codegraph-java 0.1.0

package/dist/extraction/index.d.ts

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+/**
+ * Extraction Orchestrator
+ *
+ * Coordinates file scanning, parsing, and database storage.
+ */
+import * as fs from 'fs';
+import { ExtractionResult, ExtractionError } from '../types';
+import { QueryBuilder } from '../db/queries';
+import { Ignore } from 'ignore';
+/**
+ * Progress callback for indexing operations
+ */
+export interface IndexProgress {
+    phase: 'scanning' | 'parsing' | 'storing' | 'resolving' | 'linking';
+    current: number;
+    total: number;
+    currentFile?: string;
+}
+/**
+ * Result of an indexing operation
+ */
+export interface IndexResult {
+    success: boolean;
+    filesIndexed: number;
+    filesSkipped: number;
+    filesErrored: number;
+    /**
+     * How many indexable files the scan discovered — the ground truth the
+     * indexed/skipped/errored tallies must add up to. A shortfall means files
+     * were silently dropped mid-pipeline (e.g. a killed worker under load) and
+     * the index is PARTIAL; callers surface that rather than trusting the
+     * counts. Only set by full-index runs (indexAll), not indexFiles/sync.
+     */
+    filesDiscovered?: number;
+    nodesCreated: number;
+    edgesCreated: number;
+    errors: ExtractionError[];
+    durationMs: number;
+}
+/**
+ * Result of a sync operation
+ */
+export interface SyncResult {
+    filesChecked: number;
+    filesAdded: number;
+    filesModified: number;
+    filesRemoved: number;
+    nodesUpdated: number;
+    durationMs: number;
+    changedFilePaths?: string[];
+    /**
+     * Symbol names whose set of definitions this sync CHANGED — names the synced
+     * files gained or lost, as the symmetric difference of their `file\0name`
+     * definition pairs before and after the store phase (per file, so a name
+     * moving between two changed files does not cancel itself out).
+     * Resolution picks among all same-named definitions project-wide,
+     * so these are exactly the names whose already-resolved edges — in files this
+     * sync never touched — may now bind elsewhere and must be re-resolved for the
+     * index to stay convergent with a full rebuild (CG-33).
+     *
+     * A body-only edit leaves this empty, which is the common case and costs
+     * nothing downstream.
+     */
+    definitionDelta?: string[];
+}
+/**
+ * Calculate SHA256 hash of file contents
+ */
+export declare function hashContent(content: string): string;
+/**
+ * An `ignore` matcher seeded with the built-in defaults, merged with the project's
+ * root .gitignore so a negation there (e.g. `!vendor/`) overrides a default. Shared
+ * by both enumeration paths so behavior is identical with or without git — and so
+ * the defaults apply to tracked files too (committing a dependency dir doesn't make
+ * it project code; the explicit `.gitignore` negation is the only opt-in).
+ */
+export declare function buildDefaultIgnore(rootDir: string): Ignore;
+/**
+ * Workspace-scope ignore matcher. Ordinary paths get the root's matcher
+ * (built-in defaults + root `.gitignore`); paths inside an EMBEDDED repo get
+ * that repo's own matcher (defaults + its root `.gitignore`) — the parent's
+ * `.gitignore` hides a child repo from git, not from the index (#514). A
+ * directory path (trailing slash) that is an ANCESTOR of an embedded root is
+ * never ignored, so directory-pruning callers (the Linux per-directory
+ * watcher) still descend to reach the embedded repos.
+ *
+ * Single source of truth for indexer and watcher scope — they must not diverge.
+ */
+export declare class ScopeIgnore {
+    private rootMatcher;
+    /**
+     * Project `codegraph.json` `exclude` patterns (#999), matched against the
+     * full root-relative path. Wins over everything else — an explicit user
+     * exclude applies even to tracked files and even inside embedded repos.
+     */
+    private exclude;
+    /**
+     * Project `codegraph.json` `include` patterns — first-party source forced
+     * INTO the index despite `.gitignore`. When a path matches, it is NOT
+     * ignored (so the watcher watches it), overriding `.gitignore`/`rootMatcher`
+     * — but never `exclude` (checked first) and never a built-in default-ignored
+     * dir. `includeRoots` are the static prefixes so a gitignored ANCESTOR
+     * directory of an included subtree still isn't pruned by the directory
+     * walker/watcher.
+     */
+    private include;
+    private includeRoots;
+    private embedded;
+    private defaults;
+    constructor(rootMatcher: Ignore, embedded: Array<{
+        root: string;
+        matcher: Ignore;
+    }>, 
+    /**
+     * Project `codegraph.json` `exclude` patterns (#999), matched against the
+     * full root-relative path. Wins over everything else — an explicit user
+     * exclude applies even to tracked files and even inside embedded repos.
+     */
+    exclude?: Ignore | null, 
+    /**
+     * Project `codegraph.json` `include` patterns — first-party source forced
+     * INTO the index despite `.gitignore`. When a path matches, it is NOT
+     * ignored (so the watcher watches it), overriding `.gitignore`/`rootMatcher`
+     * — but never `exclude` (checked first) and never a built-in default-ignored
+     * dir. `includeRoots` are the static prefixes so a gitignored ANCESTOR
+     * directory of an included subtree still isn't pruned by the directory
+     * walker/watcher.
+     */
+    include?: Ignore | null, includeRoots?: string[]);
+    ignores(rel: string): boolean;
+}
+/**
+ * Build the workspace-scope matcher. When the caller already knows the
+ * embedded roots (the scanner discovers them during collection), pass them to
+ * skip rediscovery; otherwise they're discovered here (the watcher path).
+ */
+export declare function buildScopeIgnore(rootDir: string, embeddedRoots?: Iterable<string>): ScopeIgnore;
+/**
+ * Standalone discovery of every embedded repo root under `rootDir` (relative,
+ * trailing-slashed) — the untracked kind (#193) always, and the gitignored kind
+ * (#514) only for directories the project opted in via `codegraph.json`
+ * `includeIgnored` (#622, #699); otherwise `.gitignore` is respected and they
+ * are not discovered (#970, #976). Recursive (an embedded repo can embed further
+ * repos). Returns [] for non-git roots: the filesystem walk handles nested repos
+ * there already.
+ */
+export declare function discoverEmbeddedRepoRoots(rootDir: string): string[];
+/**
+ * The INVERSE of the gitignored side of {@link discoverEmbeddedRepoRoots}:
+ * nested git repositories under a gitignored directory that the project has NOT
+ * opted into via `codegraph.json` `includeIgnored`. These are real repos the
+ * default `index`/`build` deliberately skips because `.gitignore` excludes them
+ * (#970, #976) — most visibly the "super-repo `.gitignore`s its child repos"
+ * layout (#1156), where `init`+`build` at the parent correctly indexes ~nothing
+ * while `init`+`build` inside each child works. The CLI uses this to turn that
+ * silent empty index into an actionable hint: it names the skipped repos and
+ * offers to opt them in. Paths are `rootDir`-relative and trailing-slashed (valid
+ * `includeIgnored` patterns as-is). Returns `[]` for a non-git root (a
+ * filesystem walk already descends into nested repos there), skips built-in
+ * default-ignored dirs (`node_modules`, …), and is bounded so it never stalls
+ * on a giant ignored tree.
+ */
+export declare function findUnindexedIgnoredRepos(rootDir: string): string[];
+/**
+ * Result of git-based change detection.
+ * Returns null when git is unavailable (non-git project or command failure),
+ * signaling the caller to fall back to full filesystem scan.
+ */
+interface GitChanges {
+    modified: string[];
+    added: string[];
+    deleted: string[];
+}
+/**
+ * Use `git status` to detect changed files instead of scanning every file.
+ * Returns null on failure so callers fall back to full scan.
+ *
+ * Recurses into embedded repos — the untracked kind (#193: the parent's status
+ * collapses them to an opaque `?? subdir/` entry) always, and the gitignored
+ * kind (#514: they never appear in the parent's status at all) only for
+ * directories opted in via `codegraph.json` `includeIgnored` (#622, #699) —
+ * running `git status` inside each, so changes in a multi-repo workspace sync
+ * without a full rescan. By default a gitignored dir is left alone, matching the
+ * full-index scan (#970, #976). Deleting an ENTIRE embedded repo dir is the one
+ * case this cannot see (the child status that would report the deletions is gone
+ * with it); a full `cg index` reconciles that.
+ */
+export declare function getGitChangedFiles(rootDir: string): GitChanges | null;
+/**
+ * Recursively scan a directory for source files.
+ *
+ * In git repos, uses `git ls-files` (inherently respects .gitignore at all
+ * levels), then keeps files with a supported source extension. For non-git
+ * projects, falls back to a filesystem walk that parses .gitignore itself.
+ */
+export declare function scanDirectory(rootDir: string, onProgress?: (current: number, file: string) => void): string[];
+/**
+ * Async variant of scanDirectory that yields to the event loop periodically,
+ * allowing worker threads to receive and render progress messages.
+ */
+export declare function scanDirectoryAsync(rootDir: string, onProgress?: (current: number, file: string) => void): Promise<string[]>;
+/**
+ * Extraction orchestrator
+ */
+export declare class ExtractionOrchestrator {
+    private rootDir;
+    private queries;
+    /**
+     * Names of frameworks detected for this project, populated by indexAll().
+     * Passed to extractFromSource so framework-specific extractors (route nodes,
+     * middleware, etc.) run after the tree-sitter pass. Cleared if detection
+     * hasn't run yet so single-file re-index paths can detect on the spot.
+     */
+    private detectedFrameworkNames;
+    /**
+     * Scope matcher for SCOPED syncs, memoized on the mtimes of the two root
+     * files it is derived from (`codegraph.json`, `.gitignore`). See
+     * {@link scopedSyncMatcher}.
+     */
+    private scopedMatcher;
+    constructor(rootDir: string, queries: QueryBuilder);
+    /**
+     * The scope matcher a scoped sync applies to the paths it was handed — the
+     * same `buildScopeIgnore` the full scan uses, so an explicitly-passed path
+     * that is OUT of scope (a user `exclude` in `codegraph.json`, a `.gitignore`
+     * rule, a built-in default) is treated exactly as the full walk would treat
+     * it: absent, hence removed if tracked, never parsed (#1590).
+     *
+     * Memoized on the root config + root `.gitignore` mtimes: building the
+     * matcher runs embedded-repo discovery (`git ls-files`), which would defeat
+     * the scoped path's whole point (skipping O(repo) work) if paid per sync.
+     * Two `stat`s per sync while nothing changed. An embedded repo created
+     * between config edits joins the scoped matcher on the next full sync, the
+     * same lifecycle the watcher's own matcher already has.
+     */
+    private scopedSyncMatcher;
+    /**
+     * Build a filesystem-backed ResolutionContext sufficient for framework
+     * detection. Graph-query methods (getNodesByName etc.) return empty because
+     * the DB hasn't been populated yet, but detect() only uses readFile,
+     * fileExists, and getAllFiles, so that's fine.
+     */
+    private buildDetectionContext;
+    /**
+     * Detect frameworks on demand using the current scanned files (or a fresh
+     * scan if none are provided). Cached on the orchestrator so repeat calls
+     * inside a single run don't re-scan.
+     */
+    private ensureDetectedFrameworks;
+    /**
+     * Index all files in the project
+     */
+    indexAll(onProgress?: (progress: IndexProgress) => void, signal?: AbortSignal, verbose?: boolean, walBackpressure?: () => Promise<void> | null, storeWriterOpts?: {
+        dbPath: string;
+        fastInit: boolean;
+    } | null): Promise<IndexResult>;
+    /**
+     * Index specific files
+     */
+    indexFiles(filePaths: string[]): Promise<IndexResult>;
+    /**
+     * Index a single file
+     */
+    indexFile(relativePath: string): Promise<ExtractionResult>;
+    /**
+     * Index a single file with pre-read content and stats.
+     * Used by the parallel batch reader to avoid redundant file I/O.
+     */
+    indexFileWithContent(relativePath: string, content: string, stats: fs.Stats): Promise<ExtractionResult>;
+    /**
+     * Store extraction result in database
+     */
+    /**
+     * Delete file rows recorded with ZERO nodes so their files re-index.
+     *
+     * No extraction path stores an empty, error-free result for a
+     * symbol-bearing language — even an empty file keeps its file node — so a
+     * zero-node row is a wiped one (#1541: an interrupted parse's retry stored
+     * an undecoded kernel transport). The wiped row's content hash matches the
+     * on-disk bytes, so every hash-based reconcile skips the file forever;
+     * deleting the row lets the normal add path repair it. File-level-only
+     * languages (yaml, twig, properties) are left alone. Deleting a zero-node
+     * row cascades nothing: it has no nodes, so no edges or refs either.
+     */
+    private healZeroNodeRows;
+    private storeExtractionResult;
+    /**
+     * Build one file's store bundle for the FRESH-DB path: no existing-file
+     * check, no cross-file edge snapshot (both are re-index concerns — a fresh
+     * database has neither). Filters mirror storeExtractionResult exactly.
+     */
+    /** The FileRecord for a fresh-index store (nodeCount is the PRE-filter count). */
+    private buildFileRecord;
+    private buildFreshStoreBundle;
+    /**
+     * Re-attach cross-file incoming edges snapshotted before a re-index delete
+     * (#899): re-resolve each edge's target to the re-indexed node's new id by
+     * (kind, name); targets that vanished are resurrected as their original
+     * unresolved ref (#1240's removal-side counterpart) when the edge carries
+     * its refName stamp.
+     */
+    private reattachCrossFileEdges;
+    /**
+     * Re-open, for re-resolution, every resolution edge whose answer this sync
+     * may have changed — the fix for index drift (CG-33).
+     *
+     * Incremental sync re-resolves only the references IN the changed files, but
+     * resolution's answer is a function of the WHOLE graph: a reference binds to
+     * one of the same-named definitions project-wide, so adding or removing a
+     * definition of `pct` can change which `pct` every other file's `pct(...)`
+     * should bind to. Those other files are never revisited, and their references
+     * resolved successfully once and were deleted from `unresolved_refs`, so
+     * nothing existed to revisit them with — the index kept an answer that was
+     * correct against an older graph. Measured on codegraph's own long-lived
+     * index: 4.3% of distinct edges differed from a clean rebuild, in BOTH
+     * directions, overwhelmingly `calls`. See docs/benchmarks/index-drift-cg33.md.
+     *
+     * This deletes each affected edge and re-inserts it as the reference that
+     * created it (the refName/refKind stamp), status='pending', for the sync's
+     * resolution sweep to bind against the post-sync graph — the same input a
+     * full rebuild resolves from, which is what makes the two converge.
+     *
+     * Deliberately conservative in three ways, because a wrong deletion is a
+     * permanent edge loss while a missed rebind is only residual drift:
+     * - an edge with no refName stamp (synthesized, or built by an engine older
+     *   than the stamp) is left ALONE rather than reconstructed from the target's
+     *   plain name, same rule as `resurrectRefFromDroppedEdge`;
+     * - edges whose source is in a file this sync already re-extracted are
+     *   skipped — their references were re-resolved from scratch moments ago;
+     * - very common names are skipped by the per-name ceiling in
+     *   `getResolutionEdgesByTargetName`.
+     *
+     * Returns the number of references resurrected.
+     */
+    resurrectStaleResolutionEdges(definitionDelta: string[], changedFilePaths: string[]): number;
+    /**
+     * Sync the index with the current file state.
+     *
+     * Change detection is filesystem-based, never git: a (size, mtime) stat
+     * pre-filter skips unchanged files, then a content-hash compare confirms real
+     * changes. This works in non-git projects and catches committed changes from
+     * `git pull`/`checkout`/`merge`/`rebase` that `git status` cannot see.
+     */
+    sync(onProgress?: (progress: IndexProgress) => void, 
+    /**
+     * Watcher fast path: the exact project-relative paths the OS reported as
+     * changed. When provided, reconciliation runs over ONLY these paths —
+     * per-path logic identical to the full walk (stat pre-filter, hash
+     * confirm, the #1240 removal/resurrection flow) — skipping the O(repo)
+     * scan and tracked-load. Callers must pass undefined whenever the change
+     * set is not exactly known (directory removals, event overflow): the full
+     * scan-diff remains the ground truth those cases need (#1285).
+     */
+    scopedPaths?: string[]): Promise<SyncResult>;
+    /**
+     * Get files that have changed since last index.
+     * Uses git status as a fast path when available, falling back to full scan.
+     */
+    getChangedFiles(): {
+        added: string[];
+        modified: string[];
+        removed: string[];
+    };
+}
+export { extractFromSource } from './tree-sitter';
+export { detectLanguage, isSourceFile, isLanguageSupported, isGrammarLoaded, getSupportedLanguages, initGrammars, loadGrammarsForLanguages, loadAllGrammars } from './grammars';
+//# sourceMappingURL=index.d.ts.map

package/dist/extraction/index.d.ts.map

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