boltz-api 0.39.2 → 0.40.0

package/src/resources/protein/library-screen.ts

@@ -440,19 +440,26 @@ export namespace LibraryScreenRetrieveResponse {
         cyclic?: boolean;
 
         /**
-         * Post-translational modifications. Optional; defaults to an empty list when
-         * omitted.
+         * CCD post-translational modifications. Optional; defaults to an empty list when
+         * omitted. SMILES modifications are not supported.
          */
         modifications?: Array<ProteinEntityResponse.Modification>;
       }
 
       export namespace ProteinEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -482,18 +489,26 @@ export namespace LibraryScreenRetrieveResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<RnaEntityResponse.Modification>;
       }
 
       export namespace RnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -523,18 +538,26 @@ export namespace LibraryScreenRetrieveResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<DnaEntityResponse.Modification>;
       }
 
       export namespace DnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -1077,19 +1100,26 @@ export namespace LibraryScreenListResultsResponse {
     cyclic?: boolean;
 
     /**
-     * Post-translational modifications. Optional; defaults to an empty list when
-     * omitted.
+     * CCD post-translational modifications. Optional; defaults to an empty list when
+     * omitted. SMILES modifications are not supported.
      */
     modifications?: Array<ProteinEntity.Modification>;
   }
 
   export namespace ProteinEntity {
+    /**
+     * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+     * are not accepted.
+     */
     export interface Modification {
       /**
        * 0-based index of the residue to modify
        */
       residue_index: number;
 
+      /**
+       * Modification format. Only CCD polymer modifications are supported.
+       */
       type: 'ccd';
 
       /**
@@ -1119,18 +1149,26 @@ export namespace LibraryScreenListResultsResponse {
     cyclic?: boolean;
 
     /**
-     * Chemical modifications. Optional; defaults to an empty list when omitted.
+     * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+     * SMILES modifications are not supported.
      */
     modifications?: Array<RnaEntity.Modification>;
   }
 
   export namespace RnaEntity {
+    /**
+     * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+     * are not accepted.
+     */
     export interface Modification {
       /**
        * 0-based index of the residue to modify
        */
       residue_index: number;
 
+      /**
+       * Modification format. Only CCD polymer modifications are supported.
+       */
       type: 'ccd';
 
       /**
@@ -1160,18 +1198,26 @@ export namespace LibraryScreenListResultsResponse {
     cyclic?: boolean;
 
     /**
-     * Chemical modifications. Optional; defaults to an empty list when omitted.
+     * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+     * SMILES modifications are not supported.
      */
     modifications?: Array<DnaEntity.Modification>;
   }
 
   export namespace DnaEntity {
+    /**
+     * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+     * are not accepted.
+     */
     export interface Modification {
       /**
        * 0-based index of the residue to modify
        */
       residue_index: number;
 
+      /**
+       * Modification format. Only CCD polymer modifications are supported.
+       */
       type: 'ccd';
 
       /**
@@ -1520,19 +1566,26 @@ export namespace LibraryScreenStartResponse {
         cyclic?: boolean;
 
         /**
-         * Post-translational modifications. Optional; defaults to an empty list when
-         * omitted.
+         * CCD post-translational modifications. Optional; defaults to an empty list when
+         * omitted. SMILES modifications are not supported.
          */
         modifications?: Array<ProteinEntityResponse.Modification>;
       }
 
       export namespace ProteinEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -1562,18 +1615,26 @@ export namespace LibraryScreenStartResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<RnaEntityResponse.Modification>;
       }
 
       export namespace RnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -1603,18 +1664,26 @@ export namespace LibraryScreenStartResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<DnaEntityResponse.Modification>;
       }
 
       export namespace DnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -2158,19 +2227,26 @@ export namespace LibraryScreenStopResponse {
         cyclic?: boolean;
 
         /**
-         * Post-translational modifications. Optional; defaults to an empty list when
-         * omitted.
+         * CCD post-translational modifications. Optional; defaults to an empty list when
+         * omitted. SMILES modifications are not supported.
          */
         modifications?: Array<ProteinEntityResponse.Modification>;
       }
 
       export namespace ProteinEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -2200,18 +2276,26 @@ export namespace LibraryScreenStopResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<RnaEntityResponse.Modification>;
       }
 
       export namespace RnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -2241,18 +2325,26 @@ export namespace LibraryScreenStopResponse {
         cyclic?: boolean;
 
         /**
-         * Chemical modifications. Optional; defaults to an empty list when omitted.
+         * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+         * SMILES modifications are not supported.
          */
         modifications?: Array<DnaEntityResponse.Modification>;
       }
 
       export namespace DnaEntityResponse {
+        /**
+         * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+         * are not accepted.
+         */
         export interface Modification {
           /**
            * 0-based index of the residue to modify
            */
           residue_index: number;
 
+          /**
+           * Modification format. Only CCD polymer modifications are supported.
+           */
           type: 'ccd';
 
           /**
@@ -2627,19 +2719,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Post-translational modifications. Optional; defaults to an empty list when
-       * omitted.
+       * CCD post-translational modifications. Optional; defaults to an empty list when
+       * omitted. SMILES modifications are not supported.
        */
       modifications?: Array<ProteinEntity.Modification>;
     }
 
     export namespace ProteinEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -2669,18 +2768,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<RnaEntity.Modification>;
     }
 
     export namespace RnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -2710,18 +2817,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<DnaEntity.Modification>;
     }
 
     export namespace DnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -2920,19 +3035,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Post-translational modifications. Optional; defaults to an empty list when
-       * omitted.
+       * CCD post-translational modifications. Optional; defaults to an empty list when
+       * omitted. SMILES modifications are not supported.
        */
       modifications?: Array<ProteinEntity.Modification>;
     }
 
     export namespace ProteinEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -2962,18 +3084,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<RnaEntity.Modification>;
     }
 
     export namespace RnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3003,18 +3133,26 @@ export namespace LibraryScreenEstimateCostParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<DnaEntity.Modification>;
     }
 
     export namespace DnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3351,19 +3489,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Post-translational modifications. Optional; defaults to an empty list when
-       * omitted.
+       * CCD post-translational modifications. Optional; defaults to an empty list when
+       * omitted. SMILES modifications are not supported.
        */
       modifications?: Array<ProteinEntity.Modification>;
     }
 
     export namespace ProteinEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3393,18 +3538,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<RnaEntity.Modification>;
     }
 
     export namespace RnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3434,18 +3587,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<DnaEntity.Modification>;
     }
 
     export namespace DnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3644,19 +3805,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Post-translational modifications. Optional; defaults to an empty list when
-       * omitted.
+       * CCD post-translational modifications. Optional; defaults to an empty list when
+       * omitted. SMILES modifications are not supported.
        */
       modifications?: Array<ProteinEntity.Modification>;
     }
 
     export namespace ProteinEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3686,18 +3854,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<RnaEntity.Modification>;
     }
 
     export namespace RnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**
@@ -3727,18 +3903,26 @@ export namespace LibraryScreenStartParams {
       cyclic?: boolean;
 
       /**
-       * Chemical modifications. Optional; defaults to an empty list when omitted.
+       * CCD chemical modifications. Optional; defaults to an empty list when omitted.
+       * SMILES modifications are not supported.
        */
       modifications?: Array<DnaEntity.Modification>;
     }
 
     export namespace DnaEntity {
+      /**
+       * Polymer residue modification. Only CCD codes are supported; SMILES modifications
+       * are not accepted.
+       */
       export interface Modification {
         /**
          * 0-based index of the residue to modify
          */
         residue_index: number;
 
+        /**
+         * Modification format. Only CCD polymer modifications are supported.
+         */
         type: 'ccd';
 
         /**