agileflow 3.4.3 → 4.0.0-alpha.1

package/scripts/lib/configure-features.js

@@ -1,1927 +0,0 @@
-/**
- * configure-features.js - Feature enable/disable handlers for agileflow-configure
- *
- * Extracted from agileflow-configure.js (US-0094)
- */
-
-const fs = require('fs');
-const path = require('path');
-const crypto = require('crypto');
-const os = require('os');
-const {
-  c,
-  log,
-  success,
-  warn,
-  error,
-  info,
-  header,
-  ensureDir,
-  readJSON,
-  writeJSON,
-  updateGitignore,
-} = require('./configure-utils');
-
-// ============================================================================
-// CONFIGURATION CONSTANTS
-// ============================================================================
-
-const FEATURES = {
-  sessionstart: { hook: 'SessionStart', script: 'agileflow-welcome.js', type: 'node' },
-  precompact: { hook: 'PreCompact', script: 'precompact-context.sh', type: 'bash' },
-  ralphloop: { hook: 'Stop', script: 'ralph-loop.js', type: 'node' },
-  selfimprove: { hook: 'Stop', script: 'auto-self-improve.js', type: 'node' },
-  archival: { script: 'archive-completed-stories.sh', requiresHook: 'sessionstart' },
-  statusline: { script: 'agileflow-statusline.sh' },
-  autoupdate: { metadataOnly: true },
-  damagecontrol: {
-    preToolUseHooks: true,
-    scripts: ['damage-control-bash.js', 'damage-control-edit.js', 'damage-control-write.js'],
-    patternsFile: 'damage-control-patterns.yaml',
-  },
-  askuserquestion: { metadataOnly: true },
-  tmuxautospawn: { metadataOnly: true },
-  shellaliases: {
-    metadataOnly: false,
-    description: 'Shell aliases (af/agileflow) for tmux-wrapped Claude',
-  },
-  claudemdreinforcement: {
-    metadataOnly: false,
-    description: 'Add /babysit rules to CLAUDE.md for context preservation',
-  },
-  processcleanup: {
-    metadataOnly: true,
-    description: 'Auto-kill duplicate Claude processes in same directory to prevent freezing',
-  },
-  claudeflags: {
-    metadataOnly: false,
-    description:
-      'Default flags for Claude CLI (sets permissions.defaultMode in .claude/settings.json)',
-  },
-  agentteams: {
-    metadataOnly: false,
-    description: 'Enable Claude Code native Agent Teams (sets env var in .claude/settings.json)',
-  },
-  noaiattribution: {
-    preToolUseHook: true,
-    script: 'strip-ai-attribution.js',
-    description: 'Block git commits containing AI attribution (Co-Authored-By, etc.)',
-  },
-  browserqa: {
-    metadataOnly: false,
-    description:
-      'Agentic browser testing with Playwright (Bowser four-layer pattern). Screenshot evidence, 80% pass rate threshold.',
-  },
-  contextverbosity: {
-    metadataOnly: true,
-    description: 'Control how much context is loaded per command (full/lite/minimal)',
-  },
-};
-
-const PROFILES = {
-  full: {
-    description: 'All features enabled (including experimental Stop hooks)',
-    enable: [
-      'sessionstart',
-      'precompact',
-      'archival',
-      'statusline',
-      'ralphloop',
-      'selfimprove',
-      'askuserquestion',
-      'tmuxautospawn',
-      'noaiattribution',
-    ],
-    archivalDays: 30,
-  },
-  basic: {
-    description: 'Essential hooks + archival (SessionStart + PreCompact + Archival)',
-    enable: [
-      'sessionstart',
-      'precompact',
-      'archival',
-      'askuserquestion',
-      'tmuxautospawn',
-      'noaiattribution',
-    ],
-    disable: ['statusline', 'ralphloop', 'selfimprove'],
-    archivalDays: 30,
-    contextVerbosity: 'lite',
-  },
-  minimal: {
-    description: 'SessionStart + archival only',
-    enable: ['sessionstart', 'archival'],
-    disable: [
-      'precompact',
-      'statusline',
-      'ralphloop',
-      'selfimprove',
-      'askuserquestion',
-      'tmuxautospawn',
-    ],
-    archivalDays: 30,
-    contextVerbosity: 'lite',
-  },
-  none: {
-    description: 'Disable all AgileFlow features',
-    disable: [
-      'sessionstart',
-      'precompact',
-      'archival',
-      'statusline',
-      'ralphloop',
-      'selfimprove',
-      'askuserquestion',
-      'tmuxautospawn',
-      'noaiattribution',
-    ],
-  },
-  experimental: {
-    description:
-      '⚠️ CONTEXT HEAVY: Full command file injection during compact (uses more tokens but may be more reliable)',
-    enable: [
-      'sessionstart',
-      'precompact',
-      'archival',
-      'statusline',
-      'ralphloop',
-      'selfimprove',
-      'askuserquestion',
-      'tmuxautospawn',
-      'noaiattribution',
-    ],
-    archivalDays: 30,
-    experimental: {
-      fullFileInjection: true,
-      description:
-        'Instead of compact summaries, injects entire command files during context compaction',
-    },
-  },
-};
-
-const STATUSLINE_COMPONENTS = [
-  'agileflow',
-  'model',
-  'story',
-  'epic',
-  'wip',
-  'context',
-  'cost',
-  'git',
-];
-
-// Scripts directory
-const SCRIPTS_DIR = path.join(process.cwd(), '.agileflow', 'scripts');
-
-// ============================================================================
-// HELPER FUNCTIONS
-// ============================================================================
-
-const scriptExists = scriptName => fs.existsSync(path.join(SCRIPTS_DIR, scriptName));
-const getScriptPath = scriptName => `.agileflow/scripts/${scriptName}`;
-
-/**
- * Hash a file's content using SHA-256 (first 16 hex chars)
- * @param {string} filePath - Path to the file
- * @returns {string|null} 16-char hex hash, or null if file can't be read
- */
-function hashFile(filePath) {
-  try {
-    const content = fs.readFileSync(filePath, 'utf8');
-    return crypto.createHash('sha256').update(content).digest('hex').slice(0, 16);
-  } catch {
-    return null;
-  }
-}
-
-// ============================================================================
-// METADATA MANAGEMENT
-// ============================================================================
-
-/**
- * Update metadata file with provided updates
- * @param {object} updates - Updates to apply (archival, features, updates)
- * @param {string} version - Current version string
- */
-function updateMetadata(updates, version) {
-  const metaPath = 'docs/00-meta/agileflow-metadata.json';
-
-  if (!fs.existsSync(metaPath)) {
-    ensureDir('docs/00-meta');
-    writeJSON(metaPath, { version, created: new Date().toISOString() });
-  }
-
-  const meta = readJSON(metaPath) || {};
-
-  // Deep merge
-  if (updates.archival) {
-    meta.archival = { ...meta.archival, ...updates.archival };
-  }
-  if (updates.features) {
-    meta.features = meta.features || {};
-    Object.entries(updates.features).forEach(([key, value]) => {
-      meta.features[key] = { ...meta.features[key], ...value };
-    });
-  }
-  if (updates.updates) {
-    meta.updates = { ...meta.updates, ...updates.updates };
-  }
-
-  meta.version = version;
-  meta.updated = new Date().toISOString();
-
-  writeJSON(metaPath, meta);
-}
-
-// ============================================================================
-// ENABLE FEATURE
-// ============================================================================
-
-/**
- * Enable a feature
- * @param {string} feature - Feature name
- * @param {object} options - Options (archivalDays, mode, protectionLevel, isUpgrade)
- * @param {string} version - Current version string
- * @returns {boolean} Success
- */
-function enableFeature(feature, options = {}, version) {
-  const config = FEATURES[feature];
-  if (!config) {
-    error(`Unknown feature: ${feature}`);
-    return false;
-  }
-
-  ensureDir('.claude');
-
-  const settings = readJSON('.claude/settings.json') || {};
-  settings.hooks = settings.hooks || {};
-  settings.permissions = settings.permissions || { allow: [], deny: [], ask: [] };
-
-  // Handle hook-based features
-  if (config.hook) {
-    if (!enableHookFeature(feature, config, settings, version)) {
-      return false;
-    }
-  }
-
-  // Handle archival
-  if (feature === 'archival') {
-    if (!enableArchival(settings, options, version)) {
-      return false;
-    }
-  }
-
-  // Handle statusLine
-  if (feature === 'statusline') {
-    if (!enableStatusLine(settings, version)) {
-      return false;
-    }
-  }
-
-  // Handle autoupdate (metadata only)
-  if (feature === 'autoupdate') {
-    updateMetadata({ updates: { autoUpdate: true, showChangelog: true } }, version);
-    success('Auto-update enabled');
-    info('AgileFlow will check for updates every session and update automatically');
-    return true;
-  }
-
-  // Handle askuserquestion (metadata only)
-  if (feature === 'askuserquestion') {
-    const mode = options.mode || 'all';
-    updateMetadata(
-      {
-        features: {
-          askUserQuestion: {
-            enabled: true,
-            mode,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success(`AskUserQuestion enabled (mode: ${mode})`);
-    info('All commands will end with AskUserQuestion tool for guided interaction');
-    return true;
-  }
-
-  // Handle tmuxautospawn (metadata only)
-  if (feature === 'tmuxautospawn') {
-    updateMetadata(
-      {
-        features: {
-          tmuxAutoSpawn: {
-            enabled: true,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Tmux auto-spawn enabled');
-    info('Running "af" or "agileflow" will auto-start Claude in tmux session');
-    return true;
-  }
-
-  // Handle processcleanup (metadata only)
-  if (feature === 'processcleanup') {
-    updateMetadata(
-      {
-        features: {
-          processCleanup: {
-            enabled: true,
-            autoKill: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Process cleanup enabled');
-    info('Duplicate Claude processes will be detected and reported on session start');
-    info('Auto-kill is disabled by default for safety');
-    info('   Only affects processes in the SAME working directory (worktrees are safe)');
-    info('   Set AGILEFLOW_PROCESS_CLEANUP_AUTOKILL=1 to opt in to auto-kill at runtime');
-    return true;
-  }
-
-  // Handle claude flags (e.g., --dangerously-skip-permissions)
-  // Also sets permissions.defaultMode in .claude/settings.json
-  if (feature === 'claudeflags') {
-    const defaultFlags = options.flags || '--dangerously-skip-permissions';
-
-    // Map CLI flags to settings.json defaultMode values
-    const flagToMode = {
-      '--dangerously-skip-permissions': 'bypassPermissions',
-      '--permission-mode acceptEdits': 'acceptEdits',
-    };
-    const defaultMode = flagToMode[defaultFlags];
-
-    if (defaultMode) {
-      settings.permissions = settings.permissions || {};
-      settings.permissions.defaultMode = defaultMode;
-      writeJSON('.claude/settings.json', settings);
-      info(`Set permissions.defaultMode = "${defaultMode}" in .claude/settings.json`);
-    }
-
-    updateMetadata(
-      {
-        features: {
-          claudeFlags: {
-            enabled: true,
-            defaultFlags,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success(`Default Claude flags configured: ${defaultFlags}`);
-    info('These flags will be passed to Claude when launched via "af" or "agileflow"');
-    if (defaultMode) {
-      info('Restart Claude Code for the new default mode to take effect');
-    }
-    return true;
-  }
-
-  // Handle agent teams - set env var in .claude/settings.json
-  if (feature === 'agentteams') {
-    settings.env = settings.env || {};
-    settings.env.CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS = '1';
-
-    // Register PostToolUse hooks for native team observability
-    if (!settings.hooks) settings.hooks = {};
-    if (!settings.hooks.PostToolUse) settings.hooks.PostToolUse = [];
-    const observerCmd = 'node $CLAUDE_PROJECT_DIR/.agileflow/scripts/native-team-observer.js';
-    for (const matcher of ['TeamCreate', 'SendMessage', 'ListTeams']) {
-      const exists = settings.hooks.PostToolUse.some(
-        h =>
-          h.matcher === matcher &&
-          h.hooks?.some(hk => hk.command && hk.command.includes('native-team-observer'))
-      );
-      if (!exists) {
-        settings.hooks.PostToolUse.push({
-          matcher,
-          hooks: [{ type: 'command', command: observerCmd, timeout: 5000 }],
-        });
-      }
-    }
-
-    writeJSON('.claude/settings.json', settings);
-    updateMetadata(
-      {
-        features: {
-          agentTeams: {
-            enabled: true,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Native Agent Teams enabled');
-    info('Set CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS=1 in .claude/settings.json');
-    info('Registered PostToolUse hooks for native team observability');
-    info('Claude Code will use native TeamCreate/SendMessage tools');
-    info('Fallback: subagent mode (Task/TaskOutput) when native is unavailable');
-    return true;
-  }
-
-  // Handle shell aliases
-  if (feature === 'shellaliases') {
-    const result = enableShellAliases();
-    if (
-      result.configured.length > 0 ||
-      result.skipped.some(s => s.includes('already configured'))
-    ) {
-      updateMetadata(
-        {
-          features: {
-            shellAliases: {
-              enabled: true,
-              version,
-              at: new Date().toISOString(),
-              shells: result.configured,
-            },
-          },
-        },
-        version
-      );
-      if (result.configured.length > 0) {
-        success(`Shell aliases added to: ${result.configured.join(', ')}`);
-        info('Reload shell: source ~/.bashrc or source ~/.zshrc');
-        info('Then use "af" or "agileflow" to start Claude in tmux');
-      } else {
-        info('Shell aliases already configured');
-      }
-      return true;
-    }
-    if (result.skipped.length > 0) {
-      warn(`Shell aliases skipped: ${result.skipped.join(', ')}`);
-    }
-    return false;
-  }
-
-  // Handle CLAUDE.md reinforcement
-  if (feature === 'claudemdreinforcement') {
-    const result = enableClaudeMdReinforcement();
-    if (result.success) {
-      updateMetadata(
-        {
-          features: {
-            claudeMdReinforcement: {
-              enabled: true,
-              version,
-              at: new Date().toISOString(),
-            },
-          },
-        },
-        version
-      );
-      if (result.added) {
-        success('Added /babysit rules to CLAUDE.md');
-      } else {
-        info('CLAUDE.md already has /babysit rules');
-      }
-      return true;
-    }
-    error(`Failed to update CLAUDE.md: ${result.error}`);
-    return false;
-  }
-
-  // Handle damage control
-  if (feature === 'damagecontrol') {
-    return enableDamageControl(settings, options, version);
-  }
-
-  // Handle no AI attribution
-  if (feature === 'noaiattribution') {
-    return enableNoAiAttribution(settings, version);
-  }
-
-  // Handle browser QA (agentic browser testing)
-  if (feature === 'browserqa') {
-    return enableBrowserQa(version);
-  }
-
-  // Handle context verbosity (metadata only)
-  if (feature === 'contextverbosity') {
-    const mode = options.mode || 'lite';
-    const validModes = ['full', 'lite', 'minimal'];
-    if (!validModes.includes(mode)) {
-      error(`Invalid verbosity mode: ${mode}. Valid: ${validModes.join(', ')}`);
-      return false;
-    }
-    updateMetadata(
-      {
-        features: {
-          contextVerbosity: {
-            enabled: true,
-            mode,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success(`Context verbosity set to: ${mode}`);
-    if (mode === 'lite') {
-      info('Lite: summary table + git status + active stories + smart recommendations');
-      info('Skips: full file dumps, feature catalog, research content, ideation');
-    } else if (mode === 'minimal') {
-      info('Minimal: summary table only with story counts');
-      info('Skips: everything except compact summary');
-    }
-    return true;
-  }
-
-  const featureConfig = FEATURES[feature];
-  const contentHash = featureConfig?.script
-    ? hashFile(path.join(SCRIPTS_DIR, featureConfig.script))
-    : null;
-  writeJSON('.claude/settings.json', settings);
-  updateMetadata(
-    {
-      features: {
-        [feature]: {
-          enabled: true,
-          version,
-          ...(contentHash ? { contentHash } : {}),
-          at: new Date().toISOString(),
-        },
-      },
-    },
-    version
-  );
-  updateGitignore();
-
-  return true;
-}
-
-/**
- * Enable a hook-based feature
- */
-function enableHookFeature(feature, config, settings, version) {
-  const scriptPath = getScriptPath(config.script);
-
-  if (!scriptExists(config.script)) {
-    error(`Script not found: ${scriptPath}`);
-    info('Run "npx agileflow update" to reinstall scripts');
-    return false;
-  }
-
-  const absoluteScriptPath = path.join(process.cwd(), scriptPath);
-  const isStopHook = config.hook === 'Stop';
-  const command =
-    config.type === 'node'
-      ? `node ${absoluteScriptPath}${isStopHook ? ' 2>/dev/null || true' : ''}`
-      : `bash ${absoluteScriptPath}${isStopHook ? ' 2>/dev/null || true' : ''}`;
-
-  if (isStopHook) {
-    // Stop hooks stack - add to existing
-    if (!settings.hooks.Stop) {
-      settings.hooks.Stop = [{ matcher: '', hooks: [] }];
-    } else if (!Array.isArray(settings.hooks.Stop) || settings.hooks.Stop.length === 0) {
-      settings.hooks.Stop = [{ matcher: '', hooks: [] }];
-    } else if (!settings.hooks.Stop[0].hooks) {
-      settings.hooks.Stop[0].hooks = [];
-    }
-
-    const hasHook = settings.hooks.Stop[0].hooks.some(h => h.command?.includes(config.script));
-    if (!hasHook) {
-      settings.hooks.Stop[0].hooks.push({ type: 'command', command });
-      success(`Stop hook added (${config.script})`);
-    } else {
-      info(`${feature} already enabled`);
-    }
-  } else {
-    // Other hooks replace entirely
-    settings.hooks[config.hook] = [{ matcher: '', hooks: [{ type: 'command', command }] }];
-    success(`${config.hook} hook enabled (${config.script})`);
-  }
-
-  return true;
-}
-
-/**
- * Enable archival feature
- */
-function enableArchival(settings, options, version) {
-  const days = options.archivalDays || 30;
-  const scriptPath = getScriptPath('archive-completed-stories.sh');
-
-  if (!scriptExists('archive-completed-stories.sh')) {
-    error(`Script not found: ${scriptPath}`);
-    info('Run "npx agileflow update" to reinstall scripts');
-    return false;
-  }
-
-  const absoluteScriptPath = path.join(process.cwd(), scriptPath);
-  if (settings.hooks.SessionStart?.[0]?.hooks) {
-    const hasArchival = settings.hooks.SessionStart[0].hooks.some(h =>
-      h.command?.includes('archive-completed-stories')
-    );
-    if (!hasArchival) {
-      settings.hooks.SessionStart[0].hooks.push({
-        type: 'command',
-        command: `bash ${absoluteScriptPath} --quiet`,
-      });
-    }
-  }
-
-  updateMetadata({ archival: { enabled: true, threshold_days: days } }, version);
-  success(`Archival enabled (${days} days)`);
-  return true;
-}
-
-/**
- * Enable status line feature
- */
-function enableStatusLine(settings, version) {
-  const scriptPath = getScriptPath('agileflow-statusline.sh');
-
-  if (!scriptExists('agileflow-statusline.sh')) {
-    error(`Script not found: ${scriptPath}`);
-    info('Run "npx agileflow update" to reinstall scripts');
-    return false;
-  }
-
-  const absoluteScriptPath = path.join(process.cwd(), scriptPath);
-  settings.statusLine = {
-    type: 'command',
-    command: `bash ${absoluteScriptPath}`,
-    padding: 0,
-  };
-  success('Status line enabled');
-  return true;
-}
-
-/**
- * Enable damage control feature
- */
-function enableDamageControl(settings, options, version) {
-  const level = options.protectionLevel || 'standard';
-
-  // Verify all required scripts exist
-  const requiredScripts = [
-    'damage-control-bash.js',
-    'damage-control-edit.js',
-    'damage-control-write.js',
-  ];
-  for (const script of requiredScripts) {
-    if (!scriptExists(script)) {
-      error(`Script not found: ${getScriptPath(script)}`);
-      info('Run "npx agileflow update" to reinstall scripts');
-      return false;
-    }
-  }
-
-  // Deploy patterns file if not exists
-  const patternsDir = path.join(process.cwd(), '.agileflow', 'config');
-  const patternsDest = path.join(patternsDir, 'damage-control-patterns.yaml');
-  if (!fs.existsSync(patternsDest)) {
-    ensureDir(patternsDir);
-    const templatePath = path.join(
-      process.cwd(),
-      '.agileflow',
-      'templates',
-      'damage-control-patterns.yaml'
-    );
-    if (fs.existsSync(templatePath)) {
-      fs.copyFileSync(templatePath, patternsDest);
-      success('Deployed damage control patterns');
-    } else {
-      warn('No patterns template found - hooks will use defaults');
-    }
-  }
-
-  // Initialize PreToolUse array
-  if (!settings.hooks.PreToolUse) {
-    settings.hooks.PreToolUse = [];
-  }
-
-  const addPreToolUseHook = (matcher, scriptName) => {
-    const scriptFullPath = path.join(process.cwd(), '.agileflow', 'scripts', scriptName);
-    settings.hooks.PreToolUse = settings.hooks.PreToolUse.filter(h => h.matcher !== matcher);
-    settings.hooks.PreToolUse.push({
-      matcher,
-      hooks: [{ type: 'command', command: `node ${scriptFullPath}`, timeout: 5 }],
-    });
-  };
-
-  addPreToolUseHook('Bash', 'damage-control-bash.js');
-  addPreToolUseHook('Edit', 'damage-control-edit.js');
-  addPreToolUseHook('Write', 'damage-control-write.js');
-
-  success('Damage control PreToolUse hooks enabled');
-
-  const primaryHash = hashFile(path.join(SCRIPTS_DIR, 'damage-control-bash.js'));
-  updateMetadata(
-    {
-      features: {
-        damagecontrol: {
-          enabled: true,
-          protectionLevel: level,
-          version,
-          ...(primaryHash ? { contentHash: primaryHash } : {}),
-          at: new Date().toISOString(),
-        },
-      },
-    },
-    version
-  );
-
-  writeJSON('.claude/settings.json', settings);
-  updateGitignore();
-
-  return true;
-}
-
-/**
- * Enable no AI attribution feature
- */
-function enableNoAiAttribution(settings, version) {
-  const scriptName = 'strip-ai-attribution.js';
-
-  if (!scriptExists(scriptName)) {
-    error(`Script not found: ${getScriptPath(scriptName)}`);
-    info('Run "npx agileflow update" to reinstall scripts');
-    return false;
-  }
-
-  // Initialize PreToolUse array
-  if (!settings.hooks.PreToolUse) {
-    settings.hooks.PreToolUse = [];
-  }
-
-  const scriptFullPath = path.join(process.cwd(), '.agileflow', 'scripts', scriptName);
-
-  // Remove existing hook if any
-  for (const entry of settings.hooks.PreToolUse) {
-    if (entry.matcher === 'Bash' && Array.isArray(entry.hooks)) {
-      entry.hooks = entry.hooks.filter(h => !h.command?.includes('strip-ai-attribution'));
-    }
-  }
-  // Clean up empty entries
-  settings.hooks.PreToolUse = settings.hooks.PreToolUse.filter(
-    h => Array.isArray(h.hooks) && h.hooks.length > 0
-  );
-
-  // Add to existing Bash matcher or create new one
-  const bashEntry = settings.hooks.PreToolUse.find(h => h.matcher === 'Bash');
-  if (bashEntry) {
-    bashEntry.hooks.push({ type: 'command', command: `node ${scriptFullPath}`, timeout: 5 });
-  } else {
-    settings.hooks.PreToolUse.push({
-      matcher: 'Bash',
-      hooks: [{ type: 'command', command: `node ${scriptFullPath}`, timeout: 5 }],
-    });
-  }
-
-  const contentHash = hashFile(path.join(SCRIPTS_DIR, scriptName));
-  updateMetadata(
-    {
-      features: {
-        noaiattribution: {
-          enabled: true,
-          version,
-          ...(contentHash ? { contentHash } : {}),
-          at: new Date().toISOString(),
-        },
-      },
-    },
-    version
-  );
-
-  writeJSON('.claude/settings.json', settings);
-  updateGitignore();
-
-  success('AI attribution blocking enabled');
-  info('Git commits with AI footers (Co-Authored-By, etc.) will be blocked');
-  return true;
-}
-
-// ============================================================================
-// DISABLE FEATURE
-// ============================================================================
-
-/**
- * Disable a feature
- * @param {string} feature - Feature name
- * @param {string} version - Current version string
- * @returns {boolean} Success
- */
-function disableFeature(feature, version) {
-  const config = FEATURES[feature];
-  if (!config) {
-    error(`Unknown feature: ${feature}`);
-    return false;
-  }
-
-  if (!fs.existsSync('.claude/settings.json')) {
-    info(`${feature} already disabled (no settings file)`);
-    return true;
-  }
-
-  const settings = readJSON('.claude/settings.json');
-  if (!settings) return false;
-
-  // Disable hook
-  if (config.hook && settings.hooks?.[config.hook]) {
-    if (config.hook === 'Stop') {
-      // Stop hooks stack - remove only this script
-      if (settings.hooks.Stop?.[0]?.hooks) {
-        const before = settings.hooks.Stop[0].hooks.length;
-        settings.hooks.Stop[0].hooks = settings.hooks.Stop[0].hooks.filter(
-          h => !h.command?.includes(config.script)
-        );
-        const after = settings.hooks.Stop[0].hooks.length;
-
-        if (before > after) {
-          success(`Stop hook removed (${config.script})`);
-        }
-
-        if (settings.hooks.Stop[0].hooks.length === 0) {
-          delete settings.hooks.Stop;
-        }
-      }
-    } else {
-      delete settings.hooks[config.hook];
-      success(`${config.hook} hook disabled`);
-    }
-  }
-
-  // Disable archival
-  if (feature === 'archival') {
-    if (settings.hooks?.SessionStart?.[0]?.hooks) {
-      settings.hooks.SessionStart[0].hooks = settings.hooks.SessionStart[0].hooks.filter(
-        h => !h.command?.includes('archive-completed-stories')
-      );
-    }
-    updateMetadata({ archival: { enabled: false } }, version);
-    success('Archival disabled');
-  }
-
-  // Disable statusLine
-  if (feature === 'statusline' && settings.statusLine) {
-    delete settings.statusLine;
-    success('Status line disabled');
-  }
-
-  // Disable autoupdate
-  if (feature === 'autoupdate') {
-    updateMetadata({ updates: { autoUpdate: false } }, version);
-    success('Auto-update disabled');
-    return true;
-  }
-
-  // Disable askuserquestion
-  if (feature === 'askuserquestion') {
-    updateMetadata(
-      {
-        features: {
-          askUserQuestion: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('AskUserQuestion disabled');
-    info('Commands will end with natural text questions instead of AskUserQuestion tool');
-    return true;
-  }
-
-  // Disable tmuxautospawn
-  if (feature === 'tmuxautospawn') {
-    updateMetadata(
-      {
-        features: {
-          tmuxAutoSpawn: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Tmux auto-spawn disabled');
-    info('Running "af" or "agileflow" will start Claude directly without tmux');
-    return true;
-  }
-
-  // Disable processcleanup
-  if (feature === 'processcleanup') {
-    updateMetadata(
-      {
-        features: {
-          processCleanup: {
-            enabled: false,
-            autoKill: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Process cleanup disabled');
-    info('Duplicate Claude processes will only trigger a warning (no auto-kill)');
-    return true;
-  }
-
-  // Disable claude flags - also reset permissions.defaultMode in settings.json
-  if (feature === 'claudeflags') {
-    if (settings.permissions?.defaultMode) {
-      delete settings.permissions.defaultMode;
-      writeJSON('.claude/settings.json', settings);
-      info('Removed permissions.defaultMode from .claude/settings.json');
-    }
-    updateMetadata(
-      {
-        features: {
-          claudeFlags: {
-            enabled: false,
-            defaultFlags: '',
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Default Claude flags disabled');
-    info('Claude will launch with default permissions (prompts for each action)');
-    info('Restart Claude Code for the change to take effect');
-    return true;
-  }
-
-  // Disable agent teams - remove env var from .claude/settings.json
-  if (feature === 'agentteams') {
-    if (settings.env) {
-      delete settings.env.CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS;
-      if (Object.keys(settings.env).length === 0) {
-        delete settings.env;
-      }
-    }
-
-    // Remove PostToolUse hooks for native team observer
-    if (settings.hooks?.PostToolUse) {
-      settings.hooks.PostToolUse = settings.hooks.PostToolUse.filter(
-        h => !h.hooks?.some(hk => hk.command && hk.command.includes('native-team-observer'))
-      );
-      if (settings.hooks.PostToolUse.length === 0) {
-        delete settings.hooks.PostToolUse;
-      }
-      if (Object.keys(settings.hooks).length === 0) {
-        delete settings.hooks;
-      }
-    }
-
-    writeJSON('.claude/settings.json', settings);
-    updateMetadata(
-      {
-        features: {
-          agentTeams: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Native Agent Teams disabled');
-    info('Removed CLAUDE_CODE_EXPERIMENTAL_AGENT_TEAMS from .claude/settings.json');
-    info('Removed PostToolUse hooks for native team observer');
-    info('AgileFlow will use subagent mode (Task/TaskOutput) for multi-agent orchestration');
-    return true;
-  }
-
-  // Disable shell aliases
-  if (feature === 'shellaliases') {
-    const result = disableShellAliases();
-    updateMetadata(
-      {
-        features: {
-          shellAliases: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    if (result.removed.length > 0) {
-      success(`Shell aliases removed from: ${result.removed.join(', ')}`);
-      info('Reload shell: source ~/.bashrc or source ~/.zshrc');
-    } else {
-      info('No shell aliases found to remove');
-    }
-    return true;
-  }
-
-  // Disable CLAUDE.md reinforcement
-  if (feature === 'claudemdreinforcement') {
-    const result = disableClaudeMdReinforcement();
-    updateMetadata(
-      {
-        features: {
-          claudeMdReinforcement: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    if (result.removed) {
-      success('Removed /babysit rules from CLAUDE.md');
-    } else {
-      info('CLAUDE.md did not have /babysit rules');
-    }
-    return true;
-  }
-
-  // Disable damage control
-  if (feature === 'damagecontrol') {
-    if (settings.hooks?.PreToolUse && Array.isArray(settings.hooks.PreToolUse)) {
-      const before = settings.hooks.PreToolUse.length;
-      settings.hooks.PreToolUse = settings.hooks.PreToolUse.filter(h => {
-        const isDamageControlHook = h.hooks?.some(hk => hk.command?.includes('damage-control'));
-        return !isDamageControlHook;
-      });
-      const after = settings.hooks.PreToolUse.length;
-
-      if (before > after) {
-        success(`Removed ${before - after} damage control PreToolUse hook(s)`);
-      }
-
-      if (settings.hooks.PreToolUse.length === 0) {
-        delete settings.hooks.PreToolUse;
-      }
-    }
-
-    updateMetadata(
-      {
-        features: {
-          damagecontrol: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-
-    writeJSON('.claude/settings.json', settings);
-    success('Damage control disabled');
-    return true;
-  }
-
-  // Disable browser QA
-  if (feature === 'browserqa') {
-    updateMetadata(
-      {
-        features: {
-          browserqa: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Browser QA disabled');
-    info('Agentic browser testing deactivated');
-    return true;
-  }
-
-  // Disable context verbosity (reset to full)
-  if (feature === 'contextverbosity') {
-    updateMetadata(
-      {
-        features: {
-          contextVerbosity: {
-            enabled: false,
-            mode: 'full',
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    success('Context verbosity reset to full');
-    return true;
-  }
-
-  // Disable no AI attribution
-  if (feature === 'noaiattribution') {
-    if (settings.hooks?.PreToolUse && Array.isArray(settings.hooks.PreToolUse)) {
-      for (const entry of settings.hooks.PreToolUse) {
-        if (entry.matcher === 'Bash' && Array.isArray(entry.hooks)) {
-          entry.hooks = entry.hooks.filter(h => !h.command?.includes('strip-ai-attribution'));
-        }
-      }
-      // Clean up empty entries
-      settings.hooks.PreToolUse = settings.hooks.PreToolUse.filter(
-        h => Array.isArray(h.hooks) && h.hooks.length > 0
-      );
-      if (settings.hooks.PreToolUse.length === 0) {
-        delete settings.hooks.PreToolUse;
-      }
-    }
-
-    updateMetadata(
-      {
-        features: {
-          noaiattribution: {
-            enabled: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-
-    writeJSON('.claude/settings.json', settings);
-    success('AI attribution blocking disabled');
-    return true;
-  }
-
-  writeJSON('.claude/settings.json', settings);
-  updateMetadata(
-    { features: { [feature]: { enabled: false, version, at: new Date().toISOString() } } },
-    version
-  );
-
-  return true;
-}
-
-// ============================================================================
-// PROFILES
-// ============================================================================
-
-/**
- * Apply a preset profile
- * @param {string} profileName - Profile name
- * @param {object} options - Options
- * @param {string} version - Current version string
- * @returns {boolean} Success
- */
-function applyProfile(profileName, options = {}, version) {
-  const profile = PROFILES[profileName];
-  if (!profile) {
-    error(`Unknown profile: ${profileName}`);
-    log('Available: ' + Object.keys(PROFILES).join(', '));
-    return false;
-  }
-
-  header(`Applying "${profileName}" profile`);
-  log(profile.description, c.dim);
-
-  if (profile.enable) {
-    profile.enable.forEach(f =>
-      enableFeature(f, { archivalDays: profile.archivalDays || options.archivalDays }, version)
-    );
-  }
-
-  if (profile.disable) {
-    profile.disable.forEach(f => disableFeature(f, version));
-  }
-
-  // Apply context verbosity if specified in profile
-  if (profile.contextVerbosity) {
-    enableFeature('contextverbosity', { mode: profile.contextVerbosity }, version);
-  }
-
-  // Handle experimental profile settings
-  if (profile.experimental) {
-    updateMetadata(
-      {
-        features: {
-          experimental: {
-            enabled: true,
-            fullFileInjection: profile.experimental.fullFileInjection || false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-    if (profile.experimental.fullFileInjection) {
-      warn('⚠️  EXPERIMENTAL: Full file injection enabled');
-      info('   PreCompact will inject entire command files instead of compact summaries');
-      info('   This uses more context tokens but may provide better instruction adherence');
-    }
-  } else {
-    // Disable experimental mode if switching to non-experimental profile
-    updateMetadata(
-      {
-        features: {
-          experimental: {
-            enabled: false,
-            fullFileInjection: false,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-  }
-
-  return true;
-}
-
-// ============================================================================
-// STATUSLINE COMPONENTS
-// ============================================================================
-
-/**
- * Set statusline component visibility
- * @param {string[]} enableComponents - Components to enable
- * @param {string[]} disableComponents - Components to disable
- * @returns {boolean} Success
- */
-function setStatuslineComponents(enableComponents = [], disableComponents = []) {
-  const metaPath = 'docs/00-meta/agileflow-metadata.json';
-
-  if (!fs.existsSync(metaPath)) {
-    warn('No metadata file found - run with --enable=statusline first');
-    return false;
-  }
-
-  const meta = readJSON(metaPath);
-  if (!meta) {
-    error('Cannot parse metadata file');
-    return false;
-  }
-
-  meta.features = meta.features || {};
-  meta.features.statusline = meta.features.statusline || {};
-  meta.features.statusline.components = meta.features.statusline.components || {};
-
-  // Set defaults
-  STATUSLINE_COMPONENTS.forEach(comp => {
-    if (meta.features.statusline.components[comp] === undefined) {
-      meta.features.statusline.components[comp] = true;
-    }
-  });
-
-  // Enable specified
-  enableComponents.forEach(comp => {
-    if (STATUSLINE_COMPONENTS.includes(comp)) {
-      meta.features.statusline.components[comp] = true;
-      success(`Statusline component enabled: ${comp}`);
-    } else {
-      warn(`Unknown component: ${comp} (available: ${STATUSLINE_COMPONENTS.join(', ')})`);
-    }
-  });
-
-  // Disable specified
-  disableComponents.forEach(comp => {
-    if (STATUSLINE_COMPONENTS.includes(comp)) {
-      meta.features.statusline.components[comp] = false;
-      success(`Statusline component disabled: ${comp}`);
-    } else {
-      warn(`Unknown component: ${comp} (available: ${STATUSLINE_COMPONENTS.join(', ')})`);
-    }
-  });
-
-  meta.updated = new Date().toISOString();
-  writeJSON(metaPath, meta);
-
-  return true;
-}
-
-/**
- * List statusline components
- */
-function listStatuslineComponents() {
-  const metaPath = 'docs/00-meta/agileflow-metadata.json';
-
-  header('Statusline Components');
-
-  if (!fs.existsSync(metaPath)) {
-    log('  No configuration found (defaults: all enabled)', c.dim);
-    STATUSLINE_COMPONENTS.forEach(comp => {
-      log(`   ${comp}: enabled (default)`, c.green);
-    });
-    return;
-  }
-
-  const meta = readJSON(metaPath);
-  const components = meta?.features?.statusline?.components || {};
-
-  STATUSLINE_COMPONENTS.forEach(comp => {
-    const enabled = components[comp] !== false;
-    const icon = enabled ? '' : '';
-    const color = enabled ? c.green : c.dim;
-    log(`  ${icon} ${comp}: ${enabled ? 'enabled' : 'disabled'}`, color);
-  });
-
-  log('\nTo toggle: --show=<component> or --hide=<component>', c.dim);
-  log(`Components: ${STATUSLINE_COMPONENTS.join(', ')}`, c.dim);
-}
-
-// ============================================================================
-// MIGRATION
-// ============================================================================
-
-/**
- * Migrate settings to new format
- * @returns {boolean} Whether migration occurred
- */
-function migrateSettings() {
-  header('Migrating Settings...');
-
-  if (!fs.existsSync('.claude/settings.json')) {
-    warn('No settings.json to migrate');
-    return false;
-  }
-
-  const settings = readJSON('.claude/settings.json');
-  if (!settings) {
-    error('Cannot parse settings.json');
-    return false;
-  }
-
-  let migrated = false;
-
-  // Migrate hooks to new format
-  if (settings.hooks) {
-    ['SessionStart', 'PreCompact', 'UserPromptSubmit', 'Stop'].forEach(hookName => {
-      const hook = settings.hooks[hookName];
-      if (!hook) return;
-
-      if (typeof hook === 'string') {
-        const isNode = hook.includes('node ') || hook.endsWith('.js');
-        settings.hooks[hookName] = [
-          { matcher: '', hooks: [{ type: 'command', command: isNode ? hook : `bash ${hook}` }] },
-        ];
-        success(`Migrated ${hookName} from string format`);
-        migrated = true;
-      } else if (Array.isArray(hook) && hook.length > 0) {
-        const first = hook[0];
-        if (first.enabled !== undefined || first.command !== undefined) {
-          if (first.command) {
-            settings.hooks[hookName] = [
-              { matcher: '', hooks: [{ type: 'command', command: first.command }] },
-            ];
-            success(`Migrated ${hookName} from old object format`);
-            migrated = true;
-          }
-        } else if (first.matcher === undefined) {
-          settings.hooks[hookName] = [
-            { matcher: '', hooks: first.hooks || [{ type: 'command', command: 'echo "hook"' }] },
-          ];
-          success(`Migrated ${hookName} - added matcher`);
-          migrated = true;
-        }
-      }
-    });
-  }
-
-  // Migrate statusLine
-  if (settings.statusLine) {
-    if (typeof settings.statusLine === 'string') {
-      settings.statusLine = { type: 'command', command: settings.statusLine, padding: 0 };
-      success('Migrated statusLine from string format');
-      migrated = true;
-    } else if (!settings.statusLine.type) {
-      settings.statusLine.type = 'command';
-      if (settings.statusLine.refreshInterval) {
-        delete settings.statusLine.refreshInterval;
-        settings.statusLine.padding = 0;
-      }
-      success('Migrated statusLine - added type:command');
-      migrated = true;
-    }
-  }
-
-  if (migrated) {
-    fs.copyFileSync('.claude/settings.json', '.claude/settings.json.backup');
-    info('Backed up to .claude/settings.json.backup');
-    writeJSON('.claude/settings.json', settings);
-    success('Settings migrated successfully!');
-  } else {
-    info('No migration needed - formats are correct');
-  }
-
-  return migrated;
-}
-
-/**
- * Upgrade outdated features to latest version
- * @param {object} status - Status object from detectConfig
- * @param {string} version - Current version
- * @returns {boolean} Whether any features were upgraded
- */
-function upgradeFeatures(status, version) {
-  header('Upgrading Outdated Features...');
-
-  let upgraded = 0;
-
-  Object.entries(status.features).forEach(([feature, data]) => {
-    if (data.enabled && data.outdated) {
-      log(`\nUpgrading ${feature}...`, c.cyan);
-      if (
-        enableFeature(feature, { archivalDays: data.threshold || 30, isUpgrade: true }, version)
-      ) {
-        upgraded++;
-      }
-    }
-  });
-
-  if (upgraded === 0) {
-    info('No features needed upgrading');
-  } else {
-    success(`Upgraded ${upgraded} feature(s) to v${version}`);
-  }
-
-  return upgraded > 0;
-}
-
-// ============================================================================
-// STARTUP MODE (atomic command)
-// ============================================================================
-
-/**
- * Valid startup modes and their mappings
- */
-const STARTUP_MODES = {
-  'skip-permissions': {
-    flags: '--dangerously-skip-permissions',
-    defaultMode: 'bypassPermissions',
-    description: 'Skip all permission prompts (trusted mode)',
-  },
-  'accept-edits': {
-    flags: '--permission-mode acceptEdits',
-    defaultMode: 'acceptEdits',
-    description: 'Auto-accept file edits, prompt for other actions',
-  },
-  normal: {
-    flags: null,
-    defaultMode: null,
-    description: 'Standard Claude with permission prompts',
-  },
-  'no-claude': {
-    flags: null,
-    defaultMode: null,
-    description: 'Create worktree only, start Claude manually',
-  },
-};
-
-/**
- * Set startup mode atomically - updates BOTH metadata AND .claude/settings.json
- * This replaces the fragile two-step process of updating metadata + running --enable=claudeflags
- *
- * @param {string} mode - One of: skip-permissions, accept-edits, normal, no-claude
- * @param {string} version - Current version string
- * @returns {boolean} Success
- */
-function enableStartupMode(mode, version) {
-  const modeConfig = STARTUP_MODES[mode];
-  if (!modeConfig) {
-    error(`Unknown startup mode: ${mode}`);
-    log(`  Valid modes: ${Object.keys(STARTUP_MODES).join(', ')}`, c.dim);
-    return false;
-  }
-
-  ensureDir('.claude');
-  const settings = readJSON('.claude/settings.json') || {};
-  settings.permissions = settings.permissions || { allow: [], deny: [], ask: [] };
-
-  if (mode === 'normal' || mode === 'no-claude') {
-    // Remove defaultMode from settings
-    if (settings.permissions.defaultMode) {
-      delete settings.permissions.defaultMode;
-    }
-    writeJSON('.claude/settings.json', settings);
-
-    // Disable claudeflags + set defaultStartupMode in metadata (single write)
-    updateMetadata(
-      {
-        features: {
-          claudeFlags: {
-            enabled: false,
-            defaultFlags: '',
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-  } else {
-    // Set defaultMode in settings.json
-    settings.permissions.defaultMode = modeConfig.defaultMode;
-    writeJSON('.claude/settings.json', settings);
-
-    // Enable claudeflags + set defaultStartupMode in metadata (single write)
-    updateMetadata(
-      {
-        features: {
-          claudeFlags: {
-            enabled: true,
-            defaultFlags: modeConfig.flags,
-            version,
-            at: new Date().toISOString(),
-          },
-        },
-      },
-      version
-    );
-  }
-
-  // Set defaultStartupMode in metadata (updateMetadata already created file if missing)
-  const metaPath = 'docs/00-meta/agileflow-metadata.json';
-  const meta = readJSON(metaPath) || {};
-  meta.defaultStartupMode = mode;
-  meta.updated = new Date().toISOString();
-  writeJSON(metaPath, meta);
-
-  success(`Default startup mode set to: ${mode}`);
-  if (modeConfig.defaultMode) {
-    info(`Set permissions.defaultMode = "${modeConfig.defaultMode}" in .claude/settings.json`);
-  } else {
-    info('Removed permissions.defaultMode from .claude/settings.json');
-  }
-  info(`Metadata: defaultStartupMode = "${mode}"`);
-  if (mode !== 'normal') {
-    info('Restart Claude Code for the new mode to take effect');
-  }
-
-  return true;
-}
-
-// ============================================================================
-// SHELL ALIASES
-// ============================================================================
-
-const SHELL_ALIAS_MARKER = '# AgileFlow tmux wrapper';
-const SHELL_ALIAS_BLOCK = `
-${SHELL_ALIAS_MARKER}
-# Use 'af' or 'agileflow' for tmux, 'claude' stays normal
-alias af="bash .agileflow/scripts/af"
-alias agileflow="bash .agileflow/scripts/af"
-`;
-
-/**
- * Enable shell aliases by adding them to ~/.bashrc and ~/.zshrc
- * @returns {object} Result with configured and skipped shells
- */
-function enableShellAliases() {
-  const result = {
-    configured: [],
-    skipped: [],
-    error: null,
-  };
-
-  // Only set up aliases on Unix-like systems
-  if (process.platform === 'win32') {
-    result.skipped.push('Windows (not supported)');
-    return result;
-  }
-
-  const homeDir = os.homedir();
-  const rcFiles = [
-    { name: 'bash', path: path.join(homeDir, '.bashrc') },
-    { name: 'zsh', path: path.join(homeDir, '.zshrc') },
-  ];
-
-  // Lines that belong to AgileFlow alias blocks (old and new markers)
-  const ALIAS_BLOCK_LINES = [
-    '# AgileFlow tmux wrapper',
-    '# AgileFlow tmux shortcuts (claude stays normal)',
-    "# Use 'af' or 'agileflow' for tmux, 'claude' stays normal",
-    'alias af="bash .agileflow/scripts/af"',
-    'alias agileflow="bash .agileflow/scripts/af"',
-  ];
-
-  for (const rc of rcFiles) {
-    try {
-      // Check if RC file exists
-      if (!fs.existsSync(rc.path)) {
-        result.skipped.push(`${rc.name} (no ${path.basename(rc.path)})`);
-        continue;
-      }
-
-      const content = fs.readFileSync(rc.path, 'utf8');
-
-      // Check for ANY existing af alias (covers old and new markers)
-      if (content.includes('alias af="bash .agileflow/scripts/af"')) {
-        // Clean up: remove ALL existing alias block lines, then re-add one clean copy
-        const lines = content.split('\n');
-        const cleaned = lines.filter(line => {
-          const trimmed = line.trim();
-          return !ALIAS_BLOCK_LINES.includes(trimmed);
-        });
-        // Remove trailing empty lines from cleanup
-        while (cleaned.length > 0 && cleaned[cleaned.length - 1].trim() === '') {
-          cleaned.pop();
-        }
-        fs.writeFileSync(rc.path, cleaned.join('\n') + SHELL_ALIAS_BLOCK);
-        result.configured.push(rc.name);
-        continue;
-      }
-
-      // First time: just append
-      fs.appendFileSync(rc.path, SHELL_ALIAS_BLOCK);
-      result.configured.push(rc.name);
-    } catch (err) {
-      result.skipped.push(`${rc.name} (error: ${err.message})`);
-    }
-  }
-
-  return result;
-}
-
-/**
- * Disable shell aliases by removing them from ~/.bashrc and ~/.zshrc
- * @returns {object} Result with removed shells
- */
-function disableShellAliases() {
-  const result = {
-    removed: [],
-    skipped: [],
-  };
-
-  if (process.platform === 'win32') {
-    return result;
-  }
-
-  const homeDir = os.homedir();
-  const rcFiles = [
-    { name: 'bash', path: path.join(homeDir, '.bashrc') },
-    { name: 'zsh', path: path.join(homeDir, '.zshrc') },
-  ];
-
-  // Lines that belong to AgileFlow alias blocks (old and new markers)
-  const ALIAS_BLOCK_LINES = [
-    '# AgileFlow tmux wrapper',
-    '# AgileFlow tmux shortcuts (claude stays normal)',
-    "# Use 'af' or 'agileflow' for tmux, 'claude' stays normal",
-    'alias af="bash .agileflow/scripts/af"',
-    'alias agileflow="bash .agileflow/scripts/af"',
-  ];
-
-  for (const rc of rcFiles) {
-    try {
-      if (!fs.existsSync(rc.path)) {
-        continue;
-      }
-
-      const content = fs.readFileSync(rc.path, 'utf8');
-
-      // Check for any AgileFlow alias (covers old and new markers)
-      if (
-        !content.includes('alias af="bash .agileflow/scripts/af"') &&
-        !content.includes(SHELL_ALIAS_MARKER)
-      ) {
-        continue;
-      }
-
-      // Remove all alias block lines
-      const lines = content.split('\n');
-      const filteredLines = lines.filter(line => {
-        const trimmed = line.trim();
-        return !ALIAS_BLOCK_LINES.includes(trimmed);
-      });
-
-      // Remove trailing empty lines from cleanup
-      while (filteredLines.length > 0 && filteredLines[filteredLines.length - 1].trim() === '') {
-        filteredLines.pop();
-      }
-
-      fs.writeFileSync(rc.path, filteredLines.join('\n') + '\n', 'utf8');
-      result.removed.push(rc.name);
-    } catch (err) {
-      result.skipped.push(`${rc.name} (error: ${err.message})`);
-    }
-  }
-
-  return result;
-}
-
-// ============================================================================
-// CLAUDE.MD REINFORCEMENT
-// ============================================================================
-
-// ============================================================================
-// BROWSER QA
-// ============================================================================
-
-/**
- * Enable browser QA (agentic browser testing)
- * Creates evidence directory structure, deploys spec template, updates metadata
- */
-function enableBrowserQa(version) {
-  // Create evidence directory structure + screenshots dir for visual verification
-  const dirs = [
-    '.agileflow/ui-review',
-    '.agileflow/ui-review/runs',
-    '.agileflow/ui-review/specs',
-    '.agileflow/ui-review/baselines',
-    'screenshots',
-  ];
-  for (const dir of dirs) {
-    ensureDir(dir);
-  }
-
-  // Deploy spec template if not exists
-  const templateDest = path.join(
-    process.cwd(),
-    '.agileflow',
-    'ui-review',
-    'specs',
-    '_template.yaml'
-  );
-  if (!fs.existsSync(templateDest)) {
-    const templateSrc = path.join(process.cwd(), '.agileflow', 'templates', 'browser-qa-spec.yaml');
-    if (fs.existsSync(templateSrc)) {
-      fs.copyFileSync(templateSrc, templateDest);
-      success('Deployed browser-qa spec template');
-    } else {
-      info('No spec template found - create YAML specs manually in .agileflow/ui-review/specs/');
-    }
-  }
-
-  // Check for Playwright
-  let playwrightAvailable = false;
-  try {
-    require.resolve('playwright');
-    playwrightAvailable = true;
-  } catch {
-    // Not installed
-  }
-
-  if (!playwrightAvailable) {
-    warn('Playwright not found - install for browser automation:');
-    info('  npm install --save-optional playwright');
-    info('  npx playwright install chromium');
-  }
-
-  // Update gitignore - evidence runs should not be committed
-  updateGitignore();
-
-  updateMetadata(
-    {
-      features: {
-        browserqa: {
-          enabled: true,
-          version,
-          at: new Date().toISOString(),
-          playwright_detected: playwrightAvailable,
-        },
-      },
-    },
-    version
-  );
-
-  success('UI Testing enabled (agentic browser testing + visual verification)');
-  info('Evidence directory: .agileflow/ui-review/');
-  info('Screenshots directory: screenshots/ (for visual verification with VISUAL=true)');
-  info('Spec template: .agileflow/ui-review/specs/_template.yaml');
-  info('Agentic testing: /agileflow:browser-qa SCENARIO=<spec.yaml>');
-  info('Visual verification: /agileflow:babysit EPIC=EP-XXXX MODE=loop VISUAL=true');
-  if (playwrightAvailable) {
-    info('Playwright: detected');
-  }
-
-  return true;
-}
-
-const CLAUDE_MD_MARKER = '<!-- AGILEFLOW_BABYSIT_RULES -->';
-const CLAUDE_MD_CONTENT = `
-
-${CLAUDE_MD_MARKER}
-## AgileFlow /babysit Context Preservation Rules
-
-When \`/agileflow:babysit\` is active (check session-state.json), these rules are MANDATORY:
-
-1. **ALWAYS end responses with the AskUserQuestion tool** - Not text like "What next?" but the ACTUAL TOOL CALL
-2. **Use Plan Mode for non-trivial tasks** - Call \`EnterPlanMode\` before complex implementations
-3. **Delegate complex work to domain experts** - Use \`Task\` tool with appropriate \`subagent_type\`
-4. **Track progress with TaskCreate/TaskUpdate** - For any task with 3+ steps
-
-These rules persist across conversation compaction. Check \`docs/09-agents/session-state.json\` for active commands.
-${CLAUDE_MD_MARKER}
-`;
-
-/**
- * Enable CLAUDE.md reinforcement by adding babysit rules
- * @returns {object} Result with success, added, and error
- */
-function enableClaudeMdReinforcement() {
-  const claudeMdPath = path.join(process.cwd(), 'CLAUDE.md');
-
-  try {
-    let existingContent = '';
-    if (fs.existsSync(claudeMdPath)) {
-      existingContent = fs.readFileSync(claudeMdPath, 'utf8');
-    }
-
-    // Only append if marker doesn't exist
-    if (existingContent.includes(CLAUDE_MD_MARKER)) {
-      return { success: true, added: false };
-    }
-
-    fs.appendFileSync(claudeMdPath, CLAUDE_MD_CONTENT);
-    return { success: true, added: true };
-  } catch (err) {
-    return { success: false, error: err.message };
-  }
-}
-
-/**
- * Disable CLAUDE.md reinforcement by removing babysit rules
- * @returns {object} Result with removed flag
- */
-function disableClaudeMdReinforcement() {
-  const claudeMdPath = path.join(process.cwd(), 'CLAUDE.md');
-
-  if (!fs.existsSync(claudeMdPath)) {
-    return { removed: false };
-  }
-
-  try {
-    const content = fs.readFileSync(claudeMdPath, 'utf8');
-
-    if (!content.includes(CLAUDE_MD_MARKER)) {
-      return { removed: false };
-    }
-
-    // Remove the section between markers (inclusive)
-    const startIdx = content.indexOf(CLAUDE_MD_MARKER);
-    const endMarkerIdx = content.indexOf(CLAUDE_MD_MARKER, startIdx + CLAUDE_MD_MARKER.length);
-
-    if (startIdx === -1 || endMarkerIdx === -1) {
-      return { removed: false };
-    }
-
-    // Find the start of the line containing the first marker
-    let lineStart = content.lastIndexOf('\n', startIdx);
-    if (lineStart === -1) lineStart = 0;
-
-    // Find the end of the line containing the second marker
-    let lineEnd = content.indexOf('\n', endMarkerIdx + CLAUDE_MD_MARKER.length);
-    if (lineEnd === -1) lineEnd = content.length;
-
-    const newContent = content.slice(0, lineStart) + content.slice(lineEnd);
-
-    // Clean up any trailing newlines
-    fs.writeFileSync(claudeMdPath, newContent.trimEnd() + '\n', 'utf8');
-    return { removed: true };
-  } catch (err) {
-    return { removed: false, error: err.message };
-  }
-}
-
-module.exports = {
-  // Constants
-  FEATURES,
-  PROFILES,
-  STATUSLINE_COMPONENTS,
-  // Feature management
-  enableFeature,
-  disableFeature,
-  applyProfile,
-  updateMetadata,
-  // Statusline components
-  setStatuslineComponents,
-  listStatuslineComponents,
-  // Migration
-  migrateSettings,
-  upgradeFeatures,
-  // Helpers
-  scriptExists,
-  getScriptPath,
-  // Startup mode
-  enableStartupMode,
-  STARTUP_MODES,
-  // Shell aliases
-  enableShellAliases,
-  disableShellAliases,
-  // CLAUDE.md reinforcement
-  enableClaudeMdReinforcement,
-  disableClaudeMdReinforcement,
-};