
  69. package/src/solver-tools/lsoda/solsy.js +14 -0
  70. package/src/solver-tools/lsoda/solsy.js.map +1 -0
  71. package/src/solver-tools/lsoda/solsy.ts +18 -0
  72. package/src/solver-tools/lsoda/stoda.js +259 -0
  73. package/src/solver-tools/lsoda/stoda.js.map +1 -0
  74. package/src/solver-tools/lsoda/stoda.ts +286 -0
  75. package/src/solver-tools/lsoda-method.js +120 -0
  76. package/src/solver-tools/lsoda-method.js.map +1 -0
  77. package/src/solver-tools/lsoda-method.ts +136 -0
  78. package/src/solver-tools/mrt-method.js +81 -18
  79. package/src/solver-tools/mrt-method.js.map +1 -1
  80. package/src/solver-tools/mrt-method.ts +111 -21
  81. package/src/solver-tools/rk3-method.js +210 -0
  82. package/src/solver-tools/rk3-method.js.map +1 -0
  83. package/src/solver-tools/rk3-method.ts +257 -0
  84. package/src/solver-tools/rk4-method.js +236 -0
  85. package/src/solver-tools/rk4-method.js.map +1 -0
  86. package/src/solver-tools/rk4-method.ts +286 -0
  87. package/src/solver-tools/rkdp-method.js +247 -0
  88. package/src/solver-tools/rkdp-method.js.map +1 -0
  89. package/src/solver-tools/rkdp-method.ts +300 -0
  90. package/src/solver-tools/ros34prw-method.js +1 -1
  91. package/src/solver-tools/ros34prw-method.js.map +1 -1
  92. package/src/solver-tools/ros34prw-method.ts +1 -1
  93. package/src/solver-tools/ros3prw-method.js +1 -1
  94. package/src/solver-tools/ros3prw-method.js.map +1 -1
  95. package/src/solver-tools/ros3prw-method.ts +1 -1
  96. package/src/solver-tools/solver-defs.js +6 -0
  97. package/src/solver-tools/solver-defs.js.map +1 -1
  98. package/src/solver-tools/solver-defs.ts +6 -0
  99. package/src/tests/correctness.test.js +6 -4
  100. package/src/tests/correctness.test.js.map +1 -1
  101. package/src/tests/correctness.test.ts +6 -4
  102. package/src/tests/lsoda-lib-correctness.test.js +223 -0
  103. package/src/tests/lsoda-lib-correctness.test.js.map +1 -0
  104. package/src/tests/lsoda-lib-correctness.test.ts +283 -0
  105. package/src/tests/lsoda-lib-performance.test.js +95 -0
  106. package/src/tests/lsoda-lib-performance.test.js.map +1 -0
  107. package/src/tests/lsoda-lib-performance.test.ts +126 -0
  108. package/src/tests/performance.test.js +10 -8
  109. package/src/tests/performance.test.js.map +1 -1
  110. package/src/tests/performance.test.ts +10 -8
  111. package/src/tests/test-defs.js +14 -1
  112. package/src/tests/test-defs.js.map +1 -1
  113. package/src/tests/test-defs.ts +15 -1
  114. package/src/worker-tools/solving.js +13 -1
  115. package/src/worker-tools/solving.js.map +1 -1
  116. package/src/worker-tools/solving.ts +20 -1
  117. package/docs/.nojekyll +0 -1
  118. package/docs/assets/hierarchy.js +0 -1
  119. package/docs/assets/highlight.css +0 -99
  120. package/docs/assets/icons.js +0 -18
  121. package/docs/assets/icons.svg +0 -1
  122. package/docs/assets/main.js +0 -60
  123. package/docs/assets/navigation.js +0 -1
  124. package/docs/assets/search.js +0 -1
  125. package/docs/assets/style.css +0 -1633
  126. package/docs/classes/BasicModelPipelineCreator.html +0 -10
  127. package/docs/classes/Callback.html +0 -7
  128. package/docs/classes/CyclicModelPipelineCreator.html +0 -10
  129. package/docs/classes/IterCheckerCallback.html +0 -8
  130. package/docs/classes/PipelineCreator.html +0 -6
  131. package/docs/classes/TimeCheckerCallback.html +0 -8
  132. package/docs/classes/UpdatesModelPipelineCreator.html +0 -10
  133. package/docs/functions/applyPipeline.html +0 -9
  134. package/docs/functions/getCallback.html +0 -3
  135. package/docs/functions/getIVP.html +0 -6
  136. package/docs/functions/getInputVector.html +0 -2
  137. package/docs/functions/getIvp2WebWorker.html +0 -6
  138. package/docs/functions/getJScode.html +0 -6
  139. package/docs/functions/getOutputNames.html +0 -4
  140. package/docs/functions/getPipelineCreator.html +0 -7
  141. package/docs/functions/mrt.html +0 -11
  142. package/docs/functions/printE5.html +0 -76
  143. package/docs/functions/printHires.html +0 -76
  144. package/docs/functions/printOrego.html +0 -66
  145. package/docs/functions/printPollution.html +0 -163
  146. package/docs/functions/printRobertson.html +0 -60
  147. package/docs/functions/printVdpol.html +0 -66
  148. package/docs/functions/ros34prw.html +0 -8
  149. package/docs/functions/ros3prw.html +0 -8
  150. package/docs/functions/solveIvp.html +0 -5
  151. package/docs/hierarchy.html +0 -1
  152. package/docs/index.html +0 -683
  153. package/docs/media/CONTRIBUTING.md +0 -74
  154. package/docs/media/POLL.png +0 -0
  155. package/docs/media/VDPOL.png +0 -0
  156. package/docs/media/acid-prod.gif +0 -0
  157. package/docs/media/basic-use.js +0 -40
  158. package/docs/media/basic-use.js.map +0 -1
  159. package/docs/media/basic-use.ts +0 -44
  160. package/docs/media/check-methods.js +0 -59
  161. package/docs/media/check-methods.js.map +0 -1
  162. package/docs/media/check-methods.ts +0 -81
  163. package/docs/media/corr-probs.js +0 -132
  164. package/docs/media/corr-probs.js.map +0 -1
  165. package/docs/media/corr-probs.ts +0 -155
  166. package/docs/media/cyclic-model.js +0 -100
  167. package/docs/media/cyclic-model.js.map +0 -1
  168. package/docs/media/cyclic-model.ts +0 -110
  169. package/docs/media/e5.js +0 -36
  170. package/docs/media/e5.js.map +0 -1
  171. package/docs/media/e5.ts +0 -36
  172. package/docs/media/hires.js +0 -39
  173. package/docs/media/hires.js.map +0 -1
  174. package/docs/media/hires.ts +0 -40
  175. package/docs/media/model-updates.js +0 -112
  176. package/docs/media/model-updates.js.map +0 -1
  177. package/docs/media/model-updates.ts +0 -122
  178. package/docs/media/orego.js +0 -24
  179. package/docs/media/orego.js.map +0 -1
  180. package/docs/media/orego.ts +0 -25
  181. package/docs/media/pipeline-use.js +0 -87
  182. package/docs/media/pipeline-use.js.map +0 -1
  183. package/docs/media/pipeline-use.ts +0 -98
  184. package/docs/media/pollution.js +0 -132
  185. package/docs/media/pollution.js.map +0 -1
  186. package/docs/media/pollution.ts +0 -133
  187. package/docs/media/print-benchmark.js +0 -581
  188. package/docs/media/print-benchmark.js.map +0 -1
  189. package/docs/media/print-benchmark.ts +0 -594
  190. package/docs/media/robertson.js +0 -19
  191. package/docs/media/robertson.js.map +0 -1
  192. package/docs/media/robertson.ts +0 -19
  193. package/docs/media/scripting.js +0 -30
  194. package/docs/media/scripting.js.map +0 -1
  195. package/docs/media/scripting.ts +0 -35
  196. package/docs/media/vdpol.js +0 -17
  197. package/docs/media/vdpol.js.map +0 -1
  198. package/docs/media/vdpol.ts +0 -17
  199. package/docs/modules.html +0 -1
  200. package/docs/types/Arg.html +0 -12
  201. package/docs/types/DifEqs.html +0 -8
  202. package/docs/types/Func.html +0 -7
  203. package/docs/types/IVP.html +0 -40
  204. package/docs/types/IVP2WebWorker.html +0 -12
  205. package/docs/types/Input.html +0 -8
  206. package/docs/types/Loop.html +0 -7
  207. package/docs/types/ODEs.html +0 -31
  208. package/docs/types/Output.html +0 -6
  209. package/docs/types/Pipeline.html +0 -6
  210. package/docs/types/SolverOptions.html +0 -8
  211. package/docs/types/Update.html +0 -9
  212. package/docs/types/Wrapper.html +0 -8
@@ -0,0 +1,97 @@
1
+ import { ETA, RATIO, sm1, cm1, cm2 } from './common';
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+ import { vmnorm } from './blas';
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+ /**
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+ * Consider switching between Adams (meth=1) and BDF (meth=2).
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+ * Modifies ctx.common.meth, miter, nq, icount, pdlast on switch.
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+ */
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+ export function methodswitch(ctx, dsm, pnorm, out) {
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+ const c = ctx.common;
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+ const neq = ctx.neq;
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+ const mxordn = ctx.opt.mxordn;
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+ const mxords = ctx.opt.mxords;
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+ if (c.meth === 1) {
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+ // Currently Adams, consider switching to BDF
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+ if (c.nq > 5)
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+ return;
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+ let rh2;
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+ let nqm2;
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+ if (dsm <= (100. * pnorm * ETA) || c.pdest === 0.) {
19
+ if (c.irflag === 0)
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+ return;
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+ rh2 = 2.;
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+ nqm2 = Math.min(c.nq, mxords);
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+ }
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+ else {
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+ const exsm = 1. / (c.nq + 1);
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+ let rh1 = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
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+ let rh1it = 2. * rh1;
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+ const pdh = c.pdlast * Math.abs(c.h);
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+ if ((pdh * rh1) > 0.00001)
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+ rh1it = sm1[c.nq] / pdh;
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+ rh1 = Math.min(rh1, rh1it);
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+ if (c.nq > mxords) {
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+ nqm2 = mxords;
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+ const lm2 = mxords + 1;
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+ const exm2 = 1. / lm2;
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+ const lm2p1 = lm2 + 1;
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+ const dm2 = vmnorm(neq, c.yh[lm2p1], c.ewt) / cm2[mxords];
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+ rh2 = 1. / (1.2 * Math.pow(dm2, exm2) + 0.0000012);
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+ }
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+ else {
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+ const dm2 = dsm * (cm1[c.nq] / cm2[c.nq]);
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+ rh2 = 1. / (1.2 * Math.pow(dm2, exsm) + 0.0000012);
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+ nqm2 = c.nq;
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+ }
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+ if (rh2 < RATIO * rh1)
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+ return;
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+ }
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+ // Switch to BDF
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+ out.rh = rh2;
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+ c.icount = 20;
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+ c.meth = 2;
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+ c.miter = 2;
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+ c.pdlast = 0.;
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+ c.nq = nqm2;
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+ return;
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+ }
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+ // Currently BDF (meth=2), consider switching to Adams
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+ const exsm = 1. / (c.nq + 1);
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+ let nqm1;
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+ let exm1;
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+ let rh1;
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+ let dm1;
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+ if (mxordn < c.nq) {
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+ nqm1 = mxordn;
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+ const lm1 = mxordn + 1;
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+ exm1 = 1. / lm1;
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+ const lm1p1 = lm1 + 1;
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+ dm1 = vmnorm(neq, c.yh[lm1p1], c.ewt) / cm1[mxordn];
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+ rh1 = 1. / (1.2 * Math.pow(dm1, exm1) + 0.0000012);
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+ }
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+ else {
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+ dm1 = dsm * (cm2[c.nq] / cm1[c.nq]);
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+ rh1 = 1. / (1.2 * Math.pow(dm1, exsm) + 0.0000012);
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+ nqm1 = c.nq;
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+ exm1 = exsm;
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+ }
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+ let rh1it = 2. * rh1;
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+ const pdh = c.pdnorm * Math.abs(c.h);
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+ if ((pdh * rh1) > 0.00001)
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+ rh1it = sm1[nqm1] / pdh;
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+ rh1 = Math.min(rh1, rh1it);
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+ const rh2 = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
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+ if ((rh1 * RATIO) < (5. * rh2))
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+ return;
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+ const alpha = Math.max(0.001, rh1);
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+ dm1 *= Math.pow(alpha, exm1);
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+ if (dm1 <= 1000. * ETA * pnorm)
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+ return;
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+ // Switch to Adams
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+ out.rh = rh1;
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+ c.icount = 20;
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+ c.meth = 1;
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+ c.miter = 0;
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+ c.pdlast = 0.;
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+ c.nq = nqm1;
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+ }
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+ //# sourceMappingURL=methodswitch.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,107 @@
1
+ import {LsodaContext, ETA, RATIO, sm1, cm1, cm2} from './common';
2
+ import {vmnorm} from './blas';
3
+
4
+ /** Mutable rh output */
5
+ export interface MethodSwitchResult {
6
+ rh: number;
7
+ }
8
+
9
+ /**
10
+ * Consider switching between Adams (meth=1) and BDF (meth=2).
11
+ * Modifies ctx.common.meth, miter, nq, icount, pdlast on switch.
12
+ */
13
+ export function methodswitch(
14
+ ctx: LsodaContext, dsm: number, pnorm: number, out: MethodSwitchResult,
15
+ ): void {
16
+ const c = ctx.common!;
17
+ const neq = ctx.neq;
18
+ const mxordn = ctx.opt!.mxordn;
19
+ const mxords = ctx.opt!.mxords;
20
+
21
+ if (c.meth === 1) {
22
+ // Currently Adams, consider switching to BDF
23
+ if (c.nq > 5) return;
24
+
25
+ let rh2: number;
26
+ let nqm2: number;
27
+
28
+ if (dsm <= (100. * pnorm * ETA) || c.pdest === 0.) {
29
+ if (c.irflag === 0) return;
30
+ rh2 = 2.;
31
+ nqm2 = Math.min(c.nq, mxords);
32
+ } else {
33
+ const exsm = 1. / (c.nq + 1);
34
+ let rh1 = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
35
+ let rh1it = 2. * rh1;
36
+ const pdh = c.pdlast * Math.abs(c.h);
37
+ if ((pdh * rh1) > 0.00001)
38
+ rh1it = sm1[c.nq] / pdh;
39
+ rh1 = Math.min(rh1, rh1it);
40
+
41
+ if (c.nq > mxords) {
42
+ nqm2 = mxords;
43
+ const lm2 = mxords + 1;
44
+ const exm2 = 1. / lm2;
45
+ const lm2p1 = lm2 + 1;
46
+ const dm2 = vmnorm(neq, c.yh[lm2p1], c.ewt) / cm2[mxords];
47
+ rh2 = 1. / (1.2 * Math.pow(dm2, exm2) + 0.0000012);
48
+ } else {
49
+ const dm2 = dsm * (cm1[c.nq] / cm2[c.nq]);
50
+ rh2 = 1. / (1.2 * Math.pow(dm2, exsm) + 0.0000012);
51
+ nqm2 = c.nq;
52
+ }
53
+ if (rh2 < RATIO * rh1) return;
54
+ }
55
+
56
+ // Switch to BDF
57
+ out.rh = rh2;
58
+ c.icount = 20;
59
+ c.meth = 2;
60
+ c.miter = 2;
61
+ c.pdlast = 0.;
62
+ c.nq = nqm2;
63
+ return;
64
+ }
65
+
66
+ // Currently BDF (meth=2), consider switching to Adams
67
+ const exsm = 1. / (c.nq + 1);
68
+ let nqm1: number;
69
+ let exm1: number;
70
+ let rh1: number;
71
+ let dm1: number;
72
+
73
+ if (mxordn < c.nq) {
74
+ nqm1 = mxordn;
75
+ const lm1 = mxordn + 1;
76
+ exm1 = 1. / lm1;
77
+ const lm1p1 = lm1 + 1;
78
+ dm1 = vmnorm(neq, c.yh[lm1p1], c.ewt) / cm1[mxordn];
79
+ rh1 = 1. / (1.2 * Math.pow(dm1, exm1) + 0.0000012);
80
+ } else {
81
+ dm1 = dsm * (cm2[c.nq] / cm1[c.nq]);
82
+ rh1 = 1. / (1.2 * Math.pow(dm1, exsm) + 0.0000012);
83
+ nqm1 = c.nq;
84
+ exm1 = exsm;
85
+ }
86
+
87
+ let rh1it = 2. * rh1;
88
+ const pdh = c.pdnorm * Math.abs(c.h);
89
+ if ((pdh * rh1) > 0.00001)
90
+ rh1it = sm1[nqm1] / pdh;
91
+ rh1 = Math.min(rh1, rh1it);
92
+
93
+ const rh2 = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
94
+ if ((rh1 * RATIO) < (5. * rh2)) return;
95
+
96
+ const alpha = Math.max(0.001, rh1);
97
+ dm1 *= Math.pow(alpha, exm1);
98
+ if (dm1 <= 1000. * ETA * pnorm) return;
99
+
100
+ // Switch to Adams
101
+ out.rh = rh1;
102
+ c.icount = 20;
103
+ c.meth = 1;
104
+ c.miter = 0;
105
+ c.pdlast = 0.;
106
+ c.nq = nqm1;
107
+ }
@@ -0,0 +1,86 @@
1
+ import { sm1 } from './common';
2
+ import { vmnorm } from './blas';
3
+ /**
4
+ * Decide whether to change the order and/or step size.
5
+ * Returns orderflag: 0 = no change, 1 = change h only, 2 = change both h and nq.
6
+ */
7
+ export function orderswitch(ctx, rhup, dsm, out, kflag, maxord) {
8
+ const c = ctx.common;
9
+ const neq = ctx.neq;
10
+ const exsm = 1. / (c.nq + 1);
11
+ let rhsm = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
12
+ let rhdn = 0.;
13
+ if (c.nq !== 1) {
14
+ const ddn = vmnorm(neq, c.yh[c.nq + 1], c.ewt) / c.tesco[c.nq][1];
15
+ const exdn = 1. / c.nq;
16
+ rhdn = 1. / (1.3 * Math.pow(ddn, exdn) + 0.0000013);
17
+ }
18
+ // If meth = 1, limit rh according to stability region
19
+ if (c.meth === 1) {
20
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
21
+ if (c.nq + 1 < maxord + 1)
22
+ rhup = Math.min(rhup, sm1[c.nq + 1] / pdh);
23
+ rhsm = Math.min(rhsm, sm1[c.nq] / pdh);
24
+ if (c.nq > 1)
25
+ rhdn = Math.min(rhdn, sm1[c.nq - 1] / pdh);
26
+ c.pdest = 0.;
27
+ }
28
+ let newq;
29
+ if (rhsm >= rhup) {
30
+ if (rhsm >= rhdn) {
31
+ newq = c.nq;
32
+ out.rh = rhsm;
33
+ }
34
+ else {
35
+ newq = c.nq - 1;
36
+ out.rh = rhdn;
37
+ if (kflag < 0 && out.rh > 1.)
38
+ out.rh = 1.;
39
+ }
40
+ }
41
+ else {
42
+ if (rhup <= rhdn) {
43
+ newq = c.nq - 1;
44
+ out.rh = rhdn;
45
+ if (kflag < 0 && out.rh > 1.)
46
+ out.rh = 1.;
47
+ }
48
+ else {
49
+ out.rh = rhup;
50
+ if (out.rh >= 1.1) {
51
+ const r = c.el[c.nq + 1] / (c.nq + 1);
52
+ c.nq = c.nq + 1;
53
+ for (let i = 1; i <= neq; i++)
54
+ c.yh[c.nq + 1][i] = c.acor[i] * r;
55
+ return 2;
56
+ }
57
+ else {
58
+ c.ialth = 3;
59
+ return 0;
60
+ }
61
+ }
62
+ }
63
+ // If meth = 1 and h is restricted by stability, bypass 10% test
64
+ if (c.meth === 1) {
65
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
66
+ if (out.rh * pdh * 1.00001 < sm1[newq]) {
67
+ if (kflag === 0 && out.rh < 1.1) {
68
+ c.ialth = 3;
69
+ return 0;
70
+ }
71
+ }
72
+ }
73
+ else {
74
+ if (kflag === 0 && out.rh < 1.1) {
75
+ c.ialth = 3;
76
+ return 0;
77
+ }
78
+ }
79
+ if (kflag <= -2)
80
+ out.rh = Math.min(out.rh, 0.2);
81
+ if (newq === c.nq)
82
+ return 1;
83
+ c.nq = newq;
84
+ return 2;
85
+ }
86
+ //# sourceMappingURL=orderswitch.js.map
@@ -0,0 +1 @@
1
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@@ -0,0 +1,95 @@
1
+ import {LsodaContext, sm1} from './common';
2
+ import {vmnorm} from './blas';
3
+
4
+ /** Mutable rh output */
5
+ export interface OrderSwitchResult {
6
+ rh: number;
7
+ }
8
+
9
+ /**
10
+ * Decide whether to change the order and/or step size.
11
+ * Returns orderflag: 0 = no change, 1 = change h only, 2 = change both h and nq.
12
+ */
13
+ export function orderswitch(
14
+ ctx: LsodaContext, rhup: number, dsm: number,
15
+ out: OrderSwitchResult, kflag: number, maxord: number,
16
+ ): number {
17
+ const c = ctx.common!;
18
+ const neq = ctx.neq;
19
+
20
+ const exsm = 1. / (c.nq + 1);
21
+ let rhsm = 1. / (1.2 * Math.pow(dsm, exsm) + 0.0000012);
22
+
23
+ let rhdn = 0.;
24
+ if (c.nq !== 1) {
25
+ const ddn = vmnorm(neq, c.yh[c.nq + 1], c.ewt) / c.tesco[c.nq][1];
26
+ const exdn = 1. / c.nq;
27
+ rhdn = 1. / (1.3 * Math.pow(ddn, exdn) + 0.0000013);
28
+ }
29
+
30
+ // If meth = 1, limit rh according to stability region
31
+ if (c.meth === 1) {
32
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
33
+ if (c.nq + 1 < maxord + 1)
34
+ rhup = Math.min(rhup, sm1[c.nq + 1] / pdh);
35
+ rhsm = Math.min(rhsm, sm1[c.nq] / pdh);
36
+ if (c.nq > 1)
37
+ rhdn = Math.min(rhdn, sm1[c.nq - 1] / pdh);
38
+ c.pdest = 0.;
39
+ }
40
+
41
+ let newq: number;
42
+ if (rhsm >= rhup) {
43
+ if (rhsm >= rhdn) {
44
+ newq = c.nq;
45
+ out.rh = rhsm;
46
+ } else {
47
+ newq = c.nq - 1;
48
+ out.rh = rhdn;
49
+ if (kflag < 0 && out.rh > 1.) out.rh = 1.;
50
+ }
51
+ } else {
52
+ if (rhup <= rhdn) {
53
+ newq = c.nq - 1;
54
+ out.rh = rhdn;
55
+ if (kflag < 0 && out.rh > 1.) out.rh = 1.;
56
+ } else {
57
+ out.rh = rhup;
58
+ if (out.rh >= 1.1) {
59
+ const r = c.el[c.nq + 1] / (c.nq + 1);
60
+ c.nq = c.nq + 1;
61
+ for (let i = 1; i <= neq; i++)
62
+ c.yh[c.nq + 1][i] = c.acor[i] * r;
63
+ return 2;
64
+ } else {
65
+ c.ialth = 3;
66
+ return 0;
67
+ }
68
+ }
69
+ }
70
+
71
+ // If meth = 1 and h is restricted by stability, bypass 10% test
72
+ if (c.meth === 1) {
73
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
74
+ if (out.rh * pdh * 1.00001 < sm1[newq]) {
75
+ if (kflag === 0 && out.rh < 1.1) {
76
+ c.ialth = 3;
77
+ return 0;
78
+ }
79
+ }
80
+ } else {
81
+ if (kflag === 0 && out.rh < 1.1) {
82
+ c.ialth = 3;
83
+ return 0;
84
+ }
85
+ }
86
+
87
+ if (kflag <= -2)
88
+ out.rh = Math.min(out.rh, 0.2);
89
+
90
+ if (newq === c.nq)
91
+ return 1;
92
+
93
+ c.nq = newq;
94
+ return 2;
95
+ }
@@ -0,0 +1,43 @@
1
+ import { ETA, SQRTETA } from './common';
2
+ import { vmnorm, fnorm, dgefa } from './blas';
3
+ /**
4
+ * Compute and process the matrix P = I - h * el[1] * J,
5
+ * where J is approximated by finite differences.
6
+ * Returns 1 on success, 0 on failure (singular matrix).
7
+ */
8
+ export function prja(ctx, y) {
9
+ const c = ctx.common;
10
+ const neq = ctx.neq;
11
+ c.nje++;
12
+ const hl0 = c.h * c.el[1];
13
+ if (c.miter !== 2) {
14
+ console.error('[prja] miter != 2');
15
+ return 0;
16
+ }
17
+ let fac = vmnorm(neq, c.savf, c.ewt);
18
+ let r0 = 1000. * Math.abs(c.h) * ETA * neq * fac;
19
+ if (r0 === 0.)
20
+ r0 = 1.;
21
+ for (let j = 1; j <= neq; j++) {
22
+ const yj = y[j];
23
+ const r = Math.max(SQRTETA * Math.abs(yj), r0 / c.ewt[j]);
24
+ y[j] += r;
25
+ fac = -hl0 / r;
26
+ ctx.func(c.tn, y.subarray(1), c.acor.subarray(1), ctx.data);
27
+ for (let i = 1; i <= neq; i++)
28
+ c.wm[i][j] = (c.acor[i] - c.savf[i]) * fac;
29
+ y[j] = yj;
30
+ }
31
+ c.nfe += neq;
32
+ // Compute norm of Jacobian
33
+ c.pdnorm = fnorm(neq, c.wm, c.ewt) / Math.abs(hl0);
34
+ // Add identity matrix
35
+ for (let i = 1; i <= neq; i++)
36
+ c.wm[i][i] += 1.;
37
+ // LU decomposition on P
38
+ const ier = dgefa(c.wm, neq, c.ipvt);
39
+ if (ier !== 0)
40
+ return 0;
41
+ return 1;
42
+ }
43
+ //# sourceMappingURL=prja.js.map
@@ -0,0 +1 @@
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+ {"version":3,"file":"prja.js","sourceRoot":"","sources":["prja.ts"],"names":[],"mappings":"AAAA,OAAO,EAAe,GAAG,EAAE,OAAO,EAAC,MAAM,UAAU,CAAC;AACpD,OAAO,EAAC,MAAM,EAAE,KAAK,EAAE,KAAK,EAAC,MAAM,QAAQ,CAAC;AAE5C;;;;GAIG;AACH,MAAM,UAAU,IAAI,CAAC,GAAiB,EAAE,CAAe;IACrD,MAAM,CAAC,GAAG,GAAG,CAAC,MAAO,CAAC;IACtB,MAAM,GAAG,GAAG,GAAG,CAAC,GAAG,CAAC;IAEpB,CAAC,CAAC,GAAG,EAAE,CAAC;IACR,MAAM,GAAG,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAE1B,IAAI,CAAC,CAAC,KAAK,KAAK,CAAC,EAAE,CAAC;QAClB,OAAO,CAAC,KAAK,CAAC,mBAAmB,CAAC,CAAC;QACnC,OAAO,CAAC,CAAC;IACX,CAAC;IAED,IAAI,GAAG,GAAG,MAAM,CAAC,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC;IACrC,IAAI,EAAE,GAAG,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,GAAG,GAAG,GAAG,GAAG,CAAC;IACjD,IAAI,EAAE,KAAK,EAAE;QAAE,EAAE,GAAG,EAAE,CAAC;IAEvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC;QAC9B,MAAM,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAChB,MAAM,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QAC1D,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;QACV,GAAG,GAAG,CAAC,GAAG,GAAG,CAAC,CAAC;QACf,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;QAC5D,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE;YAC3B,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC;QAC7C,CAAC,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;IACZ,CAAC;IACD,CAAC,CAAC,GAAG,IAAI,GAAG,CAAC;IAEb,2BAA2B;IAC3B,CAAC,CAAC,MAAM,GAAG,KAAK,CAAC,GAAG,EAAE,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,GAAG,CAAC,GAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;IAEnD,sBAAsB;IACtB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE;QAC3B,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IAEnB,wBAAwB;IACxB,MAAM,GAAG,GAAG,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;IACrC,IAAI,GAAG,KAAK,CAAC;QAAE,OAAO,CAAC,CAAC;IAExB,OAAO,CAAC,CAAC;AACX,CAAC"}
@@ -0,0 +1,49 @@
1
+ import {LsodaContext, ETA, SQRTETA} from './common';
2
+ import {vmnorm, fnorm, dgefa} from './blas';
3
+
4
+ /**
5
+ * Compute and process the matrix P = I - h * el[1] * J,
6
+ * where J is approximated by finite differences.
7
+ * Returns 1 on success, 0 on failure (singular matrix).
8
+ */
9
+ export function prja(ctx: LsodaContext, y: Float64Array): number {
10
+ const c = ctx.common!;
11
+ const neq = ctx.neq;
12
+
13
+ c.nje++;
14
+ const hl0 = c.h * c.el[1];
15
+
16
+ if (c.miter !== 2) {
17
+ console.error('[prja] miter != 2');
18
+ return 0;
19
+ }
20
+
21
+ let fac = vmnorm(neq, c.savf, c.ewt);
22
+ let r0 = 1000. * Math.abs(c.h) * ETA * neq * fac;
23
+ if (r0 === 0.) r0 = 1.;
24
+
25
+ for (let j = 1; j <= neq; j++) {
26
+ const yj = y[j];
27
+ const r = Math.max(SQRTETA * Math.abs(yj), r0 / c.ewt[j]);
28
+ y[j] += r;
29
+ fac = -hl0 / r;
30
+ ctx.func(c.tn, y.subarray(1), c.acor.subarray(1), ctx.data);
31
+ for (let i = 1; i <= neq; i++)
32
+ c.wm[i][j] = (c.acor[i] - c.savf[i]) * fac;
33
+ y[j] = yj;
34
+ }
35
+ c.nfe += neq;
36
+
37
+ // Compute norm of Jacobian
38
+ c.pdnorm = fnorm(neq, c.wm, c.ewt) / Math.abs(hl0);
39
+
40
+ // Add identity matrix
41
+ for (let i = 1; i <= neq; i++)
42
+ c.wm[i][i] += 1.;
43
+
44
+ // LU decomposition on P
45
+ const ier = dgefa(c.wm, neq, c.ipvt);
46
+ if (ier !== 0) return 0;
47
+
48
+ return 1;
49
+ }
@@ -0,0 +1,30 @@
1
+ import { sm1 } from './common';
2
+ /**
3
+ * Scale step size. Rescales the yh array when h changes.
4
+ */
5
+ export function scaleh(ctx, rh) {
6
+ const c = ctx.common;
7
+ const neq = ctx.neq;
8
+ const hmxi = ctx.opt.hmxi;
9
+ rh = Math.min(rh, c.rmax);
10
+ rh = rh / Math.max(1., Math.abs(c.h) * hmxi * rh);
11
+ // If meth = 1, restrict by stability region
12
+ if (c.meth === 1) {
13
+ c.irflag = 0;
14
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
15
+ if ((rh * pdh * 1.00001) >= sm1[c.nq]) {
16
+ rh = sm1[c.nq] / pdh;
17
+ c.irflag = 1;
18
+ }
19
+ }
20
+ let r = 1.;
21
+ for (let j = 2; j <= c.nq + 1; j++) {
22
+ r *= rh;
23
+ for (let i = 1; i <= neq; i++)
24
+ c.yh[j][i] *= r;
25
+ }
26
+ c.h *= rh;
27
+ c.rc *= rh;
28
+ c.ialth = c.nq + 1;
29
+ }
30
+ //# sourceMappingURL=scaleh.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"scaleh.js","sourceRoot":"","sources":["scaleh.ts"],"names":[],"mappings":"AAAA,OAAO,EAAe,GAAG,EAAC,MAAM,UAAU,CAAC;AAE3C;;GAEG;AACH,MAAM,UAAU,MAAM,CAAC,GAAiB,EAAE,EAAU;IAClD,MAAM,CAAC,GAAG,GAAG,CAAC,MAAO,CAAC;IACtB,MAAM,GAAG,GAAG,GAAG,CAAC,GAAG,CAAC;IACpB,MAAM,IAAI,GAAG,GAAG,CAAC,GAAI,CAAC,IAAI,CAAC;IAE3B,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,CAAC,IAAI,CAAC,CAAC;IAC1B,EAAE,GAAG,EAAE,GAAG,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,GAAG,EAAE,CAAC,CAAC;IAElD,4CAA4C;IAC5C,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC,EAAE,CAAC;QACjB,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;QACb,MAAM,GAAG,GAAG,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,MAAM,EAAE,QAAQ,CAAC,CAAC;QACzD,IAAI,CAAC,EAAE,GAAG,GAAG,GAAG,OAAO,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC;YACtC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC;YACrB,CAAC,CAAC,MAAM,GAAG,CAAC,CAAC;QACf,CAAC;IACH,CAAC;IAED,IAAI,CAAC,GAAG,EAAE,CAAC;IACX,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,CAAC,CAAC,EAAE,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE,CAAC;QACnC,CAAC,IAAI,EAAE,CAAC;QACR,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,GAAG,EAAE,CAAC,EAAE;YAC3B,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACpB,CAAC;IACD,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;IACV,CAAC,CAAC,EAAE,IAAI,EAAE,CAAC;IACX,CAAC,CAAC,KAAK,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC;AACrB,CAAC"}
@@ -0,0 +1,33 @@
1
+ import {LsodaContext, sm1} from './common';
2
+
3
+ /**
4
+ * Scale step size. Rescales the yh array when h changes.
5
+ */
6
+ export function scaleh(ctx: LsodaContext, rh: number): void {
7
+ const c = ctx.common!;
8
+ const neq = ctx.neq;
9
+ const hmxi = ctx.opt!.hmxi;
10
+
11
+ rh = Math.min(rh, c.rmax);
12
+ rh = rh / Math.max(1., Math.abs(c.h) * hmxi * rh);
13
+
14
+ // If meth = 1, restrict by stability region
15
+ if (c.meth === 1) {
16
+ c.irflag = 0;
17
+ const pdh = Math.max(Math.abs(c.h) * c.pdlast, 0.000001);
18
+ if ((rh * pdh * 1.00001) >= sm1[c.nq]) {
19
+ rh = sm1[c.nq] / pdh;
20
+ c.irflag = 1;
21
+ }
22
+ }
23
+
24
+ let r = 1.;
25
+ for (let j = 2; j <= c.nq + 1; j++) {
26
+ r *= rh;
27
+ for (let i = 1; i <= neq; i++)
28
+ c.yh[j][i] *= r;
29
+ }
30
+ c.h *= rh;
31
+ c.rc *= rh;
32
+ c.ialth = c.nq + 1;
33
+ }
@@ -0,0 +1,14 @@
1
+ import { dgesl } from './blas';
2
+ /**
3
+ * Solve the linear system arising from a chord iteration.
4
+ * Only miter=2 (dense) is supported.
5
+ */
6
+ export function solsy(ctx, y) {
7
+ const c = ctx.common;
8
+ const neq = ctx.neq;
9
+ if (c.miter !== 2)
10
+ throw new Error('[solsy] miter != 2 not implemented');
11
+ dgesl(c.wm, neq, c.ipvt, y, 0);
12
+ return 1;
13
+ }
14
+ //# sourceMappingURL=solsy.js.map
@@ -0,0 +1 @@
1
+ {"version":3,"file":"solsy.js","sourceRoot":"","sources":["solsy.ts"],"names":[],"mappings":"AACA,OAAO,EAAC,KAAK,EAAC,MAAM,QAAQ,CAAC;AAE7B;;;GAGG;AACH,MAAM,UAAU,KAAK,CAAC,GAAiB,EAAE,CAAe;IACtD,MAAM,CAAC,GAAG,GAAG,CAAC,MAAO,CAAC;IACtB,MAAM,GAAG,GAAG,GAAG,CAAC,GAAG,CAAC;IAEpB,IAAI,CAAC,CAAC,KAAK,KAAK,CAAC;QACf,MAAM,IAAI,KAAK,CAAC,oCAAoC,CAAC,CAAC;IAGxD,KAAK,CAAC,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;IAC/B,OAAO,CAAC,CAAC;AACX,CAAC"}
@@ -0,0 +1,18 @@
1
+ import {LsodaContext} from './common';
2
+ import {dgesl} from './blas';
3
+
4
+ /**
5
+ * Solve the linear system arising from a chord iteration.
6
+ * Only miter=2 (dense) is supported.
7
+ */
8
+ export function solsy(ctx: LsodaContext, y: Float64Array): number {
9
+ const c = ctx.common!;
10
+ const neq = ctx.neq;
11
+
12
+ if (c.miter !== 2)
13
+ throw new Error('[solsy] miter != 2 not implemented');
14
+
15
+
16
+ dgesl(c.wm, neq, c.ipvt, y, 0);
17
+ return 1;
18
+ }