claude-flow 3.10.1 → 3.10.4

package/.claude/worktrees/adr-120-impl/v3/plugins/prime-radiant/src/plugin.ts

@@ -1,1325 +0,0 @@
-/**
- * Prime Radiant Plugin - Main Plugin Class
- *
- * PrimeRadiantPlugin class implementing the IPlugin interface:
- * - register(): Register with claude-flow plugin system
- * - initialize(): Load WASM bundle, set up engines
- * - shutdown(): Cleanup WASM resources
- *
- * Integrates the 92KB WASM bundle for mathematical AI interpretability.
- *
- * @module prime-radiant/plugin
- * @version 0.1.3
- */
-
-import type {
-  IPlugin,
-  IPrimeRadiantBridge,
-  ICoherenceGate,
-  PluginContext,
-  PluginMCPTool,
-  PluginHook,
-  HookPriority,
-  IResultCache,
-} from './interfaces.js';
-
-import type {
-  PrimeRadiantConfig,
-  CoherenceCheckResult,
-  SpectralAnalysisResult,
-  CausalInferenceResult,
-  TopologyResult,
-  ConsensusResult,
-  MemoryEntry,
-  MemoryCoherenceValidation,
-  CoherenceThresholds,
-  CoherenceAction,
-  CausalGraph,
-} from './types.js';
-
-import { DEFAULT_CONFIG, PrimeRadiantErrorCodes } from './types.js';
-
-import {
-  validateCoherenceInput,
-  validateSpectralInput,
-  validateCausalInput,
-  validateConsensusInput,
-  validateTopologyInput,
-  validateMemoryGateInput,
-  validateConfig,
-} from './schemas.js';
-
-// ============================================================================
-// WASM Bridge Implementation
-// ============================================================================
-
-/**
- * Bridge to the Prime Radiant WASM module
- * Manages the 92KB bundle and engine instances
- */
-class PrimeRadiantBridge implements IPrimeRadiantBridge {
-  private initialized = false;
-  private wasmModule: unknown = null;
-
-  // Engine instances (will be created from WASM)
-  private cohomologyEngine: unknown = null;
-  private spectralEngine: unknown = null;
-  private causalEngine: unknown = null;
-  private quantumEngine: unknown = null;
-  private categoryEngine: unknown = null;
-  private hottEngine: unknown = null;
-
-  async initialize(): Promise<void> {
-    if (this.initialized) return;
-
-    try {
-      // Dynamic import of the WASM module
-      // In production, this would load from 'prime-radiant-advanced-wasm'
-      // For scaffold, we create mock implementations
-      const wasmModule = await this.loadWasmModule();
-      this.wasmModule = wasmModule;
-
-      // Create engine instances
-      this.cohomologyEngine = this.createCohomologyEngine();
-      this.spectralEngine = this.createSpectralEngine();
-      this.causalEngine = this.createCausalEngine();
-      this.quantumEngine = this.createQuantumEngine();
-      this.categoryEngine = this.createCategoryEngine();
-      this.hottEngine = this.createHottEngine();
-
-      this.initialized = true;
-    } catch (error) {
-      throw new Error(
-        `Failed to initialize WASM module: ${error instanceof Error ? error.message : 'Unknown error'}`
-      );
-    }
-  }
-
-  isInitialized(): boolean {
-    return this.initialized;
-  }
-
-  async dispose(): Promise<void> {
-    // Cleanup WASM resources
-    this.cohomologyEngine = null;
-    this.spectralEngine = null;
-    this.causalEngine = null;
-    this.quantumEngine = null;
-    this.categoryEngine = null;
-    this.hottEngine = null;
-    this.wasmModule = null;
-    this.initialized = false;
-  }
-
-  private ensureInitialized(): void {
-    if (!this.initialized) {
-      throw new Error(PrimeRadiantErrorCodes.WASM_NOT_INITIALIZED);
-    }
-  }
-
-  /**
-   * Load the WASM module
-   * In production, this loads from 'prime-radiant-advanced-wasm'
-   */
-  private async loadWasmModule(): Promise<unknown> {
-    // Attempt to load the actual WASM module
-    try {
-      const module = await import('prime-radiant-advanced-wasm');
-      if (module.default) {
-        await module.default();
-      }
-      return module;
-    } catch {
-      // Fallback to mock implementation for development
-      console.warn('[Prime Radiant] WASM module not found, using mock implementation');
-      return { mock: true };
-    }
-  }
-
-  // Engine creation methods (scaffold implementations)
-  private createCohomologyEngine(): unknown {
-    return {
-      computeSheafLaplacianEnergy: (vectors: Float32Array[]): number => {
-        // Scaffold: compute simple variance-based coherence
-        if (vectors.length < 2) return 0;
-        const avgDist = this.computeAverageDistance(vectors);
-        return Math.min(1, avgDist);
-      },
-      detectContradictions: (vectors: Float32Array[]): string[] => {
-        const violations: string[] = [];
-        for (let i = 0; i < vectors.length; i++) {
-          for (let j = i + 1; j < vectors.length; j++) {
-            const dist = this.cosineSimilarity(vectors[i], vectors[j]);
-            if (dist < 0.3) {
-              violations.push(`Vectors ${i} and ${j} show significant divergence`);
-            }
-          }
-        }
-        return violations;
-      },
-    };
-  }
-
-  private createSpectralEngine(): unknown {
-    return {
-      computeEigenvalues: (matrix: Float32Array): Float32Array => {
-        // Scaffold: simplified eigenvalue computation
-        const n = Math.sqrt(matrix.length);
-        const eigenvalues = new Float32Array(n);
-        for (let i = 0; i < n; i++) {
-          eigenvalues[i] = matrix[i * n + i]; // Diagonal approximation
-        }
-        eigenvalues.sort((a, b) => b - a);
-        return eigenvalues;
-      },
-      computeSpectralGap: (eigenvalues: Float32Array): number => {
-        if (eigenvalues.length < 2) return 1;
-        return Math.abs(eigenvalues[0] - eigenvalues[1]);
-      },
-      computeStabilityIndex: (eigenvalues: Float32Array): number => {
-        if (eigenvalues.length === 0) return 1;
-        const max = Math.abs(eigenvalues[0]);
-        if (max === 0) return 1;
-        return 1 / (1 + max);
-      },
-    };
-  }
-
-  private createCausalEngine(): unknown {
-    return {
-      estimateEffect: (_treatment: string, _outcome: string, _graph: CausalGraph): number => {
-        // Scaffold: return mock effect
-        return 0.5;
-      },
-      identifyConfounders: (
-        treatment: string,
-        outcome: string,
-        graph: CausalGraph
-      ): string[] => {
-        // Find nodes that point to both treatment and outcome
-        const confounders: string[] = [];
-        for (const node of graph.nodes) {
-          if (node === treatment || node === outcome) continue;
-          const pointsToTreatment = graph.edges.some(
-            (e) => e[0] === node && e[1] === treatment
-          );
-          const pointsToOutcome = graph.edges.some((e) => e[0] === node && e[1] === outcome);
-          if (pointsToTreatment && pointsToOutcome) {
-            confounders.push(node);
-          }
-        }
-        return confounders;
-      },
-      findBackdoorPaths: (
-        treatment: string,
-        outcome: string,
-        graph: CausalGraph
-      ): string[] => {
-        // Scaffold: simplified backdoor path detection
-        const paths: string[] = [];
-        for (const edge of graph.edges) {
-          if (edge[1] === treatment && edge[0] !== outcome) {
-            paths.push(`${edge[0]} -> ${treatment} <- ... -> ${outcome}`);
-          }
-        }
-        return paths;
-      },
-      validateIntervention: (treatment: string, graph: CausalGraph): boolean => {
-        return graph.nodes.includes(treatment);
-      },
-    };
-  }
-
-  private createQuantumEngine(): unknown {
-    return {
-      computeBettiNumbers: (points: Float32Array[], maxDimension: number): Uint32Array => {
-        // Scaffold: simplified Betti number computation
-        const betti = new Uint32Array(maxDimension + 1);
-        betti[0] = 1; // One connected component
-        if (points.length > 3) betti[1] = Math.floor(points.length / 4);
-        if (maxDimension >= 2 && points.length > 10) betti[2] = 1;
-        return betti;
-      },
-      computePersistenceDiagram: (points: Float32Array[]): Array<[number, number]> => {
-        // Scaffold: mock persistence diagram
-        return points.slice(0, 5).map((_, i) => [i * 0.1, (i + 1) * 0.2] as [number, number]);
-      },
-      countHomologyClasses: (points: Float32Array[], _dimension: number): number => {
-        return Math.max(1, Math.floor(points.length / 5));
-      },
-    };
-  }
-
-  private createCategoryEngine(): unknown {
-    return {
-      validateMorphism: (_source: unknown, _target: unknown, morphism: string): boolean => {
-        return morphism.length > 0;
-      },
-      applyMorphism: (source: unknown, _morphism: string): unknown => {
-        return source;
-      },
-      isNaturalTransformation: (_morphism: string): boolean => {
-        return true;
-      },
-    };
-  }
-
-  private createHottEngine(): unknown {
-    return {
-      verifyProof: (_proposition: string, _proof: string): boolean => {
-        return true;
-      },
-      inferType: (term: string): string => {
-        return `Type(${term})`;
-      },
-      normalize: (term: string): string => {
-        return term.toLowerCase().replace(/\s+/g, ' ').trim();
-      },
-    };
-  }
-
-  // Helper methods
-  private computeAverageDistance(vectors: Float32Array[]): number {
-    if (vectors.length < 2) return 0;
-    let totalDist = 0;
-    let count = 0;
-    for (let i = 0; i < vectors.length; i++) {
-      for (let j = i + 1; j < vectors.length; j++) {
-        totalDist += 1 - this.cosineSimilarity(vectors[i], vectors[j]);
-        count++;
-      }
-    }
-    return count > 0 ? totalDist / count : 0;
-  }
-
-  private cosineSimilarity(a: Float32Array, b: Float32Array): number {
-    let dotProduct = 0;
-    let normA = 0;
-    let normB = 0;
-    const len = Math.min(a.length, b.length);
-    for (let i = 0; i < len; i++) {
-      dotProduct += a[i] * b[i];
-      normA += a[i] * a[i];
-      normB += b[i] * b[i];
-    }
-    const denom = Math.sqrt(normA) * Math.sqrt(normB);
-    return denom > 0 ? dotProduct / denom : 0;
-  }
-
-  // Public API methods
-  async checkCoherence(vectors: Float32Array[]): Promise<CoherenceCheckResult> {
-    this.ensureInitialized();
-    const engine = this.cohomologyEngine as {
-      computeSheafLaplacianEnergy: (v: Float32Array[]) => number;
-      detectContradictions: (v: Float32Array[]) => string[];
-    };
-
-    const energy = engine.computeSheafLaplacianEnergy(vectors);
-    const violations = engine.detectContradictions(vectors);
-
-    return {
-      coherent: energy < 0.3,
-      energy,
-      violations,
-      confidence: 1 - energy,
-    };
-  }
-
-  async analyzeSpectral(adjacencyMatrix: Float32Array): Promise<SpectralAnalysisResult> {
-    this.ensureInitialized();
-    const engine = this.spectralEngine as {
-      computeEigenvalues: (m: Float32Array) => Float32Array;
-      computeSpectralGap: (e: Float32Array) => number;
-      computeStabilityIndex: (e: Float32Array) => number;
-    };
-
-    const eigenvalues = engine.computeEigenvalues(adjacencyMatrix);
-    const spectralGap = engine.computeSpectralGap(eigenvalues);
-    const stabilityIndex = engine.computeStabilityIndex(eigenvalues);
-
-    return {
-      stable: spectralGap > 0.1,
-      eigenvalues: Array.from(eigenvalues),
-      spectralGap,
-      stabilityIndex,
-    };
-  }
-
-  async inferCausal(
-    treatment: string,
-    outcome: string,
-    graph: CausalGraph
-  ): Promise<CausalInferenceResult> {
-    this.ensureInitialized();
-    const engine = this.causalEngine as {
-      estimateEffect: (t: string, o: string, g: CausalGraph) => number;
-      identifyConfounders: (t: string, o: string, g: CausalGraph) => string[];
-      findBackdoorPaths: (t: string, o: string, g: CausalGraph) => string[];
-      validateIntervention: (t: string, g: CausalGraph) => boolean;
-    };
-
-    return {
-      effect: engine.estimateEffect(treatment, outcome, graph),
-      confounders: engine.identifyConfounders(treatment, outcome, graph),
-      backdoorPaths: engine.findBackdoorPaths(treatment, outcome, graph),
-      interventionValid: engine.validateIntervention(treatment, graph),
-    };
-  }
-
-  async computeTopology(points: Float32Array[], dimension: number): Promise<TopologyResult> {
-    this.ensureInitialized();
-    const engine = this.quantumEngine as {
-      computeBettiNumbers: (p: Float32Array[], d: number) => Uint32Array;
-      computePersistenceDiagram: (p: Float32Array[]) => Array<[number, number]>;
-      countHomologyClasses: (p: Float32Array[], d: number) => number;
-    };
-
-    const rawDiagram = engine.computePersistenceDiagram(points);
-    const persistencePoints = rawDiagram.map(([birth, death], i) => ({
-      birth,
-      death,
-      persistence: death - birth,
-      dimension: i % 2, // Simplified dimension assignment
-    }));
-
-    return {
-      bettiNumbers: Array.from(engine.computeBettiNumbers(points, dimension)),
-      persistenceDiagram: {
-        points: persistencePoints,
-        maxPersistence: Math.max(...persistencePoints.map(p => p.persistence), 0),
-        totalPersistence: persistencePoints.reduce((sum, p) => sum + p.persistence, 0),
-      },
-      homologyClasses: engine.countHomologyClasses(points, dimension),
-    };
-  }
-
-  async applyMorphism(
-    source: unknown,
-    target: unknown,
-    morphism: string
-  ): Promise<{ valid: boolean; result: unknown; naturalTransformation: boolean }> {
-    this.ensureInitialized();
-    const engine = this.categoryEngine as {
-      validateMorphism: (s: unknown, t: unknown, m: string) => boolean;
-      applyMorphism: (s: unknown, m: string) => unknown;
-      isNaturalTransformation: (m: string) => boolean;
-    };
-
-    const valid = engine.validateMorphism(source, target, morphism);
-    return {
-      valid,
-      result: valid ? engine.applyMorphism(source, morphism) : null,
-      naturalTransformation: engine.isNaturalTransformation(morphism),
-    };
-  }
-
-  async verifyTypeProof(
-    proposition: string,
-    proof: string
-  ): Promise<{ valid: boolean; type: string; normalForm: string }> {
-    this.ensureInitialized();
-    const engine = this.hottEngine as {
-      verifyProof: (p: string, pr: string) => boolean;
-      inferType: (t: string) => string;
-      normalize: (t: string) => string;
-    };
-
-    return {
-      valid: engine.verifyProof(proposition, proof),
-      type: engine.inferType(proof),
-      normalForm: engine.normalize(proof),
-    };
-  }
-}
-
-// ============================================================================
-// Coherence Gate Implementation
-// ============================================================================
-
-/**
- * Coherence Gate - validates memory entries for contradictions
- */
-class CoherenceGate implements ICoherenceGate {
-  private bridge: IPrimeRadiantBridge;
-  private thresholds: CoherenceThresholds = {
-    reject: 0.7,
-    warn: 0.3,
-    allow: 0.3,
-  };
-
-  constructor(bridge: IPrimeRadiantBridge) {
-    this.bridge = bridge;
-  }
-
-  async validate(
-    entry: MemoryEntry,
-    existingContext?: MemoryEntry[]
-  ): Promise<MemoryCoherenceValidation> {
-    const vectors: Float32Array[] = [entry.embedding];
-
-    if (existingContext?.length) {
-      vectors.push(...existingContext.map((e) => e.embedding));
-    }
-
-    const coherenceResult = await this.bridge.checkCoherence(vectors);
-
-    let action: CoherenceAction;
-    if (coherenceResult.energy >= this.thresholds.reject) {
-      action = 'reject';
-    } else if (coherenceResult.energy >= this.thresholds.warn) {
-      action = 'warn';
-    } else {
-      action = 'allow';
-    }
-
-    return {
-      entry,
-      existingContext,
-      coherenceResult,
-      action,
-    };
-  }
-
-  async validateBatch(entries: MemoryEntry[]): Promise<MemoryCoherenceValidation[]> {
-    const results: MemoryCoherenceValidation[] = [];
-    const processed: MemoryEntry[] = [];
-
-    for (const entry of entries) {
-      const validation = await this.validate(entry, processed);
-      results.push(validation);
-      if (validation.action !== 'reject') {
-        processed.push(entry);
-      }
-    }
-
-    return results;
-  }
-
-  setThresholds(thresholds: Partial<CoherenceThresholds>): void {
-    this.thresholds = { ...this.thresholds, ...thresholds };
-  }
-
-  getThresholds(): CoherenceThresholds {
-    return { ...this.thresholds };
-  }
-}
-
-// ============================================================================
-// LRU Cache Implementation
-// ============================================================================
-
-/**
- * Simple LRU Cache with TTL
- */
-class ResultCache<T> implements IResultCache<T> {
-  private cache = new Map<string, { value: T; expiry: number }>();
-  private maxSize: number;
-  private defaultTTL: number;
-  private hits = 0;
-  private misses = 0;
-
-  constructor(maxSize: number = 1000, defaultTTL: number = 60000) {
-    this.maxSize = maxSize;
-    this.defaultTTL = defaultTTL;
-  }
-
-  get(key: string): T | undefined {
-    const entry = this.cache.get(key);
-    if (!entry) {
-      this.misses++;
-      return undefined;
-    }
-    if (Date.now() > entry.expiry) {
-      this.cache.delete(key);
-      this.misses++;
-      return undefined;
-    }
-    this.hits++;
-    // Move to end (most recently used)
-    this.cache.delete(key);
-    this.cache.set(key, entry);
-    return entry.value;
-  }
-
-  set(key: string, value: T, ttl?: number): void {
-    if (this.cache.size >= this.maxSize) {
-      // Remove oldest (first) entry
-      const firstKey = this.cache.keys().next().value;
-      if (firstKey !== undefined) {
-        this.cache.delete(firstKey);
-      }
-    }
-    this.cache.set(key, {
-      value,
-      expiry: Date.now() + (ttl ?? this.defaultTTL),
-    });
-  }
-
-  has(key: string): boolean {
-    const entry = this.cache.get(key);
-    if (!entry) return false;
-    if (Date.now() > entry.expiry) {
-      this.cache.delete(key);
-      return false;
-    }
-    return true;
-  }
-
-  delete(key: string): void {
-    this.cache.delete(key);
-  }
-
-  clear(): void {
-    this.cache.clear();
-    this.hits = 0;
-    this.misses = 0;
-  }
-
-  getStats(): { size: number; hits: number; misses: number; hitRate: number } {
-    const total = this.hits + this.misses;
-    return {
-      size: this.cache.size,
-      hits: this.hits,
-      misses: this.misses,
-      hitRate: total > 0 ? this.hits / total : 0,
-    };
-  }
-}
-
-// ============================================================================
-// Plugin Class
-// ============================================================================
-
-/**
- * Prime Radiant Plugin for Claude Flow V3
- *
- * Provides mathematical AI interpretability capabilities:
- * - Sheaf Laplacian coherence detection
- * - Spectral stability analysis
- * - Do-calculus causal inference
- * - Quantum topology computation
- * - Category theory morphisms
- * - Homotopy Type Theory proofs
- */
-export class PrimeRadiantPlugin implements IPlugin {
-  readonly name = 'prime-radiant';
-  readonly version = '0.1.3';
-  readonly description =
-    'Mathematical AI interpretability with sheaf cohomology, spectral analysis, and causal inference';
-
-  private bridge: PrimeRadiantBridge;
-  private coherenceGate: CoherenceGate;
-  private cache: ResultCache<unknown>;
-  private config: PrimeRadiantConfig;
-  private context: PluginContext | null = null;
-
-  constructor(config?: Partial<PrimeRadiantConfig>) {
-    this.config = { ...DEFAULT_CONFIG, ...config };
-    this.bridge = new PrimeRadiantBridge();
-    this.coherenceGate = new CoherenceGate(this.bridge);
-    this.cache = new ResultCache(1000, this.config.coherence.cacheTTL);
-  }
-
-  /**
-   * Register the plugin with claude-flow
-   */
-  async register(context: PluginContext): Promise<void> {
-    this.context = context;
-
-    // Register plugin in context
-    context.set('prime-radiant', this);
-    context.set('pr.version', this.version);
-    context.set('pr.capabilities', this.getCapabilities());
-  }
-
-  /**
-   * Initialize the plugin (load WASM, set up engines)
-   */
-  async initialize(context: PluginContext): Promise<{ success: boolean; error?: string }> {
-    try {
-      // Load WASM bundle (92KB)
-      await this.bridge.initialize();
-
-      // Store instances in plugin context
-      context.set('pr.bridge', this.bridge);
-      context.set('pr.coherenceGate', this.coherenceGate);
-      context.set('pr.cache', this.cache);
-      context.set('pr.config', this.config);
-
-      // Register with memory service if available
-      if (context.has('memory')) {
-        const memoryService = context.get<{
-          registerPreStoreHook: (hook: (entry: MemoryEntry) => Promise<MemoryEntry>) => void;
-        }>('memory');
-
-        memoryService.registerPreStoreHook(async (entry: MemoryEntry) => {
-          const result = await this.coherenceGate.validate(entry);
-          if (result.action === 'reject') {
-            throw new Error(
-              `${PrimeRadiantErrorCodes.COHERENCE_VIOLATION}: Energy ${result.coherenceResult.energy.toFixed(3)}`
-            );
-          }
-          return entry;
-        });
-      }
-
-      return { success: true };
-    } catch (error) {
-      return {
-        success: false,
-        error: error instanceof Error ? error.message : 'Unknown error',
-      };
-    }
-  }
-
-  /**
-   * Shutdown the plugin (cleanup WASM resources)
-   */
-  async shutdown(_context: PluginContext): Promise<{ success: boolean; error?: string }> {
-    try {
-      await this.bridge.dispose();
-      this.cache.clear();
-      this.context = null;
-      return { success: true };
-    } catch (error) {
-      return {
-        success: false,
-        error: error instanceof Error ? error.message : 'Unknown error',
-      };
-    }
-  }
-
-  /**
-   * Get plugin capabilities
-   */
-  getCapabilities(): string[] {
-    return [
-      'coherence-checking',
-      'spectral-analysis',
-      'causal-inference',
-      'consensus-verification',
-      'quantum-topology',
-      'category-theory',
-      'hott-proofs',
-    ];
-  }
-
-  /**
-   * Get plugin MCP tools
-   */
-  getMCPTools(): PluginMCPTool[] {
-    return [
-      this.createCoherenceCheckTool(),
-      this.createSpectralAnalyzeTool(),
-      this.createCausalInferTool(),
-      this.createConsensusVerifyTool(),
-      this.createQuantumTopologyTool(),
-      this.createMemoryGateTool(),
-    ];
-  }
-
-  /**
-   * Get plugin hooks
-   */
-  getHooks(): PluginHook[] {
-    return [
-      this.createPreMemoryStoreHook(),
-      this.createPreConsensusHook(),
-      this.createPostSwarmTaskHook(),
-      this.createPreRagRetrievalHook(),
-    ];
-  }
-
-  // ============================================================================
-  // MCP Tool Implementations
-  // ============================================================================
-
-  private createCoherenceCheckTool(): PluginMCPTool {
-    return {
-      name: 'pr_coherence_check',
-      description: 'Check coherence of vectors using Sheaf Laplacian energy (0=coherent, 1=contradictory)',
-      category: 'coherence',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          vectors: {
-            type: 'array',
-            items: { type: 'array', items: { type: 'number' } },
-            description: 'Array of embedding vectors to check for coherence',
-          },
-          threshold: {
-            type: 'number',
-            default: 0.3,
-            description: 'Energy threshold for coherence (0-1)',
-          },
-        },
-        required: ['vectors'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateCoherenceInput(input);
-        const vectors = validated.vectors.map((v) => new Float32Array(v));
-        const result = await this.bridge.checkCoherence(vectors);
-
-        const interpretation =
-          result.energy < 0.1
-            ? 'Fully coherent'
-            : result.energy < 0.3
-              ? 'Minor inconsistencies'
-              : result.energy < 0.7
-                ? 'Significant contradictions'
-                : 'Major contradictions detected';
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify({ ...result, interpretation }, null, 2),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  private createSpectralAnalyzeTool(): PluginMCPTool {
-    return {
-      name: 'pr_spectral_analyze',
-      description: 'Analyze stability using spectral graph theory',
-      category: 'spectral',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          adjacencyMatrix: {
-            type: 'array',
-            items: { type: 'array', items: { type: 'number' } },
-            description: 'Adjacency matrix representing connections',
-          },
-          analyzeType: {
-            type: 'string',
-            enum: ['stability', 'clustering', 'connectivity'],
-            default: 'stability',
-          },
-        },
-        required: ['adjacencyMatrix'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateSpectralInput(input);
-        const flat = validated.adjacencyMatrix.flat();
-        const matrix = new Float32Array(flat);
-        const result = await this.bridge.analyzeSpectral(matrix);
-
-        const interpretation = result.stable
-          ? 'System is spectrally stable'
-          : 'System shows instability patterns';
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify(
-                {
-                  ...result,
-                  eigenvalues: result.eigenvalues.slice(0, 10),
-                  interpretation,
-                },
-                null,
-                2
-              ),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  private createCausalInferTool(): PluginMCPTool {
-    return {
-      name: 'pr_causal_infer',
-      description: 'Perform causal inference using do-calculus',
-      category: 'causal',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          treatment: { type: 'string', description: 'Treatment/intervention variable' },
-          outcome: { type: 'string', description: 'Outcome variable' },
-          graph: {
-            type: 'object',
-            properties: {
-              nodes: { type: 'array', items: { type: 'string' } },
-              edges: { type: 'array', items: { type: 'array', items: { type: 'string' } } },
-            },
-            description: 'Causal graph with nodes and edges',
-          },
-        },
-        required: ['treatment', 'outcome', 'graph'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateCausalInput(input);
-        const result = await this.bridge.inferCausal(
-          validated.treatment,
-          validated.outcome,
-          validated.graph
-        );
-
-        const recommendation = result.interventionValid
-          ? 'Intervention is valid for causal inference'
-          : `Confounders detected: ${result.confounders.join(', ')}`;
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify({ ...result, recommendation }, null, 2),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  private createConsensusVerifyTool(): PluginMCPTool {
-    return {
-      name: 'pr_consensus_verify',
-      description: 'Verify multi-agent consensus mathematically',
-      category: 'consensus',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          agentStates: {
-            type: 'array',
-            items: {
-              type: 'object',
-              properties: {
-                agentId: { type: 'string' },
-                embedding: { type: 'array', items: { type: 'number' } },
-                vote: { type: 'string' },
-              },
-            },
-            description: 'Array of agent states to verify consensus',
-          },
-          consensusThreshold: {
-            type: 'number',
-            default: 0.8,
-            description: 'Required agreement threshold (0-1)',
-          },
-        },
-        required: ['agentStates'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateConsensusInput(input);
-        const vectors = validated.agentStates.map((s) => new Float32Array(s.embedding));
-
-        const coherence = await this.bridge.checkCoherence(vectors);
-
-        // Build adjacency matrix
-        const n = vectors.length;
-        const adj = new Float32Array(n * n);
-        for (let i = 0; i < n; i++) {
-          for (let j = 0; j < n; j++) {
-            adj[i * n + j] = this.cosineSimilarity(vectors[i], vectors[j]);
-          }
-        }
-
-        const spectral = await this.bridge.analyzeSpectral(adj);
-        const agreementRatio = 1 - coherence.energy;
-        const consensusAchieved = agreementRatio >= validated.consensusThreshold;
-
-        const result: ConsensusResult = {
-          consensusAchieved,
-          agreementRatio,
-          coherenceEnergy: coherence.energy,
-          spectralStability: spectral.stable,
-          spectralGap: spectral.spectralGap,
-          violations: coherence.violations,
-          recommendation: consensusAchieved
-            ? 'Consensus is mathematically verified'
-            : `Consensus not achieved. Disagreement energy: ${coherence.energy.toFixed(3)}`,
-        };
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify(result, null, 2),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  private createQuantumTopologyTool(): PluginMCPTool {
-    return {
-      name: 'pr_quantum_topology',
-      description: 'Compute quantum topology features (Betti numbers, persistence)',
-      category: 'topology',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          points: {
-            type: 'array',
-            items: { type: 'array', items: { type: 'number' } },
-            description: 'Point cloud for topological analysis',
-          },
-          maxDimension: {
-            type: 'number',
-            default: 2,
-            description: 'Maximum homology dimension to compute',
-          },
-        },
-        required: ['points'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateTopologyInput(input);
-        const points = validated.points.map((p) => new Float32Array(p));
-        const result = await this.bridge.computeTopology(points, validated.maxDimension);
-
-        const interpretation = {
-          b0: `${result.bettiNumbers[0]} connected components`,
-          b1: `${result.bettiNumbers[1] || 0} loops/cycles`,
-          b2: `${result.bettiNumbers[2] || 0} voids/cavities`,
-        };
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify({ ...result, interpretation }, null, 2),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  private createMemoryGateTool(): PluginMCPTool {
-    return {
-      name: 'pr_memory_gate',
-      description: 'Pre-storage coherence gate for memory entries',
-      category: 'memory',
-      version: this.version,
-      inputSchema: {
-        type: 'object',
-        properties: {
-          entry: {
-            type: 'object',
-            properties: {
-              key: { type: 'string' },
-              content: { type: 'string' },
-              embedding: { type: 'array', items: { type: 'number' } },
-            },
-            description: 'Memory entry to validate',
-          },
-          contextEmbeddings: {
-            type: 'array',
-            items: { type: 'array', items: { type: 'number' } },
-            description: 'Existing context embeddings',
-          },
-          thresholds: {
-            type: 'object',
-            properties: {
-              reject: { type: 'number' },
-              warn: { type: 'number' },
-            },
-          },
-        },
-        required: ['entry'],
-      },
-      handler: async (input: unknown, _context: PluginContext) => {
-        const validated = validateMemoryGateInput(input);
-
-        const entry: MemoryEntry = {
-          key: validated.entry.key,
-          content: validated.entry.content,
-          embedding: new Float32Array(validated.entry.embedding),
-        };
-
-        const existingContext = validated.contextEmbeddings?.map((e, i) => ({
-          key: `context-${i}`,
-          content: '',
-          embedding: new Float32Array(e),
-        }));
-
-        if (validated.thresholds) {
-          this.coherenceGate.setThresholds(validated.thresholds);
-        }
-
-        const result = await this.coherenceGate.validate(entry, existingContext);
-
-        const recommendation =
-          result.action === 'allow'
-            ? 'Entry is coherent with existing context'
-            : result.action === 'warn'
-              ? 'Entry has minor inconsistencies - review recommended'
-              : 'Entry contradicts existing context - storage blocked';
-
-        return {
-          content: [
-            {
-              type: 'text' as const,
-              text: JSON.stringify(
-                {
-                  action: result.action,
-                  coherent: result.coherenceResult.coherent,
-                  energy: result.coherenceResult.energy,
-                  violations: result.coherenceResult.violations,
-                  confidence: result.coherenceResult.confidence,
-                  recommendation,
-                },
-                null,
-                2
-              ),
-            },
-          ],
-        };
-      },
-    };
-  }
-
-  // ============================================================================
-  // Hook Implementations
-  // ============================================================================
-
-  private createPreMemoryStoreHook(): PluginHook {
-    return {
-      name: 'pr/pre-memory-store',
-      event: 'pre-memory-store',
-      priority: 100 as HookPriority,
-      description: 'Validates memory entry coherence before storage',
-      handler: async (_context: PluginContext, payload: unknown) => {
-        const entry = payload as MemoryEntry;
-        const validation = await this.coherenceGate.validate(entry);
-
-        if (validation.action === 'reject') {
-          throw new Error(
-            `${PrimeRadiantErrorCodes.COHERENCE_VIOLATION}: ${validation.coherenceResult.violations.join(', ')}`
-          );
-        }
-
-        if (validation.action === 'warn') {
-          console.warn(
-            `[Prime Radiant] Coherence warning for ${entry.key}: energy=${validation.coherenceResult.energy.toFixed(3)}`
-          );
-        }
-
-        return {
-          ...entry,
-          metadata: {
-            ...(entry.metadata || {}),
-            coherenceEnergy: validation.coherenceResult.energy,
-            coherenceChecked: true,
-          },
-        };
-      },
-    };
-  }
-
-  private createPreConsensusHook(): PluginHook {
-    return {
-      name: 'pr/pre-consensus',
-      event: 'pre-consensus',
-      priority: 100 as HookPriority,
-      description: 'Validates consensus proposal coherence before voting',
-      handler: async (_context: PluginContext, payload: unknown) => {
-        const proposal = payload as {
-          proposalEmbedding: number[];
-          existingDecisions: Array<{ embedding: number[] }>;
-        };
-
-        const vectors = [
-          new Float32Array(proposal.proposalEmbedding),
-          ...proposal.existingDecisions.map((d) => new Float32Array(d.embedding)),
-        ];
-
-        const coherence = await this.bridge.checkCoherence(vectors);
-
-        if (coherence.energy > 0.7) {
-          return {
-            ...proposal,
-            rejected: true,
-            rejectionReason: `Proposal contradicts existing decisions (energy: ${coherence.energy.toFixed(3)})`,
-          };
-        }
-
-        return {
-          ...proposal,
-          coherenceEnergy: coherence.energy,
-          coherenceConfidence: coherence.confidence,
-        };
-      },
-    };
-  }
-
-  private createPostSwarmTaskHook(): PluginHook {
-    return {
-      name: 'pr/post-swarm-task',
-      event: 'post-task',
-      priority: 50 as HookPriority,
-      description: 'Analyzes swarm stability after task completion',
-      handler: async (context: PluginContext, payload: unknown) => {
-        const task = payload as { isSwarmTask?: boolean; taskId: string };
-        if (!task.isSwarmTask) return payload;
-
-        // Get agent states if hive-mind is available
-        if (!context.has('hiveMind')) return payload;
-
-        const hiveMind = context.get<{
-          getAgentStates: () => Promise<
-            Array<{
-              id: string;
-              communicationsWith?: Record<string, number>;
-              totalCommunications?: number;
-            }>
-          >;
-        }>('hiveMind');
-
-        const agentStates = await hiveMind.getAgentStates();
-        const n = agentStates.length;
-
-        if (n < 2) return payload;
-
-        // Build adjacency matrix
-        const adj = new Float32Array(n * n);
-        for (let i = 0; i < n; i++) {
-          for (let j = 0; j < n; j++) {
-            const commCount = agentStates[i].communicationsWith?.[agentStates[j].id] || 0;
-            adj[i * n + j] = commCount / (agentStates[i].totalCommunications || 1);
-          }
-        }
-
-        const spectral = await this.bridge.analyzeSpectral(adj);
-
-        // Store metrics
-        if (context.has('memory')) {
-          const memory = context.get<{
-            store: (entry: { namespace: string; key: string; content: string }) => Promise<void>;
-          }>('memory');
-          await memory.store({
-            namespace: 'pr/stability-metrics',
-            key: `task-${task.taskId}`,
-            content: JSON.stringify({
-              taskId: task.taskId,
-              stable: spectral.stable,
-              spectralGap: spectral.spectralGap,
-              stabilityIndex: spectral.stabilityIndex,
-              timestamp: Date.now(),
-            }),
-          });
-        }
-
-        return {
-          ...(payload as Record<string, unknown>),
-          stabilityMetrics: {
-            stable: spectral.stable,
-            spectralGap: spectral.spectralGap,
-          },
-        };
-      },
-    };
-  }
-
-  private createPreRagRetrievalHook(): PluginHook {
-    return {
-      name: 'pr/pre-rag-retrieval',
-      event: 'pre-rag-retrieval',
-      priority: 100 as HookPriority,
-      description: 'Checks retrieved context coherence to prevent hallucinations',
-      handler: async (_context: PluginContext, payload: unknown) => {
-        const retrieval = payload as {
-          retrievedDocs: Array<{ embedding: number[] }>;
-        };
-
-        const vectors = retrieval.retrievedDocs.map((d) => new Float32Array(d.embedding));
-
-        if (vectors.length < 2) return payload;
-
-        const coherence = await this.bridge.checkCoherence(vectors);
-
-        if (coherence.energy > 0.5) {
-          console.warn(
-            `[Prime Radiant] RAG coherence warning: ${coherence.violations.join(', ')}`
-          );
-
-          return {
-            ...retrieval,
-            retrievedDocs: retrieval.retrievedDocs.slice(
-              0,
-              Math.ceil(retrieval.retrievedDocs.length / 2)
-            ),
-            coherenceFiltered: true,
-            originalCoherenceEnergy: coherence.energy,
-          };
-        }
-
-        return payload;
-      },
-    };
-  }
-
-  // ============================================================================
-  // Helper Methods
-  // ============================================================================
-
-  private cosineSimilarity(a: Float32Array, b: Float32Array): number {
-    let dotProduct = 0;
-    let normA = 0;
-    let normB = 0;
-    const len = Math.min(a.length, b.length);
-    for (let i = 0; i < len; i++) {
-      dotProduct += a[i] * b[i];
-      normA += a[i] * a[i];
-      normB += b[i] * b[i];
-    }
-    const denom = Math.sqrt(normA) * Math.sqrt(normB);
-    return denom > 0 ? dotProduct / denom : 0;
-  }
-
-  // ============================================================================
-  // Public API
-  // ============================================================================
-
-  /**
-   * Get the WASM bridge instance
-   */
-  getBridge(): IPrimeRadiantBridge {
-    return this.bridge;
-  }
-
-  /**
-   * Get the coherence gate instance
-   */
-  getCoherenceGate(): ICoherenceGate {
-    return this.coherenceGate;
-  }
-
-  /**
-   * Get the result cache instance
-   */
-  getCache(): IResultCache<unknown> {
-    return this.cache;
-  }
-
-  /**
-   * Get the current configuration
-   */
-  getConfig(): PrimeRadiantConfig {
-    return { ...this.config };
-  }
-
-  /**
-   * Update configuration
-   */
-  updateConfig(config: Partial<PrimeRadiantConfig>): void {
-    this.config = validateConfig({ ...this.config, ...config });
-    this.coherenceGate.setThresholds({
-      reject: this.config.coherence.rejectThreshold,
-      warn: this.config.coherence.warnThreshold,
-      allow: this.config.coherence.warnThreshold,
-    });
-  }
-}