copper3d 3.4.7 → 3.4.9

package/dist/index.d.ts

@@ -17,7 +17,7 @@ import { GaussianSmoother } from "./Utils/segmentation/core/GaussianSmoother";
 import { Copper3dTrackballControls } from "./Controls/Copper3dTrackballControls";
 import { MeshNodeTool } from "./Utils/MeshNodeTool";
 import { removeGuiFolderChilden } from "./Utils/segmentation/coreTools/gui";
-import { nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, exportPaintImageType, IOptVTKLoader } from "./types/types";
+import { nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, exportPaintImageType, IOptVTKLoader, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController } from "./types/types";
 import { IPaintImage, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, IGuiMeta } from "./Utils/segmentation/core/types";
 import { NrrdState } from "./Utils/segmentation/coreTools/NrrdState";
 import { GuiState } from "./Utils/segmentation/coreTools/GuiState";
@@ -25,6 +25,6 @@ import type { ToolMode, IAnnotationCallbacks } from "./Utils/segmentation/core/t
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import type { LayerId, ChannelValue } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export declare const REVISION = "v3.4.7-beta";
+export declare const REVISION = "v3.4.9-beta";
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
-export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };
+export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };

package/dist/index.js

@@ -21,7 +21,7 @@ import { MeshNodeTool } from "./Utils/MeshNodeTool";
 import { removeGuiFolderChilden } from "./Utils/segmentation/coreTools/gui";
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export const REVISION = "v3.4.7-beta";
+export const REVISION = "v3.4.9-beta";
 console.log(`%cCopper3D Visualisation %cBeta:${REVISION}`, "padding: 3px;color:white; background:#023047", "padding: 3px;color:white; background:#f50a25");
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,uDAAuD;AAEvD,OAAO,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AAC3D,OAAO,EAAE,cAAc,EAAE,MAAM,yBAAyB,CAAC;AACzD,OAAO,EAAE,WAAW,EAAE,MAAM,qBAAqB,CAAC;AAClD,OAAO,EAAE,eAAe,EAAE,MAAM,2BAA2B,CAAC;AAC5D,OAAO,EACL,eAAe,EAGf,uBAAuB,EACvB,uBAAuB,GACxB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAAE,YAAY,EAAY,MAAM,2BAA2B,CAAC;AACnE,OAAO,EAAE,mBAAmB,EAAE,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACvE,OAAO,EAAE,sBAAsB,EAAE,MAAM,mCAAmC,CAAC;AAC3E,OAAO,EAAE,mBAAmB,EAAE,MAAM,6BAA6B,CAAC;AAClE,OAAO,EAAE,oBAAoB,EAAE,MAAM,iCAAiC,CAAC;AACvE,OAAO,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AAEpD,OAAO,EAAE,oBAAoB,EAAE,MAAM,mBAAmB,CAAC;AAEzD,OAAO,EAAE,mBAAmB,EAAE,MAAM,iCAAiC,CAAC;AACtE,OAAO,QAAQ,MAAM,iCAAiC,CAAC;AACvD,OAAO,EAAE,SAAS,EAAE,MAAM,gCAAgC,CAAC;AAC3D,OAAO,EAAE,gBAAgB,EAAE,MAAM,4CAA4C,CAAC;AAC9E,iDAAiD;AAEjD,OAAO,EAAE,yBAAyB,EAAE,MAAM,sCAAsC,CAAC;AAEjF,OAAO,EAAE,YAAY,EAAE,MAAM,sBAAsB,CAAC;AACpD,OAAO,EAAE,sBAAsB,EAAE,MAAM,oCAAoC,CAAC;AAoB5E,OAAO,EAAE,cAAc,EAAE,kBAAkB,EAAE,SAAS,EAAE,SAAS,EAAE,MAAM,iCAAiC,CAAC;AAG3G,OAAO,iBAAiB,CAAC;AAEzB,MAAM,CAAC,MAAM,QAAQ,GAAG,aAAa,CAAC;AAEtC,OAAO,CAAC,GAAG,CACT,mCAAmC,QAAQ,EAAE,EAC7C,8CAA8C,EAC9C,8CAA8C,CAC/C,CAAC;AAEF,OAAO,EACL,cAAc,EACd,sBAAsB,EACtB,oBAAoB,EACpB,cAAc,EACd,eAAe,EACf,uBAAuB,EACvB,uBAAuB,EACvB,YAAY,EACZ,mBAAmB,EACnB,mBAAmB,EACnB,WAAW,EACX,mBAAmB,EACnB,YAAY,EACZ,eAAe,EACf,QAAQ,EACR,SAAS,EACT,OAAO,EACP,yBAAyB,EACzB,oBAAoB,EACpB,YAAY,EACZ,QAAQ,EACR,sBAAsB,EACtB,cAAc,EACd,kBAAkB,EAClB,SAAS,EACT,SAAS,EACT,gBAAgB,GACjB,CAAC"}

package/dist/types/Loader/copperDicomLoader.d.ts

@@ -1,5 +1,11 @@
-import { copperVolumeType } from "../types/types";
+import { copperVolumeType, planeCorners } from "../types/types";
 export declare function copperDicomLoader(url: string, callback?: (copperVolume: copperVolumeType) => void): void;
+/**
+ * Compute the 4 world-space corners of a DICOM image plane from its geometry tags.
+ * IPP is the CENTER of pixel (0,0), so corners sit half a pixel out. PixelSpacing is
+ * [rowSpacing, colSpacing]; IOP's first vector is the +column-index direction.
+ */
+export declare function computeImagePlaneCorners(ipp: number[], iop: number[], spacing: number[], cols: number, rows: number): planeCorners;
 export declare function getLut(data: Uint16Array, windowWidth: number, windowCenter: number, invert: boolean, voiLUT: any): {
     minPixelValue: number;
     maxPixelValue: number;

package/dist/types/Renderer/copperRenderer.d.ts

@@ -8,7 +8,9 @@ export declare class copperRenderer extends baseRenderer {
     private delta;
     private interval;
     preRenderCallbackFunctions: Array<Function>;
+    private running;
     constructor(container: HTMLDivElement, options?: ICopperRenderOpt);
+    stop(): void;
     getSceneByName(name: string): copperScene | import("../Scene/baseScene").baseScene | import("..").copperMScene;
     setFPS(fps: number): void;
     setCurrentScene(sceneIn: copperScene): void;

package/dist/types/Scene/copperScene.d.ts

@@ -5,7 +5,7 @@ import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
 import { baseScene } from "./baseScene";
 import { vtkModels } from "../types/types";
 import { TrackballControls } from "three/examples/jsm/controls/TrackballControls";
-import { ICopperSceneOpts } from "../types/types";
+import { ICopperSceneOpts, aligned4DOptsType, Aligned4DController } from "../types/types";
 export declare class copperScene extends baseScene {
     clock: THREE.Clock;
     controls: Copper3dTrackballControls | OrbitControls | TrackballControls;
@@ -13,7 +13,6 @@ export declare class copperScene extends baseScene {
     private playRate;
     private modelReady;
     private clipAction;
-    private texture2dMesh;
     constructor(container: HTMLDivElement, renderer: THREE.WebGLRenderer, opt?: ICopperSceneOpts);
     loadGltf(url: string, callback?: (content: THREE.Group) => void): void;
     loadPureGLB(url: string, callback?: (mesh: THREE.Group) => void, opts?: {
@@ -22,7 +21,13 @@ export declare class copperScene extends baseScene {
     }): void;
     loadVtk(url: string): void;
     loadVtks(models: Array<vtkModels>): void;
-    texture2d(url: string): void;
+    /**
+     * Load an aligned 4D scene: a cine MRI (one slice, N cardiac phases) rendered as a
+     * world-placed plane, plus 0..N deforming surface sequences (e.g. LV endo/epi). MRI
+     * and surfaces stay in their shared patient coordinate frame (no center/scale), and
+     * advance together off ONE shared frame clock. Returns a controller (play/pause/...).
+     */
+    loadAligned4D(opts: aligned4DOptsType, callback?: (ctrl: Aligned4DController) => void): void;
     getPlayRate(): number;
     setPlayRate(playRate: number): void;
     setModelPosition(model: THREE.Group | THREE.Mesh, position: {

package/dist/types/Utils/texture2d.d.ts

@@ -1,10 +1,12 @@
 import * as THREE from "three";
 import { copperVolumeType } from "../types/types";
 import { GUI } from "dat.gui";
-export declare function createTexture2D_Zip(url: string, scene: THREE.Scene): void;
-export declare function createTexture2D_NRRD(data: Uint8Array, width: number, height: number, depth: number, callback: (mesh: THREE.Mesh) => void): void;
-export declare function createTexture2D_Array(copperVolume: copperVolumeType, depth: number, scene: THREE.Scene, gui?: GUI): {
-    mesh: THREE.Mesh<THREE.PlaneGeometry, THREE.ShaderMaterial, THREE.Object3DEventMap>;
+export interface texture2dResult {
+    mesh: THREE.Mesh;
     copperVolume: copperVolumeType;
-    updateTexture: (copperVolumeUp: copperVolumeType) => void;
-};
+    updateTexture: (copperVolume: copperVolumeType) => void;
+    setFrame: (i: number) => void;
+    setWindow: (center: number, width: number) => void;
+}
+export declare function createTexture2D_NRRD(data: Uint8Array, width: number, height: number, depth: number, callback: (mesh: THREE.Mesh) => void): void;
+export declare function createTexture2D_Array(copperVolume: copperVolumeType, depth: number, scene: THREE.Scene, gui?: GUI, aligned?: boolean): texture2dResult;

package/dist/types/index.d.ts

@@ -17,7 +17,7 @@ import { GaussianSmoother } from "./Utils/segmentation/core/GaussianSmoother";
 import { Copper3dTrackballControls } from "./Controls/Copper3dTrackballControls";
 import { MeshNodeTool } from "./Utils/MeshNodeTool";
 import { removeGuiFolderChilden } from "./Utils/segmentation/coreTools/gui";
-import { nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, exportPaintImageType, IOptVTKLoader } from "./types/types";
+import { nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, exportPaintImageType, IOptVTKLoader, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController } from "./types/types";
 import { IPaintImage, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, IGuiMeta } from "./Utils/segmentation/core/types";
 import { NrrdState } from "./Utils/segmentation/coreTools/NrrdState";
 import { GuiState } from "./Utils/segmentation/coreTools/GuiState";
@@ -25,6 +25,6 @@ import type { ToolMode, IAnnotationCallbacks } from "./Utils/segmentation/core/t
 import { CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss } from "./Utils/segmentation/core/index";
 import type { LayerId, ChannelValue } from "./Utils/segmentation/core/index";
 import "./css/style.css";
-export declare const REVISION = "v3.4.7-beta";
+export declare const REVISION = "v3.4.9-beta";
 export { copperRenderer, copperRendererOnDemond, copperMSceneRenderer, setHDRFilePath, addLabelToScene, convert3DPostoScreenPos, convertScreenPosto3DPos, addBoxHelper, fullScreenListenner, configKiwriousHeart, copperScene, copperSceneOnDemond, copperMScene, CameraViewPoint, kiwrious, NrrdTools, loading, Copper3dTrackballControls, createTexture2D_NRRD, MeshNodeTool, throttle, removeGuiFolderChilden, CHANNEL_COLORS, CHANNEL_HEX_COLORS, rgbaToHex, rgbaToCss, GaussianSmoother, };
-export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };
+export type { positionType, screenPosType, optsType, nrrdMeshesType, nrrdSliceType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, loadingBarType, IPaintImage, exportPaintImageType, IOptVTKLoader, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController, ICommXYZ, IGUIStates, IGuiParameterSettings, INrrdStates, NrrdState, GuiState, IGuiMeta, ToolMode, IAnnotationCallbacks, LayerId, ChannelValue, };

package/dist/types/types/types.d.ts

@@ -149,6 +149,12 @@ interface vtkModels {
     urls: Array<string>;
     opts?: IOptVTKLoader;
 }
+interface planeCorners {
+    tl: [number, number, number];
+    tr: [number, number, number];
+    bl: [number, number, number];
+    br: [number, number, number];
+}
 interface copperVolumeType {
     tags: any;
     width: number;
@@ -159,6 +165,42 @@ interface copperVolumeType {
     uint16: Uint16Array;
     uint8: Uint8ClampedArray;
     order: number;
+    instanceNumber?: number;
+    imagePositionPatient?: number[];
+    imageOrientationPatient?: number[];
+    pixelSpacing?: number[];
+    corners?: planeCorners;
+}
+interface aligned4DSurfaceType {
+    name: string;
+    urls: Array<string>;
+    opts?: IOptVTKLoader;
+    offset?: number;
+}
+interface aligned4DOptsType {
+    dicomUrls: Array<string>;
+    surfaces?: Array<aligned4DSurfaceType>;
+    cycleMs?: number;
+    window?: {
+        center: number;
+        width: number;
+    };
+}
+interface Aligned4DController {
+    plane: THREE.Mesh;
+    surfaceMeshes: Record<string, THREE.Mesh>;
+    frameCount: number;
+    play: () => void;
+    pause: () => void;
+    toggle: () => void;
+    setSpeed: (x: number) => void;
+    setFrame: (i: number) => void;
+    setFrameOffset: (name: string, n: number) => void;
+    setWindow: (center: number, width: number) => void;
+    setPlaneOpacity: (v: number) => void;
+    setSurfaceOpacity: (name: string, v: number) => void;
+    setSurfaceVisible: (name: string, visible: boolean) => void;
+    dispose: () => void;
 }
 interface dicomLoaderOptsType {
     gui?: GUI;
@@ -185,4 +227,4 @@ interface IMeshNodes {
     nodes: INodes;
     elements: IElements;
 }
-export type { SceneMapType, ICopperRenderOpt, stateType, modelVisualisationDataType, preRenderCallbackFunctionType, baseStateType, nrrdMeshesType, nrrdSliceType, loadingBarType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, SerialService_kiwrious, kiwriousType, mouseMovePositionType, positionType, optionsGltfExporterType, vtkModels, copperVolumeType, dicomLoaderOptsType, exportPaintImagesType, exportPaintImageType, storeExportPaintImageType, IOptVTKLoader, ICopperSceneOpts, IMeshNodes, };
+export type { SceneMapType, ICopperRenderOpt, stateType, modelVisualisationDataType, preRenderCallbackFunctionType, baseStateType, nrrdMeshesType, nrrdSliceType, loadingBarType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, SerialService_kiwrious, kiwriousType, mouseMovePositionType, positionType, optionsGltfExporterType, vtkModels, planeCorners, copperVolumeType, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController, dicomLoaderOptsType, exportPaintImagesType, exportPaintImageType, storeExportPaintImageType, IOptVTKLoader, ICopperSceneOpts, IMeshNodes, };

package/dist/types/types.d.ts

@@ -149,6 +149,12 @@ interface vtkModels {
     urls: Array<string>;
     opts?: IOptVTKLoader;
 }
+interface planeCorners {
+    tl: [number, number, number];
+    tr: [number, number, number];
+    bl: [number, number, number];
+    br: [number, number, number];
+}
 interface copperVolumeType {
     tags: any;
     width: number;
@@ -159,6 +165,42 @@ interface copperVolumeType {
     uint16: Uint16Array;
     uint8: Uint8ClampedArray;
     order: number;
+    instanceNumber?: number;
+    imagePositionPatient?: number[];
+    imageOrientationPatient?: number[];
+    pixelSpacing?: number[];
+    corners?: planeCorners;
+}
+interface aligned4DSurfaceType {
+    name: string;
+    urls: Array<string>;
+    opts?: IOptVTKLoader;
+    offset?: number;
+}
+interface aligned4DOptsType {
+    dicomUrls: Array<string>;
+    surfaces?: Array<aligned4DSurfaceType>;
+    cycleMs?: number;
+    window?: {
+        center: number;
+        width: number;
+    };
+}
+interface Aligned4DController {
+    plane: THREE.Mesh;
+    surfaceMeshes: Record<string, THREE.Mesh>;
+    frameCount: number;
+    play: () => void;
+    pause: () => void;
+    toggle: () => void;
+    setSpeed: (x: number) => void;
+    setFrame: (i: number) => void;
+    setFrameOffset: (name: string, n: number) => void;
+    setWindow: (center: number, width: number) => void;
+    setPlaneOpacity: (v: number) => void;
+    setSurfaceOpacity: (name: string, v: number) => void;
+    setSurfaceVisible: (name: string, visible: boolean) => void;
+    dispose: () => void;
 }
 interface dicomLoaderOptsType {
     gui?: GUI;
@@ -185,4 +227,4 @@ interface IMeshNodes {
     nodes: INodes;
     elements: IElements;
 }
-export type { SceneMapType, ICopperRenderOpt, stateType, modelVisualisationDataType, preRenderCallbackFunctionType, baseStateType, nrrdMeshesType, nrrdSliceType, loadingBarType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, SerialService_kiwrious, kiwriousType, mouseMovePositionType, positionType, optionsGltfExporterType, vtkModels, copperVolumeType, dicomLoaderOptsType, exportPaintImagesType, exportPaintImageType, storeExportPaintImageType, IOptVTKLoader, ICopperSceneOpts, IMeshNodes, };
+export type { SceneMapType, ICopperRenderOpt, stateType, modelVisualisationDataType, preRenderCallbackFunctionType, baseStateType, nrrdMeshesType, nrrdSliceType, loadingBarType, SensorDecodedValue_kiwrious, SensorReadResult_kiwrious, HeartRateResult_kiwrious, SerialService_kiwrious, kiwriousType, mouseMovePositionType, positionType, optionsGltfExporterType, vtkModels, planeCorners, copperVolumeType, aligned4DSurfaceType, aligned4DOptsType, Aligned4DController, dicomLoaderOptsType, exportPaintImagesType, exportPaintImageType, storeExportPaintImageType, IOptVTKLoader, ICopperSceneOpts, IMeshNodes, };

package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "copper3d",
   "description": "A 3d visualisation package base on threejs provides multiple scenes and Nrrd image load funtion.",
-  "version": "3.4.7",
+  "version": "3.4.9",
   "main": "dist/bundle.umd.js",
   "moudle": "dist/bundle.esm.js",
   "types": "dist/types/index.d.ts",