codegraph-java 0.1.0

package/dist/installer/targets/codex.js

@@ -0,0 +1,202 @@
+"use strict";
+/**
+ * OpenAI Codex CLI target.
+ *
+ *   - MCP server entry to `config.toml` as the dotted-key table
+ *     `[mcp_servers.codegraph]`. TOML — not JSON — handled by the
+ *     narrow serializer in `./toml.ts`.
+ *   - Instructions to `AGENTS.md`.
+ *
+ * Both locations are supported (#1531):
+ *   - global: `~/.codex/config.toml` + `~/.codex/AGENTS.md`
+ *   - local:  `<cwd>/.codex/config.toml` + `<cwd>/AGENTS.md`
+ *
+ * Codex has a first-class project config layer: `.codex/config.toml`
+ * is layer 4 of the loader's stack, above the user config (layer 6),
+ * merged recursively top-over-bottom
+ * (`codex-rs/config/src/loader/README.md` in openai/codex). It landed
+ * in openai/codex#8354 (2025-12-22), so the "Codex has no
+ * project-local config" note this file used to carry was never
+ * accurate. The project layer strips a denylist of settings that
+ * repo contents shouldn't get to choose (base URLs, model providers,
+ * `notify`, profiles, otel — `loader/mod.rs`), and `mcp_servers` is
+ * NOT on it, so a project-scoped `[mcp_servers.codegraph]` is honored.
+ *
+ * Caveat surfaced as an install note: project layers are "loaded but
+ * disabled when untrusted," so a local install only takes effect in a
+ * project the user has marked trusted.
+ *
+ * No permissions concept.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.codexTarget = void 0;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const os = __importStar(require("os"));
+const shared_1 = require("./shared");
+const instructions_template_1 = require("../instructions-template");
+const toml_1 = require("./toml");
+const TOML_HEADER = 'mcp_servers.codegraph';
+function configDir(loc) {
+    return loc === 'global'
+        ? path.join(os.homedir(), '.codex')
+        : path.join(process.cwd(), '.codex');
+}
+function tomlConfigPath(loc) {
+    return path.join(configDir(loc), 'config.toml');
+}
+function instructionsPath(loc) {
+    // Global AGENTS.md lives under ~/.codex/; project-local AGENTS.md
+    // lives at the project root (NOT under .codex/) — that's the file
+    // Codex reads for repo instructions, and it matches the local
+    // layout the opencode and gemini targets already use.
+    return loc === 'global'
+        ? path.join(configDir('global'), 'AGENTS.md')
+        : path.join(process.cwd(), 'AGENTS.md');
+}
+/**
+ * Project layers are "loaded but disabled when untrusted" (openai/codex
+ * `loader/mod.rs`), so a local install can be written correctly and
+ * still do nothing. Say so rather than reporting silent success.
+ */
+function trustNote() {
+    return `Codex applies ${tomlConfigPath('local')} only in a project marked trusted — otherwise the layer is loaded but disabled. Trust this project in Codex to activate it.`;
+}
+class CodexTarget {
+    id = 'codex';
+    displayName = 'Codex CLI';
+    docsUrl = 'https://github.com/openai/codex';
+    supportsLocation(_loc) {
+        return true;
+    }
+    detect(loc) {
+        const tomlPath = tomlConfigPath(loc);
+        let alreadyConfigured = false;
+        if (fs.existsSync(tomlPath)) {
+            try {
+                const content = fs.readFileSync(tomlPath, 'utf-8');
+                alreadyConfigured = content.includes(`[${TOML_HEADER}]`);
+            }
+            catch { /* ignore */ }
+        }
+        // Global: ~/.codex/ existing means Codex has run here. Local: the
+        // project only counts as "Codex-enabled" once it actually has a
+        // .codex/ dir or config file of its own.
+        const installed = fs.existsSync(configDir(loc)) || fs.existsSync(tomlPath);
+        return { installed, alreadyConfigured, configPath: tomlPath };
+    }
+    install(loc, _opts) {
+        const files = [];
+        files.push(writeMcpEntry(loc));
+        // AGENTS.md gets the short marker-fenced CodeGraph block (#704):
+        // subagents and non-MCP harnesses read AGENTS.md but never the MCP
+        // initialize instructions. Upsert self-heals a stale pre-#529 block.
+        files.push((0, shared_1.upsertInstructionsEntry)(instructionsPath(loc)));
+        return loc === 'local' ? { files, notes: [trustNote()] } : { files };
+    }
+    uninstall(loc) {
+        const files = [];
+        const tomlPath = tomlConfigPath(loc);
+        if (fs.existsSync(tomlPath)) {
+            const content = fs.readFileSync(tomlPath, 'utf-8');
+            const { content: nextContent, action } = (0, toml_1.removeTomlTable)(content, TOML_HEADER);
+            if (action === 'removed') {
+                if (nextContent.trim() === '') {
+                    try {
+                        fs.unlinkSync(tomlPath);
+                    }
+                    catch { /* ignore */ }
+                }
+                else {
+                    (0, shared_1.atomicWriteFileSync)(tomlPath, nextContent.trimEnd() + '\n');
+                }
+                files.push({ path: tomlPath, action: 'removed' });
+            }
+            else {
+                files.push({ path: tomlPath, action: 'not-found' });
+            }
+        }
+        else {
+            files.push({ path: tomlPath, action: 'not-found' });
+        }
+        files.push(removeInstructionsEntry(loc));
+        return { files };
+    }
+    printConfig(loc) {
+        const block = buildCodegraphBlock();
+        return `# Add to ${tomlConfigPath(loc)}\n\n${block}\n`;
+    }
+    describePaths(loc) {
+        return [tomlConfigPath(loc), instructionsPath(loc)];
+    }
+}
+function buildCodegraphBlock() {
+    const mcp = (0, shared_1.getMcpServerConfig)();
+    return (0, toml_1.buildTomlTable)(TOML_HEADER, {
+        command: mcp.command,
+        args: mcp.args,
+    });
+}
+function writeMcpEntry(loc) {
+    const file = tomlConfigPath(loc);
+    const dir = path.dirname(file);
+    if (!fs.existsSync(dir))
+        fs.mkdirSync(dir, { recursive: true });
+    const block = buildCodegraphBlock();
+    // Single read — `existing === ''` derives both "is the file empty
+    // or absent" and "what was its content," avoiding a TOCTOU window
+    // between two `fs.existsSync` calls.
+    const existing = fs.existsSync(file) ? fs.readFileSync(file, 'utf-8') : '';
+    const created = existing.length === 0;
+    const { content: nextContent, action } = (0, toml_1.upsertTomlTable)(existing, TOML_HEADER, block);
+    if (action === 'unchanged') {
+        return { path: file, action: 'unchanged' };
+    }
+    (0, shared_1.atomicWriteFileSync)(file, nextContent);
+    return { path: file, action: created ? 'created' : 'updated' };
+}
+/**
+ * Strip the marker-delimited CodeGraph block from this location's
+ * AGENTS.md if a prior install wrote one. Used by both install
+ * (self-heal on upgrade) and uninstall — see issue #529.
+ */
+function removeInstructionsEntry(loc) {
+    const file = instructionsPath(loc);
+    const action = (0, shared_1.removeMarkedSection)(file, instructions_template_1.CODEGRAPH_SECTION_START, instructions_template_1.CODEGRAPH_SECTION_END);
+    return { path: file, action };
+}
+exports.codexTarget = new CodexTarget();
+//# sourceMappingURL=codex.js.map

package/dist/installer/targets/codex.js.map

@@ -0,0 +1 @@
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package/dist/installer/targets/copilot-cli.d.ts

@@ -0,0 +1,32 @@
+/**
+ * GitHub Copilot CLI target.
+ *
+ *   - MCP server entry to `~/.copilot/mcp-config.json` under the
+ *     `mcpServers` key (same wrapper as Claude/Cursor). Entry shape per
+ *     the GitHub docs: `{ "type": "stdio", "command", "args", "tools" }`
+ *     — `type` accepts `"local"` or `"stdio"`; we write `"stdio"` (the
+ *     standard MCP name, recommended by the docs for cross-client
+ *     compatibility). `"tools": ["*"]` mirrors the docs' example and is
+ *     the documented default.
+ *   - The config dir is `~/.copilot` unless the user moved it via
+ *     `COPILOT_HOME` (documented override) — we honor it so install and
+ *     detect follow the CLI's own resolution.
+ *
+ * Copilot CLI as of 2026-07 has no project-local MCP config — per-repo
+ * config (`.github/mcp.json`) is an open feature request
+ * (github/copilot-cli#2528). `supportsLocation('local')` returns false;
+ * the orchestrator skips this target for local installs with a clear
+ * message (same pattern as Codex).
+ *
+ * The file is machine-written by the CLI's own `/mcp add` flow, so it's
+ * plain JSON — no JSONC handling needed; surgical edits go through the
+ * shared read/mutate/write helpers (Cursor pattern), preserving sibling
+ * servers.
+ *
+ * No instructions file (MCP `initialize` instructions are the single
+ * source of truth, #529) and no permissions concept — `autoAllow` is
+ * silently ignored.
+ */
+import { AgentTarget } from './types';
+export declare const copilotCliTarget: AgentTarget;
+//# sourceMappingURL=copilot-cli.d.ts.map

package/dist/installer/targets/copilot-cli.d.ts.map

@@ -0,0 +1 @@
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package/dist/installer/targets/copilot-cli.js

@@ -0,0 +1,209 @@
+"use strict";
+/**
+ * GitHub Copilot CLI target.
+ *
+ *   - MCP server entry to `~/.copilot/mcp-config.json` under the
+ *     `mcpServers` key (same wrapper as Claude/Cursor). Entry shape per
+ *     the GitHub docs: `{ "type": "stdio", "command", "args", "tools" }`
+ *     — `type` accepts `"local"` or `"stdio"`; we write `"stdio"` (the
+ *     standard MCP name, recommended by the docs for cross-client
+ *     compatibility). `"tools": ["*"]` mirrors the docs' example and is
+ *     the documented default.
+ *   - The config dir is `~/.copilot` unless the user moved it via
+ *     `COPILOT_HOME` (documented override) — we honor it so install and
+ *     detect follow the CLI's own resolution.
+ *
+ * Copilot CLI as of 2026-07 has no project-local MCP config — per-repo
+ * config (`.github/mcp.json`) is an open feature request
+ * (github/copilot-cli#2528). `supportsLocation('local')` returns false;
+ * the orchestrator skips this target for local installs with a clear
+ * message (same pattern as Codex).
+ *
+ * The file is machine-written by the CLI's own `/mcp add` flow, so it's
+ * plain JSON — no JSONC handling needed; surgical edits go through the
+ * shared read/mutate/write helpers (Cursor pattern), preserving sibling
+ * servers.
+ *
+ * No instructions file (MCP `initialize` instructions are the single
+ * source of truth, #529) and no permissions concept — `autoAllow` is
+ * silently ignored.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.copilotCliTarget = void 0;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const os = __importStar(require("os"));
+const shared_1 = require("./shared");
+function configDir() {
+    const override = process.env.COPILOT_HOME;
+    if (override && override.trim().length > 0)
+        return override;
+    return path.join(os.homedir(), '.copilot');
+}
+function mcpConfigPath() {
+    return path.join(configDir(), 'mcp-config.json');
+}
+/**
+ * `~/.copilot` existing is NOT proof the CLI is installed: the VS Code
+ * Copilot Chat extension drops MCP socket-handoff lock files into
+ * `~/.copilot/ide/` on launch, so a machine with only the VS Code
+ * extension still has the dir (with a lone `ide` entry). Count the dir
+ * as a CLI footprint only when it holds anything besides `ide` — the
+ * CLI writes `config.json` (and later `mcp-config.json`, history state)
+ * on first run.
+ */
+function cliConfigDirPresent() {
+    let entries;
+    try {
+        entries = fs.readdirSync(configDir());
+    }
+    catch {
+        return false;
+    }
+    return entries.some((e) => e !== 'ide');
+}
+/**
+ * Best-effort check that the `copilot` binary is reachable on PATH.
+ * A plain fs scan (no shell-out) — cheap enough to run inside
+ * `detectAll()` for the multiselect prompt.
+ */
+function copilotOnPath() {
+    const pathVar = process.env.PATH || '';
+    const exts = process.platform === 'win32'
+        ? ['.exe', '.cmd', '.bat', '.ps1']
+        : [''];
+    for (const dir of pathVar.split(path.delimiter)) {
+        if (!dir)
+            continue;
+        for (const ext of exts) {
+            try {
+                if (fs.existsSync(path.join(dir, 'copilot' + ext)))
+                    return true;
+            }
+            catch { /* ignore unreadable PATH entries */ }
+        }
+    }
+    return false;
+}
+function buildCopilotMcpConfig() {
+    const base = (0, shared_1.getMcpServerConfig)();
+    return { ...base, tools: ['*'] };
+}
+class CopilotCliTarget {
+    id = 'copilot-cli';
+    displayName = 'GitHub Copilot CLI';
+    docsUrl = 'https://docs.github.com/en/copilot/how-tos/copilot-cli/customize-copilot/add-mcp-servers';
+    supportsLocation(loc) {
+        return loc === 'global';
+    }
+    detect(loc) {
+        if (loc !== 'global') {
+            return { installed: false, alreadyConfigured: false };
+        }
+        const file = mcpConfigPath();
+        const config = (0, shared_1.readJsonFile)(file);
+        const alreadyConfigured = !!config.mcpServers?.codegraph;
+        const installed = cliConfigDirPresent() || copilotOnPath();
+        return { installed, alreadyConfigured, configPath: file };
+    }
+    install(loc, _opts) {
+        if (loc !== 'global') {
+            return {
+                files: [],
+                notes: ['Copilot CLI has no project-local config — re-run with --location=global to install.'],
+            };
+        }
+        return {
+            files: [writeMcpEntry()],
+            notes: ['Restart any running Copilot CLI session to pick up the MCP server.'],
+        };
+    }
+    uninstall(loc) {
+        if (loc !== 'global')
+            return { files: [] };
+        const file = mcpConfigPath();
+        if (!fs.existsSync(file)) {
+            return { files: [{ path: file, action: 'not-found' }] };
+        }
+        const config = (0, shared_1.readJsonFile)(file);
+        if (!config.mcpServers?.codegraph) {
+            return { files: [{ path: file, action: 'not-found' }] };
+        }
+        delete config.mcpServers.codegraph;
+        if (Object.keys(config.mcpServers).length === 0) {
+            delete config.mcpServers;
+        }
+        if (Object.keys(config).length === 0) {
+            // Nothing left but the `{}` we'd write back — delete the file so
+            // uninstall fully reverses a from-scratch install. A leftover
+            // empty file would keep detect() reporting the CLI as installed.
+            fs.unlinkSync(file);
+        }
+        else {
+            (0, shared_1.writeJsonFile)(file, config);
+        }
+        return { files: [{ path: file, action: 'removed' }] };
+    }
+    printConfig(loc) {
+        if (loc !== 'global') {
+            return '# Copilot CLI has no project-local config — use --location=global.\n';
+        }
+        const snippet = JSON.stringify({ mcpServers: { codegraph: buildCopilotMcpConfig() } }, null, 2);
+        return `# Add to ${mcpConfigPath()}\n\n${snippet}\n`;
+    }
+    describePaths(loc) {
+        if (loc !== 'global')
+            return [];
+        return [mcpConfigPath()];
+    }
+}
+function writeMcpEntry() {
+    const file = mcpConfigPath();
+    const existing = (0, shared_1.readJsonFile)(file);
+    const before = existing.mcpServers?.codegraph;
+    const after = buildCopilotMcpConfig();
+    if ((0, shared_1.jsonDeepEqual)(before, after)) {
+        return { path: file, action: 'unchanged' };
+    }
+    const existed = fs.existsSync(file);
+    if (!existing.mcpServers)
+        existing.mcpServers = {};
+    existing.mcpServers.codegraph = after;
+    (0, shared_1.writeJsonFile)(file, existing);
+    return { path: file, action: existed ? 'updated' : 'created' };
+}
+exports.copilotCliTarget = new CopilotCliTarget();
+//# sourceMappingURL=copilot-cli.js.map

package/dist/installer/targets/copilot-cli.js.map

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package/dist/installer/targets/copilot-jetbrains.d.ts

@@ -0,0 +1,42 @@
+/**
+ * JetBrains IDEs (GitHub Copilot plugin) target.
+ *
+ *   - MCP server entry to the plugin's user-level `mcp.json`, which
+ *     lives under the shared `github-copilot` config dir (the same dir
+ *     the Copilot ecosystem uses for `hosts.json`):
+ *
+ *       macOS/Linux: $XDG_CONFIG_HOME|~/.config/github-copilot/intellij/mcp.json
+ *       Windows:     %LOCALAPPDATA%\github-copilot\intellij\mcp.json
+ *
+ *     `$XDG_CONFIG_HOME` is honored on every platform when set —
+ *     matching the plugin family's own resolution (copilot.vim /
+ *     copilot-language-server check it before the OS default).
+ *   - Shape is VS Code-compatible: `{ "servers": { "<name>": { "type":
+ *     "stdio", "command", "args" } } }` — the plugin documents mcp.json
+ *     parity with `.vscode/mcp.json`.
+ *   - **Global-only.** The plugin reads exactly one user-level file; a
+ *     project-level mcp.json is an open feature request
+ *     (microsoft/copilot-intellij-feedback#701, still open 2026-07).
+ *     `supportsLocation('local')` returns false so the orchestrator
+ *     skips local installs with a clear message (Codex pattern).
+ *   - No `--path` injection: the config is user-global and the plugin
+ *     documents no `${workspaceFolder}`-style variable expansion for
+ *     this file, so we ship the plain entry and let the MCP server
+ *     resolve the project from the client's roots/cwd as with other
+ *     global installs.
+ *   - No instructions file (MCP `initialize` instructions are the
+ *     single source of truth, #529) and no permissions concept —
+ *     `autoAllow` is silently ignored.
+ *
+ * The IDE opens this file in a JSON editor for hand-editing (Settings →
+ * Tools → GitHub Copilot → MCP → Configure), so reads + writes go
+ * through `jsonc-parser` — surgical edits that preserve sibling
+ * servers, user comments, and formatting (same approach as the
+ * copilot-vscode target).
+ *
+ * The plugin only re-reads mcp.json on IDE restart
+ * (microsoft/copilot-intellij-feedback#1139) — hence the restart note.
+ */
+import { AgentTarget } from './types';
+export declare const copilotJetbrainsTarget: AgentTarget;
+//# sourceMappingURL=copilot-jetbrains.d.ts.map

package/dist/installer/targets/copilot-jetbrains.d.ts.map

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