npm - copper3d - Versions diffs - 3.4.7 → 3.4.9 - Mend

copper3d 3.4.7 → 3.4.9

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (27) hide show

package/dist/Loader/copperDicomLoader.d.ts +7 -1
package/dist/Loader/copperDicomLoader.js +45 -0
package/dist/Loader/copperDicomLoader.js.map +1 -1
package/dist/Renderer/copperRenderer.d.ts +2 -0
package/dist/Renderer/copperRenderer.js +7 -0
package/dist/Renderer/copperRenderer.js.map +1 -1
package/dist/Scene/copperScene.d.ts +8 -3
package/dist/Scene/copperScene.js +173 -34
package/dist/Scene/copperScene.js.map +1 -1
package/dist/Utils/segmentation/NrrdTools.js +6 -0
package/dist/Utils/segmentation/NrrdTools.js.map +1 -1
package/dist/Utils/texture2d.d.ts +8 -6
package/dist/Utils/texture2d.js +30 -37
package/dist/Utils/texture2d.js.map +1 -1
package/dist/bundle.esm.js +261 -549
package/dist/bundle.umd.js +261 -549
package/dist/index.d.ts +3 -3
package/dist/index.js +1 -1
package/dist/index.js.map +1 -1
package/dist/types/Loader/copperDicomLoader.d.ts +7 -1
package/dist/types/Renderer/copperRenderer.d.ts +2 -0
package/dist/types/Scene/copperScene.d.ts +8 -3
package/dist/types/Utils/texture2d.d.ts +8 -6
package/dist/types/index.d.ts +3 -3
package/dist/types/types/types.d.ts +43 -1
package/dist/types/types.d.ts +43 -1
package/package.json +1 -1

package/dist/Loader/copperDicomLoader.d.ts CHANGED Viewed

@@ -1,5 +1,11 @@
-import { copperVolumeType } from "../types/types";
+import { copperVolumeType, planeCorners } from "../types/types";
 export declare function copperDicomLoader(url: string, callback?: (copperVolume: copperVolumeType) => void): void;
+/**
+ * Compute the 4 world-space corners of a DICOM image plane from its geometry tags.
+ * IPP is the CENTER of pixel (0,0), so corners sit half a pixel out. PixelSpacing is
+ * [rowSpacing, colSpacing]; IOP's first vector is the +column-index direction.
+ */
+export declare function computeImagePlaneCorners(ipp: number[], iop: number[], spacing: number[], cols: number, rows: number): planeCorners;
 export declare function getLut(data: Uint16Array, windowWidth: number, windowCenter: number, invert: boolean, voiLUT: any): {
     minPixelValue: number;
     maxPixelValue: number;

package/dist/Loader/copperDicomLoader.js CHANGED Viewed

@@ -51,6 +51,17 @@ export function copperDicomLoader(url, callback) {
             windowCenter = 226;
             windowWidth = 537;
         }
+        // Spatial geometry tags (DS VR, backslash-delimited) used to place the image plane
+        // at its true world pose, plus InstanceNumber as an ordering fallback.
+        const ipp = parseDS(dataSet.string("x00200032")); // ImagePositionPatient
+        const iop = parseDS(dataSet.string("x00200037")); // ImageOrientationPatient
+        const spacing = parseDS(dataSet.string("x00280030")); // PixelSpacing
+        let instanceNumber = parseInt(dataSet.string("x00200013"));
+        if (Number.isNaN(instanceNumber))
+            instanceNumber = undefined;
+        const corners = ipp && iop && spacing
+            ? computeImagePlaneCorners(ipp, iop, spacing, w, h)
+            : undefined;
         let pixelData = dataSet.elements.x7fe00010;
         let uint16 = convertImplicitElement(pixelData, dicomFileAsBuffer);
         let voiLUT;
@@ -69,10 +80,44 @@ export function copperDicomLoader(url, callback) {
             uint16,
             uint8,
             order,
+            instanceNumber,
+            imagePositionPatient: ipp,
+            imageOrientationPatient: iop,
+            pixelSpacing: spacing,
+            corners,
         };
         callback && callback(copperVolume);
     });
 }
+// Parse a DICOM DS/IS multi-value string ("a\\b\\c") into a number[].
+function parseDS(s) {
+    if (!s)
+        return undefined;
+    const a = s.split("\\").map((v) => parseFloat(v));
+    return a.length && !a.some((n) => Number.isNaN(n)) ? a : undefined;
+}
+/**
+ * Compute the 4 world-space corners of a DICOM image plane from its geometry tags.
+ * IPP is the CENTER of pixel (0,0), so corners sit half a pixel out. PixelSpacing is
+ * [rowSpacing, colSpacing]; IOP's first vector is the +column-index direction.
+ */
+export function computeImagePlaneCorners(ipp, iop, spacing, cols, rows) {
+    const row = new THREE.Vector3(iop[0], iop[1], iop[2]); // +column-index dir
+    const col = new THREE.Vector3(iop[3], iop[4], iop[5]); // +row-index dir
+    const sc = spacing[1]; // column spacing (along row)
+    const sr = spacing[0]; // row spacing (along col)
+    const O = new THREE.Vector3(ipp[0], ipp[1], ipp[2]); // center of pixel (0,0)
+    const p = (a, b) => O.clone()
+        .addScaledVector(row, a * sc)
+        .addScaledVector(col, b * sr)
+        .toArray();
+    return {
+        tl: p(-0.5, -0.5),
+        tr: p(cols - 0.5, -0.5),
+        bl: p(-0.5, rows - 0.5),
+        br: p(cols - 0.5, rows - 0.5),
+    };
+}
 function convertImplicitElement(elementData, dicomFileAsBuffer) {
     let w1Buffer = dicomParser.sharedCopy(dicomFileAsBuffer, elementData.dataOffset, elementData.length);
     let unit16 = new Uint16Array(w1Buffer.buffer, w1Buffer.byteOffset, w1Buffer.byteLength / Uint16Array.BYTES_PER_ELEMENT);

package/dist/Loader/copperDicomLoader.js.map CHANGED Viewed

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1	+ {"version":3,"file":"copperDicomLoader.js","sourceRoot":"","sources":["../../src/Loader/copperDicomLoader.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,KAAK,MAAM,OAAO,CAAC;AAC/B,OAAO,SAAS,MAAM,oBAAoB,CAAC;AAC3C,OAAO,WAAW,MAAM,cAAc,CAAC;AAEvC,8DAA8D;AAE9D,MAAM,MAAM,GAAG,IAAI,KAAK,CAAC,UAAU,EAAE,CAAC,eAAe,CAAC,aAAa,CAAC,CAAC;AAErE,MAAM,UAAU,iBAAiB,CAC/B,GAAW,EACX,QAAmD;IAEnD,MAAM,CAAC,IAAI,CAAC,GAAG,EAAE,CAAC,WAAW,EAAE,EAAE;QAC/B,IAAI,iBAAiB,GAAG,IAAI,UAAU,CAAC,WAA0B,CAAC,CAAC;QAEnE,MAAM,OAAO,GAAG,WAAW,CAAC,UAAU,CAAC,iBAAiB,CAAC,CAAC;QAE1D,8DAA8D;QAC9D,sBAAsB;QACtB,2EAA2E;QAE3E,yEAAyE;QACzE,OAAO;QACP,MAAM;QACN,IAAI,IAAI,GAAQ,IAAI,CAAC;QACrB,IAAI,CAAS,CAAC;QACd,IAAI,CAAS,CAAC;QACd,IAAI,MAAe,CAAC;QACpB,IAAI,YAAoB,CAAC;QACzB,IAAI,WAAmB,CAAC;QACxB,IAAI,KAAK,GAAW,CAAC,CAAC;QAEtB,IAAI;YACF,IAAI,GAAG,WAAW,CAAC,mBAAmB,CAAC,OAAO,CAAC,CAAC;YAEhD,IAAI,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE;gBAC9B,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC;aACrC;iBAAM,IAAI,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE;gBACrC,KAAK,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC;aACrC;YACD,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,OAAO;YACxC,CAAC,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,QAAQ;YACzC,MAAM,GAAG,IAAI,CAAC,WAAW,CAAC,KAAK,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,YAAY;YACzE,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,eAAe;YAC3D,WAAW,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,cAAc;SAC1D;QAAC,WAAM;YACN,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC;YAC1C,CAAC,GAAG,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC;YAC1C,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,KAAK,aAAa,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,KAAK,CAAC;YACtE,YAAY,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC,CAAC;YAC/D,WAAW,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC,CAAC;YAC9D,IAAI,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE;gBAC9B,KAAK,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC,CAAC;aACzD;iBAAM,IAAI,OAAO,CAAC,QAAQ,CAAC,SAAS,EAAE;gBACrC,KAAK,GAAG,QAAQ,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CAAC,CAAC;aACzD;SACF;QAED,IAAI,YAAY,IAAI,CAAC,IAAI,WAAW,IAAI,CAAC,EAAE;YACzC,YAAY,GAAG,GAAG,CAAC;YACnB,WAAW,GAAG,GAAG,CAAC;SACnB;QAED,mFAAmF;QACnF,uEAAuE;QACvE,MAAM,GAAG,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,uBAAuB;QACzE,MAAM,GAAG,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,0BAA0B;QAC5E,MAAM,OAAO,GAAG,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,WAAW,CAAC,CAAC,CAAC,CAAC,eAAe;QACrE,IAAI,cAAc,GAAuB,QAAQ,CAC/C,OAAO,CAAC,MAAM,CAAC,WAAW,CAAW,CACtC,CAAC;QACF,IAAI,MAAM,CAAC,KAAK,CAAC,cAAc,CAAC;YAAE,cAAc,GAAG,SAAS,CAAC;QAC7D,MAAM,OAAO,GACX,GAAG,IAAI,GAAG,IAAI,OAAO;YACnB,CAAC,CAAC,wBAAwB,CAAC,GAAG,EAAE,GAAG,EAAE,OAAO,EAAE,CAAC,EAAE,CAAC,CAAC;YACnD,CAAC,CAAC,SAAS,CAAC;QAEhB,IAAI,SAAS,GAAG,OAAO,CAAC,QAAQ,CAAC,SAAS,CAAC;QAC3C,IAAI,MAAM,GAAG,sBAAsB,CAAC,SAAS,EAAE,iBAAiB,CAAC,CAAC;QAClE,IAAI,MAAM,CAAC;QACX,IAAI,GAAG,GAAG,MAAM,CAAC,MAAM,EAAE,WAAW,EAAE,YAAY,EAAE,MAAM,EAAE,MAAM,CAAC,CAAC;QACpE,IAAI,KAAK,GAAG,IAAI,iBAAiB,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;QACjD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,GAAG,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;YACjD,KAAK,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC;SACpC;QACD,MAAM,YAAY,GAAqB;YACrC,IAAI;YACJ,KAAK,EAAE,CAAC;YACR,MAAM,EAAE,CAAC;YACT,YAAY;YACZ,WAAW;YACX,MAAM;YACN,MAAM;YACN,KAAK;YACL,KAAK;YACL,cAAc;YACd,oBAAoB,EAAE,GAAG;YACzB,uBAAuB,EAAE,GAAG;YAC5B,YAAY,EAAE,OAAO;YACrB,OAAO;SACR,CAAC;QACF,QAAQ,IAAI,QAAQ,CAAC,YAAY,CAAC,CAAC;IACrC,CAAC,CAAC,CAAC;AACL,CAAC;AAED,sEAAsE;AACtE,SAAS,OAAO,CAAC,CAAU;IACzB,IAAI,CAAC,CAAC;QAAE,OAAO,SAAS,CAAC;IACzB,MAAM,CAAC,GAAG,CAAC,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC;IAClD,OAAO,CAAC,CAAC,MAAM,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;AACrE,CAAC;AAED;;;;GAIG;AACH,MAAM,UAAU,wBAAwB,CACtC,GAAa,EACb,GAAa,EACb,OAAiB,EACjB,IAAY,EACZ,IAAY;IAEZ,MAAM,GAAG,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,oBAAoB;IAC3E,MAAM,GAAG,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,iBAAiB;IACxE,MAAM,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,6BAA6B;IACpD,MAAM,EAAE,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,0BAA0B;IACjD,MAAM,CAAC,GAAG,IAAI,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,EAAE,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,wBAAwB;IAC7E,MAAM,CAAC,GAAG,CAAC,CAAS,EAAE,CAAS,EAAE,EAAE,CACjC,CAAC,CAAC,KAAK,EAAE;SACN,eAAe,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC;SAC5B,eAAe,CAAC,GAAG,EAAE,CAAC,GAAG,EAAE,CAAC;SAC5B,OAAO,EAA8B,CAAC;IAC3C,OAAO;QACL,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,GAAG,CAAC;QACjB,EAAE,EAAE,CAAC,CAAC,IAAI,GAAG,GAAG,EAAE,CAAC,GAAG,CAAC;QACvB,EAAE,EAAE,CAAC,CAAC,CAAC,GAAG,EAAE,IAAI,GAAG,GAAG,CAAC;QACvB,EAAE,EAAE,CAAC,CAAC,IAAI,GAAG,GAAG,EAAE,IAAI,GAAG,GAAG,CAAC;KAC9B,CAAC;AACJ,CAAC;AAED,SAAS,sBAAsB,CAC7B,WAAgB,EAChB,iBAA6B;IAE7B,IAAI,QAAQ,GAAG,WAAW,CAAC,UAAU,CACnC,iBAAiB,EACjB,WAAW,CAAC,UAAU,EACtB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package/dist/Renderer/copperRenderer.d.ts CHANGED Viewed

@@ -8,7 +8,9 @@ export declare class copperRenderer extends baseRenderer {
     private delta;
     private interval;
     preRenderCallbackFunctions: Array<Function>;
+    private running;
     constructor(container: HTMLDivElement, options?: ICopperRenderOpt);
+    stop(): void;
     getSceneByName(name: string): copperScene | import("../Scene/baseScene").baseScene | import("..").copperMScene;
     setFPS(fps: number): void;
     setCurrentScene(sceneIn: copperScene): void;

package/dist/Renderer/copperRenderer.js CHANGED Viewed

@@ -10,8 +10,11 @@ export class copperRenderer extends baseRenderer {
         this.delta = 0;
         this.interval = 1 / this.fps;
         this.preRenderCallbackFunctions = [];
+        this.running = true;
         this.animate = (time) => {
             var _a, _b, _c;
+            if (!this.running)
+                return;
             switch ((_a = this.options) === null || _a === void 0 ? void 0 : _a.fpsMode) {
                 case "1":
                     // fpsControl one: 30fps
@@ -38,6 +41,10 @@ export class copperRenderer extends baseRenderer {
             }
         };
     }
+    // Stop the render loop (call on teardown to release the RAF and let GC reclaim).
+    stop() {
+        this.running = false;
+    }
     getSceneByName(name) {
         return this.sceneMap[name];
     }

package/dist/Renderer/copperRenderer.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/Scene/copperScene.d.ts CHANGED Viewed

@@ -5,7 +5,7 @@ import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
 import { baseScene } from "./baseScene";
 import { vtkModels } from "../types/types";
 import { TrackballControls } from "three/examples/jsm/controls/TrackballControls";
-import { ICopperSceneOpts } from "../types/types";
+import { ICopperSceneOpts, aligned4DOptsType, Aligned4DController } from "../types/types";
 export declare class copperScene extends baseScene {
     clock: THREE.Clock;
     controls: Copper3dTrackballControls | OrbitControls | TrackballControls;
@@ -13,7 +13,6 @@ export declare class copperScene extends baseScene {
     private playRate;
     private modelReady;
     private clipAction;
-    private texture2dMesh;
     constructor(container: HTMLDivElement, renderer: THREE.WebGLRenderer, opt?: ICopperSceneOpts);
     loadGltf(url: string, callback?: (content: THREE.Group) => void): void;
     loadPureGLB(url: string, callback?: (mesh: THREE.Group) => void, opts?: {
@@ -22,7 +21,13 @@ export declare class copperScene extends baseScene {
     }): void;
     loadVtk(url: string): void;
     loadVtks(models: Array<vtkModels>): void;
-    texture2d(url: string): void;
+    /**
+     * Load an aligned 4D scene: a cine MRI (one slice, N cardiac phases) rendered as a
+     * world-placed plane, plus 0..N deforming surface sequences (e.g. LV endo/epi). MRI
+     * and surfaces stay in their shared patient coordinate frame (no center/scale), and
+     * advance together off ONE shared frame clock. Returns a controller (play/pause/...).
+     */
+    loadAligned4D(opts: aligned4DOptsType, callback?: (ctrl: Aligned4DController) => void): void;
     getPlayRate(): number;
     setPlayRate(playRate: number): void;
     setModelPosition(model: THREE.Group | THREE.Mesh, position: {

package/dist/Scene/copperScene.js CHANGED Viewed

@@ -3,10 +3,13 @@ import { Copper3dTrackballControls } from "../Controls/Copper3dTrackballControls
 import { copperGltfLoader } from "../Loader/copperGltfLoader";
 import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
 import { copperVtkLoader, copperMultipleVtk } from "../Loader/copperVtkLoader";
-import { createTexture2D_Zip } from "../Utils/texture2d";
+import { createTexture2D_Array } from "../Utils/texture2d";
+import { copperDicomLoader } from "../Loader/copperDicomLoader";
+import { VTKLoader } from "three/examples/jsm/loaders/VTKLoader.js";
 import { baseScene } from "./baseScene";
 import { TrackballControls } from "three/examples/jsm/controls/TrackballControls";
 export class copperScene extends baseScene {
+    // rayster pick
     constructor(container, renderer, opt) {
         super(container, renderer, opt);
         this.clock = new THREE.Clock();
@@ -14,9 +17,6 @@ export class copperScene extends baseScene {
         this.mixer = null;
         this.playRate = 1.0;
         this.modelReady = false;
-        // rayster pick
-        // texture2d
-        this.texture2dMesh = null;
         if ((opt === null || opt === void 0 ? void 0 : opt.controls) === "trackball") {
             this.controls = new TrackballControls(this.camera, this.renderer.domElement);
         }
@@ -222,38 +222,177 @@ export class copperScene extends baseScene {
             this.exportContent.animations.push(clip);
         };
     }
-    // texture2d
-    texture2d(url) {
-        createTexture2D_Zip(url, this.scene);
-        const textureInterval = setInterval(() => {
-            var _a;
-            this.scene.children.forEach((child) => {
-                if (child.isMesh) {
-                    if (child.name === "texture2d_mesh_zip") {
-                        this.texture2dMesh = child;
-                        const render_texture2d = () => {
-                            if (this.texture2dMesh) {
-                                let value = this.texture2dMesh.material.uniforms["depth"].value;
-                                value += this.depthStep;
-                                if (value > 109.0 || value < 0.0) {
-                                    if (value > 1.0)
-                                        value = 109.0 * 2.0 - value;
-                                    if (value < 0.0)
-                                        value = -value;
-                                    this.depthStep = -this.depthStep;
-                                }
-                                this.texture2dMesh.material.uniforms["depth"].value =
-                                    value;
-                            }
-                        };
-                        this.addPreRenderCallbackFunction(render_texture2d);
-                    }
-                }
+    /**
+     * Load an aligned 4D scene: a cine MRI (one slice, N cardiac phases) rendered as a
+     * world-placed plane, plus 0..N deforming surface sequences (e.g. LV endo/epi). MRI
+     * and surfaces stay in their shared patient coordinate frame (no center/scale), and
+     * advance together off ONE shared frame clock. Returns a controller (play/pause/...).
+     */
+    loadAligned4D(opts, callback) {
+        var _a;
+        const dicomDepth = opts.dicomUrls.length;
+        const loadDicomStack = () => new Promise((resolve) => {
+            const volumes = [];
+            opts.dicomUrls.forEach((url) => {
+                copperDicomLoader(url, (volume) => {
+                    volumes.push(volume);
+                    if (volumes.length !== dicomDepth)
+                        return;
+                    // order frames by cardiac phase (TriggerTime / SliceLocation)
+                    volumes.sort((a, b) => a.order - b.order);
+                    const frameSize = volumes[0].width * volumes[0].height;
+                    const uint8 = new Uint8ClampedArray(frameSize * dicomDepth);
+                    const uint16 = new Uint16Array(uint8.length);
+                    volumes.forEach((v, index) => {
+                        uint8.set(v.uint8, index * frameSize);
+                        uint16.set(v.uint16, index * frameSize);
+                    });
+                    const stacked = Object.assign(Object.assign({}, volumes[0]), { uint8,
+                        uint16 });
+                    resolve(stacked);
+                });
+            });
+        });
+        const loadSurfaceSequence = (urls) => new Promise((resolve) => {
+            const loader = new VTKLoader();
+            const geometries = new Array(urls.length);
+            let done = 0;
+            urls.forEach((url, index) => {
+                loader.load(url, (geometry) => {
+                    // keep world coordinates — no center()/scale()
+                    geometry.computeVertexNormals();
+                    geometries[index] = geometry;
+                    if (++done === urls.length)
+                        resolve(geometries);
+                });
             });
-            if (((_a = this.texture2dMesh) === null || _a === void 0 ? void 0 : _a.name) === "texture2d_mesh_zip") {
-                clearInterval(textureInterval);
+        });
+        const surfaceDefs = (_a = opts.surfaces) !== null && _a !== void 0 ? _a : [];
+        Promise.all([
+            loadDicomStack(),
+            ...surfaceDefs.map((s) => loadSurfaceSequence(s.urls)),
+        ]).then(([stacked, ...surfaceGeoms]) => {
+            var _a;
+            if (opts.window) {
+                stacked.windowCenter = opts.window.center;
+                stacked.windowWidth = opts.window.width;
             }
-        }, 500);
+            const tex = createTexture2D_Array(stacked, dicomDepth, this.scene, undefined, true);
+            tex.setFrame(0);
+            if (opts.window)
+                tex.setWindow(opts.window.center, opts.window.width);
+            const surfaceMeshes = {};
+            const seqs = [];
+            surfaceDefs.forEach((def, i) => {
+                var _a;
+                const geometries = surfaceGeoms[i];
+                const { vtkmaterial } = copperMultipleVtk(def.opts);
+                const mesh = new THREE.Mesh(geometries[0], vtkmaterial);
+                mesh.name = def.name;
+                this.scene.add(mesh);
+                surfaceMeshes[def.name] = mesh;
+                seqs.push({ mesh, geometries, offset: (_a = def.offset) !== null && _a !== void 0 ? _a : 0 });
+            });
+            const frameCount = dicomDepth;
+            // Default one cardiac cycle ≈ 1012ms (32 phases × ~31.6ms) unless overridden.
+            const cycleMs = (_a = opts.cycleMs) !== null && _a !== void 0 ? _a : 1012;
+            let frameIndex = 0;
+            let speed = 1;
+            let playing = true;
+            let disposed = false;
+            let lastStep = performance.now();
+            const dtBase = cycleMs / frameCount;
+            const applyFrame = () => {
+                tex.setFrame(frameIndex);
+                for (const s of seqs) {
+                    const i = (frameIndex + s.offset + s.geometries.length) % s.geometries.length;
+                    s.mesh.geometry = s.geometries[i];
+                }
+            };
+            const tick = () => {
+                if (disposed || !playing)
+                    return;
+                const now = performance.now();
+                if (now - lastStep >= dtBase / speed) {
+                    lastStep = now;
+                    frameIndex = (frameIndex + 1) % frameCount;
+                    applyFrame();
+                }
+            };
+            this.addPreRenderCallbackFunction(tick);
+            const clockId = tick.id;
+            const ctrl = {
+                plane: tex.mesh,
+                surfaceMeshes,
+                frameCount,
+                play: () => {
+                    playing = true;
+                    lastStep = performance.now();
+                },
+                pause: () => {
+                    playing = false;
+                },
+                toggle: () => {
+                    playing = !playing;
+                    lastStep = performance.now();
+                },
+                setSpeed: (x) => {
+                    speed = Math.max(0.01, x);
+                },
+                setFrame: (i) => {
+                    frameIndex = ((i % frameCount) + frameCount) % frameCount;
+                    applyFrame();
+                },
+                setFrameOffset: (name, n) => {
+                    const s = seqs.find((q) => q.mesh.name === name);
+                    if (s) {
+                        s.offset = n;
+                        applyFrame();
+                    }
+                },
+                setWindow: (center, width) => {
+                    tex.setWindow(center, width);
+                },
+                setPlaneOpacity: (v) => {
+                    const m = tex.mesh.material;
+                    m.transparent = v < 1;
+                    m.uniforms.uOpacity.value = v;
+                    m.needsUpdate = true;
+                },
+                setSurfaceOpacity: (name, v) => {
+                    const mesh = surfaceMeshes[name];
+                    if (!mesh)
+                        return;
+                    const m = mesh.material;
+                    m.transparent = v < 1;
+                    m.opacity = v;
+                    m.needsUpdate = true;
+                },
+                setSurfaceVisible: (name, visible) => {
+                    const mesh = surfaceMeshes[name];
+                    if (mesh)
+                        mesh.visible = visible;
+                },
+                dispose: () => {
+                    var _a, _b;
+                    disposed = true;
+                    this.removePreRenderCallbackFunction(clockId);
+                    // plane
+                    this.scene.remove(tex.mesh);
+                    tex.mesh.geometry.dispose();
+                    const pm = tex.mesh.material;
+                    (_b = (_a = pm.uniforms.diffuse.value) === null || _a === void 0 ? void 0 : _a.dispose) === null || _b === void 0 ? void 0 : _b.call(_a);
+                    pm.dispose();
+                    // surfaces
+                    for (const s of seqs) {
+                        this.scene.remove(s.mesh);
+                        s.geometries.forEach((g) => g.dispose());
+                        s.mesh.material.dispose();
+                    }
+                },
+            };
+            callback && callback(ctrl);
+        });
     }
     getPlayRate() {
         return this.playRate;

package/dist/Scene/copperScene.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/Utils/segmentation/NrrdTools.js CHANGED Viewed

@@ -180,6 +180,12 @@ export class NrrdTools {
             updateWindowLow: this.guiParameterSettings.windowLow.onChange,
             finishContrastAdjustment: this.guiParameterSettings.windowHigh.onFinished,
         };
+        // setupGUI may run AFTER images are loaded (e.g. the register/origin-switch load
+        // path), in which case the on-load syncGuiParameterSettings() ran while
+        // guiParameterSettings was still undefined and silently skipped the binding. Bind
+        // now so the window slider reflects the current volume's real min/max/window instead
+        // of the default 0/0 (which froze the slider and turned the image white on zoom).
+        this.syncGuiParameterSettings();
     }
     /**
      * Sync guiParameterSettings with current volume metadata.