copper3d 1.15.0

package/dist/Loader/copperNrrdLoader.js

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+import * as THREE from "three";
+import { NRRDLoader } from "three/examples/jsm/loaders/NRRDLoader";
+import { VolumeRenderShader1 } from "three/examples/jsm/shaders/VolumeShader";
+import cm_gray from "../css/images/cm_gray.png";
+import cm_viridis from "../css/images/cm_viridis.png";
+import { GUI } from "dat.gui";
+import { DecalGeometry } from "three/examples/jsm/geometries/DecalGeometry";
+import { loading } from "../Utils/utils";
+import { resize3dnrrd } from "./convet";
+let loader;
+loader = new NRRDLoader();
+// loader.setSegmentationn(true);
+let cube;
+let gui;
+let oldGuiDom;
+let CircleGeometry = new THREE.RingGeometry(5, 6, 30);
+let CircleMaterial = new THREE.MeshBasicMaterial({
+    transparent: true,
+    side: THREE.DoubleSide,
+});
+export function copperNrrdLoader(url, loadingBar, segmentation, callback, opts) {
+    let nrrdMeshes;
+    let nrrdSlices;
+    let { loadingContainer, progress } = loadingBar;
+    let name = url.split("/").pop();
+    loader.setSegmentation(segmentation);
+    loader.load(url, function (volume) {
+        configGui(opts);
+        const rasdimensions = volume.RASDimensions;
+        const dimensions = volume.dimensions;
+        const ratio = volume.spacing;
+        const initIndexZ = Math.floor(dimensions[2] / 2);
+        const initIndexY = Math.floor(dimensions[1] / 2);
+        const initIndexX = Math.floor(dimensions[0] / 2);
+        const sliceZ = volume.extractSlice("z", initIndexZ * ratio[2]);
+        const sliceY = volume.extractSlice("y", initIndexY * ratio[1]);
+        //x plane
+        const sliceX = volume.extractSlice("x", initIndexX * ratio[0]);
+        sliceZ.initIndex = initIndexZ;
+        sliceY.initIndex = initIndexY;
+        sliceX.initIndex = initIndexX;
+        sliceZ.MaxIndex = dimensions[2] - 1;
+        sliceY.MaxIndex = dimensions[1] - 1;
+        sliceX.MaxIndex = dimensions[0] - 1;
+        sliceZ.RSARatio = ratio[2];
+        sliceY.RSARatio = ratio[1];
+        sliceX.RSARatio = ratio[0];
+        sliceZ.RSAMaxIndex = rasdimensions[2] - 1;
+        sliceY.RSAMaxIndex = rasdimensions[1] - 1;
+        sliceX.RSAMaxIndex = rasdimensions[0] - 1;
+        nrrdMeshes = {
+            x: sliceX.mesh,
+            y: sliceY.mesh,
+            z: sliceZ.mesh,
+        };
+        nrrdSlices = {
+            x: sliceX,
+            y: sliceY,
+            z: sliceZ,
+        };
+        const state = {
+            indexX: initIndexX,
+            indexY: initIndexY,
+            indexZ: initIndexZ,
+        };
+        if (gui) {
+            gui
+                .add(state, "indexX", 0, volume.dimensions[0] - 1)
+                .step(1)
+                .name("indexX")
+                .onChange(function (val) {
+                sliceX.index = val * sliceX.RSARatio;
+                sliceX.repaint.call(sliceX);
+            });
+            gui
+                .add(state, "indexY", 0, volume.dimensions[1] - 1)
+                .step(1)
+                .name("indexY")
+                .onChange(function (val) {
+                sliceY.index = val * sliceY.RSARatio;
+                sliceY.repaint.call(sliceY);
+            });
+            gui
+                .add(state, "indexZ", 0, volume.dimensions[2] - 1)
+                .step(1)
+                .name("indexZ")
+                .onChange(function (val) {
+                sliceZ.index = val * sliceZ.RSARatio;
+                sliceZ.repaint.call(sliceZ);
+            });
+            gui
+                .add(volume, "lowerThreshold", volume.min, volume.max, 1)
+                .name("Lower Threshold")
+                .onChange(function () {
+                volume.repaintAllSlices();
+            });
+            gui
+                .add(volume, "upperThreshold", volume.min, volume.max, 1)
+                .name("Upper Threshold")
+                .onChange(function () {
+                volume.repaintAllSlices();
+            });
+            gui
+                .add(volume, "windowLow", volume.min, volume.max, 1)
+                .name("Window Low")
+                .onChange(function () {
+                volume.repaintAllSlices();
+            });
+            gui
+                .add(volume, "windowHigh", volume.min, volume.max, 1)
+                .name("Window High")
+                .onChange(function () {
+                volume.repaintAllSlices();
+            });
+        }
+        if (gui) {
+            callback && callback(volume, nrrdMeshes, nrrdSlices, gui);
+        }
+        else {
+            callback && callback(volume, nrrdMeshes, nrrdSlices);
+        }
+        gui = undefined;
+    }, function (xhr) {
+        loadingContainer.style.display = "flex";
+        progress.innerText = `File: ${name} ${Math.ceil((xhr.loaded / xhr.total) * 100)} % loaded`;
+        if (xhr.loaded / xhr.total === 1) {
+            loadingContainer.style.display = "none";
+        }
+    });
+}
+export function copperNrrdTexture3dLoader(url, scene, container, callback) {
+    // for case 12
+    const volconfig = {
+        clim1_g: 5,
+        clim2_g: 58,
+        clim1: -0.005,
+        clim2: 0.058,
+        renderStyle: "mip",
+        isothreshold_g: 4,
+        isothreshold: 0.004,
+        colormap: "viridis",
+    };
+    let { loadingContainer, progress } = loading();
+    container.appendChild(loadingContainer);
+    let cmtextures;
+    let material;
+    let mesh;
+    let loader;
+    loader = new NRRDLoader();
+    loader.setSegmentation(true);
+    loader.load(url, function (volume) {
+        const is_Int16Array = volume.data.byteLength / volume.data.length === 2;
+        volume.lowerThreshold = 19;
+        volume.upperThreshold = 498;
+        volume.windowLow = 0;
+        volume.windowHigh = 354;
+        let data = is_Int16Array
+            ? int16ToFloat32(volume.data, 0, volume.data.length)
+            : volume.data;
+        const dimTarget = [
+            Math.floor(volume.xLength * volume.spacing[0]),
+            Math.floor(volume.yLength * volume.spacing[1]),
+            Math.ceil(volume.zLength * volume.spacing[2]),
+        ];
+        const scalePixels = resize3dnrrd(data, volume.dimensions, dimTarget);
+        const width = dimTarget[0];
+        const height = dimTarget[1];
+        const depth = dimTarget[2];
+        const texture = new THREE.Data3DTexture(scalePixels, width, height, depth);
+        texture.format = THREE.RedFormat;
+        texture.type = THREE.FloatType;
+        texture.minFilter = texture.magFilter = THREE.LinearFilter;
+        texture.unpackAlignment = 1;
+        texture.needsUpdate = true;
+        // colormap texture
+        cmtextures = {
+            viridis: new THREE.TextureLoader().load(cm_viridis),
+            gray: new THREE.TextureLoader().load(cm_gray),
+        };
+        // Material
+        const shader = VolumeRenderShader1;
+        const uniforms = THREE.UniformsUtils.clone(shader.uniforms);
+        uniforms["u_data"].value = texture;
+        uniforms["u_size"].value.set(width, height, depth);
+        uniforms["u_clim"].value.set(volconfig.clim1, volconfig.clim2);
+        uniforms["u_renderstyle"].value = volconfig.renderStyle === "mip" ? 0 : 1; // mip 0, iso 1
+        uniforms["u_renderthreshold"].value = volconfig.isothreshold; // for iso render style
+        uniforms["u_cmdata"].value = cmtextures[volconfig.colormap];
+        material = new THREE.ShaderMaterial({
+            uniforms: uniforms,
+            vertexShader: shader.vertexShader,
+            fragmentShader: shader.fragmentShader,
+            side: THREE.BackSide, // The volume shader uses the backface as its "reference point"
+        });
+        const geometry = new THREE.BoxGeometry(width, height, depth);
+        geometry.translate(width / 2 - 0.5, height / 2 - 0.5, depth / 2 - 0.5);
+        mesh = new THREE.Mesh(geometry, material);
+        const boxHelper = new THREE.BoxHelper(mesh);
+        // scene.add(boxHelper);
+        boxHelper.applyMatrix4(volume.matrix);
+        const box = new THREE.Box3().setFromObject(mesh);
+        const size = box.getSize(new THREE.Vector3()).length();
+        const center = box.getCenter(new THREE.Vector3());
+        mesh.position.x += mesh.position.x - center.x;
+        mesh.position.y += mesh.position.y - center.y;
+        mesh.position.z += mesh.position.z - center.z;
+        const boundingBox = new THREE.Box3().setFromObject(mesh);
+        // 获取边界框的尺寸
+        const size_ = new THREE.Vector3();
+        boundingBox.getSize(size_);
+        console.log(size_);
+        scene.add(mesh);
+        const gui = new GUI();
+        gui.add(volconfig, "clim1_g", -500, 500, 1).onChange((value) => {
+            volconfig.clim1 = value / 1000;
+            updateUniforms();
+        });
+        gui.add(volconfig, "clim2_g", -500, 500, 1).onChange((value) => {
+            volconfig.clim2 = value / 1000;
+            updateUniforms();
+        });
+        gui
+            .add(volconfig, "colormap", { gray: "gray", viridis: "viridis" })
+            .onChange(updateUniforms);
+        gui
+            .add(volconfig, "renderStyle", { mip: "mip", iso: "iso" })
+            .onChange(updateUniforms);
+        gui.add(volconfig, "isothreshold_g", -1000, 1000, 1).onChange((value) => {
+            volconfig.isothreshold = value / 1000;
+            updateUniforms();
+        });
+        function updateUniforms() {
+            material.uniforms["u_clim"].value.set(volconfig.clim1, volconfig.clim2);
+            material.uniforms["u_renderstyle"].value =
+                volconfig.renderStyle == "mip" ? 0 : 1; // 0: MIP, 1: ISO
+            material.uniforms["u_renderthreshold"].value = volconfig.isothreshold; // For ISO renderstyle
+            material.uniforms["u_cmdata"].value = cmtextures[volconfig.colormap];
+        }
+        callback && callback(volume, gui);
+    }, function (xhr) {
+        loadingContainer.style.display = "flex";
+        progress.innerText = `${Math.ceil((xhr.loaded / xhr.total) * 100)} % loaded`;
+        if (xhr.loaded / xhr.total === 1) {
+            loadingContainer.style.display = "none";
+        }
+    });
+}
+export function getWholeSlices(nrrdSlices, scene, gui, controls) {
+    let i = 0;
+    let timeX = nrrdSlices.x.volume.RASDimensions[0];
+    let timeY = nrrdSlices.y.volume.RASDimensions[1];
+    let timeZ = nrrdSlices.z.volume.RASDimensions[2];
+    let slicesX = [];
+    let sliceGroup = new THREE.Group();
+    // const volume = nrrdSlices.x.volume;
+    // volume.lowerThreshold = 19;
+    // volume.upperThreshold = 498;
+    // volume.windowLow = 0;
+    // volume.windowHigh = 354;
+    // for (let i = 0; i < timeZ; i++) {
+    //   const slicez = volume.extractSlice("z", i);
+    //   slicez.mesh.index = i;
+    //   sliceGroup.add(slicez.mesh);
+    //   slicesX.push(slicez.mesh);
+    // }
+    // for (let i = 0; i < timeX; i++) {
+    //   const slicex = volume.extractSlice("x", i);
+    //   sliceGroup.add(slicex.mesh);
+    // }
+    // for (let i = 0; i < timeY; i++) {
+    //   const slicey = volume.extractSlice("y", i);
+    //   sliceGroup.add(slicey.mesh);
+    // }
+    // scene.add(sliceGroup);
+    scene.add(nrrdSlices.z.mesh);
+    // for (let i = 0; i < timeZ; i++) {
+    //   setTimeout(() => {
+    //     nrrdSlices.z.index = i;
+    //     nrrdSlices.z.repaint(nrrdSlices.z);
+    //     nrrdSlices.z.mesh.position.set(0, 0, 0.5);
+    //     console.log(nrrdSlices.z.mesh);
+    //   }, 100);
+    // }
+    let up = true;
+    function rederZ() {
+        requestAnimationFrame(rederZ);
+        if (i < 0) {
+            i = 0;
+            up = true;
+        }
+        if (i > timeZ) {
+            i = timeZ;
+            up = false;
+        }
+        setTimeout(() => {
+            nrrdSlices.z.index = i;
+            nrrdSlices.z.repaint(nrrdSlices.z);
+            nrrdSlices.z.mesh.position.set(0, 0, 0.5);
+        }, 100);
+        if (up) {
+            i++;
+        }
+        else {
+            i--;
+        }
+    }
+    rederZ();
+    const zz = {
+        indexX: 0,
+    };
+    let a = 0;
+    gui
+        .add(zz, "indexX", 0, 50, 1)
+        .name("indexZ")
+        .onChange((index) => {
+        controls.enabled = false;
+        // if (index < a) {
+        //   a = index;
+        //   slicesX[a].visible = true;
+        // } else if (index >= a) {
+        //   slicesX[a].visible = false;
+        //   a = index;
+        //   slicesX[a].visible = false;
+        // }
+        // if (slicesX[index]) {
+        //   controls.enabled = false;
+        //   console.log(slicesX[index]);
+        //   slicesX[index].visible = false;
+        //   // ? (slicesX[index].visible = false)
+        //   // : (slicesX[index].visible = true);
+        // }
+    });
+    gui.add(controls, "enabled").name("controls");
+}
+export function addBoxHelper(scene, volume, boxCube) {
+    let obj;
+    boxCube ? (obj = boxCube) : (obj = cube);
+    const boxHelper = new THREE.BoxHelper(obj);
+    scene.addObject(boxHelper);
+    boxHelper.applyMatrix4(volume.matrix);
+}
+function configGui(opts) {
+    if (opts && opts.openGui) {
+        if (opts.container) {
+            if (oldGuiDom) {
+                oldGuiDom.remove();
+                // opts.container.removeChild(oldGuiDom);
+            }
+            gui = new GUI({
+                width: 260,
+                autoPlace: false,
+            });
+            oldGuiDom = gui.domElement;
+            opts.container.appendChild(gui.domElement);
+        }
+        else {
+            gui = new GUI();
+            gui.closed = true;
+        }
+    }
+}
+function int16ToFloat32(inputArray, startIndex, length) {
+    var output = new Float32Array(inputArray.length - startIndex);
+    for (var i = startIndex; i < length; i++) {
+        var int = inputArray[i];
+        // If the high bit is on, then it is a negative number, and actually counts backwards.
+        var float = int >= 0x8000 ? -(0x10000 - int) / 0x8000 : int / 0x7fff;
+        output[i] = float;
+    }
+    return output;
+}
+/**
+ *
+ * @param {number} r - Radius
+ * @param {string} color - e.g., 0xffffff
+ * @returns {object} - A Circle mesh
+ */
+function createCircle(r, color) {
+    const geometry = new THREE.CircleGeometry(r * 1.6, 30);
+    const material = new THREE.MeshBasicMaterial({
+        color: color,
+        transparent: true,
+        side: THREE.DoubleSide,
+    });
+    return new THREE.Mesh(geometry, material);
+}
+/**
+ *
+ * @param {string} color  - e.g., 0xffffff
+ * @returns {object} - A ring circle mesh
+ */
+function createRingCircle(color) {
+    CircleMaterial.color = new THREE.Color(color);
+    return new THREE.Mesh(CircleGeometry, CircleMaterial);
+}
+function createDecalMesh(map, normalMap, mesh, position, orientation, size, opt) {
+    const decalMaterial = new THREE.MeshPhongMaterial({
+        specular: 0x444444,
+        map,
+        normalScale: new THREE.Vector2(1, 1),
+        shininess: 30,
+        transparent: true,
+        depthTest: true,
+        depthWrite: false,
+        polygonOffset: true,
+        polygonOffsetFactor: -4,
+        wireframe: false,
+    });
+    if (!!normalMap)
+        decalMaterial.normalMap = normalMap;
+    const material = decalMaterial.clone();
+    if (opt === null || opt === void 0 ? void 0 : opt.randomColor) {
+        material.color.setHex(Math.random() * 0xffffff);
+    }
+    else if (opt === null || opt === void 0 ? void 0 : opt.color) {
+        material.color.setHex(opt.color);
+    }
+    else {
+        material.color.setHex(0xff00ff);
+    }
+    const m = new THREE.Mesh(new DecalGeometry(mesh, position, orientation, size), material);
+    return m;
+}
+//# sourceMappingURL=copperNrrdLoader.js.map

package/dist/Loader/copperNrrdLoader.js.map

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package/dist/Loader/copperOBJLoader.d.ts

@@ -0,0 +1,3 @@
+import { OBJLoader } from "three/examples/jsm/loaders/OBJLoader";
+declare const objLoader: OBJLoader;
+export { objLoader };

package/dist/Loader/copperOBJLoader.js

@@ -0,0 +1,4 @@
+import { OBJLoader } from "three/examples/jsm/loaders/OBJLoader";
+const objLoader = new OBJLoader();
+export { objLoader };
+//# sourceMappingURL=copperOBJLoader.js.map

package/dist/Loader/copperOBJLoader.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"copperOBJLoader.js","sourceRoot":"","sources":["../../src/Loader/copperOBJLoader.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,sCAAsC,CAAC;AAEjE,MAAM,SAAS,GAAG,IAAI,SAAS,EAAE,CAAC;AAElC,OAAO,EAAE,SAAS,EAAE,CAAC"}

package/dist/Loader/copperVtkLoader.d.ts

@@ -0,0 +1,8 @@
+import { VTKLoader } from "three/examples/jsm/loaders/VTKLoader.js";
+import * as THREE from "three";
+import { IOptVTKLoader } from "../types/types";
+export declare function copperVtkLoader(url: string, scene: THREE.Scene, content: THREE.Group, opts?: IOptVTKLoader): void;
+export declare function copperMultipleVtk(opts?: IOptVTKLoader): {
+    vtkLoader: VTKLoader;
+    vtkmaterial: THREE.MeshStandardMaterial;
+};

package/dist/Loader/copperVtkLoader.js

@@ -0,0 +1,44 @@
+import { VTKLoader } from "three/examples/jsm/loaders/VTKLoader.js";
+import * as THREE from "three";
+const vtkLoader = new VTKLoader();
+const materialConfig = {
+    wireframe: false,
+    side: THREE.DoubleSide,
+    color: 0xfff000,
+};
+export function copperVtkLoader(url, scene, content, opts) {
+    vtkLoader.load(url, function (geometry) {
+        geometry.center();
+        geometry.computeVertexNormals();
+        const vtkmaterial = new THREE.MeshStandardMaterial(materialConfig);
+        if (opts) {
+            configOpts(vtkmaterial, opts);
+        }
+        const mesh = new THREE.Mesh(geometry, vtkmaterial);
+        mesh.scale.multiplyScalar(0.1);
+        content.add(mesh);
+        scene.add(content);
+    });
+}
+export function copperMultipleVtk(opts) {
+    const vtkmaterial = new THREE.MeshStandardMaterial(materialConfig);
+    if (opts) {
+        configOpts(vtkmaterial, opts);
+    }
+    return { vtkLoader, vtkmaterial };
+}
+function configOpts(vtkmaterial, opts) {
+    if (opts.wireframe) {
+        vtkmaterial.wireframe = opts.wireframe;
+    }
+    if (opts.color) {
+        vtkmaterial.color.set(opts.color);
+    }
+    if (opts.transparent) {
+        vtkmaterial.transparent = opts.transparent;
+    }
+    if (opts.opacity) {
+        vtkmaterial.opacity = opts.opacity;
+    }
+}
+//# sourceMappingURL=copperVtkLoader.js.map

package/dist/Loader/copperVtkLoader.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"copperVtkLoader.js","sourceRoot":"","sources":["../../src/Loader/copperVtkLoader.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AACpE,OAAO,KAAK,KAAK,MAAM,OAAO,CAAC;AAG/B,MAAM,SAAS,GAAG,IAAI,SAAS,EAAE,CAAC;AAElC,MAAM,cAAc,GAAG;IACrB,SAAS,EAAE,KAAK;IAChB,IAAI,EAAE,KAAK,CAAC,UAAU;IACtB,KAAK,EAAE,QAAQ;CAChB,CAAC;AAEF,MAAM,UAAU,eAAe,CAC7B,GAAW,EACX,KAAkB,EAClB,OAAoB,EACpB,IAAoB;IAEpB,SAAS,CAAC,IAAI,CAAC,GAAG,EAAE,UAAU,QAAQ;QACpC,QAAQ,CAAC,MAAM,EAAE,CAAC;QAClB,QAAQ,CAAC,oBAAoB,EAAE,CAAC;QAChC,MAAM,WAAW,GAAG,IAAI,KAAK,CAAC,oBAAoB,CAAC,cAAc,CAAC,CAAC;QACnE,IAAI,IAAI,EAAE;YACR,UAAU,CAAC,WAAW,EAAE,IAAI,CAAC,CAAC;SAC/B;QAED,MAAM,IAAI,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,QAAQ,EAAE,WAAW,CAAC,CAAC;QACnD,IAAI,CAAC,KAAK,CAAC,cAAc,CAAC,GAAG,CAAC,CAAC;QAE/B,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;QAClB,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IACrB,CAAC,CAAC,CAAC;AACL,CAAC;AAED,MAAM,UAAU,iBAAiB,CAAC,IAAoB;IACpD,MAAM,WAAW,GAAG,IAAI,KAAK,CAAC,oBAAoB,CAAC,cAAc,CAAC,CAAC;IACnE,IAAI,IAAI,EAAE;QACR,UAAU,CAAC,WAAW,EAAE,IAAI,CAAC,CAAC;KAC/B;IACD,OAAO,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC;AACpC,CAAC;AAED,SAAS,UAAU,CACjB,WAAuC,EACvC,IAAmB;IAEnB,IAAI,IAAI,CAAC,SAAS,EAAE;QAClB,WAAW,CAAC,SAAS,GAAG,IAAI,CAAC,SAAS,CAAC;KACxC;IACD,IAAI,IAAI,CAAC,KAAK,EAAE;QACd,WAAW,CAAC,KAAK,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;KACnC;IACD,IAAI,IAAI,CAAC,WAAW,EAAE;QACpB,WAAW,CAAC,WAAW,GAAG,IAAI,CAAC,WAAW,CAAC;KAC5C;IACD,IAAI,IAAI,CAAC,OAAO,EAAE;QAChB,WAAW,CAAC,OAAO,GAAG,IAAI,CAAC,OAAO,CAAC;KACpC;AACH,CAAC"}

package/dist/Renderer/baseRenderer.d.ts

@@ -0,0 +1,30 @@
+/// <reference types="stats.js" />
+import * as THREE from "three";
+import baseScene from "../Scene/baseScene";
+import { customMeshType } from "../lib/three-vignette";
+import Stats from "three/examples/jsm/libs/stats.module";
+import { GUI } from "dat.gui";
+import { optType } from "../types/types";
+export default class baseRenderer {
+    container: HTMLDivElement;
+    renderer: THREE.WebGLRenderer;
+    gui: GUI | null;
+    stats: Stats;
+    currentScene: baseScene;
+    pmremGenerator: THREE.PMREMGenerator;
+    options: optType | undefined;
+    private state;
+    private visualiseFolder;
+    private visualCtrls;
+    private cameraFolder;
+    constructor(container: HTMLDivElement, options?: optType);
+    init(): void;
+    updateEnvironment(vignette?: customMeshType): void;
+    private getCubeMapTexture;
+    getCurrentScene(): baseScene;
+    hideGui(): void;
+    closeGui(): void;
+    setClearColor(clearColor?: number, alpha?: number): void;
+    addGui(): void;
+    updateGui(): void;
+}