agileflow 3.4.3 → 4.0.0-alpha.1

package/tools/cli/lib/content-injector.js

@@ -1,969 +0,0 @@
-/**
- * Content Injector - Dynamic content injection for AgileFlow files
- *
- * Supports template variables that get replaced at install time:
- *
- * COUNTS:
- *   {{COMMAND_COUNT}}  - Total number of commands
- *   {{AGENT_COUNT}}    - Total number of agents
- *   {{SKILL_COUNT}}    - Total number of skills
- *
- * LISTS:
- *   <!-- {{AGENT_LIST}} -->   - Full formatted agent list
- *   <!-- {{COMMAND_LIST}} --> - Full formatted command list
- *
- * TEMPLATES:
- *   <!-- {{SESSION_HARNESS}} -->       - Session harness protocol (generic)
- *   <!-- {{SESSION_HARNESS:AG-API}} --> - Session harness protocol (with agent ID)
- *   <!-- {{QUALITY_GATE_PRIORITIES}} --> - Quality gate priorities (CRITICAL/HIGH/MEDIUM)
- *
- * METADATA:
- *   {{VERSION}}        - AgileFlow version from package.json
- *   {{INSTALL_DATE}}   - Date of installation (YYYY-MM-DD)
- *
- * FOLDER REFERENCES:
- *   {agileflow_folder} - Name of the agileflow folder (e.g., .agileflow)
- *   {docs_folder}      - Name of the docs folder (e.g., docs, agileflow-docs)
- *   {project-root}     - Project root reference
- *
- * PATH INJECTION:
- *   When docsFolder is not 'docs', all path references like `docs/` are replaced
- *   with the actual folder name (e.g., `agileflow-docs/`).
- */
-
-const fs = require('fs');
-const path = require('path');
-
-// Use shared modules
-const { parseFrontmatter, normalizeTools } = require('../../../scripts/lib/frontmatter-parser');
-const { validatePath } = require('../../../lib/validate');
-const {
-  countCommands,
-  countAgents,
-  countSkills,
-  getCounts,
-} = require('../../../scripts/lib/counter');
-const {
-  sanitize,
-  sanitizeAgentData,
-  sanitizeCommandData,
-  validatePlaceholderValue,
-  detectInjectionAttempt,
-} = require('../../../lib/content-sanitizer');
-
-// =============================================================================
-// List Generation Functions
-// =============================================================================
-
-/**
- * Validate that a file path is within the expected directory.
- * Prevents reading files outside the expected scope.
- * Security: Symlinks are NOT allowed to prevent escape attacks.
- * @param {string} filePath - File path to validate
- * @param {string} baseDir - Expected base directory
- * @returns {boolean} True if path is safe
- */
-function isPathSafe(filePath, baseDir) {
-  // Security hardening (US-0104): Symlinks disabled to prevent escape attacks
-  const result = validatePath(filePath, baseDir, { allowSymlinks: false });
-  return result.ok;
-}
-
-/**
- * Derive agent category from name for compact grouping.
- * @param {string} name - Agent name
- * @returns {string} Category name
- */
-function categorizeAgent(name) {
-  // Audit analyzer families
-  const analyzerMatch = name.match(/^(logic|security|perf|test|completeness|legal)-analyzer-/);
-  if (analyzerMatch) {
-    const familyNames = {
-      logic: 'Logic',
-      security: 'Security',
-      perf: 'Performance',
-      test: 'Tests',
-      completeness: 'Completeness',
-      legal: 'Legal',
-    };
-    return `Audit - ${familyNames[analyzerMatch[1]] || analyzerMatch[1]}`;
-  }
-  // Consensus coordinators for audit families
-  const consensusMatch = name.match(/^(logic|security|perf|test|completeness|legal)-consensus$/);
-  if (consensusMatch) {
-    const familyNames = {
-      logic: 'Logic',
-      security: 'Security',
-      perf: 'Performance',
-      test: 'Tests',
-      completeness: 'Completeness',
-      legal: 'Legal',
-    };
-    return `Audit - ${familyNames[consensusMatch[1]] || consensusMatch[1]}`;
-  }
-  if (name.startsWith('council-')) return 'Council';
-  if (name.endsWith('-validator')) return 'Validation';
-  return 'Domain';
-}
-
-/**
- * Scan agents directory and generate compact category-grouped agent list
- * @param {string} agentsDir - Path to agents directory
- * @returns {string} Formatted agent list grouped by category
- */
-function generateAgentList(agentsDir) {
-  if (!fs.existsSync(agentsDir)) return '';
-
-  const files = fs.readdirSync(agentsDir).filter(f => f.endsWith('.md'));
-  const agents = [];
-
-  for (const file of files) {
-    const filePath = path.join(agentsDir, file);
-
-    // Validate path before reading to prevent traversal via symlinks or malicious names
-    if (!isPathSafe(filePath, agentsDir)) {
-      continue;
-    }
-
-    const content = fs.readFileSync(filePath, 'utf8');
-    const frontmatter = parseFrontmatter(content);
-
-    if (!frontmatter || Object.keys(frontmatter).length === 0) {
-      continue;
-    }
-
-    // Sanitize agent data to prevent injection attacks
-    const rawAgent = {
-      name: frontmatter.name || path.basename(file, '.md'),
-      description: frontmatter.description || '',
-      tools: normalizeTools(frontmatter.tools),
-      model: frontmatter.model || 'haiku',
-    };
-
-    const sanitizedAgent = sanitizeAgentData(rawAgent);
-
-    // Skip if sanitization produced invalid data
-    if (!sanitizedAgent.name || sanitizedAgent.name === 'unknown') {
-      continue;
-    }
-
-    agents.push(sanitizedAgent);
-  }
-
-  agents.sort((a, b) => a.name.localeCompare(b.name));
-
-  // Sanitize the count value
-  const safeCount = sanitize.count(agents.length);
-
-  // Group by category for compact output
-  const categories = {};
-  for (const agent of agents) {
-    const cat = categorizeAgent(agent.name);
-    if (!categories[cat]) categories[cat] = [];
-    categories[cat].push(agent.name);
-  }
-
-  let output = `**AVAILABLE AGENTS (${safeCount} total)**:\n\n`;
-
-  for (const [category, names] of Object.entries(categories)) {
-    output += `**${category}**: ${names.join(', ')}\n`;
-  }
-
-  return output;
-}
-
-/**
- * Scan commands directory and generate formatted command list
- * @param {string} commandsDir - Path to commands directory
- * @returns {string} Formatted command list
- */
-function generateCommandList(commandsDir) {
-  if (!fs.existsSync(commandsDir)) return '';
-
-  const commands = [];
-
-  // Scan main commands
-  const mainFiles = fs.readdirSync(commandsDir).filter(f => f.endsWith('.md'));
-  for (const file of mainFiles) {
-    const filePath = path.join(commandsDir, file);
-
-    // Validate path before reading
-    if (!isPathSafe(filePath, commandsDir)) {
-      continue;
-    }
-
-    const content = fs.readFileSync(filePath, 'utf8');
-    const frontmatter = parseFrontmatter(content);
-    const cmdName = path.basename(file, '.md');
-
-    if (!frontmatter || Object.keys(frontmatter).length === 0) {
-      continue;
-    }
-
-    // Sanitize command data to prevent injection attacks
-    const rawCommand = {
-      name: cmdName,
-      description: frontmatter.description || '',
-      argumentHint: frontmatter['argument-hint'] || '',
-    };
-
-    const sanitizedCommand = sanitizeCommandData(rawCommand);
-    if (!sanitizedCommand.name || sanitizedCommand.name === 'unknown') {
-      continue;
-    }
-
-    commands.push(sanitizedCommand);
-  }
-
-  // Scan subdirectories (e.g., session/)
-  const entries = fs.readdirSync(commandsDir, { withFileTypes: true });
-  for (const entry of entries) {
-    if (entry.isDirectory()) {
-      const subDir = path.join(commandsDir, entry.name);
-
-      // Validate subdirectory path
-      if (!isPathSafe(subDir, commandsDir)) {
-        continue;
-      }
-
-      const subFiles = fs.readdirSync(subDir).filter(f => f.endsWith('.md'));
-
-      for (const file of subFiles) {
-        const filePath = path.join(subDir, file);
-
-        // Validate file path within subdirectory
-        if (!isPathSafe(filePath, commandsDir)) {
-          continue;
-        }
-
-        const content = fs.readFileSync(filePath, 'utf8');
-        const frontmatter = parseFrontmatter(content);
-        const cmdName = `${entry.name}:${path.basename(file, '.md')}`;
-
-        if (!frontmatter || Object.keys(frontmatter).length === 0) {
-          continue;
-        }
-
-        // Sanitize command data
-        const rawCommand = {
-          name: cmdName,
-          description: frontmatter.description || '',
-          argumentHint: frontmatter['argument-hint'] || '',
-        };
-
-        const sanitizedCommand = sanitizeCommandData(rawCommand);
-        if (!sanitizedCommand.name || sanitizedCommand.name === 'unknown') {
-          continue;
-        }
-
-        commands.push(sanitizedCommand);
-      }
-    }
-  }
-
-  commands.sort((a, b) => a.name.localeCompare(b.name));
-
-  // Sanitize the count value
-  const safeCount = sanitize.count(commands.length);
-  let output = `Available commands (${safeCount} total):\n`;
-
-  commands.forEach(cmd => {
-    // All values are already sanitized by sanitizeCommandData
-    const argHint = cmd.argumentHint ? ` ${cmd.argumentHint}` : '';
-    output += `- \`/agileflow:${cmd.name}${argHint}\` - ${cmd.description}\n`;
-  });
-
-  return output;
-}
-
-/**
- * Generate a compact category summary for agents (no individual names).
- * Used by minimal mode and generators that want a discovery-oriented summary.
- * @param {string} agentsDir - Path to agents directory
- * @returns {string} Compact category summary with counts
- */
-function generateAgentSummary(agentsDir) {
-  if (!fs.existsSync(agentsDir)) return '';
-
-  const files = fs.readdirSync(agentsDir).filter(f => f.endsWith('.md'));
-  const agents = [];
-
-  for (const file of files) {
-    const filePath = path.join(agentsDir, file);
-    if (!isPathSafe(filePath, agentsDir)) continue;
-
-    const content = fs.readFileSync(filePath, 'utf8');
-    const frontmatter = parseFrontmatter(content);
-    if (!frontmatter || Object.keys(frontmatter).length === 0) continue;
-
-    const name = frontmatter.name || path.basename(file, '.md');
-    agents.push(name);
-  }
-
-  // Group by category, count per category
-  const categories = {};
-  for (const name of agents) {
-    const cat = categorizeAgent(name);
-    if (!categories[cat]) categories[cat] = 0;
-    categories[cat]++;
-  }
-
-  const safeCount = sanitize.count(agents.length);
-  let output = `**${safeCount} agents** across ${Object.keys(categories).length} categories:\n`;
-  for (const [category, count] of Object.entries(categories)) {
-    output += `- **${category}**: ${count} agents\n`;
-  }
-  output += `\nRun \`/agileflow:help agents\` or browse \`.agileflow/agents/\` for the full list.`;
-  return output;
-}
-
-/**
- * Generate a compact category summary for commands (no individual names).
- * Used by minimal mode and generators that want a discovery-oriented summary.
- * @param {string} commandsDir - Path to commands directory
- * @returns {string} Compact category summary with counts
- */
-function generateCommandSummary(commandsDir) {
-  if (!fs.existsSync(commandsDir)) return '';
-
-  const commands = [];
-
-  // Count main command files
-  const mainFiles = fs.readdirSync(commandsDir).filter(f => f.endsWith('.md'));
-  for (const file of mainFiles) {
-    const filePath = path.join(commandsDir, file);
-    if (!isPathSafe(filePath, commandsDir)) continue;
-
-    const content = fs.readFileSync(filePath, 'utf8');
-    const frontmatter = parseFrontmatter(content);
-    if (!frontmatter || Object.keys(frontmatter).length === 0) continue;
-    commands.push(path.basename(file, '.md'));
-  }
-
-  // Count subdirectory command files
-  const entries = fs.readdirSync(commandsDir, { withFileTypes: true });
-  for (const entry of entries) {
-    if (entry.isDirectory()) {
-      const subDir = path.join(commandsDir, entry.name);
-      if (!isPathSafe(subDir, commandsDir)) continue;
-
-      const subFiles = fs.readdirSync(subDir).filter(f => f.endsWith('.md'));
-      for (const file of subFiles) {
-        const filePath = path.join(subDir, file);
-        if (!isPathSafe(filePath, commandsDir)) continue;
-
-        const content = fs.readFileSync(filePath, 'utf8');
-        const frontmatter = parseFrontmatter(content);
-        if (!frontmatter || Object.keys(frontmatter).length === 0) continue;
-        commands.push(`${entry.name}:${path.basename(file, '.md')}`);
-      }
-    }
-  }
-
-  const safeCount = sanitize.count(commands.length);
-  return `**${safeCount} commands** available. Run \`/agileflow:help\` for the full list with descriptions.`;
-}
-
-// =============================================================================
-// Template Generation Functions
-// =============================================================================
-
-/**
- * Session harness template cache
- * @type {string|null}
- */
-let sessionHarnessTemplateCache = null;
-
-/**
- * Quality gate priorities template cache
- * @type {string|null}
- */
-let qualityGatePrioritiesCache = null;
-
-/**
- * Load session harness template from templates directory
- * @param {string} coreDir - Path to core directory
- * @returns {string} Template content or empty string if not found
- */
-function loadSessionHarnessTemplate(coreDir) {
-  // Return cached template if available
-  if (sessionHarnessTemplateCache !== null) {
-    return sessionHarnessTemplateCache;
-  }
-
-  const templatePath = path.join(coreDir, 'templates', 'session-harness-protocol.md');
-
-  if (!fs.existsSync(templatePath)) {
-    // Template not found, return empty string
-    sessionHarnessTemplateCache = '';
-    return sessionHarnessTemplateCache;
-  }
-
-  // Validate path is within core directory (security)
-  if (!isPathSafe(templatePath, coreDir)) {
-    sessionHarnessTemplateCache = '';
-    return sessionHarnessTemplateCache;
-  }
-
-  try {
-    sessionHarnessTemplateCache = fs.readFileSync(templatePath, 'utf8');
-    return sessionHarnessTemplateCache;
-  } catch (err) {
-    sessionHarnessTemplateCache = '';
-    return sessionHarnessTemplateCache;
-  }
-}
-
-/**
- * Generate session harness protocol content for a specific agent
- * @param {string} coreDir - Path to core directory
- * @param {string} agentId - Agent ID (e.g., "AG-API", "AG-UI")
- * @returns {string} Session harness content with agent ID substituted
- */
-function generateSessionHarnessContent(coreDir, agentId = 'AGENT') {
-  const template = loadSessionHarnessTemplate(coreDir);
-
-  if (!template) {
-    return '';
-  }
-
-  // Substitute agent ID in the template
-  // The template uses {AGENT_ID} as placeholder
-  return template.replace(/\{AGENT_ID\}/g, agentId);
-}
-
-/**
- * Clear the session harness template cache
- * Useful for testing or when template file changes
- */
-function clearSessionHarnessCache() {
-  sessionHarnessTemplateCache = null;
-}
-
-/**
- * Load quality gate priorities template from templates directory
- * @param {string} coreDir - Path to core directory
- * @returns {string} Template content or empty string if not found
- */
-function loadQualityGatePrioritiesTemplate(coreDir) {
-  // Return cached template if available
-  if (qualityGatePrioritiesCache !== null) {
-    return qualityGatePrioritiesCache;
-  }
-
-  const templatePath = path.join(coreDir, 'templates', 'quality-gate-priorities.md');
-
-  if (!fs.existsSync(templatePath)) {
-    qualityGatePrioritiesCache = '';
-    return qualityGatePrioritiesCache;
-  }
-
-  // Validate path is within core directory (security)
-  if (!isPathSafe(templatePath, coreDir)) {
-    qualityGatePrioritiesCache = '';
-    return qualityGatePrioritiesCache;
-  }
-
-  try {
-    qualityGatePrioritiesCache = fs.readFileSync(templatePath, 'utf8');
-    return qualityGatePrioritiesCache;
-  } catch (err) {
-    qualityGatePrioritiesCache = '';
-    return qualityGatePrioritiesCache;
-  }
-}
-
-/**
- * Generate quality gate priorities content for a specific agent
- * @param {string} coreDir - Path to core directory
- * @param {string} agentId - Agent ID (e.g., "AG-API", "AG-UI")
- * @returns {string} Quality gate priorities content with agent ID substituted
- */
-function generateQualityGatePrioritiesContent(coreDir, agentId = 'AGENT') {
-  const template = loadQualityGatePrioritiesTemplate(coreDir);
-
-  if (!template) {
-    return '';
-  }
-
-  // Substitute placeholders in the template
-  return template
-    .replace(/\{AGENT_ID\}/g, agentId)
-    .replace(/\{TIMESTAMP\}/g, new Date().toISOString())
-    .replace(/\{STORY_ID\}/g, 'US-XXXX');
-}
-
-/**
- * Clear the quality gate priorities template cache
- * Useful for testing or when template file changes
- */
-function clearQualityGatePrioritiesCache() {
-  qualityGatePrioritiesCache = null;
-}
-
-// =============================================================================
-// Preserve Rules Expansion Functions
-// =============================================================================
-
-/**
- * Preserve rules template cache
- * @type {Object|null}
- */
-let preserveRulesCache = null;
-
-/**
- * Load preserve rules definitions from templates directory
- * @param {string} coreDir - Path to core directory
- * @returns {Object} Rules object with category keys and rule arrays
- */
-function loadPreserveRules(coreDir) {
-  // Return cached rules if available
-  if (preserveRulesCache !== null) {
-    return preserveRulesCache;
-  }
-
-  const rulesPath = path.join(coreDir, 'templates', 'preserve-rules.json');
-
-  if (!fs.existsSync(rulesPath)) {
-    preserveRulesCache = {};
-    return preserveRulesCache;
-  }
-
-  // Validate path is within core directory (security)
-  if (!isPathSafe(rulesPath, coreDir)) {
-    preserveRulesCache = {};
-    return preserveRulesCache;
-  }
-
-  try {
-    const content = fs.readFileSync(rulesPath, 'utf8');
-    preserveRulesCache = JSON.parse(content);
-    return preserveRulesCache;
-  } catch (err) {
-    preserveRulesCache = {};
-    return preserveRulesCache;
-  }
-}
-
-/**
- * Expand preserve rules placeholders in content
- * Replaces "{{RULES:category}}" with actual rule strings from the template
- *
- * @param {string} content - Content with preserve rules placeholders
- * @param {string} coreDir - Path to core directory
- * @returns {string} Content with rules expanded
- */
-function expandPreserveRules(content, coreDir) {
-  const rules = loadPreserveRules(coreDir);
-
-  if (!rules || Object.keys(rules).length === 0) {
-    return content;
-  }
-
-  // Pattern matches: - "{{RULES:category}}" in YAML preserve_rules arrays
-  // We need to handle the YAML list context carefully
-  const pattern = /- "\{\{RULES:(\w+)\}\}"/g;
-
-  return content.replace(pattern, (match, category) => {
-    const ruleList = rules[category];
-
-    if (!ruleList || !Array.isArray(ruleList) || ruleList.length === 0) {
-      // Unknown category or empty, keep original placeholder as warning
-      return match;
-    }
-
-    // Sanitize rules before injecting
-    const sanitizedRules = ruleList.map(rule => {
-      // Escape double quotes in rule text
-      const escaped = String(rule).replace(/"/g, '\\"');
-      // Validate it's a reasonable rule string
-      if (escaped.length > 500) {
-        return escaped.substring(0, 500);
-      }
-      return escaped;
-    });
-
-    // Return expanded rules as YAML list items with proper indentation
-    // Each rule becomes: - "rule text"
-    return sanitizedRules.map(rule => `- "${rule}"`).join('\n    ');
-  });
-}
-
-/**
- * Clear the preserve rules template cache
- * Useful for testing or when template file changes
- */
-function clearPreserveRulesCache() {
-  preserveRulesCache = null;
-}
-
-// =============================================================================
-// Main Injection Function
-// =============================================================================
-
-/**
- * Inject all template variables into content
- * @param {string} content - Template content with placeholders
- * @param {Object} context - Context for replacements
- * @param {string} context.coreDir - Path to core directory (commands/, agents/, skills/)
- * @param {string} context.agileflowFolder - AgileFlow folder name
- * @param {string} context.docsFolder - Docs folder name (default: 'docs')
- * @param {string} context.version - AgileFlow version
- * @param {boolean} context.minimal - When true, skip AGENT_LIST and COMMAND_LIST injection
- *   (replaces with discovery pointers). Keeps session harness, quality gates, preserve_rules.
- * @returns {string} Content with all placeholders replaced
- */
-function injectContent(content, context = {}) {
-  const {
-    coreDir,
-    agileflowFolder = '.agileflow',
-    docsFolder = 'docs',
-    version = 'unknown',
-    minimal = false,
-  } = context;
-
-  let result = content;
-
-  // Multi-line list placeholders can corrupt YAML if injected into frontmatter.
-  // Keep frontmatter untouched for these placeholders and inject only in body.
-  const replaceInBodyOnly = (input, replacer) => {
-    const frontmatterMatch = input.match(/^(---\n[\s\S]*?\n---\n?)([\s\S]*)$/);
-    if (!frontmatterMatch) {
-      return replacer(input);
-    }
-
-    const frontmatter = frontmatterMatch[1];
-    const body = frontmatterMatch[2];
-    return `${frontmatter}${replacer(body)}`;
-  };
-
-  // Expand preserve rules placeholders first (YAML frontmatter processing)
-  if (coreDir && fs.existsSync(coreDir) && result.includes('{{RULES:')) {
-    result = expandPreserveRules(result, coreDir);
-  }
-
-  // Get counts if core directory is available
-  let counts = { commands: 0, agents: 0, skills: 0 };
-  if (coreDir && fs.existsSync(coreDir)) {
-    counts = getCounts(coreDir);
-  }
-
-  // Validate and sanitize all placeholder values before injection
-  const safeCommandCount = validatePlaceholderValue('COMMAND_COUNT', counts.commands).sanitized;
-  const safeAgentCount = validatePlaceholderValue('AGENT_COUNT', counts.agents).sanitized;
-  const safeSkillCount = validatePlaceholderValue('SKILL_COUNT', counts.skills).sanitized;
-  const safeVersion = validatePlaceholderValue('VERSION', version).sanitized;
-  const safeDate = validatePlaceholderValue('INSTALL_DATE', new Date()).sanitized;
-  const safeAgileflowFolder = validatePlaceholderValue(
-    'agileflow_folder',
-    agileflowFolder
-  ).sanitized;
-  const safeDocsFolder = validatePlaceholderValue('docs_folder', docsFolder).sanitized;
-
-  // Replace count placeholders (both formats: {{X}} and <!-- {{X}} -->)
-  result = result.replace(/\{\{COMMAND_COUNT\}\}/g, String(safeCommandCount));
-  result = result.replace(/\{\{AGENT_COUNT\}\}/g, String(safeAgentCount));
-  result = result.replace(/\{\{SKILL_COUNT\}\}/g, String(safeSkillCount));
-
-  // Replace metadata placeholders
-  result = result.replace(/\{\{VERSION\}\}/g, safeVersion);
-  result = result.replace(/\{\{INSTALL_DATE\}\}/g, safeDate);
-
-  // Replace list placeholders (only if core directory available)
-  // List generation already includes sanitization via sanitizeAgentData/sanitizeCommandData
-  if (coreDir && fs.existsSync(coreDir)) {
-    if (result.includes('{{AGENT_LIST}}')) {
-      let agentList;
-      if (minimal) {
-        // Minimal mode: replace with compact discovery pointer
-        agentList = `**Agents**: ${safeAgentCount} available. Run \`/agileflow:help agents\` or \`ls .agileflow/agents/\` to browse.`;
-      } else {
-        agentList = generateAgentList(path.join(coreDir, 'agents'));
-      }
-      result = replaceInBodyOnly(result, body => {
-        let updated = body.replace(/<!-- \{\{AGENT_LIST\}\} -->/g, agentList);
-        updated = updated.replace(/\{\{AGENT_LIST\}\}/g, agentList);
-        return updated;
-      });
-    }
-
-    if (result.includes('{{COMMAND_LIST}}')) {
-      let commandList;
-      if (minimal) {
-        // Minimal mode: replace with compact discovery pointer
-        commandList = `**Commands**: ${safeCommandCount} available. Run \`/agileflow:help\` or \`ls .agileflow/commands/\` to browse.`;
-      } else {
-        commandList = generateCommandList(path.join(coreDir, 'commands'));
-      }
-      result = replaceInBodyOnly(result, body => {
-        let updated = body.replace(/<!-- \{\{COMMAND_LIST\}\} -->/g, commandList);
-        updated = updated.replace(/\{\{COMMAND_LIST\}\}/g, commandList);
-        return updated;
-      });
-    }
-
-    // Replace session harness template placeholder
-    // Supports two formats:
-    //   <!-- {{SESSION_HARNESS}} -->        - Uses default agent ID
-    //   <!-- {{SESSION_HARNESS:AG-API}} --> - Uses specified agent ID
-    if (result.includes('SESSION_HARNESS')) {
-      // First, handle agent-specific format: <!-- {{SESSION_HARNESS:AG-XXX}} -->
-      const agentSpecificPattern = /<!-- \{\{SESSION_HARNESS:(AG-[A-Z]+)\}\} -->/g;
-      result = result.replace(agentSpecificPattern, (match, agentId) => {
-        return generateSessionHarnessContent(coreDir, agentId);
-      });
-
-      // Then, handle generic format: <!-- {{SESSION_HARNESS}} -->
-      // Try to extract agent ID from frontmatter name field if available
-      const genericPattern = /<!-- \{\{SESSION_HARNESS\}\} -->/g;
-      result = result.replace(genericPattern, () => {
-        // Try to get agent ID from frontmatter 'name' field
-        // Look for "name: agileflow-xxx" pattern in the content
-        const frontmatterMatch = result.match(/^---[\s\S]*?name:\s*(agileflow-)?(\w+)[\s\S]*?---/m);
-        let agentId = 'AGENT';
-        if (frontmatterMatch && frontmatterMatch[2]) {
-          // Convert agent name to uppercase agent ID format
-          // e.g., "api" -> "AG-API", "ui" -> "AG-UI"
-          agentId = `AG-${frontmatterMatch[2].toUpperCase()}`;
-        }
-        return generateSessionHarnessContent(coreDir, agentId);
-      });
-
-      // Also handle non-comment format: {{SESSION_HARNESS}}
-      result = result.replace(/\{\{SESSION_HARNESS\}\}/g, () => {
-        const frontmatterMatch = result.match(/^---[\s\S]*?name:\s*(agileflow-)?(\w+)[\s\S]*?---/m);
-        let agentId = 'AGENT';
-        if (frontmatterMatch && frontmatterMatch[2]) {
-          agentId = `AG-${frontmatterMatch[2].toUpperCase()}`;
-        }
-        return generateSessionHarnessContent(coreDir, agentId);
-      });
-    }
-
-    // Replace quality gate priorities template placeholder
-    // Supports: <!-- {{QUALITY_GATE_PRIORITIES}} -->
-    if (result.includes('QUALITY_GATE_PRIORITIES')) {
-      // Handle comment format: <!-- {{QUALITY_GATE_PRIORITIES}} -->
-      const qualityGatePattern = /<!-- \{\{QUALITY_GATE_PRIORITIES\}\} -->/g;
-      result = result.replace(qualityGatePattern, () => {
-        const frontmatterMatch = result.match(/^---[\s\S]*?name:\s*(agileflow-)?(\w+)[\s\S]*?---/m);
-        let agentId = 'AGENT';
-        if (frontmatterMatch && frontmatterMatch[2]) {
-          agentId = `AG-${frontmatterMatch[2].toUpperCase()}`;
-        }
-        return generateQualityGatePrioritiesContent(coreDir, agentId);
-      });
-
-      // Also handle non-comment format: {{QUALITY_GATE_PRIORITIES}}
-      result = result.replace(/\{\{QUALITY_GATE_PRIORITIES\}\}/g, () => {
-        const frontmatterMatch = result.match(/^---[\s\S]*?name:\s*(agileflow-)?(\w+)[\s\S]*?---/m);
-        let agentId = 'AGENT';
-        if (frontmatterMatch && frontmatterMatch[2]) {
-          agentId = `AG-${frontmatterMatch[2].toUpperCase()}`;
-        }
-        return generateQualityGatePrioritiesContent(coreDir, agentId);
-      });
-    }
-  }
-
-  // Replace folder placeholders with sanitized values
-  result = result.replace(/\{agileflow_folder\}/g, safeAgileflowFolder);
-  result = result.replace(/\{docs_folder\}/g, safeDocsFolder);
-  result = result.replace(/\{project-root\}/g, '{project-root}'); // Keep as-is for runtime
-
-  // Replace docs/ path references with actual folder if different from default
-  // This ensures all path references point to the correct folder
-  // Pattern matches: `docs/`, "docs/", 'docs/' but NOT word boundaries like "documents/"
-  if (safeDocsFolder !== 'docs') {
-    // Replace in code/path contexts: `docs/xxx`, "docs/xxx", 'docs/xxx'
-    result = result.replace(/`docs\//g, `\`${safeDocsFolder}/`);
-    result = result.replace(/"docs\//g, `"${safeDocsFolder}/`);
-    result = result.replace(/'docs\//g, `'${safeDocsFolder}/`);
-    // Replace standalone path references like: docs/00-meta, docs/09-agents
-    // Must be followed by a path component (letter, number, or dash)
-    result = result.replace(/\bdocs\/([0-9a-zA-Z_-])/g, `${safeDocsFolder}/$1`);
-  }
-
-  return result;
-}
-
-// =============================================================================
-// Section Processing Functions (Progressive Disclosure)
-// =============================================================================
-
-/**
- * Extract section names from content
- * @param {string} content - Content with section markers
- * @returns {string[]} Array of section names
- */
-function extractSectionNames(content) {
-  const sectionPattern = /<!-- SECTION: (\w+[-\w]*) -->/g;
-  const sections = [];
-  let match;
-  while ((match = sectionPattern.exec(content)) !== null) {
-    sections.push(match[1]);
-  }
-  return sections;
-}
-
-/**
- * Filter content to only include specified sections
- * Sections are marked with: <!-- SECTION: name --> ... <!-- END_SECTION -->
- *
- * @param {string} content - Content with section markers
- * @param {string[]} activeSections - Sections to include (empty = include all)
- * @returns {string} Content with only active sections
- */
-function filterSections(content, activeSections = []) {
-  // If no active sections specified, include all content
-  if (!activeSections || activeSections.length === 0) {
-    return content;
-  }
-
-  // Pattern matches: <!-- SECTION: name --> content <!-- END_SECTION -->
-  const sectionPattern = /<!-- SECTION: (\w+[-\w]*) -->([\s\S]*?)<!-- END_SECTION -->/g;
-
-  return content.replace(sectionPattern, (match, sectionName, sectionContent) => {
-    if (activeSections.includes(sectionName)) {
-      // Keep the section content, remove the markers
-      return sectionContent;
-    }
-    // Remove the entire section
-    return '';
-  });
-}
-
-/**
- * Remove all section markers but keep content
- * Used when no filtering is needed but markers should be cleaned
- *
- * @param {string} content - Content with section markers
- * @returns {string} Content without section markers
- */
-function stripSectionMarkers(content) {
-  // Remove section start markers
-  let result = content.replace(/<!-- SECTION: \w+[-\w]* -->\n?/g, '');
-  // Remove section end markers
-  result = result.replace(/<!-- END_SECTION -->\n?/g, '');
-  return result;
-}
-
-/**
- * Check if content has section markers
- * @param {string} content - Content to check
- * @returns {boolean} True if content has sections
- */
-function hasSections(content) {
-  return /<!-- SECTION: \w+[-\w]* -->/.test(content);
-}
-
-// =============================================================================
-// Utility Functions
-// =============================================================================
-
-/**
- * Check if content has any template variables
- * @param {string} content - Content to check
- * @returns {boolean} True if content has placeholders
- */
-function hasPlaceholders(content) {
-  const patterns = [
-    /\{\{COMMAND_COUNT\}\}/,
-    /\{\{AGENT_COUNT\}\}/,
-    /\{\{SKILL_COUNT\}\}/,
-    /\{\{VERSION\}\}/,
-    /\{\{INSTALL_DATE\}\}/,
-    /\{\{AGENT_LIST\}\}/,
-    /\{\{COMMAND_LIST\}\}/,
-    /\{\{SESSION_HARNESS\}\}/,
-    /\{\{QUALITY_GATE_PRIORITIES\}\}/,
-    /\{\{RULES:\w+\}\}/,
-    /\{agileflow_folder\}/,
-    /\{docs_folder\}/,
-  ];
-
-  return patterns.some(pattern => pattern.test(content));
-}
-
-/**
- * List all supported placeholders
- * @returns {Object} Placeholder documentation
- */
-function getPlaceholderDocs() {
-  return {
-    counts: {
-      '{{COMMAND_COUNT}}': 'Total number of slash commands',
-      '{{AGENT_COUNT}}': 'Total number of specialized agents',
-      '{{SKILL_COUNT}}': 'Total number of skills',
-    },
-    lists: {
-      '<!-- {{AGENT_LIST}} -->': 'Full formatted agent list with details',
-      '<!-- {{COMMAND_LIST}} -->': 'Full formatted command list',
-    },
-    templates: {
-      '<!-- {{SESSION_HARNESS}} -->':
-        'Session harness protocol (auto-detects agent ID from frontmatter)',
-      '<!-- {{SESSION_HARNESS:AG-API}} -->': 'Session harness protocol with explicit agent ID',
-      '<!-- {{QUALITY_GATE_PRIORITIES}} -->':
-        'Quality gate priorities with CRITICAL/HIGH/MEDIUM levels',
-    },
-    preserve_rules: {
-      '{{RULES:json_operations}}': 'Rules for safe JSON file modifications',
-      '{{RULES:file_preview}}': 'Rules for showing previews before writing',
-      '{{RULES:user_confirmation}}': 'Rules for using AskUserQuestion tool',
-      '{{RULES:task_tracking}}': 'Rules for using TaskCreate/TaskUpdate tool',
-      '{{RULES:bus_messaging}}': 'Rules for bus message logging',
-      '{{RULES:plan_mode}}': 'Rules for using EnterPlanMode',
-      '{{RULES:commit_approval}}': 'Rules about git commits',
-      '{{RULES:delegation}}': 'Rules for expert delegation',
-      '{{RULES:research_first}}': 'Rules for checking research before starting',
-      '{{RULES:status_updates}}': 'Rules for updating status.json',
-    },
-    metadata: {
-      '{{VERSION}}': 'AgileFlow version from package.json',
-      '{{INSTALL_DATE}}': 'Installation date (YYYY-MM-DD)',
-    },
-    folders: {
-      '{agileflow_folder}': 'Name of the AgileFlow folder',
-      '{docs_folder}': 'Name of the docs folder (docs/ paths auto-replaced when different)',
-      '{project-root}': 'Project root reference (kept as-is)',
-    },
-  };
-}
-
-module.exports = {
-  // Count functions
-  countCommands,
-  countAgents,
-  countSkills,
-  getCounts,
-
-  // List generation
-  generateAgentList,
-  generateCommandList,
-
-  // Summary generation (compact, for minimal mode)
-  generateAgentSummary,
-  generateCommandSummary,
-
-  // Template generation
-  generateSessionHarnessContent,
-  clearSessionHarnessCache,
-  generateQualityGatePrioritiesContent,
-  clearQualityGatePrioritiesCache,
-
-  // Preserve rules expansion
-  expandPreserveRules,
-  clearPreserveRulesCache,
-
-  // Main injection
-  injectContent,
-  hasPlaceholders,
-  getPlaceholderDocs,
-
-  // Section processing (progressive disclosure)
-  extractSectionNames,
-  filterSections,
-  stripSectionMarkers,
-  hasSections,
-};