copper3d 1.15.0

package/dist/Scene/copperScene.js

@@ -0,0 +1,303 @@
+import * as THREE from "three";
+import { Copper3dTrackballControls } from "../Controls/Copper3dTrackballControls";
+import { copperGltfLoader } from "../Loader/copperGltfLoader";
+import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
+import { copperVtkLoader, copperMultipleVtk } from "../Loader/copperVtkLoader";
+import { createTexture2D_Zip } from "../Utils/texture2d";
+import baseScene from "./baseScene";
+export default class copperScene extends baseScene {
+    // private preRenderCallbackFunctions: Array<preRenderCallbackFunctionType> = [];
+    // private preRenderCallbackFunctions: preRenderCallbackFunctionType;
+    // private sort: boolean = true; //default ascending order
+    constructor(container, renderer, alpha) {
+        super(container, renderer, alpha);
+        this.clock = new THREE.Clock();
+        // isHalfed: boolean = false;
+        this.mixer = null;
+        this.playRate = 1.0;
+        this.modelReady = false;
+        // rayster pick
+        // texture2d
+        // private depthStep: number = 0.4;
+        this.texture2dMesh = null;
+        this.controls = new Copper3dTrackballControls(this.camera, this.renderer.domElement);
+        this.controls.panSpeed = 3;
+        this.controls.rotateSpeed = 3;
+        window.addEventListener("resize", this.onWindowResize, false);
+    }
+    loadGltf(url, callback) {
+        const loader = copperGltfLoader(this.renderer);
+        loader.load(url, (gltf) => {
+            const box = new THREE.Box3().setFromObject(gltf.scene);
+            const size = box.getSize(new THREE.Vector3()).length();
+            const center = box.getCenter(new THREE.Vector3());
+            this.controls.maxDistance = size * 10;
+            gltf.scene.position.x += gltf.scene.position.x - center.x;
+            gltf.scene.position.y += gltf.scene.position.y - center.y;
+            gltf.scene.position.z += gltf.scene.position.z - center.z;
+            if (!this.cameraPositionFlag) {
+                this.camera.position.copy(center);
+                this.camera.position.x += size / 2.0;
+                this.camera.position.y += size / 5.0;
+                this.camera.position.z += size / 2.0;
+                this.camera.lookAt(center);
+                this.viewPoint = this.setViewPoint(this.camera, [center.x, center.y, center.z]);
+            }
+            this.mixer = new THREE.AnimationMixer(gltf.scene);
+            gltf.animations.forEach((a, index) => {
+                var _a, _b;
+                if (index === 0)
+                    this.clipAction = (_a = this.mixer) === null || _a === void 0 ? void 0 : _a.clipAction(a).play();
+                else
+                    (_b = this.mixer) === null || _b === void 0 ? void 0 : _b.clipAction(a).play();
+            });
+            this.content = gltf.scene;
+            this.exportContent.copy(gltf.scene);
+            this.exportContent.animations = gltf.animations;
+            this.scene.add(gltf.scene);
+            this.modelReady = true;
+            callback && callback(gltf.scene);
+        }, (error) => {
+            // console.log(error);
+        });
+    }
+    // loadOBJ(url: string, callback?: (mesh: THREE.Group) => void) {
+    //   objLoader.load(
+    //     url,
+    //     (obj) => {
+    //       obj.traverse((child) => {
+    //         if ((child as THREE.Mesh).isMesh) {
+    //           // (child as THREE.Mesh).material = new THREE.MeshStandardMaterial({
+    //           //   side: THREE.DoubleSide,
+    //           //   color: 0xffffff,
+    //           // });
+    //           // ((child as THREE.Mesh).material as THREE.MeshPhongMaterial).color =
+    //           //   new THREE.Color(0xffffff);
+    //         }
+    //       });
+    //       const box = new THREE.Box3().setFromObject(obj);
+    //       const size = box.getSize(new THREE.Vector3()).length();
+    //       const center = box.getCenter(new THREE.Vector3());
+    //       this.controls.maxDistance = size * 10;
+    //       obj.position.x += obj.position.x - center.x;
+    //       obj.position.y += obj.position.y - center.y;
+    //       obj.position.z += obj.position.z - center.z;
+    //       if (!this.cameraPositionFlag) {
+    //         this.camera.position.copy(center);
+    //         this.camera.position.x += size / 2.0;
+    //         this.camera.position.y += size / 5.0;
+    //         this.camera.position.z += size / 2.0;
+    //         this.camera.lookAt(center);
+    //         this.viewPoint = this.setViewPoint(
+    //           this.camera as THREE.PerspectiveCamera,
+    //           [center.x, center.y, center.z]
+    //         );
+    //       }
+    //       this.scene.add(obj);
+    //       !!callback && callback(obj);
+    //     }, // called when loading is in progresses
+    //     (xhr: any) => {
+    //       console.log((xhr.loaded / xhr.total) * 100 + "% loaded");
+    //     },
+    //     // called when loading has errors
+    //     (error: any) => {
+    //       console.log("An error happened");
+    //     }
+    //   );
+    // }
+    loadVtk(url) {
+        copperVtkLoader(url, this.scene, this.content);
+    }
+    loadVtks(models) {
+        let count = 0;
+        let { vtkLoader } = copperMultipleVtk();
+        const group = new THREE.Group();
+        const finishInterval = setInterval(() => {
+            if (count === models.length) {
+                this.scene.add(this.exportContent);
+                this.mixer = new THREE.AnimationMixer(group);
+                this.exportContent.animations.forEach((clip) => {
+                    var _a;
+                    const action = (_a = this.mixer) === null || _a === void 0 ? void 0 : _a.clipAction(clip);
+                    action.timeScale = 3;
+                    action.play();
+                });
+                this.modelReady = true;
+                clearInterval(finishInterval);
+            }
+        }, 100);
+        models.forEach((model) => {
+            const geometries = [];
+            model.urls.forEach((url, index) => {
+                vtkLoader.load(url, (geometry) => {
+                    geometry.center();
+                    geometry.computeVertexNormals();
+                    geometry.name = index.toString();
+                    geometries.push(geometry);
+                    if (geometries.length === model.urls.length) {
+                        // sort the vtks by index order
+                        geometries.sort((a, b) => {
+                            if (this.sort) {
+                                return parseInt(a.name) - parseInt(b.name);
+                            }
+                            else {
+                                return parseInt(b.name) - parseInt(a.name);
+                            }
+                        });
+                        finishLoad(geometries, model);
+                        count += 1;
+                    }
+                });
+            });
+        });
+        const finishLoad = (geometries, model) => {
+            let { vtkmaterial } = copperMultipleVtk(model.opts);
+            let geometry = geometries[0];
+            const position = geometry.attributes.position;
+            geometries.forEach((child, index) => {
+                if (index === 0) {
+                    geometry = child;
+                    geometry.morphAttributes.position = [];
+                }
+                else {
+                    // if (index == 1) {
+                    //   geometry.morphAttributes.position.push(position);
+                    // }
+                    // if (index == 6) {
+                    //   geometry.morphAttributes.position.push(child.attributes.position);
+                    // }
+                    // if (index == 7) {
+                    //   geometry.morphAttributes.position.push(position);
+                    // }
+                    geometry.morphAttributes.position.push(child.attributes.position);
+                }
+            });
+            const mesh = new THREE.Mesh(geometry, vtkmaterial);
+            mesh.scale.multiplyScalar(0.1);
+            group.add(mesh);
+            this.exportContent.add(group);
+            mesh.morphTargetInfluences = [];
+            mesh.name = model.name;
+            let j = 0;
+            let tracks = [];
+            let duration = geometries.length - 1;
+            // let duration = 5;
+            for (let i = 0; i < duration; i++) {
+                const track = new THREE.KeyframeTrack(`${mesh.name}.morphTargetInfluences[${i}]`, [j, j + 1, j + 2], [0, 1, 0]);
+                tracks.push(track);
+                j = j + 2;
+            }
+            const clip = new THREE.AnimationClip(`copper3d_heart_morph_${mesh.name}`, duration, tracks);
+            this.exportContent.animations.push(clip);
+        };
+    }
+    // texture2d
+    texture2d(url) {
+        createTexture2D_Zip(url, this.scene);
+        const textureInterval = setInterval(() => {
+            var _a;
+            this.scene.children.forEach((child) => {
+                if (child.isMesh) {
+                    if (child.name === "texture2d_mesh_zip") {
+                        this.texture2dMesh = child;
+                        const render_texture2d = () => {
+                            if (this.texture2dMesh) {
+                                let value = this.texture2dMesh.material.uniforms["depth"].value;
+                                value += this.depthStep;
+                                if (value > 109.0 || value < 0.0) {
+                                    if (value > 1.0)
+                                        value = 109.0 * 2.0 - value;
+                                    if (value < 0.0)
+                                        value = -value;
+                                    this.depthStep = -this.depthStep;
+                                }
+                                this.texture2dMesh.material.uniforms["depth"].value =
+                                    value;
+                            }
+                        };
+                        this.addPreRenderCallbackFunction(render_texture2d);
+                    }
+                }
+            });
+            if (((_a = this.texture2dMesh) === null || _a === void 0 ? void 0 : _a.name) === "texture2d_mesh_zip") {
+                clearInterval(textureInterval);
+            }
+        }, 500);
+    }
+    getPlayRate() {
+        return this.playRate;
+    }
+    setPlayRate(playRate) {
+        this.playRate = playRate;
+    }
+    setModelPosition(model, position) {
+        if (position.x)
+            model.position.x = position.x;
+        if (position.y)
+            model.position.y = position.y;
+        if (position.z)
+            model.position.z = position.z;
+    }
+    resetView() {
+        this.controls.reset();
+        this.updateCamera(this.viewPoint);
+    }
+    updateCamera(viewpoint) {
+        this.cameraPositionFlag = true;
+        this.copperControl.updateCameraViewPoint(viewpoint);
+    }
+    getCurrentTime() {
+        let currentTime = 0;
+        if (this.clipAction) {
+            currentTime = this.clipAction.time / this.clipAction._clip.duration;
+        }
+        return currentTime;
+    }
+    getCurrentMixer() {
+        return this.mixer;
+    }
+    updateControls(camera) {
+        this.controls.dispose();
+        this.controls = new OrbitControls(camera, this.renderer.domElement);
+        // this.controls.target.set(64, 64, 128);
+        this.controls.target.set(0, 0, 0);
+        this.controls.minZoom = 0.5;
+        this.controls.maxZoom = 4;
+        // this.controls.enablePan = false;
+        this.controls.update();
+    }
+    onRenderCameraChange() {
+        const { width, height } = this.container.getBoundingClientRect();
+        const aspect = width / height;
+        if (this.renderNrrdVolume) {
+            const volumeCamera = this.camera;
+            const frustumHeight = volumeCamera.top - volumeCamera.bottom;
+            volumeCamera.left = (-frustumHeight * aspect) / 2;
+            volumeCamera.right = (frustumHeight * aspect) / 2;
+        }
+        else {
+            this.camera.aspect = aspect;
+        }
+        this.camera.updateProjectionMatrix();
+    }
+    render() {
+        this.controls.update();
+        if (this.modelReady) {
+            this.mixer && this.mixer.update(this.clock.getDelta() * this.playRate);
+        }
+        Object.values(this.preRenderCallbackFunctions.cache).forEach((item) => {
+            item && item.call(null);
+        });
+        if (this.subDiv && this.subCamera && this.subRender) {
+            this.subCamera.aspect =
+                this.subDiv.clientWidth / this.subDiv.clientHeight;
+            this.subCamera.updateProjectionMatrix();
+            this.subRender.setSize(this.subDiv.clientWidth, this.subDiv.clientHeight);
+            this.subCamera.position.copy(this.camera.position);
+            this.subCamera.lookAt(this.subScene.position);
+            this.subRender.render(this.subScene, this.subCamera);
+        }
+        this.renderer.render(this.scene, this.camera);
+    }
+}
+//# sourceMappingURL=copperScene.js.map

package/dist/Scene/copperScene.js.map

@@ -0,0 +1 @@
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package/dist/Scene/copperSceneOnDemond.d.ts

@@ -0,0 +1,13 @@
+import * as THREE from "three";
+import baseScene from "./baseScene";
+import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
+export default class copperSceneOnDemond extends baseScene {
+    controls: OrbitControls;
+    renderRequested: boolean | undefined;
+    isResize: boolean;
+    constructor(container: HTMLDivElement, renderer: THREE.WebGLRenderer);
+    loadGltf(url: string, callback?: (content: THREE.Group) => void): void;
+    confirmResize: () => void;
+    render: () => void;
+    requestRenderIfNotRequested: () => void;
+}

package/dist/Scene/copperSceneOnDemond.js

@@ -0,0 +1,60 @@
+import * as THREE from "three";
+import baseScene from "./baseScene";
+import { copperGltfLoader } from "../Loader/copperGltfLoader";
+import { OrbitControls } from "three/examples/jsm/controls/OrbitControls";
+export default class copperSceneOnDemond extends baseScene {
+    constructor(container, renderer) {
+        super(container, renderer);
+        this.renderRequested = false;
+        this.isResize = false;
+        this.confirmResize = () => {
+            this.isResize = true;
+            this.requestRenderIfNotRequested();
+        };
+        this.render = () => {
+            this.renderRequested = undefined;
+            this.controls.update();
+            this.renderer.render(this.scene, this.camera);
+        };
+        this.requestRenderIfNotRequested = () => {
+            if (!this.renderRequested) {
+                if (this.isResize) {
+                    this.isResize = false;
+                    this.onWindowResize();
+                }
+                this.renderRequested = true;
+                requestAnimationFrame(this.render);
+            }
+        };
+        this.controls = new OrbitControls(this.camera, renderer.domElement);
+        this.controls.addEventListener("change", this.requestRenderIfNotRequested);
+        window.addEventListener("resize", this.confirmResize, false);
+        requestAnimationFrame(this.render);
+    }
+    loadGltf(url, callback) {
+        const loader = copperGltfLoader(this.renderer);
+        loader.load(url, (gltf) => {
+            const box = new THREE.Box3().setFromObject(gltf.scene);
+            const size = box.getSize(new THREE.Vector3()).length();
+            const center = box.getCenter(new THREE.Vector3());
+            this.controls.maxDistance = size * 10;
+            gltf.scene.position.x += gltf.scene.position.x - center.x;
+            gltf.scene.position.y += gltf.scene.position.y - center.y;
+            gltf.scene.position.z += gltf.scene.position.z - center.z;
+            if (!this.cameraPositionFlag) {
+                this.camera.position.copy(center);
+                this.camera.position.x += size / 2.0;
+                this.camera.position.y += size / 5.0;
+                this.camera.position.z += size / 2.0;
+                this.camera.lookAt(center);
+                this.viewPoint = this.setViewPoint(this.camera, [center.x, center.y, center.z]);
+            }
+            this.content = gltf.scene;
+            this.scene.add(gltf.scene);
+            callback && callback(gltf.scene);
+        }, (error) => {
+            // console.log(error);
+        });
+    }
+}
+//# sourceMappingURL=copperSceneOnDemond.js.map

package/dist/Scene/copperSceneOnDemond.js.map

@@ -0,0 +1 @@
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package/dist/Utils/add3DLabel.d.ts

@@ -0,0 +1,18 @@
+import baseScene from "../Scene/baseScene";
+import copperMScene from "../Scene/copperMScene";
+import * as THREE from "three";
+export declare function addLabelToScene(scene: baseScene | copperMScene, text: string, x: number, y: number, z: number, scaling: number, option?: {
+    font_size: string;
+    font: string;
+}): void;
+export interface positionType {
+    x: number;
+    y: number;
+    z: number;
+}
+export interface screenPosType {
+    x: number;
+    y: number;
+}
+export declare function convertScreenPosto3DPos(container: HTMLDivElement | HTMLCanvasElement, camera: THREE.PerspectiveCamera, pos: screenPosType): positionType;
+export declare function convert3DPostoScreenPos(container: HTMLDivElement | HTMLCanvasElement, camera: THREE.PerspectiveCamera, mesh: THREE.Object3D | THREE.Mesh | THREE.Sprite): screenPosType;

package/dist/Utils/add3DLabel.js

@@ -0,0 +1,66 @@
+import * as THREE from "three";
+function createFont(text, x, y, z, scaling, option) {
+    const bitmap = document.createElement("canvas");
+    bitmap.width = 512;
+    bitmap.height = 512;
+    const g = bitmap.getContext("2d");
+    g.textBaseline = "alphabetic";
+    const metrics = g.measureText(text);
+    const textWidth = metrics.width;
+    g.fillStyle = "rgb(255,255,255)";
+    g.textAlign = "center";
+    if (option) {
+        g.font = option.font_size + " " + option.font;
+    }
+    else {
+        g.font = "30px Helvetica";
+    }
+    g.fillText(text, 256, 256);
+    g.strokeStyle = "rgb(255,255,255)";
+    g.strokeText(text, 256, 256);
+    const texture = new THREE.Texture(bitmap);
+    texture.needsUpdate = true;
+    const spriteMaterial = new THREE.SpriteMaterial({
+        map: texture,
+        color: "#ffffff",
+    });
+    const sprite = new THREE.Sprite(spriteMaterial);
+    sprite.scale.set(scaling, scaling, 1.0);
+    sprite.position.set(x, y, z);
+    return sprite;
+}
+export function addLabelToScene(scene, text, x, y, z, scaling, option) {
+    const label = createFont(text, x, y, z, scaling, option);
+    scene.addObject(label);
+}
+export function convertScreenPosto3DPos(container, camera, pos) {
+    let vec = new THREE.Vector3();
+    let targetPosition;
+    let target = new THREE.Vector3();
+    vec.set((pos.x / container.clientWidth) * 2 - 1, -(pos.y / container.clientHeight) * 2 + 1, 0.5);
+    vec.unproject(camera);
+    vec.sub(camera.position).normalize();
+    const distance = (0.2 - camera.position.z) / vec.z;
+    target.copy(camera.position).add(vec.multiplyScalar(distance));
+    targetPosition = {
+        x: target.x,
+        y: target.y,
+        z: target.z,
+    };
+    return targetPosition;
+}
+export function convert3DPostoScreenPos(container, camera, mesh) {
+    const worldVetor = new THREE.Vector3();
+    mesh.getWorldPosition(worldVetor);
+    const standardVector = worldVetor.project(camera);
+    const centerX = container.clientWidth / 2;
+    const centerY = container.clientHeight / 2;
+    const x = Math.round(centerX * standardVector.x + centerX);
+    const y = Math.round(centerY * standardVector.y + centerY);
+    const pos = {
+        x,
+        y,
+    };
+    return pos;
+}
+//# sourceMappingURL=add3DLabel.js.map

package/dist/Utils/add3DLabel.js.map

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package/dist/Utils/download.d.ts

@@ -0,0 +1 @@
+export declare function saveFileAsJson(blob: Blob, name: string): void;

package/dist/Utils/download.js

@@ -0,0 +1,21 @@
+import * as Saver from "file-saver";
+// 1. npm i file-saver
+// 2. npm i --save-dev @types/file-saver
+// var FileSaver = require("file-saver");
+export function saveFileAsJson(blob, name) {
+    if (!!Saver && !!Saver.default) {
+        Saver.default.saveAs(blob, name);
+    }
+    else if (!!Saver) {
+        Saver.saveAs(blob, name);
+    }
+    else {
+        var FileSaver = require("file-saver");
+        FileSaver.saveAs(blob, name);
+    }
+}
+// var FileSaver = require("file-saver");
+// export function saveFileAsJson(blob: Blob, name: string) {
+//   FileSaver.saveAs(blob, name);
+// }
+//# sourceMappingURL=download.js.map

package/dist/Utils/download.js.map

@@ -0,0 +1 @@
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package/dist/Utils/getVOILUT.d.ts

@@ -0,0 +1,13 @@
+/**
+ * Retrieve a VOI LUT mapping function given the current windowing settings
+ * and the VOI LUT for the image
+ *
+ * @param {Number} windowWidth Window Width
+ * @param {Number} windowCenter Window Center
+ * @param {LUT} [voiLUT] Volume of Interest Lookup Table Object
+ * @param {Boolean} roundModalityLUTValues Do a Math.round of modality lut to compute non linear voilut
+ *
+ * @return {VOILUTFunction} VOI LUT mapping function
+ * @memberof VOILUT
+ */
+export default function getVOILUT(windowWidth: number, windowCenter: number, voiLUT: any, roundModalityLUTValues: boolean): (modalityLutValue: number) => number;

package/dist/Utils/getVOILUT.js

@@ -0,0 +1,78 @@
+/* eslint no-bitwise: 0 */
+/**
+ * Volume of Interest Lookup Table Function
+ *
+ * @typedef {Function} VOILUTFunction
+ *
+ * @param {Number} modalityLutValue
+ * @returns {Number} transformed value
+ * @memberof Objects
+ */
+/**
+ * @module: VOILUT
+ */
+/**
+ *
+ * @param {Number} windowWidth Window Width
+ * @param {Number} windowCenter Window Center
+ * @returns {VOILUTFunction} VOI LUT mapping function
+ * @memberof VOILUT
+ */
+function generateLinearVOILUT(windowWidth, windowCenter) {
+    return function (modalityLutValue) {
+        return ((modalityLutValue - windowCenter) / windowWidth + 0.5) * 255.0;
+    };
+}
+/**
+ * Generate a non-linear volume of interest lookup table
+ *
+ * @param {LUT} voiLUT Volume of Interest Lookup Table Object
+ * @param {Boolean} roundModalityLUTValues Do a Math.round of modality lut to compute non linear voilut
+ *
+ * @returns {VOILUTFunction} VOI LUT mapping function
+ * @memberof VOILUT
+ */
+function generateNonLinearVOILUT(voiLUT, roundModalityLUTValues) {
+    // We don't trust the voiLUT.numBitsPerEntry, mainly thanks to Agfa!
+    const bitsPerEntry = Math.max(...voiLUT.lut).toString(2).length;
+    const shift = bitsPerEntry - 8;
+    const minValue = voiLUT.lut[0] >> shift;
+    const maxValue = voiLUT.lut[voiLUT.lut.length - 1] >> shift;
+    const maxValueMapped = voiLUT.firstValueMapped + voiLUT.lut.length - 1;
+    return function (modalityLutValue) {
+        if (modalityLutValue < voiLUT.firstValueMapped) {
+            return minValue;
+        }
+        else if (modalityLutValue >= maxValueMapped) {
+            return maxValue;
+        }
+        if (roundModalityLUTValues) {
+            return (voiLUT.lut[Math.round(modalityLutValue) - voiLUT.firstValueMapped] >>
+                shift);
+        }
+        return voiLUT.lut[modalityLutValue - voiLUT.firstValueMapped] >> shift;
+    };
+}
+/**
+ * Retrieve a VOI LUT mapping function given the current windowing settings
+ * and the VOI LUT for the image
+ *
+ * @param {Number} windowWidth Window Width
+ * @param {Number} windowCenter Window Center
+ * @param {LUT} [voiLUT] Volume of Interest Lookup Table Object
+ * @param {Boolean} roundModalityLUTValues Do a Math.round of modality lut to compute non linear voilut
+ *
+ * @return {VOILUTFunction} VOI LUT mapping function
+ * @memberof VOILUT
+ */
+//export default function (windowWidth, windowCenter, voiLUT, roundModalityLUTValues) {
+export default function getVOILUT(windowWidth, windowCenter, voiLUT, roundModalityLUTValues) {
+    if (voiLUT) {
+        return generateNonLinearVOILUT(voiLUT, roundModalityLUTValues);
+    }
+    return generateLinearVOILUT(windowWidth, windowCenter);
+}
+// module.exports = {
+//   getVOILUT,
+// };
+//# sourceMappingURL=getVOILUT.js.map

package/dist/Utils/getVOILUT.js.map

@@ -0,0 +1 @@
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package/dist/Utils/kiwrious/configKiwrious.d.ts

@@ -0,0 +1,4 @@
+import { kiwriousType } from "../../types/types";
+declare const kiwrious: kiwriousType;
+export default kiwrious;
+export declare function configKiwriousHeart(connectBtn: HTMLButtonElement, disconnectBtn: HTMLButtonElement, binUrl: string, wasmUrl: string, connectionCallback: (isConnected: boolean) => void, heartDataCallback: (heartData: any, status: string, hrVal: number) => void): void;