boltz-api 0.39.2 → 0.40.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (32) hide show
  1. package/CHANGELOG.md +16 -0
  2. package/package.json +1 -1
  3. package/resources/predictions/structure-and-binding.d.mts +108 -16
  4. package/resources/predictions/structure-and-binding.d.mts.map +1 -1
  5. package/resources/predictions/structure-and-binding.d.ts +108 -16
  6. package/resources/predictions/structure-and-binding.d.ts.map +1 -1
  7. package/resources/protein/design.d.mts +382 -44
  8. package/resources/protein/design.d.mts.map +1 -1
  9. package/resources/protein/design.d.ts +382 -44
  10. package/resources/protein/design.d.ts.map +1 -1
  11. package/resources/protein/library-screen.d.mts +216 -32
  12. package/resources/protein/library-screen.d.mts.map +1 -1
  13. package/resources/protein/library-screen.d.ts +216 -32
  14. package/resources/protein/library-screen.d.ts.map +1 -1
  15. package/resources/small-molecule/design.d.mts +85 -10
  16. package/resources/small-molecule/design.d.mts.map +1 -1
  17. package/resources/small-molecule/design.d.ts +85 -10
  18. package/resources/small-molecule/design.d.ts.map +1 -1
  19. package/resources/small-molecule/library-screen.d.mts +45 -10
  20. package/resources/small-molecule/library-screen.d.mts.map +1 -1
  21. package/resources/small-molecule/library-screen.d.ts +45 -10
  22. package/resources/small-molecule/library-screen.d.ts.map +1 -1
  23. package/src/resources/predictions/structure-and-binding.ts +108 -16
  24. package/src/resources/protein/design.ts +390 -44
  25. package/src/resources/protein/library-screen.ts +216 -32
  26. package/src/resources/small-molecule/design.ts +93 -10
  27. package/src/resources/small-molecule/library-screen.ts +45 -10
  28. package/src/version.ts +1 -1
  29. package/version.d.mts +1 -1
  30. package/version.d.ts +1 -1
  31. package/version.js +1 -1
  32. package/version.mjs +1 -1
package/src/resources/predictions/structure-and-binding.ts CHANGED
@@ -288,8 +288,8 @@ export namespace StructureAndBindingRetrieveResponse {
288
288
  cyclic?: boolean;
289
289
 
290
290
  /**
291
- * Post-translational modifications. Optional; defaults to an empty list when
292
- * omitted.
291
+ * CCD post-translational modifications. Optional; defaults to an empty list when
292
+ * omitted. SMILES modifications are not supported.
293
293
  */
294
294
  modifications?: Array<Boltz2ProteinEntityResponse.Modification>;
295
295
 
@@ -305,12 +305,19 @@ export namespace StructureAndBindingRetrieveResponse {
305
305
  }
306
306
 
307
307
  export namespace Boltz2ProteinEntityResponse {
308
+ /**
309
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
310
+ * are not accepted.
311
+ */
308
312
  export interface Modification {
309
313
  /**
310
314
  * 0-based index of the residue to modify
311
315
  */
312
316
  residue_index: number;
313
317
 
318
+ /**
319
+ * Modification format. Only CCD polymer modifications are supported.
320
+ */
314
321
  type: 'ccd';
315
322
 
316
323
  /**
@@ -380,18 +387,26 @@ export namespace StructureAndBindingRetrieveResponse {
380
387
  cyclic?: boolean;
381
388
 
382
389
  /**
383
- * Chemical modifications. Optional; defaults to an empty list when omitted.
390
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
391
+ * SMILES modifications are not supported.
384
392
  */
385
393
  modifications?: Array<RnaEntityResponse.Modification>;
386
394
  }
387
395
 
388
396
  export namespace RnaEntityResponse {
397
+ /**
398
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
399
+ * are not accepted.
400
+ */
389
401
  export interface Modification {
390
402
  /**
391
403
  * 0-based index of the residue to modify
392
404
  */
393
405
  residue_index: number;
394
406
 
407
+ /**
408
+ * Modification format. Only CCD polymer modifications are supported.
409
+ */
395
410
  type: 'ccd';
396
411
 
397
412
  /**
@@ -421,18 +436,26 @@ export namespace StructureAndBindingRetrieveResponse {
421
436
  cyclic?: boolean;
422
437
 
423
438
  /**
424
- * Chemical modifications. Optional; defaults to an empty list when omitted.
439
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
440
+ * SMILES modifications are not supported.
425
441
  */
426
442
  modifications?: Array<DnaEntityResponse.Modification>;
427
443
  }
428
444
 
429
445
  export namespace DnaEntityResponse {
446
+ /**
447
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
448
+ * are not accepted.
449
+ */
430
450
  export interface Modification {
431
451
  /**
432
452
  * 0-based index of the residue to modify
433
453
  */
434
454
  residue_index: number;
435
455
 
456
+ /**
457
+ * Modification format. Only CCD polymer modifications are supported.
458
+ */
436
459
  type: 'ccd';
437
460
 
438
461
  /**
@@ -1271,8 +1294,8 @@ export namespace StructureAndBindingStartResponse {
1271
1294
  cyclic?: boolean;
1272
1295
 
1273
1296
  /**
1274
- * Post-translational modifications. Optional; defaults to an empty list when
1275
- * omitted.
1297
+ * CCD post-translational modifications. Optional; defaults to an empty list when
1298
+ * omitted. SMILES modifications are not supported.
1276
1299
  */
1277
1300
  modifications?: Array<Boltz2ProteinEntityResponse.Modification>;
1278
1301
 
@@ -1288,12 +1311,19 @@ export namespace StructureAndBindingStartResponse {
1288
1311
  }
1289
1312
 
1290
1313
  export namespace Boltz2ProteinEntityResponse {
1314
+ /**
1315
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
1316
+ * are not accepted.
1317
+ */
1291
1318
  export interface Modification {
1292
1319
  /**
1293
1320
  * 0-based index of the residue to modify
1294
1321
  */
1295
1322
  residue_index: number;
1296
1323
 
1324
+ /**
1325
+ * Modification format. Only CCD polymer modifications are supported.
1326
+ */
1297
1327
  type: 'ccd';
1298
1328
 
1299
1329
  /**
@@ -1363,18 +1393,26 @@ export namespace StructureAndBindingStartResponse {
1363
1393
  cyclic?: boolean;
1364
1394
 
1365
1395
  /**
1366
- * Chemical modifications. Optional; defaults to an empty list when omitted.
1396
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
1397
+ * SMILES modifications are not supported.
1367
1398
  */
1368
1399
  modifications?: Array<RnaEntityResponse.Modification>;
1369
1400
  }
1370
1401
 
1371
1402
  export namespace RnaEntityResponse {
1403
+ /**
1404
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
1405
+ * are not accepted.
1406
+ */
1372
1407
  export interface Modification {
1373
1408
  /**
1374
1409
  * 0-based index of the residue to modify
1375
1410
  */
1376
1411
  residue_index: number;
1377
1412
 
1413
+ /**
1414
+ * Modification format. Only CCD polymer modifications are supported.
1415
+ */
1378
1416
  type: 'ccd';
1379
1417
 
1380
1418
  /**
@@ -1404,18 +1442,26 @@ export namespace StructureAndBindingStartResponse {
1404
1442
  cyclic?: boolean;
1405
1443
 
1406
1444
  /**
1407
- * Chemical modifications. Optional; defaults to an empty list when omitted.
1445
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
1446
+ * SMILES modifications are not supported.
1408
1447
  */
1409
1448
  modifications?: Array<DnaEntityResponse.Modification>;
1410
1449
  }
1411
1450
 
1412
1451
  export namespace DnaEntityResponse {
1452
+ /**
1453
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
1454
+ * are not accepted.
1455
+ */
1413
1456
  export interface Modification {
1414
1457
  /**
1415
1458
  * 0-based index of the residue to modify
1416
1459
  */
1417
1460
  residue_index: number;
1418
1461
 
1462
+ /**
1463
+ * Modification format. Only CCD polymer modifications are supported.
1464
+ */
1419
1465
  type: 'ccd';
1420
1466
 
1421
1467
  /**
@@ -2061,8 +2107,8 @@ export namespace StructureAndBindingEstimateCostParams {
2061
2107
  cyclic?: boolean;
2062
2108
 
2063
2109
  /**
2064
- * Post-translational modifications. Optional; defaults to an empty list when
2065
- * omitted.
2110
+ * CCD post-translational modifications. Optional; defaults to an empty list when
2111
+ * omitted. SMILES modifications are not supported.
2066
2112
  */
2067
2113
  modifications?: Array<Boltz2ProteinEntity.Modification>;
2068
2114
 
@@ -2076,12 +2122,19 @@ export namespace StructureAndBindingEstimateCostParams {
2076
2122
  }
2077
2123
 
2078
2124
  export namespace Boltz2ProteinEntity {
2125
+ /**
2126
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2127
+ * are not accepted.
2128
+ */
2079
2129
  export interface Modification {
2080
2130
  /**
2081
2131
  * 0-based index of the residue to modify
2082
2132
  */
2083
2133
  residue_index: number;
2084
2134
 
2135
+ /**
2136
+ * Modification format. Only CCD polymer modifications are supported.
2137
+ */
2085
2138
  type: 'ccd';
2086
2139
 
2087
2140
  /**
@@ -2162,18 +2215,26 @@ export namespace StructureAndBindingEstimateCostParams {
2162
2215
  cyclic?: boolean;
2163
2216
 
2164
2217
  /**
2165
- * Chemical modifications. Optional; defaults to an empty list when omitted.
2218
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
2219
+ * SMILES modifications are not supported.
2166
2220
  */
2167
2221
  modifications?: Array<RnaEntity.Modification>;
2168
2222
  }
2169
2223
 
2170
2224
  export namespace RnaEntity {
2225
+ /**
2226
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2227
+ * are not accepted.
2228
+ */
2171
2229
  export interface Modification {
2172
2230
  /**
2173
2231
  * 0-based index of the residue to modify
2174
2232
  */
2175
2233
  residue_index: number;
2176
2234
 
2235
+ /**
2236
+ * Modification format. Only CCD polymer modifications are supported.
2237
+ */
2177
2238
  type: 'ccd';
2178
2239
 
2179
2240
  /**
@@ -2203,18 +2264,26 @@ export namespace StructureAndBindingEstimateCostParams {
2203
2264
  cyclic?: boolean;
2204
2265
 
2205
2266
  /**
2206
- * Chemical modifications. Optional; defaults to an empty list when omitted.
2267
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
2268
+ * SMILES modifications are not supported.
2207
2269
  */
2208
2270
  modifications?: Array<DnaEntity.Modification>;
2209
2271
  }
2210
2272
 
2211
2273
  export namespace DnaEntity {
2274
+ /**
2275
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2276
+ * are not accepted.
2277
+ */
2212
2278
  export interface Modification {
2213
2279
  /**
2214
2280
  * 0-based index of the residue to modify
2215
2281
  */
2216
2282
  residue_index: number;
2217
2283
 
2284
+ /**
2285
+ * Modification format. Only CCD polymer modifications are supported.
2286
+ */
2218
2287
  type: 'ccd';
2219
2288
 
2220
2289
  /**
@@ -2662,8 +2731,8 @@ export namespace StructureAndBindingStartParams {
2662
2731
  cyclic?: boolean;
2663
2732
 
2664
2733
  /**
2665
- * Post-translational modifications. Optional; defaults to an empty list when
2666
- * omitted.
2734
+ * CCD post-translational modifications. Optional; defaults to an empty list when
2735
+ * omitted. SMILES modifications are not supported.
2667
2736
  */
2668
2737
  modifications?: Array<Boltz2ProteinEntity.Modification>;
2669
2738
 
@@ -2677,12 +2746,19 @@ export namespace StructureAndBindingStartParams {
2677
2746
  }
2678
2747
 
2679
2748
  export namespace Boltz2ProteinEntity {
2749
+ /**
2750
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2751
+ * are not accepted.
2752
+ */
2680
2753
  export interface Modification {
2681
2754
  /**
2682
2755
  * 0-based index of the residue to modify
2683
2756
  */
2684
2757
  residue_index: number;
2685
2758
 
2759
+ /**
2760
+ * Modification format. Only CCD polymer modifications are supported.
2761
+ */
2686
2762
  type: 'ccd';
2687
2763
 
2688
2764
  /**
@@ -2763,18 +2839,26 @@ export namespace StructureAndBindingStartParams {
2763
2839
  cyclic?: boolean;
2764
2840
 
2765
2841
  /**
2766
- * Chemical modifications. Optional; defaults to an empty list when omitted.
2842
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
2843
+ * SMILES modifications are not supported.
2767
2844
  */
2768
2845
  modifications?: Array<RnaEntity.Modification>;
2769
2846
  }
2770
2847
 
2771
2848
  export namespace RnaEntity {
2849
+ /**
2850
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2851
+ * are not accepted.
2852
+ */
2772
2853
  export interface Modification {
2773
2854
  /**
2774
2855
  * 0-based index of the residue to modify
2775
2856
  */
2776
2857
  residue_index: number;
2777
2858
 
2859
+ /**
2860
+ * Modification format. Only CCD polymer modifications are supported.
2861
+ */
2778
2862
  type: 'ccd';
2779
2863
 
2780
2864
  /**
@@ -2804,18 +2888,26 @@ export namespace StructureAndBindingStartParams {
2804
2888
  cyclic?: boolean;
2805
2889
 
2806
2890
  /**
2807
- * Chemical modifications. Optional; defaults to an empty list when omitted.
2891
+ * CCD chemical modifications. Optional; defaults to an empty list when omitted.
2892
+ * SMILES modifications are not supported.
2808
2893
  */
2809
2894
  modifications?: Array<DnaEntity.Modification>;
2810
2895
  }
2811
2896
 
2812
2897
  export namespace DnaEntity {
2898
+ /**
2899
+ * Polymer residue modification. Only CCD codes are supported; SMILES modifications
2900
+ * are not accepted.
2901
+ */
2813
2902
  export interface Modification {
2814
2903
  /**
2815
2904
  * 0-based index of the residue to modify
2816
2905
  */
2817
2906
  residue_index: number;
2818
2907
 
2908
+ /**
2909
+ * Modification format. Only CCD polymer modifications are supported.
2910
+ */
2819
2911
  type: 'ccd';
2820
2912
 
2821
2913
  /**