claude-flow 3.10.1 → 3.10.4

package/.claude/worktrees/adr-120-impl/v3/@claude-flow/cli/src/commands/analyze.ts

@@ -1,2343 +0,0 @@
-/**
- * V3 CLI Analyze Command
- * Code analysis, diff classification, AST analysis, and change risk assessment
- *
- * Features:
- * - AST analysis using ruvector (tree-sitter) with graceful fallback
- * - Symbol extraction (functions, classes, variables, types)
- * - Cyclomatic complexity scoring
- * - Diff classification and risk assessment
- * - Graph boundaries using MinCut algorithm
- * - Module communities using Louvain algorithm
- * - Circular dependency detection
- *
- * Created with ruv.io
- */
-
-import type { Command, CommandContext, CommandResult } from '../types.js';
-import { output } from '../output.js';
-import { callMCPTool, MCPClientError } from '../mcp-client.js';
-import * as path from 'path';
-import * as fs from 'fs/promises';
-import { writeFile } from 'fs/promises';
-import { resolve } from 'path';
-import { execSync } from 'child_process';
-
-// Dynamic import for AST analyzer
-async function getASTAnalyzer() {
-  try {
-    return await import('../ruvector/ast-analyzer.js');
-  } catch {
-    return null;
-  }
-}
-
-// Dynamic import for graph analyzer
-async function getGraphAnalyzer() {
-  try {
-    return await import('../ruvector/graph-analyzer.js');
-  } catch {
-    return null;
-  }
-}
-
-// Diff subcommand
-const diffCommand: Command = {
-  name: 'diff',
-  description: 'Analyze git diff for change risk assessment and classification',
-  options: [
-    {
-      name: 'risk',
-      short: 'r',
-      description: 'Show risk assessment',
-      type: 'boolean',
-      default: false,
-    },
-    {
-      name: 'classify',
-      short: 'c',
-      description: 'Classify change type',
-      type: 'boolean',
-      default: false,
-    },
-    {
-      name: 'reviewers',
-      description: 'Show recommended reviewers',
-      type: 'boolean',
-      default: false,
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format: text, json, table',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json', 'table'],
-    },
-    {
-      name: 'verbose',
-      short: 'v',
-      description: 'Show detailed file-level analysis',
-      type: 'boolean',
-      default: false,
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze diff --risk', description: 'Analyze current diff with risk assessment' },
-    { command: 'claude-flow analyze diff HEAD~1 --classify', description: 'Classify changes from last commit' },
-    { command: 'claude-flow analyze diff main..feature --format json', description: 'Compare branches with JSON output' },
-    { command: 'claude-flow analyze diff --reviewers', description: 'Get recommended reviewers for changes' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const ref = ctx.args[0] || 'HEAD';
-    const showRisk = ctx.flags.risk as boolean;
-    const showClassify = ctx.flags.classify as boolean;
-    const showReviewers = ctx.flags.reviewers as boolean;
-    const formatType = ctx.flags.format as string || 'text';
-    const verbose = ctx.flags.verbose as boolean;
-
-    // If no specific flag, show all
-    const showAll = !showRisk && !showClassify && !showReviewers;
-
-    output.printInfo(`Analyzing diff: ${output.highlight(ref)}`);
-
-    try {
-      // Call MCP tool for diff analysis
-      const result = await callMCPTool<{
-        ref: string;
-        timestamp: string;
-        files: Array<{
-          path: string;
-          status: string;
-          additions: number;
-          deletions: number;
-          binary: boolean;
-        }>;
-        risk: {
-          overall: string;
-          score: number;
-          breakdown: {
-            fileCount: number;
-            totalChanges: number;
-            highRiskFiles: string[];
-            securityConcerns: string[];
-            breakingChanges: string[];
-            testCoverage: string;
-          };
-        };
-        classification: {
-          category: string;
-          subcategory?: string;
-          confidence: number;
-          reasoning: string;
-        };
-        fileRisks: Array<{
-          path: string;
-          risk: string;
-          score: number;
-          reasons: string[];
-        }>;
-        recommendedReviewers: string[];
-        summary: string;
-      }>('analyze_diff', {
-        ref,
-        includeFileRisks: verbose,
-        includeReviewers: showReviewers || showAll,
-      });
-
-      // JSON output
-      if (formatType === 'json') {
-        output.printJson(result);
-        return { success: true, data: result };
-      }
-
-      output.writeln();
-
-      // Summary box
-      const files = result.files || [];
-      const risk = result.risk || { overall: 'unknown', score: 0, breakdown: { fileCount: 0, totalChanges: 0, highRiskFiles: [], securityConcerns: [], breakingChanges: [], testCoverage: 'unknown' } };
-      const classification = result.classification || { category: 'unknown', confidence: 0, reasoning: '' };
-
-      output.printBox(
-        [
-          `Ref: ${result.ref || 'HEAD'}`,
-          `Files: ${files.length}`,
-          `Risk: ${getRiskDisplay(risk.overall)} (${risk.score}/100)`,
-          `Type: ${classification.category}${classification.subcategory ? ` (${classification.subcategory})` : ''}`,
-          ``,
-          result.summary || 'No summary available',
-        ].join('\n'),
-        'Diff Analysis'
-      );
-
-      // Risk assessment
-      if (showRisk || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Risk Assessment'));
-        output.writeln(output.dim('-'.repeat(50)));
-
-        output.printTable({
-          columns: [
-            { key: 'metric', header: 'Metric', width: 25 },
-            { key: 'value', header: 'Value', width: 30 },
-          ],
-          data: [
-            { metric: 'Overall Risk', value: getRiskDisplay(risk.overall) },
-            { metric: 'Risk Score', value: `${risk.score}/100` },
-            { metric: 'Files Changed', value: risk.breakdown.fileCount },
-            { metric: 'Total Lines Changed', value: risk.breakdown.totalChanges },
-            { metric: 'Test Coverage', value: risk.breakdown.testCoverage },
-          ],
-        });
-
-        // Security concerns
-        if (risk.breakdown.securityConcerns.length > 0) {
-          output.writeln();
-          output.writeln(output.bold(output.warning('Security Concerns')));
-          output.printList(risk.breakdown.securityConcerns.map(c => output.warning(c)));
-        }
-
-        // Breaking changes
-        if (risk.breakdown.breakingChanges.length > 0) {
-          output.writeln();
-          output.writeln(output.bold(output.error('Potential Breaking Changes')));
-          output.printList(risk.breakdown.breakingChanges.map(c => output.error(c)));
-        }
-
-        // High risk files
-        if (risk.breakdown.highRiskFiles.length > 0) {
-          output.writeln();
-          output.writeln(output.bold('High Risk Files'));
-          output.printList(risk.breakdown.highRiskFiles.map(f => output.warning(f)));
-        }
-      }
-
-      // Classification
-      if (showClassify || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Classification'));
-        output.writeln(output.dim('-'.repeat(50)));
-
-        output.printTable({
-          columns: [
-            { key: 'field', header: 'Field', width: 15 },
-            { key: 'value', header: 'Value', width: 40 },
-          ],
-          data: [
-            { field: 'Category', value: classification.category },
-            { field: 'Subcategory', value: classification.subcategory || '-' },
-            { field: 'Confidence', value: `${(classification.confidence * 100).toFixed(0)}%` },
-          ],
-        });
-
-        output.writeln();
-        output.writeln(output.dim(`Reasoning: ${classification.reasoning}`));
-      }
-
-      // Reviewers
-      if (showReviewers || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Recommended Reviewers'));
-        output.writeln(output.dim('-'.repeat(50)));
-
-        const reviewers = result.recommendedReviewers || [];
-        if (reviewers.length > 0) {
-          output.printNumberedList(reviewers.map(r => output.highlight(r)));
-        } else {
-          output.writeln(output.dim('No specific reviewers recommended'));
-        }
-      }
-
-      // Verbose file-level details
-      if (verbose && result.fileRisks) {
-        output.writeln();
-        output.writeln(output.bold('File-Level Analysis'));
-        output.writeln(output.dim('-'.repeat(50)));
-
-        output.printTable({
-          columns: [
-            { key: 'path', header: 'File', width: 40 },
-            { key: 'risk', header: 'Risk', width: 12, format: (v) => getRiskDisplay(String(v)) },
-            { key: 'score', header: 'Score', width: 8, align: 'right' },
-            { key: 'reasons', header: 'Reasons', width: 30, format: (v) => {
-              const reasons = v as string[];
-              return reasons.slice(0, 2).join('; ');
-            }},
-          ],
-          data: result.fileRisks,
-        });
-      }
-
-      // Files changed table
-      if (formatType === 'table' || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Files Changed'));
-        output.writeln(output.dim('-'.repeat(50)));
-
-        output.printTable({
-          columns: [
-            { key: 'status', header: 'Status', width: 10, format: (v) => getStatusDisplay(String(v)) },
-            { key: 'path', header: 'File', width: 45 },
-            { key: 'additions', header: '+', width: 8, align: 'right', format: (v) => output.success(`+${v}`) },
-            { key: 'deletions', header: '-', width: 8, align: 'right', format: (v) => output.error(`-${v}`) },
-          ],
-          data: files.slice(0, 20),
-        });
-
-        if (files.length > 20) {
-          output.writeln(output.dim(`  ... and ${files.length - 20} more files`));
-        }
-      }
-
-      return { success: true, data: result };
-    } catch (error) {
-      if (error instanceof MCPClientError) {
-        output.printError(`Diff analysis failed: ${error.message}`);
-      } else {
-        output.printError(`Unexpected error: ${String(error)}`);
-      }
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-// Code subcommand (placeholder for future code analysis)
-const codeCommand: Command = {
-  name: 'code',
-  description: 'Static code analysis and quality assessment',
-  options: [
-    { name: 'path', short: 'p', type: 'string', description: 'Path to analyze', default: '.' },
-    { name: 'type', short: 't', type: 'string', description: 'Analysis type: quality, complexity, security', default: 'quality' },
-    { name: 'format', short: 'f', type: 'string', description: 'Output format: text, json', default: 'text' },
-  ],
-  examples: [
-    { command: 'claude-flow analyze code -p ./src', description: 'Analyze source directory' },
-    { command: 'claude-flow analyze code --type complexity', description: 'Run complexity analysis' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetPath = resolve(ctx.flags.path as string || '.');
-    const analysisType = ctx.flags.type as string || 'quality';
-    const formatJson = (ctx.flags.format as string) === 'json';
-
-    output.writeln();
-    output.writeln(output.bold('Code Analysis'));
-    output.writeln(output.dim('-'.repeat(50)));
-
-    const spinner = output.createSpinner({ text: `Analyzing ${targetPath}...`, spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const files = await scanSourceFiles(targetPath);
-      if (files.length === 0) {
-        spinner.stop();
-        output.printWarning('No source files found');
-        return { success: true };
-      }
-
-      const fileStats: Array<{ file: string; loc: number; todos: number; functions: number; imports: number; maxNesting: number; securityIssues: string[] }> = [];
-
-      for (const filePath of files) {
-        const content = await fs.readFile(filePath, 'utf-8');
-        const lines = content.split('\n');
-        const nonEmpty = lines.filter(l => l.trim().length > 0 && !/^\s*(\/\/|\/\*|\*\s|#)/.test(l)).length;
-        const todos = (content.match(/\b(TODO|FIXME|HACK|XXX)\b/gi) || []).length;
-        const fns = (content.match(/(?:export\s+)?(?:async\s+)?function\s+\w+|(?:const|let|var)\s+\w+\s*=\s*(?:async\s+)?\([^)]*\)\s*=>/g) || []).length;
-        const imps = (content.match(/^import\s+/gm) || []).length + (content.match(/require\s*\(/g) || []).length;
-
-        let maxNesting = 0;
-        let nesting = 0;
-        for (const line of lines) {
-          nesting += (line.match(/\{/g) || []).length;
-          nesting -= (line.match(/\}/g) || []).length;
-          if (nesting > maxNesting) maxNesting = nesting;
-        }
-
-        const securityIssues: string[] = [];
-        if (/\beval\s*\(/.test(content)) securityIssues.push('eval()');
-        if (/\bexec\s*\(/.test(content)) securityIssues.push('exec()');
-        if (/\.innerHTML\s*=/.test(content)) securityIssues.push('innerHTML');
-        if (/dangerouslySetInnerHTML/.test(content)) securityIssues.push('dangerouslySetInnerHTML');
-        if (/['"](?:password|secret|api[_-]?key|token)\s*[:=]\s*['"][^'"]{3,}['"]/i.test(content)) securityIssues.push('hardcoded secret');
-        if (/new\s+Function\s*\(/.test(content)) securityIssues.push('new Function()');
-
-        fileStats.push({
-          file: filePath,
-          loc: nonEmpty,
-          todos,
-          functions: fns,
-          imports: imps,
-          maxNesting,
-          securityIssues,
-        });
-      }
-
-      spinner.stop();
-
-      const totalLoc = fileStats.reduce((s, f) => s + f.loc, 0);
-      const totalTodos = fileStats.reduce((s, f) => s + f.todos, 0);
-      const totalFunctions = fileStats.reduce((s, f) => s + f.functions, 0);
-      const totalImports = fileStats.reduce((s, f) => s + f.imports, 0);
-      const avgFileSize = Math.round(totalLoc / files.length);
-      const longestFile = fileStats.reduce((a, b) => a.loc > b.loc ? a : b);
-      const avgFnPerFile = (totalFunctions / files.length).toFixed(1);
-      const deepestNesting = fileStats.reduce((a, b) => a.maxNesting > b.maxNesting ? a : b);
-      const allSecurityIssues = fileStats.filter(f => f.securityIssues.length > 0);
-
-      if (formatJson) {
-        const jsonData = { type: analysisType, path: targetPath, files: files.length, totalLoc, totalTodos, totalFunctions, totalImports, avgFileSize, fileStats: fileStats.map(f => ({ relativePath: path.relative(targetPath, f.file), loc: f.loc, todos: f.todos, functions: f.functions, imports: f.imports, maxNesting: f.maxNesting, securityIssues: f.securityIssues })) };
-        output.printJson(jsonData);
-        return { success: true, data: jsonData };
-      }
-
-      if (analysisType === 'quality') {
-        output.printBox(
-          [`Files: ${files.length}`, `Lines of Code: ${totalLoc.toLocaleString()}`, `Avg File Size: ${avgFileSize} LOC`, `TODO/FIXME: ${totalTodos}`, `Functions: ${totalFunctions}`, `Imports: ${totalImports}`].join('\n'),
-          'Quality Summary'
-        );
-        output.writeln();
-        output.writeln(output.bold('Largest Files'));
-        output.writeln(output.dim('-'.repeat(60)));
-        const top10 = [...fileStats].sort((a, b) => b.loc - a.loc).slice(0, 10);
-        output.printTable({
-          columns: [
-            { key: 'file', header: 'File', width: 45 },
-            { key: 'loc', header: 'LOC', width: 8, align: 'right' as const },
-            { key: 'fns', header: 'Fns', width: 6, align: 'right' as const },
-            { key: 'todos', header: 'TODOs', width: 7, align: 'right' as const },
-          ],
-          data: top10.map(f => ({ file: path.relative(targetPath, f.file), loc: f.loc, fns: f.functions, todos: f.todos })),
-        });
-        if (totalTodos > 0) {
-          output.writeln();
-          output.printWarning(`${totalTodos} TODO/FIXME comments found across ${fileStats.filter(f => f.todos > 0).length} files`);
-        }
-      } else if (analysisType === 'complexity') {
-        output.printBox(
-          [`Files: ${files.length}`, `Total Functions: ${totalFunctions}`, `Avg Functions/File: ${avgFnPerFile}`, `Deepest Nesting: ${deepestNesting.maxNesting} levels (${path.relative(targetPath, deepestNesting.file)})`, `Longest File: ${longestFile.loc} LOC (${path.relative(targetPath, longestFile.file)})`].join('\n'),
-          'Complexity Summary'
-        );
-        output.writeln();
-        output.writeln(output.bold('High Complexity Files (nesting > 5)'));
-        output.writeln(output.dim('-'.repeat(60)));
-        const complex = fileStats.filter(f => f.maxNesting > 5).sort((a, b) => b.maxNesting - a.maxNesting);
-        if (complex.length === 0) {
-          output.printSuccess('No files with excessive nesting detected');
-        } else {
-          output.printTable({
-            columns: [
-              { key: 'file', header: 'File', width: 45 },
-              { key: 'nesting', header: 'Max Nest', width: 10, align: 'right' as const },
-              { key: 'fns', header: 'Fns', width: 6, align: 'right' as const },
-              { key: 'loc', header: 'LOC', width: 8, align: 'right' as const },
-            ],
-            data: complex.slice(0, 15).map(f => ({ file: path.relative(targetPath, f.file), nesting: f.maxNesting, fns: f.functions, loc: f.loc })),
-          });
-        }
-      } else if (analysisType === 'security') {
-        output.printBox(
-          [`Files Scanned: ${files.length}`, `Files with Issues: ${allSecurityIssues.length}`, `Total Issues: ${allSecurityIssues.reduce((s, f) => s + f.securityIssues.length, 0)}`].join('\n'),
-          'Security Summary'
-        );
-        if (allSecurityIssues.length === 0) {
-          output.writeln();
-          output.printSuccess('No common security patterns detected');
-        } else {
-          output.writeln();
-          output.writeln(output.bold('Security Concerns'));
-          output.writeln(output.dim('-'.repeat(60)));
-          output.printTable({
-            columns: [
-              { key: 'file', header: 'File', width: 40 },
-              { key: 'issues', header: 'Issues', width: 35 },
-            ],
-            data: allSecurityIssues.map(f => ({ file: path.relative(targetPath, f.file), issues: f.securityIssues.join(', ') })),
-          });
-        }
-      } else {
-        output.printWarning(`Unknown analysis type: ${analysisType}. Use quality, complexity, or security.`);
-      }
-
-      return { success: true };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Code analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-// ============================================================================
-// AST Analysis Subcommands (using ruvector tree-sitter with fallback)
-// ============================================================================
-
-/**
- * Helper: Truncate file path for display
- */
-function truncatePathAst(filePath: string, maxLen: number = 45): string {
-  if (filePath.length <= maxLen) return filePath;
-  return '...' + filePath.slice(-(maxLen - 3));
-}
-
-/**
- * Helper: Format complexity value with color coding
- */
-function formatComplexityValueAst(value: number): string {
-  if (value <= 5) return output.success(String(value));
-  if (value <= 10) return output.warning(String(value));
-  return output.error(String(value));
-}
-
-/**
- * Helper: Get type marker for symbols
- */
-function getTypeMarkerAst(type: string): string {
-  switch (type) {
-    case 'function': return output.success('fn');
-    case 'class': return output.info('class');
-    case 'variable': return output.dim('var');
-    case 'type': return output.highlight('type');
-    case 'interface': return output.highlight('iface');
-    default: return output.dim(type.slice(0, 5));
-  }
-}
-
-/**
- * Helper: Get complexity rating text
- */
-function getComplexityRatingAst(value: number): string {
-  if (value <= 5) return output.success('Simple');
-  if (value <= 10) return output.warning('Moderate');
-  if (value <= 20) return output.error('Complex');
-  return output.error(output.bold('Very Complex'));
-}
-
-/**
- * AST analysis subcommand
- */
-const astCommand: Command = {
-  name: 'ast',
-  description: 'Analyze code using AST parsing (tree-sitter via ruvector)',
-  options: [
-    {
-      name: 'complexity',
-      short: 'c',
-      description: 'Include complexity metrics',
-      type: 'boolean',
-      default: false,
-    },
-    {
-      name: 'symbols',
-      short: 's',
-      description: 'Include symbol extraction',
-      type: 'boolean',
-      default: false,
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json, table)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json', 'table'],
-    },
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'verbose',
-      short: 'v',
-      description: 'Show detailed analysis',
-      type: 'boolean',
-      default: false,
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze ast src/', description: 'Analyze all files in src/' },
-    { command: 'claude-flow analyze ast src/index.ts --complexity', description: 'Analyze with complexity' },
-    { command: 'claude-flow analyze ast . --format json', description: 'JSON output' },
-    { command: 'claude-flow analyze ast src/ --symbols', description: 'Extract symbols' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetPath = ctx.args[0] || ctx.cwd;
-    const showComplexity = ctx.flags.complexity as boolean;
-    const showSymbols = ctx.flags.symbols as boolean;
-    const formatType = (ctx.flags.format as string) || 'text';
-    const outputFile = ctx.flags.output as string | undefined;
-    const verbose = ctx.flags.verbose as boolean;
-
-    // If no specific flags, show summary
-    const showAll = !showComplexity && !showSymbols;
-
-    output.printInfo(`Analyzing: ${output.highlight(targetPath)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Parsing AST...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const astModule = await getASTAnalyzer();
-      if (!astModule) {
-        spinner.stop();
-        output.printWarning('AST analyzer not available, using regex fallback');
-      }
-
-      // Resolve path and check if file or directory
-      const resolvedPath = resolve(targetPath);
-      const stat = await fs.stat(resolvedPath);
-      const isDirectory = stat.isDirectory();
-
-      let results: Array<{
-        filePath: string;
-        language: string;
-        functions: Array<{ name: string; startLine: number; endLine: number }>;
-        classes: Array<{ name: string; startLine: number; endLine: number }>;
-        imports: string[];
-        exports: string[];
-        complexity: { cyclomatic: number; cognitive: number; loc: number; commentDensity: number };
-      }> = [];
-
-      if (isDirectory) {
-        // Scan directory for source files
-        const files = await scanSourceFiles(resolvedPath);
-        spinner.stop();
-        output.printInfo(`Found ${files.length} source files`);
-        spinner.start();
-
-        for (const file of files.slice(0, 100)) {
-          try {
-            const content = await fs.readFile(file, 'utf-8');
-            if (astModule) {
-              const analyzer = astModule.createASTAnalyzer();
-              const analysis = analyzer.analyze(content, file);
-              results.push(analysis);
-            } else {
-              // Fallback analysis
-              results.push(fallbackAnalyze(content, file));
-            }
-          } catch {
-            // Skip files that can't be analyzed
-          }
-        }
-      } else {
-        // Single file
-        const content = await fs.readFile(resolvedPath, 'utf-8');
-        if (astModule) {
-          const analyzer = astModule.createASTAnalyzer();
-          const analysis = analyzer.analyze(content, resolvedPath);
-          results.push(analysis);
-        } else {
-          results.push(fallbackAnalyze(content, resolvedPath));
-        }
-      }
-
-      spinner.stop();
-
-      if (results.length === 0) {
-        output.printWarning('No files analyzed');
-        return { success: true };
-      }
-
-      // Calculate totals
-      const totals = {
-        files: results.length,
-        functions: results.reduce((sum, r) => sum + r.functions.length, 0),
-        classes: results.reduce((sum, r) => sum + r.classes.length, 0),
-        imports: results.reduce((sum, r) => sum + r.imports.length, 0),
-        avgComplexity: results.reduce((sum, r) => sum + r.complexity.cyclomatic, 0) / results.length,
-        totalLoc: results.reduce((sum, r) => sum + r.complexity.loc, 0),
-      };
-
-      // JSON output
-      if (formatType === 'json') {
-        const jsonOutput = { files: results, totals };
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-        return { success: true, data: jsonOutput };
-      }
-
-      // Summary box
-      output.printBox(
-        [
-          `Files analyzed: ${totals.files}`,
-          `Functions: ${totals.functions}`,
-          `Classes: ${totals.classes}`,
-          `Total LOC: ${totals.totalLoc}`,
-          `Avg Complexity: ${formatComplexityValueAst(Math.round(totals.avgComplexity))}`,
-        ].join('\n'),
-        'AST Analysis Summary'
-      );
-
-      // Complexity view
-      if (showComplexity || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Complexity by File'));
-        output.writeln(output.dim('-'.repeat(60)));
-
-        const complexityData = results
-          .map(r => ({
-            file: truncatePathAst(r.filePath),
-            cyclomatic: r.complexity.cyclomatic,
-            cognitive: r.complexity.cognitive,
-            loc: r.complexity.loc,
-            rating: getComplexityRatingAst(r.complexity.cyclomatic),
-          }))
-          .sort((a, b) => b.cyclomatic - a.cyclomatic)
-          .slice(0, 15);
-
-        output.printTable({
-          columns: [
-            { key: 'file', header: 'File', width: 40 },
-            { key: 'cyclomatic', header: 'Cyclo', width: 8, align: 'right', format: (v) => formatComplexityValueAst(v as number) },
-            { key: 'cognitive', header: 'Cogni', width: 8, align: 'right' },
-            { key: 'loc', header: 'LOC', width: 8, align: 'right' },
-            { key: 'rating', header: 'Rating', width: 15 },
-          ],
-          data: complexityData,
-        });
-
-        if (results.length > 15) {
-          output.writeln(output.dim(`  ... and ${results.length - 15} more files`));
-        }
-      }
-
-      // Symbols view
-      if (showSymbols || showAll) {
-        output.writeln();
-        output.writeln(output.bold('Extracted Symbols'));
-        output.writeln(output.dim('-'.repeat(60)));
-
-        const allSymbols: Array<{ name: string; type: string; file: string; line: number }> = [];
-
-        for (const r of results) {
-          for (const fn of r.functions) {
-            allSymbols.push({ name: fn.name, type: 'function', file: truncatePathAst(r.filePath, 30), line: fn.startLine });
-          }
-          for (const cls of r.classes) {
-            allSymbols.push({ name: cls.name, type: 'class', file: truncatePathAst(r.filePath, 30), line: cls.startLine });
-          }
-        }
-
-        const displaySymbols = allSymbols.slice(0, 20);
-
-        output.printTable({
-          columns: [
-            { key: 'type', header: 'Type', width: 8, format: (v) => getTypeMarkerAst(v as string) },
-            { key: 'name', header: 'Symbol', width: 30 },
-            { key: 'file', header: 'File', width: 35 },
-            { key: 'line', header: 'Line', width: 8, align: 'right' },
-          ],
-          data: displaySymbols,
-        });
-
-        if (allSymbols.length > 20) {
-          output.writeln(output.dim(`  ... and ${allSymbols.length - 20} more symbols`));
-        }
-      }
-
-      // Verbose output
-      if (verbose) {
-        output.writeln();
-        output.writeln(output.bold('Import Analysis'));
-        output.writeln(output.dim('-'.repeat(60)));
-
-        const importCounts: Map<string, number> = new Map();
-        for (const r of results) {
-          for (const imp of r.imports) {
-            importCounts.set(imp, (importCounts.get(imp) || 0) + 1);
-          }
-        }
-
-        const topImports = Array.from(importCounts.entries())
-          .sort((a, b) => b[1] - a[1])
-          .slice(0, 10);
-
-        for (const [imp, count] of topImports) {
-          output.writeln(`  ${output.highlight(count.toString().padStart(3))} ${imp}`);
-        }
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify({ files: results, totals }, null, 2));
-        output.printSuccess(`Results written to ${outputFile}`);
-      }
-
-      return { success: true, data: { files: results, totals } };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`AST analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Complexity analysis subcommand
- */
-const complexityAstCommand: Command = {
-  name: 'complexity',
-  aliases: ['cx'],
-  description: 'Analyze code complexity metrics',
-  options: [
-    {
-      name: 'threshold',
-      short: 't',
-      description: 'Complexity threshold to flag (default: 10)',
-      type: 'number',
-      default: 10,
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json'],
-    },
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze complexity src/', description: 'Analyze complexity' },
-    { command: 'claude-flow analyze complexity src/ --threshold 15', description: 'Flag high complexity' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetPath = ctx.args[0] || ctx.cwd;
-    const threshold = (ctx.flags.threshold as number) || 10;
-    const formatType = (ctx.flags.format as string) || 'text';
-    const outputFile = ctx.flags.output as string | undefined;
-
-    output.printInfo(`Analyzing complexity: ${output.highlight(targetPath)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Calculating complexity...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const astModule = await getASTAnalyzer();
-      const resolvedPath = resolve(targetPath);
-      const stat = await fs.stat(resolvedPath);
-      const files = stat.isDirectory() ? await scanSourceFiles(resolvedPath) : [resolvedPath];
-
-      const results: Array<{
-        file: string;
-        cyclomatic: number;
-        cognitive: number;
-        loc: number;
-        commentDensity: number;
-        rating: string;
-        flagged: boolean;
-      }> = [];
-
-      for (const file of files.slice(0, 100)) {
-        try {
-          const content = await fs.readFile(file, 'utf-8');
-          let analysis;
-
-          if (astModule) {
-            const analyzer = astModule.createASTAnalyzer();
-            analysis = analyzer.analyze(content, file);
-          } else {
-            analysis = fallbackAnalyze(content, file);
-          }
-
-          const flagged = analysis.complexity.cyclomatic > threshold;
-          const rating = analysis.complexity.cyclomatic <= 5 ? 'Simple' :
-            analysis.complexity.cyclomatic <= 10 ? 'Moderate' :
-            analysis.complexity.cyclomatic <= 20 ? 'Complex' : 'Very Complex';
-
-          results.push({
-            file: file,
-            cyclomatic: analysis.complexity.cyclomatic,
-            cognitive: analysis.complexity.cognitive,
-            loc: analysis.complexity.loc,
-            commentDensity: analysis.complexity.commentDensity,
-            rating,
-            flagged,
-          });
-        } catch {
-          // Skip files that can't be analyzed
-        }
-      }
-
-      spinner.stop();
-
-      // Sort by complexity descending
-      results.sort((a, b) => b.cyclomatic - a.cyclomatic);
-
-      const flaggedCount = results.filter(r => r.flagged).length;
-      const avgComplexity = results.length > 0
-        ? results.reduce((sum, r) => sum + r.cyclomatic, 0) / results.length
-        : 0;
-
-      if (formatType === 'json') {
-        const jsonOutput = { files: results, summary: { total: results.length, flagged: flaggedCount, avgComplexity, threshold } };
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-        return { success: true, data: jsonOutput };
-      }
-
-      // Summary
-      output.printBox(
-        [
-          `Files analyzed: ${results.length}`,
-          `Threshold: ${threshold}`,
-          `Flagged files: ${flaggedCount > 0 ? output.error(String(flaggedCount)) : output.success('0')}`,
-          `Average complexity: ${formatComplexityValueAst(Math.round(avgComplexity))}`,
-        ].join('\n'),
-        'Complexity Analysis'
-      );
-
-      // Show flagged files first
-      if (flaggedCount > 0) {
-        output.writeln();
-        output.writeln(output.bold(output.warning(`High Complexity Files (>${threshold})`)));
-        output.writeln(output.dim('-'.repeat(60)));
-
-        const flaggedFiles = results.filter(r => r.flagged).slice(0, 10);
-        output.printTable({
-          columns: [
-            { key: 'file', header: 'File', width: 40, format: (v) => truncatePathAst(v as string) },
-            { key: 'cyclomatic', header: 'Cyclo', width: 8, align: 'right', format: (v) => output.error(String(v)) },
-            { key: 'cognitive', header: 'Cogni', width: 8, align: 'right' },
-            { key: 'loc', header: 'LOC', width: 8, align: 'right' },
-            { key: 'rating', header: 'Rating', width: 15 },
-          ],
-          data: flaggedFiles,
-        });
-      }
-
-      // Show all files in table format
-      output.writeln();
-      output.writeln(output.bold('All Files'));
-      output.writeln(output.dim('-'.repeat(60)));
-
-      const displayFiles = results.slice(0, 15);
-      output.printTable({
-        columns: [
-          { key: 'file', header: 'File', width: 40, format: (v) => truncatePathAst(v as string) },
-          { key: 'cyclomatic', header: 'Cyclo', width: 8, align: 'right', format: (v) => formatComplexityValueAst(v as number) },
-          { key: 'cognitive', header: 'Cogni', width: 8, align: 'right' },
-          { key: 'loc', header: 'LOC', width: 8, align: 'right' },
-        ],
-        data: displayFiles,
-      });
-
-      if (results.length > 15) {
-        output.writeln(output.dim(`  ... and ${results.length - 15} more files`));
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify({ files: results, summary: { total: results.length, flagged: flaggedCount, avgComplexity, threshold } }, null, 2));
-        output.printSuccess(`Results written to ${outputFile}`);
-      }
-
-      return { success: true, data: { files: results, flaggedCount } };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Complexity analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Symbol extraction subcommand
- */
-const symbolsCommand: Command = {
-  name: 'symbols',
-  aliases: ['sym'],
-  description: 'Extract and list code symbols (functions, classes, types)',
-  options: [
-    {
-      name: 'type',
-      short: 't',
-      description: 'Filter by symbol type (function, class, all)',
-      type: 'string',
-      default: 'all',
-      choices: ['function', 'class', 'all'],
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json'],
-    },
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze symbols src/', description: 'Extract all symbols' },
-    { command: 'claude-flow analyze symbols src/ --type function', description: 'Only functions' },
-    { command: 'claude-flow analyze symbols src/ --format json', description: 'JSON output' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetPath = ctx.args[0] || ctx.cwd;
-    const symbolType = (ctx.flags.type as string) || 'all';
-    const formatType = (ctx.flags.format as string) || 'text';
-    const outputFile = ctx.flags.output as string | undefined;
-
-    output.printInfo(`Extracting symbols: ${output.highlight(targetPath)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Parsing code...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const astModule = await getASTAnalyzer();
-      const resolvedPath = resolve(targetPath);
-      const stat = await fs.stat(resolvedPath);
-      const files = stat.isDirectory() ? await scanSourceFiles(resolvedPath) : [resolvedPath];
-
-      const symbols: Array<{
-        name: string;
-        type: string;
-        file: string;
-        startLine: number;
-        endLine: number;
-      }> = [];
-
-      for (const file of files.slice(0, 100)) {
-        try {
-          const content = await fs.readFile(file, 'utf-8');
-          let analysis;
-
-          if (astModule) {
-            const analyzer = astModule.createASTAnalyzer();
-            analysis = analyzer.analyze(content, file);
-          } else {
-            analysis = fallbackAnalyze(content, file);
-          }
-
-          if (symbolType === 'all' || symbolType === 'function') {
-            for (const fn of analysis.functions) {
-              symbols.push({
-                name: fn.name,
-                type: 'function',
-                file,
-                startLine: fn.startLine,
-                endLine: fn.endLine,
-              });
-            }
-          }
-
-          if (symbolType === 'all' || symbolType === 'class') {
-            for (const cls of analysis.classes) {
-              symbols.push({
-                name: cls.name,
-                type: 'class',
-                file,
-                startLine: cls.startLine,
-                endLine: cls.endLine,
-              });
-            }
-          }
-        } catch {
-          // Skip files that can't be parsed
-        }
-      }
-
-      spinner.stop();
-
-      // Sort by file then name
-      symbols.sort((a, b) => a.file.localeCompare(b.file) || a.name.localeCompare(b.name));
-
-      if (formatType === 'json') {
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(symbols, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(symbols);
-        }
-        return { success: true, data: symbols };
-      }
-
-      // Summary
-      const functionCount = symbols.filter(s => s.type === 'function').length;
-      const classCount = symbols.filter(s => s.type === 'class').length;
-
-      output.printBox(
-        [
-          `Total symbols: ${symbols.length}`,
-          `Functions: ${functionCount}`,
-          `Classes: ${classCount}`,
-          `Files: ${files.length}`,
-        ].join('\n'),
-        'Symbol Extraction'
-      );
-
-      output.writeln();
-      output.writeln(output.bold('Symbols'));
-      output.writeln(output.dim('-'.repeat(60)));
-
-      const displaySymbols = symbols.slice(0, 30);
-      output.printTable({
-        columns: [
-          { key: 'type', header: 'Type', width: 10, format: (v) => getTypeMarkerAst(v as string) },
-          { key: 'name', header: 'Name', width: 30 },
-          { key: 'file', header: 'File', width: 35, format: (v) => truncatePathAst(v as string, 33) },
-          { key: 'startLine', header: 'Line', width: 8, align: 'right' },
-        ],
-        data: displaySymbols,
-      });
-
-      if (symbols.length > 30) {
-        output.writeln(output.dim(`  ... and ${symbols.length - 30} more symbols`));
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify(symbols, null, 2));
-        output.printSuccess(`Results written to ${outputFile}`);
-      }
-
-      return { success: true, data: symbols };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Symbol extraction failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Imports analysis subcommand
- */
-const importsCommand: Command = {
-  name: 'imports',
-  aliases: ['imp'],
-  description: 'Analyze import dependencies across files',
-  options: [
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json'],
-    },
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'external',
-      short: 'e',
-      description: 'Show only external (npm) imports',
-      type: 'boolean',
-      default: false,
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze imports src/', description: 'Analyze all imports' },
-    { command: 'claude-flow analyze imports src/ --external', description: 'Only npm packages' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetPath = ctx.args[0] || ctx.cwd;
-    const formatType = (ctx.flags.format as string) || 'text';
-    const outputFile = ctx.flags.output as string | undefined;
-    const externalOnly = ctx.flags.external as boolean;
-
-    output.printInfo(`Analyzing imports: ${output.highlight(targetPath)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Scanning imports...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const astModule = await getASTAnalyzer();
-      const resolvedPath = resolve(targetPath);
-      const stat = await fs.stat(resolvedPath);
-      const files = stat.isDirectory() ? await scanSourceFiles(resolvedPath) : [resolvedPath];
-
-      const importCounts: Map<string, { count: number; files: string[] }> = new Map();
-      const fileImports: Map<string, string[]> = new Map();
-
-      for (const file of files.slice(0, 100)) {
-        try {
-          const content = await fs.readFile(file, 'utf-8');
-          let analysis;
-
-          if (astModule) {
-            const analyzer = astModule.createASTAnalyzer();
-            analysis = analyzer.analyze(content, file);
-          } else {
-            analysis = fallbackAnalyze(content, file);
-          }
-
-          const imports = analysis.imports.filter(imp => {
-            if (externalOnly) {
-              return !imp.startsWith('.') && !imp.startsWith('/');
-            }
-            return true;
-          });
-
-          fileImports.set(file, imports);
-
-          for (const imp of imports) {
-            const existing = importCounts.get(imp) || { count: 0, files: [] };
-            existing.count++;
-            existing.files.push(file);
-            importCounts.set(imp, existing);
-          }
-        } catch {
-          // Skip files that can't be parsed
-        }
-      }
-
-      spinner.stop();
-
-      // Sort by count
-      const sortedImports = Array.from(importCounts.entries())
-        .sort((a, b) => b[1].count - a[1].count);
-
-      if (formatType === 'json') {
-        const jsonOutput = {
-          imports: Object.fromEntries(sortedImports),
-          fileImports: Object.fromEntries(fileImports),
-        };
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-        return { success: true, data: jsonOutput };
-      }
-
-      // Summary
-      const externalImports = sortedImports.filter(([imp]) => !imp.startsWith('.') && !imp.startsWith('/'));
-      const localImports = sortedImports.filter(([imp]) => imp.startsWith('.') || imp.startsWith('/'));
-
-      output.printBox(
-        [
-          `Total unique imports: ${sortedImports.length}`,
-          `External (npm): ${externalImports.length}`,
-          `Local (relative): ${localImports.length}`,
-          `Files scanned: ${files.length}`,
-        ].join('\n'),
-        'Import Analysis'
-      );
-
-      // Most used imports
-      output.writeln();
-      output.writeln(output.bold('Most Used Imports'));
-      output.writeln(output.dim('-'.repeat(60)));
-
-      const topImports = sortedImports.slice(0, 20);
-      output.printTable({
-        columns: [
-          { key: 'count', header: 'Uses', width: 8, align: 'right' },
-          { key: 'import', header: 'Import', width: 50 },
-          { key: 'type', header: 'Type', width: 10 },
-        ],
-        data: topImports.map(([imp, data]) => ({
-          count: data.count,
-          import: imp,
-          type: imp.startsWith('.') || imp.startsWith('/') ? output.dim('local') : output.highlight('npm'),
-        })),
-      });
-
-      if (sortedImports.length > 20) {
-        output.writeln(output.dim(`  ... and ${sortedImports.length - 20} more imports`));
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify({
-          imports: Object.fromEntries(sortedImports),
-          fileImports: Object.fromEntries(fileImports),
-        }, null, 2));
-        output.printSuccess(`Results written to ${outputFile}`);
-      }
-
-      return { success: true, data: { imports: sortedImports } };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Import analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Helper: Scan directory for source files
- */
-async function scanSourceFiles(dir: string, maxDepth: number = 10): Promise<string[]> {
-  const files: string[] = [];
-  const extensions = ['.ts', '.tsx', '.js', '.jsx', '.mjs', '.cjs'];
-  const excludeDirs = ['node_modules', 'dist', 'build', '.git', 'coverage', '__pycache__'];
-
-  async function scan(currentDir: string, depth: number): Promise<void> {
-    if (depth > maxDepth) return;
-
-    try {
-      const entries = await fs.readdir(currentDir, { withFileTypes: true });
-
-      for (const entry of entries) {
-        const fullPath = path.join(currentDir, entry.name);
-
-        if (entry.isDirectory()) {
-          if (!excludeDirs.includes(entry.name)) {
-            await scan(fullPath, depth + 1);
-          }
-        } else if (entry.isFile()) {
-          const ext = path.extname(entry.name);
-          if (extensions.includes(ext)) {
-            files.push(fullPath);
-          }
-        }
-      }
-    } catch {
-      // Skip directories we can't read
-    }
-  }
-
-  await scan(dir, 0);
-  return files;
-}
-
-/**
- * Fallback analysis when ruvector is not available
- */
-function fallbackAnalyze(code: string, filePath: string) {
-  const lines = code.split('\n');
-  const functions: Array<{ name: string; startLine: number; endLine: number }> = [];
-  const classes: Array<{ name: string; startLine: number; endLine: number }> = [];
-  const imports: string[] = [];
-  const exports: string[] = [];
-
-  // Extract functions
-  const funcPattern = /(?:export\s+)?(?:async\s+)?function\s+(\w+)|(?:const|let|var)\s+(\w+)\s*=\s*(?:async\s+)?\([^)]*\)\s*=>|^\s*(?:async\s+)?(\w+)\s*\([^)]*\)\s*(?::\s*\w+)?\s*\{/gm;
-  let match;
-  while ((match = funcPattern.exec(code)) !== null) {
-    const name = match[1] || match[2] || match[3];
-    if (name && !['if', 'while', 'for', 'switch'].includes(name)) {
-      const lineNum = code.substring(0, match.index).split('\n').length;
-      functions.push({ name, startLine: lineNum, endLine: lineNum + 10 });
-    }
-  }
-
-  // Extract classes
-  const classPattern = /(?:export\s+)?class\s+(\w+)/gm;
-  while ((match = classPattern.exec(code)) !== null) {
-    const lineNum = code.substring(0, match.index).split('\n').length;
-    classes.push({ name: match[1], startLine: lineNum, endLine: lineNum + 20 });
-  }
-
-  // Extract imports
-  const importPattern = /import\s+(?:.*\s+from\s+)?['"]([^'"]+)['"]/gm;
-  while ((match = importPattern.exec(code)) !== null) {
-    imports.push(match[1]);
-  }
-  const requirePattern = /require\s*\(\s*['"]([^'"]+)['"]\s*\)/gm;
-  while ((match = requirePattern.exec(code)) !== null) {
-    imports.push(match[1]);
-  }
-
-  // Extract exports
-  const exportPattern = /export\s+(?:default\s+)?(?:const|let|var|function|class|interface|type|enum)\s+(\w+)/gm;
-  while ((match = exportPattern.exec(code)) !== null) {
-    exports.push(match[1]);
-  }
-
-  // Calculate complexity
-  const nonEmptyLines = lines.filter(l => l.trim().length > 0).length;
-  const commentLines = lines.filter(l => /^\s*(\/\/|\/\*|\*|#)/.test(l)).length;
-  const decisionPoints = (code.match(/\b(if|else|for|while|switch|case|catch|&&|\|\||\?)\b/g) || []).length;
-
-  let cognitive = 0;
-  let nestingLevel = 0;
-  for (const line of lines) {
-    const opens = (line.match(/\{/g) || []).length;
-    const closes = (line.match(/\}/g) || []).length;
-    if (/\b(if|for|while|switch)\b/.test(line)) {
-      cognitive += 1 + nestingLevel;
-    }
-    nestingLevel = Math.max(0, nestingLevel + opens - closes);
-  }
-
-  // Detect language
-  const ext = path.extname(filePath).toLowerCase();
-  const language = ext === '.ts' || ext === '.tsx' ? 'typescript' :
-    ext === '.js' || ext === '.jsx' || ext === '.mjs' || ext === '.cjs' ? 'javascript' :
-    ext === '.py' ? 'python' : 'unknown';
-
-  return {
-    filePath,
-    language,
-    functions,
-    classes,
-    imports,
-    exports,
-    complexity: {
-      cyclomatic: decisionPoints + 1,
-      cognitive,
-      loc: nonEmptyLines,
-      commentDensity: lines.length > 0 ? commentLines / lines.length : 0,
-    },
-  };
-}
-
-// Dependencies subcommand
-const depsCommand: Command = {
-  name: 'deps',
-  description: 'Analyze project dependencies',
-  options: [
-    { name: 'outdated', short: 'o', type: 'boolean', description: 'Show only outdated dependencies' },
-    { name: 'security', short: 's', type: 'boolean', description: 'Check for security vulnerabilities' },
-    { name: 'format', short: 'f', type: 'string', description: 'Output format: text, json', default: 'text' },
-  ],
-  examples: [
-    { command: 'claude-flow analyze deps --outdated', description: 'Show outdated dependencies' },
-    { command: 'claude-flow analyze deps --security', description: 'Check for vulnerabilities' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const showOutdated = ctx.flags.outdated as boolean;
-    const checkSecurity = ctx.flags.security as boolean;
-    const formatJson = (ctx.flags.format as string) === 'json';
-
-    output.writeln();
-    output.writeln(output.bold('Dependency Analysis'));
-    output.writeln(output.dim('-'.repeat(50)));
-
-    try {
-      const pkgPath = resolve('package.json');
-      let pkgContent: string;
-      try {
-        pkgContent = await fs.readFile(pkgPath, 'utf-8');
-      } catch {
-        output.printError('No package.json found in current directory');
-        return { success: false, exitCode: 1 };
-      }
-
-      const pkg = JSON.parse(pkgContent);
-      const deps = Object.entries(pkg.dependencies || {}) as [string, string][];
-      const devDeps = Object.entries(pkg.devDependencies || {}) as [string, string][];
-      const optDeps = Object.entries(pkg.optionalDependencies || {}) as [string, string][];
-      const peerDeps = Object.entries(pkg.peerDependencies || {}) as [string, string][];
-      const total = deps.length + devDeps.length + optDeps.length + peerDeps.length;
-
-      if (formatJson && !showOutdated && !checkSecurity) {
-        const jsonData = { name: pkg.name, version: pkg.version, dependencies: deps.length, devDependencies: devDeps.length, optionalDependencies: optDeps.length, peerDependencies: peerDeps.length, total };
-        output.printJson(jsonData);
-        return { success: true, data: jsonData };
-      }
-
-      output.printBox(
-        [`Package: ${pkg.name || 'unknown'} @ ${pkg.version || '0.0.0'}`, `Dependencies: ${deps.length}`, `Dev Dependencies: ${devDeps.length}`, `Optional: ${optDeps.length}`, `Peer: ${peerDeps.length}`, `Total: ${total}`].join('\n'),
-        'Dependency Summary'
-      );
-
-      if (showOutdated) {
-        output.writeln();
-        output.writeln(output.bold('Outdated Check'));
-        output.writeln(output.dim('-'.repeat(60)));
-        const outdated: Array<{ name: string; declared: string; installed: string; category: string }> = [];
-
-        const checkDeps = async (entries: [string, string][], category: string) => {
-          for (const [name, declared] of entries) {
-            try {
-              const installedPkg = resolve('node_modules', name, 'package.json');
-              const raw = await fs.readFile(installedPkg, 'utf-8');
-              const installedContent = JSON.parse(raw) as { version?: string };
-              const installed = installedContent.version || 'unknown';
-              const cleanDeclared = (declared as string).replace(/^[\^~>=<]+/, '');
-              if (installed !== cleanDeclared) {
-                outdated.push({ name, declared: declared as string, installed, category });
-              }
-            } catch {
-              outdated.push({ name, declared: declared as string, installed: 'not installed', category });
-            }
-          }
-        };
-
-        await checkDeps(deps, 'prod');
-        await checkDeps(devDeps, 'dev');
-
-        if (outdated.length === 0) {
-          output.printSuccess('All dependencies match declared versions');
-        } else {
-          output.printTable({
-            columns: [
-              { key: 'name', header: 'Package', width: 30 },
-              { key: 'declared', header: 'Declared', width: 14 },
-              { key: 'installed', header: 'Installed', width: 14 },
-              { key: 'category', header: 'Type', width: 6 },
-            ],
-            data: outdated.slice(0, 30),
-          });
-          if (outdated.length > 30) {
-            output.writeln(output.dim(`  ... and ${outdated.length - 30} more`));
-          }
-        }
-      }
-
-      if (checkSecurity) {
-        output.writeln();
-        output.writeln(output.bold('Security Audit'));
-        output.writeln(output.dim('-'.repeat(60)));
-
-        try {
-          const auditRaw = execSync('npm audit --json 2>/dev/null', { encoding: 'utf-8', maxBuffer: 10 * 1024 * 1024 });
-          const audit = JSON.parse(auditRaw);
-          const vulns = audit.metadata?.vulnerabilities || audit.vulnerabilities || {};
-          const info = vulns.info || 0;
-          const low = vulns.low || 0;
-          const moderate = vulns.moderate || 0;
-          const high = vulns.high || 0;
-          const critical = vulns.critical || 0;
-          const totalVulns = info + low + moderate + high + critical;
-
-          if (totalVulns === 0) {
-            output.printSuccess('No known vulnerabilities found');
-          } else {
-            output.printTable({
-              columns: [
-                { key: 'severity', header: 'Severity', width: 12 },
-                { key: 'count', header: 'Count', width: 8, align: 'right' as const },
-              ],
-              data: [
-                ...(critical > 0 ? [{ severity: 'Critical', count: critical }] : []),
-                ...(high > 0 ? [{ severity: 'High', count: high }] : []),
-                ...(moderate > 0 ? [{ severity: 'Moderate', count: moderate }] : []),
-                ...(low > 0 ? [{ severity: 'Low', count: low }] : []),
-                ...(info > 0 ? [{ severity: 'Info', count: info }] : []),
-                { severity: 'Total', count: totalVulns },
-              ],
-            });
-            if (critical > 0 || high > 0) {
-              output.printWarning(`${critical + high} high/critical vulnerabilities found. Run 'npm audit' for details.`);
-            }
-          }
-        } catch {
-          output.printWarning('npm audit failed. Ensure npm is available and node_modules is installed.');
-        }
-      }
-
-      return { success: true };
-    } catch (error) {
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Dependency analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-// ============================================================================
-// Graph Analysis Subcommands (MinCut, Louvain, Circular Dependencies)
-// ============================================================================
-
-/**
- * Analyze code boundaries using MinCut algorithm
- */
-const boundariesCommand: Command = {
-  name: 'boundaries',
-  aliases: ['boundary', 'mincut'],
-  description: 'Find natural code boundaries using MinCut algorithm',
-  options: [
-    {
-      name: 'partitions',
-      short: 'p',
-      description: 'Number of partitions to find',
-      type: 'number',
-      default: 2,
-    },
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json, dot)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json', 'dot'],
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze boundaries src/', description: 'Find code boundaries in src/' },
-    { command: 'claude-flow analyze boundaries -p 3 src/', description: 'Find 3 partitions' },
-    { command: 'claude-flow analyze boundaries -f dot -o graph.dot src/', description: 'Export to DOT format' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetDir = ctx.args[0] || ctx.cwd;
-    const numPartitions = (ctx.flags.partitions as number) || 2;
-    const outputFile = ctx.flags.output as string | undefined;
-    const format = (ctx.flags.format as string) || 'text';
-
-    output.printInfo(`Analyzing code boundaries in: ${output.highlight(targetDir)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Building dependency graph...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const analyzer = await getGraphAnalyzer();
-      if (!analyzer) {
-        spinner.stop();
-        output.printError('Graph analyzer module not available');
-        return { success: false, exitCode: 1 };
-      }
-
-      const result = await analyzer.analyzeGraph(resolve(targetDir), {
-        includeBoundaries: true,
-        includeModules: false,
-        numPartitions,
-      });
-
-      spinner.stop();
-
-      // Handle different output formats
-      if (format === 'json') {
-        const jsonOutput = {
-          boundaries: result.boundaries,
-          statistics: result.statistics,
-          circularDependencies: result.circularDependencies,
-        };
-
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-
-        return { success: true, data: jsonOutput };
-      }
-
-      if (format === 'dot') {
-        const dotOutput = analyzer.exportToDot(result, {
-          includeLabels: true,
-          highlightCycles: true,
-        });
-
-        if (outputFile) {
-          await writeFile(outputFile, dotOutput);
-          output.printSuccess(`DOT graph written to ${outputFile}`);
-          output.writeln(output.dim('Visualize with: dot -Tpng -o graph.png ' + outputFile));
-        } else {
-          output.writeln(dotOutput);
-        }
-
-        return { success: true };
-      }
-
-      // Text format (default)
-      output.printBox(
-        [
-          `Files analyzed: ${result.statistics.nodeCount}`,
-          `Dependencies: ${result.statistics.edgeCount}`,
-          `Avg degree: ${result.statistics.avgDegree.toFixed(2)}`,
-          `Density: ${(result.statistics.density * 100).toFixed(2)}%`,
-          `Components: ${result.statistics.componentCount}`,
-        ].join('\n'),
-        'Graph Statistics'
-      );
-
-      if (result.boundaries && result.boundaries.length > 0) {
-        output.writeln();
-        output.writeln(output.bold('MinCut Boundaries'));
-        output.writeln();
-
-        for (let i = 0; i < result.boundaries.length; i++) {
-          const boundary = result.boundaries[i];
-          output.writeln(output.bold(`Boundary ${i + 1} (cut value: ${boundary.cutValue})`));
-          output.writeln();
-
-          output.writeln(output.dim('Partition 1:'));
-          const p1Display = boundary.partition1.slice(0, 10);
-          output.printList(p1Display);
-          if (boundary.partition1.length > 10) {
-            output.writeln(output.dim(`  ... and ${boundary.partition1.length - 10} more files`));
-          }
-
-          output.writeln();
-          output.writeln(output.dim('Partition 2:'));
-          const p2Display = boundary.partition2.slice(0, 10);
-          output.printList(p2Display);
-          if (boundary.partition2.length > 10) {
-            output.writeln(output.dim(`  ... and ${boundary.partition2.length - 10} more files`));
-          }
-
-          output.writeln();
-          output.writeln(output.success('Suggestion:'));
-          output.writeln(`  ${boundary.suggestion}`);
-          output.writeln();
-        }
-      }
-
-      // Show circular dependencies
-      if (result.circularDependencies.length > 0) {
-        output.writeln();
-        output.writeln(output.bold(output.warning('Circular Dependencies Detected')));
-        output.writeln();
-
-        for (const cycle of result.circularDependencies.slice(0, 5)) {
-          const severityColor = cycle.severity === 'high' ? output.error : cycle.severity === 'medium' ? output.warning : output.dim;
-          output.writeln(`${severityColor(`[${cycle.severity.toUpperCase()}]`)} ${cycle.cycle.join(' -> ')}`);
-          output.writeln(output.dim(`  ${cycle.suggestion}`));
-          output.writeln();
-        }
-
-        if (result.circularDependencies.length > 5) {
-          output.writeln(output.dim(`... and ${result.circularDependencies.length - 5} more cycles`));
-        }
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify(result, null, 2));
-        output.printSuccess(`Full results written to ${outputFile}`);
-      }
-
-      return { success: true, data: result };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Analyze modules/communities using Louvain algorithm
- */
-const modulesCommand: Command = {
-  name: 'modules',
-  aliases: ['communities', 'louvain'],
-  description: 'Detect module communities using Louvain algorithm',
-  options: [
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json, dot)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json', 'dot'],
-    },
-    {
-      name: 'min-size',
-      short: 'm',
-      description: 'Minimum community size to display',
-      type: 'number',
-      default: 2,
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze modules src/', description: 'Detect module communities' },
-    { command: 'claude-flow analyze modules -f dot -o modules.dot src/', description: 'Export colored DOT graph' },
-    { command: 'claude-flow analyze modules -m 3 src/', description: 'Only show communities with 3+ files' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetDir = ctx.args[0] || ctx.cwd;
-    const outputFile = ctx.flags.output as string | undefined;
-    const format = (ctx.flags.format as string) || 'text';
-    const minSize = (ctx.flags['min-size'] as number) || 2;
-
-    output.printInfo(`Detecting module communities in: ${output.highlight(targetDir)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Building dependency graph...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const analyzer = await getGraphAnalyzer();
-      if (!analyzer) {
-        spinner.stop();
-        output.printError('Graph analyzer module not available');
-        return { success: false, exitCode: 1 };
-      }
-
-      const result = await analyzer.analyzeGraph(resolve(targetDir), {
-        includeBoundaries: false,
-        includeModules: true,
-      });
-
-      spinner.stop();
-
-      // Filter communities by size
-      const communities = result.communities?.filter(c => c.members.length >= minSize) || [];
-
-      // Handle different output formats
-      if (format === 'json') {
-        const jsonOutput = {
-          communities,
-          statistics: result.statistics,
-        };
-
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-
-        return { success: true, data: jsonOutput };
-      }
-
-      if (format === 'dot') {
-        const dotOutput = analyzer.exportToDot(result, {
-          includeLabels: true,
-          colorByCommunity: true,
-          highlightCycles: true,
-        });
-
-        if (outputFile) {
-          await writeFile(outputFile, dotOutput);
-          output.printSuccess(`DOT graph written to ${outputFile}`);
-          output.writeln(output.dim('Visualize with: dot -Tpng -o modules.png ' + outputFile));
-        } else {
-          output.writeln(dotOutput);
-        }
-
-        return { success: true };
-      }
-
-      // Text format (default)
-      output.printBox(
-        [
-          `Files analyzed: ${result.statistics.nodeCount}`,
-          `Dependencies: ${result.statistics.edgeCount}`,
-          `Communities found: ${result.communities?.length || 0}`,
-          `Showing: ${communities.length} (min size: ${minSize})`,
-        ].join('\n'),
-        'Module Detection Results'
-      );
-
-      if (communities.length > 0) {
-        output.writeln();
-        output.writeln(output.bold('Detected Communities'));
-        output.writeln();
-
-        for (const community of communities.slice(0, 10)) {
-          const cohesionIndicator = community.cohesion > 0.5 ? output.success('High') :
-            community.cohesion > 0.2 ? output.warning('Medium') : output.dim('Low');
-
-          output.writeln(output.bold(`Community ${community.id}: ${community.suggestedName || 'unnamed'}`));
-          output.writeln(`  ${output.dim('Cohesion:')} ${cohesionIndicator} (${(community.cohesion * 100).toFixed(1)}%)`);
-          output.writeln(`  ${output.dim('Central node:')} ${community.centralNode || 'none'}`);
-          output.writeln(`  ${output.dim('Members:')} ${community.members.length} files`);
-
-          const displayMembers = community.members.slice(0, 5);
-          for (const member of displayMembers) {
-            output.writeln(`    - ${member}`);
-          }
-          if (community.members.length > 5) {
-            output.writeln(output.dim(`    ... and ${community.members.length - 5} more`));
-          }
-          output.writeln();
-        }
-
-        if (communities.length > 10) {
-          output.writeln(output.dim(`... and ${communities.length - 10} more communities`));
-        }
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify(result, null, 2));
-        output.printSuccess(`Full results written to ${outputFile}`);
-      }
-
-      return { success: true, data: result };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Build and export dependency graph
- */
-const dependenciesCommand: Command = {
-  name: 'dependencies',
-  aliases: ['graph'],
-  description: 'Build and export full dependency graph',
-  options: [
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json, dot)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json', 'dot'],
-    },
-    {
-      name: 'include',
-      short: 'i',
-      description: 'File extensions to include (comma-separated)',
-      type: 'string',
-      default: '.ts,.tsx,.js,.jsx,.mjs,.cjs',
-    },
-    {
-      name: 'exclude',
-      short: 'e',
-      description: 'Patterns to exclude (comma-separated)',
-      type: 'string',
-      default: 'node_modules,dist,build,.git',
-    },
-    {
-      name: 'depth',
-      short: 'd',
-      description: 'Maximum directory depth',
-      type: 'number',
-      default: 10,
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze dependencies src/', description: 'Build dependency graph' },
-    { command: 'claude-flow analyze dependencies -f dot -o deps.dot src/', description: 'Export to DOT' },
-    { command: 'claude-flow analyze dependencies -i .ts,.tsx src/', description: 'Only TypeScript files' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetDir = ctx.args[0] || ctx.cwd;
-    const outputFile = ctx.flags.output as string | undefined;
-    const format = (ctx.flags.format as string) || 'text';
-    const include = ((ctx.flags.include as string) || '.ts,.tsx,.js,.jsx,.mjs,.cjs').split(',');
-    const exclude = ((ctx.flags.exclude as string) || 'node_modules,dist,build,.git').split(',');
-    const maxDepth = (ctx.flags.depth as number) || 10;
-
-    output.printInfo(`Building dependency graph for: ${output.highlight(targetDir)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Scanning files...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const analyzer = await getGraphAnalyzer();
-      if (!analyzer) {
-        spinner.stop();
-        output.printError('Graph analyzer module not available');
-        return { success: false, exitCode: 1 };
-      }
-
-      const graph = await analyzer.buildDependencyGraph(resolve(targetDir), {
-        include,
-        exclude,
-        maxDepth,
-      });
-
-      spinner.stop();
-
-      // Detect circular dependencies
-      const circularDeps = analyzer.detectCircularDependencies(graph);
-
-      // Handle different output formats
-      if (format === 'json') {
-        const jsonOutput = {
-          nodes: Array.from(graph.nodes.values()),
-          edges: graph.edges,
-          metadata: graph.metadata,
-          circularDependencies: circularDeps,
-        };
-
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Graph written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-
-        return { success: true, data: jsonOutput };
-      }
-
-      if (format === 'dot') {
-        const result = { graph, circularDependencies: circularDeps, statistics: {
-          nodeCount: graph.nodes.size,
-          edgeCount: graph.edges.length,
-          avgDegree: 0,
-          maxDegree: 0,
-          density: 0,
-          componentCount: 0,
-        }};
-
-        const dotOutput = analyzer.exportToDot(result, {
-          includeLabels: true,
-          highlightCycles: true,
-        });
-
-        if (outputFile) {
-          await writeFile(outputFile, dotOutput);
-          output.printSuccess(`DOT graph written to ${outputFile}`);
-          output.writeln(output.dim('Visualize with: dot -Tpng -o deps.png ' + outputFile));
-        } else {
-          output.writeln(dotOutput);
-        }
-
-        return { success: true };
-      }
-
-      // Text format (default)
-      output.printBox(
-        [
-          `Files: ${graph.metadata.totalFiles}`,
-          `Dependencies: ${graph.metadata.totalEdges}`,
-          `Build time: ${graph.metadata.buildTime}ms`,
-          `Root: ${graph.metadata.rootDir}`,
-        ].join('\n'),
-        'Dependency Graph'
-      );
-
-      // Show top files by imports
-      output.writeln();
-      output.writeln(output.bold('Most Connected Files'));
-      output.writeln();
-
-      const nodesByDegree = Array.from(graph.nodes.values())
-        .map(n => ({
-          ...n,
-          degree: graph.edges.filter(e => e.source === n.id || e.target === n.id).length,
-        }))
-        .sort((a, b) => b.degree - a.degree)
-        .slice(0, 10);
-
-      output.printTable({
-        columns: [
-          { key: 'path', header: 'File', width: 50 },
-          { key: 'degree', header: 'Connections', width: 12, align: 'right' },
-          { key: 'complexity', header: 'Complexity', width: 12, align: 'right' },
-        ],
-        data: nodesByDegree.map(n => ({
-          path: n.path.length > 48 ? '...' + n.path.slice(-45) : n.path,
-          degree: n.degree,
-          complexity: n.complexity || 0,
-        })),
-      });
-
-      // Show circular dependencies
-      if (circularDeps.length > 0) {
-        output.writeln();
-        output.writeln(output.bold(output.warning(`Circular Dependencies: ${circularDeps.length}`)));
-        output.writeln();
-
-        for (const cycle of circularDeps.slice(0, 3)) {
-          output.writeln(`  ${cycle.cycle.join(' -> ')}`);
-        }
-        if (circularDeps.length > 3) {
-          output.writeln(output.dim(`  ... and ${circularDeps.length - 3} more`));
-        }
-      }
-
-      if (outputFile) {
-        const fullOutput = {
-          nodes: Array.from(graph.nodes.values()),
-          edges: graph.edges,
-          metadata: graph.metadata,
-          circularDependencies: circularDeps,
-        };
-        await writeFile(outputFile, JSON.stringify(fullOutput, null, 2));
-        output.printSuccess(`Full results written to ${outputFile}`);
-      }
-
-      return { success: true };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-/**
- * Detect circular dependencies
- */
-const circularCommand: Command = {
-  name: 'circular',
-  aliases: ['cycles'],
-  description: 'Detect circular dependencies in codebase',
-  options: [
-    {
-      name: 'output',
-      short: 'o',
-      description: 'Output file path',
-      type: 'string',
-    },
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format (text, json)',
-      type: 'string',
-      default: 'text',
-      choices: ['text', 'json'],
-    },
-    {
-      name: 'severity',
-      short: 's',
-      description: 'Minimum severity to show (low, medium, high)',
-      type: 'string',
-      default: 'low',
-      choices: ['low', 'medium', 'high'],
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze circular src/', description: 'Find circular dependencies' },
-    { command: 'claude-flow analyze circular -s high src/', description: 'Only high severity cycles' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    const targetDir = ctx.args[0] || ctx.cwd;
-    const outputFile = ctx.flags.output as string | undefined;
-    const format = (ctx.flags.format as string) || 'text';
-    const minSeverity = (ctx.flags.severity as string) || 'low';
-
-    output.printInfo(`Detecting circular dependencies in: ${output.highlight(targetDir)}`);
-    output.writeln();
-
-    const spinner = output.createSpinner({ text: 'Analyzing dependencies...', spinner: 'dots' });
-    spinner.start();
-
-    try {
-      const analyzer = await getGraphAnalyzer();
-      if (!analyzer) {
-        spinner.stop();
-        output.printError('Graph analyzer module not available');
-        return { success: false, exitCode: 1 };
-      }
-
-      const graph = await analyzer.buildDependencyGraph(resolve(targetDir));
-      const cycles = analyzer.detectCircularDependencies(graph);
-
-      spinner.stop();
-
-      // Filter by severity
-      const severityOrder = { low: 0, medium: 1, high: 2 };
-      const minLevel = severityOrder[minSeverity as keyof typeof severityOrder] || 0;
-      const filtered = cycles.filter(c => severityOrder[c.severity] >= minLevel);
-
-      if (format === 'json') {
-        const jsonOutput = { cycles: filtered, total: cycles.length, filtered: filtered.length };
-
-        if (outputFile) {
-          await writeFile(outputFile, JSON.stringify(jsonOutput, null, 2));
-          output.printSuccess(`Results written to ${outputFile}`);
-        } else {
-          output.printJson(jsonOutput);
-        }
-
-        return { success: true, data: jsonOutput };
-      }
-
-      // Text format
-      if (filtered.length === 0) {
-        output.printSuccess('No circular dependencies found!');
-        return { success: true };
-      }
-
-      output.printBox(
-        [
-          `Total cycles: ${cycles.length}`,
-          `Shown (${minSeverity}+): ${filtered.length}`,
-          `High severity: ${cycles.filter(c => c.severity === 'high').length}`,
-          `Medium severity: ${cycles.filter(c => c.severity === 'medium').length}`,
-          `Low severity: ${cycles.filter(c => c.severity === 'low').length}`,
-        ].join('\n'),
-        'Circular Dependencies'
-      );
-
-      output.writeln();
-
-      // Group by severity
-      const grouped = {
-        high: filtered.filter(c => c.severity === 'high'),
-        medium: filtered.filter(c => c.severity === 'medium'),
-        low: filtered.filter(c => c.severity === 'low'),
-      };
-
-      for (const [severity, items] of Object.entries(grouped)) {
-        if (items.length === 0) continue;
-
-        const color = severity === 'high' ? output.error : severity === 'medium' ? output.warning : output.dim;
-        output.writeln(color(output.bold(`${severity.toUpperCase()} SEVERITY (${items.length})`)));
-        output.writeln();
-
-        for (const cycle of items.slice(0, 5)) {
-          output.writeln(`  ${cycle.cycle.join(' -> ')}`);
-          output.writeln(output.dim(`  Fix: ${cycle.suggestion}`));
-          output.writeln();
-        }
-
-        if (items.length > 5) {
-          output.writeln(output.dim(`  ... and ${items.length - 5} more ${severity} cycles`));
-          output.writeln();
-        }
-      }
-
-      if (outputFile) {
-        await writeFile(outputFile, JSON.stringify({ cycles: filtered }, null, 2));
-        output.printSuccess(`Results written to ${outputFile}`);
-      }
-
-      return { success: true, data: { cycles: filtered } };
-    } catch (error) {
-      spinner.stop();
-      const message = error instanceof Error ? error.message : String(error);
-      output.printError(`Analysis failed: ${message}`);
-      return { success: false, exitCode: 1 };
-    }
-  },
-};
-
-// Helper functions
-function getRiskDisplay(risk: string): string {
-  switch (risk) {
-    case 'critical':
-      return output.color(output.bold('CRITICAL'), 'bgRed' as never, 'white' as never);
-    case 'high-risk':
-      return output.error('HIGH');
-    case 'medium-risk':
-      return output.warning('MEDIUM');
-    case 'low-risk':
-      return output.success('LOW');
-    default:
-      return risk;
-  }
-}
-
-function getStatusDisplay(status: string): string {
-  switch (status) {
-    case 'added':
-      return output.success('A');
-    case 'modified':
-      return output.warning('M');
-    case 'deleted':
-      return output.error('D');
-    case 'renamed':
-      return output.info('R');
-    default:
-      return status;
-  }
-}
-
-// Main analyze command
-export const analyzeCommand: Command = {
-  name: 'analyze',
-  description: 'Code analysis, diff classification, graph boundaries, and change risk assessment',
-  aliases: ['an'],
-  subcommands: [
-    diffCommand,
-    codeCommand,
-    depsCommand,
-    astCommand,
-    complexityAstCommand,
-    symbolsCommand,
-    importsCommand,
-    boundariesCommand,
-    modulesCommand,
-    dependenciesCommand,
-    circularCommand,
-  ],
-  options: [
-    {
-      name: 'format',
-      short: 'f',
-      description: 'Output format: text, json, table',
-      type: 'string',
-      default: 'text',
-    },
-  ],
-  examples: [
-    { command: 'claude-flow analyze ast src/', description: 'Analyze code with AST parsing' },
-    { command: 'claude-flow analyze complexity src/ --threshold 15', description: 'Find high-complexity files' },
-    { command: 'claude-flow analyze symbols src/ --type function', description: 'Extract all functions' },
-    { command: 'claude-flow analyze imports src/ --external', description: 'List npm dependencies' },
-    { command: 'claude-flow analyze diff --risk', description: 'Analyze diff with risk assessment' },
-    { command: 'claude-flow analyze boundaries src/', description: 'Find code boundaries using MinCut' },
-    { command: 'claude-flow analyze modules src/', description: 'Detect module communities with Louvain' },
-    { command: 'claude-flow analyze dependencies src/ --format dot', description: 'Export dependency graph as DOT' },
-    { command: 'claude-flow analyze circular src/', description: 'Find circular dependencies' },
-    { command: 'claude-flow analyze deps --security', description: 'Check dependency vulnerabilities' },
-  ],
-  action: async (ctx: CommandContext): Promise<CommandResult> => {
-    // If no subcommand, show help
-    output.writeln();
-    output.writeln(output.bold('Analyze Commands'));
-    output.writeln(output.dim('-'.repeat(50)));
-    output.writeln();
-
-    output.writeln(output.bold('Available subcommands:'));
-    output.writeln();
-    output.writeln(`  ${output.highlight('diff')}         Analyze git diff for change risk and classification`);
-    output.writeln(`  ${output.highlight('code')}         Static code analysis and quality assessment`);
-    output.writeln(`  ${output.highlight('deps')}         Analyze project dependencies`);
-    output.writeln(`  ${output.highlight('ast')}          AST analysis with symbol extraction and complexity`);
-    output.writeln(`  ${output.highlight('complexity')}   Analyze cyclomatic and cognitive complexity`);
-    output.writeln(`  ${output.highlight('symbols')}      Extract functions, classes, and types`);
-    output.writeln(`  ${output.highlight('imports')}      Analyze import dependencies`);
-    output.writeln(`  ${output.highlight('boundaries')}   Find code boundaries using MinCut algorithm`);
-    output.writeln(`  ${output.highlight('modules')}      Detect module communities using Louvain algorithm`);
-    output.writeln(`  ${output.highlight('dependencies')} Build and export full dependency graph`);
-    output.writeln(`  ${output.highlight('circular')}     Detect circular dependencies in codebase`);
-    output.writeln();
-
-    output.writeln(output.bold('AST Analysis Examples:'));
-    output.writeln();
-    output.writeln(`  ${output.dim('claude-flow analyze ast src/')}                  # Full AST analysis`);
-    output.writeln(`  ${output.dim('claude-flow analyze ast src/index.ts -c')}       # Include complexity`);
-    output.writeln(`  ${output.dim('claude-flow analyze complexity src/ -t 15')}     # Flag high complexity`);
-    output.writeln(`  ${output.dim('claude-flow analyze symbols src/ --type fn')}    # Extract functions`);
-    output.writeln(`  ${output.dim('claude-flow analyze imports src/ --external')}   # Only npm imports`);
-    output.writeln();
-
-    output.writeln(output.bold('Graph Analysis Examples:'));
-    output.writeln();
-    output.writeln(`  ${output.dim('claude-flow analyze boundaries src/')}            # Find natural code boundaries`);
-    output.writeln(`  ${output.dim('claude-flow analyze modules src/')}               # Detect module communities`);
-    output.writeln(`  ${output.dim('claude-flow analyze dependencies -f dot src/')}   # Export to DOT format`);
-    output.writeln(`  ${output.dim('claude-flow analyze circular src/')}              # Find circular deps`);
-    output.writeln();
-
-    output.writeln(output.bold('Diff Analysis Examples:'));
-    output.writeln();
-    output.writeln(`  ${output.dim('claude-flow analyze diff --risk')}              # Risk assessment`);
-    output.writeln(`  ${output.dim('claude-flow analyze diff HEAD~1 --classify')}   # Classify changes`);
-    output.writeln(`  ${output.dim('claude-flow analyze diff main..feature')}       # Compare branches`);
-    output.writeln();
-
-    return { success: true };
-  },
-};
-
-export default analyzeCommand;