agentdb 3.0.0-alpha.2 → 3.0.0-alpha.20

package/dist/src/cli/agentdb-cli.d.ts

@@ -8,7 +8,6 @@
  * - Nightly learner automation
  * - Database management
  */
-import { MetadataFilters } from '../controllers/MetadataFilter.js';
 declare class AgentDBCLI {
     db?: any;
     private causalGraph?;
@@ -84,7 +83,7 @@ declare class AgentDBCLI {
         onlySuccesses?: boolean;
         minReward?: number;
         synthesizeContext?: boolean;
-        filters?: MetadataFilters;
+        filters?: any;
     }): Promise<void>;
     reflexionRetrieveJson(params: {
         task: string;
@@ -92,7 +91,7 @@ declare class AgentDBCLI {
         onlyFailures?: boolean;
         onlySuccesses?: boolean;
         minReward?: number;
-    }): Promise<unknown[]>;
+    }): Promise<any[]>;
     reflexionGetCritiqueSummary(params: {
         task: string;
         k?: number;

package/dist/src/cli/agentdb-cli.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"agentdb-cli.d.ts","sourceRoot":"","sources":["../../../src/cli/agentdb-cli.ts"],"names":[],"mappings":";AACA;;;;;;;;GAQG;AAyHH,cAAM,UAAU;IACP,EAAE,CAAC,EAAE,GAAG,CAAC;IAChB,OAAO,CAAC,WAAW,CAAC,CAAoB;IACxC,OAAO,CAAC,YAAY,CAAC,CAAe;IACpC,OAAO,CAAC,iBAAiB,CAAC,CAAoB;IAC9C,OAAO,CAAC,cAAc,CAAC,CAAiB;IACxC,OAAO,CAAC,SAAS,CAAC,CAAkB;IACpC,OAAO,CAAC,MAAM,CAAC,CAAe;IAC9B,OAAO,CAAC,QAAQ,CAAC,CAAmB;IAGpC,OAAO,CAAC,UAAU,CAAC,CAAa;IAChC,OAAO,CAAC,UAAU,CAAC,CAAa;IAChC,OAAO,CAAC,eAAe,CAAC,CAAkB;IAEpC,UAAU,CAAC,MAAM,GAAE,MAAuB,GAAG,OAAO,CAAC,IAAI,CAAC;IAmD1D,aAAa,CAAC,MAAM,EAAE;QAC1B,KAAK,EAAE,MAAM,CAAC;QACd,MAAM,EAAE,MAAM,CAAC;QACf,MAAM,EAAE,MAAM,CAAC;QACf,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,GAAG,OAAO,CAAC,IAAI,CAAC;IAwBX,sBAAsB,CAAC,MAAM,EAAE;QACnC,IAAI,EAAE,MAAM,CAAC;QACb,KAAK,EAAE,MAAM,CAAC;QACd,MAAM,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC,IAAI,CAAC;IAkCX,8BAA8B,CAAC,MAAM,EAAE;QAC3C,YAAY,EAAE,MAAM,CAAC;QACrB,WAAW,EAAE,OAAO,CAAC;QACrB,OAAO,EAAE,MAAM,CAAC;QAChB,OAAO,CAAC,EAAE,MAAM,CAAC;KAClB,GAAG,OAAO,CAAC,IAAI,CAAC;IA8BX,yBAAyB,CAAC,YAAY,EAAE,MAAM,GAAG,OAAO,CAAC,IAAI,CAAC;IAsC9D,WAAW,CAAC,MAAM,EAAE;QACxB,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC,IAAI,CAAC;IAiCX,qBAAqB,CAAC,MAAM,EAAE;QAClC,KAAK,EAAE,MAAM,CAAC;QACd,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,KAAK,CAAC,EAAE,MAAM,CAAC;KAChB,GAAG,OAAO,CAAC,IAAI,CAAC;IA0CX,UAAU,CAAC,MAAM,EAAE;QACvB,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,MAAM,CAAC,EAAE,OAAO,CAAC;KAClB,GAAG,OAAO,CAAC,IAAI,CAAC;IAgCX,YAAY,CAAC,MAAM,EAAE;QACzB,aAAa,CAAC,EAAE,MAAM,CAAC;QACvB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,GAAG,OAAO,CAAC,IAAI,CAAC;IAqBX,qBAAqB,CAAC,MAAM,EAAE;QAClC,SAAS,EAAE,MAAM,CAAC;QAClB,IAAI,EAAE,MAAM,CAAC;QACb,KAAK,CAAC,EAAE,MAAM,CAAC;QACf,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,QAAQ,CAAC,EAAE,MAAM,CAAC;QAClB,MAAM,EAAE,MAAM,CAAC;QACf,OAAO,EAAE,OAAO,CAAC;QACjB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,GAAG,OAAO,CAAC,IAAI,CAAC;IAmBX,iBAAiB,CAAC,MAAM,EAAE;QAC9B,IAAI,EAAE,MAAM,CAAC;QACb,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,YAAY,CAAC,EAAE,OAAO,CAAC;QACvB,aAAa,CAAC,EAAE,OAAO,CAAC;QACxB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,iBAAiB,CAAC,EAAE,OAAO,CAAC;QAC5B,OAAO,CAAC,EAAE,GAAG,CAAC;KACf,GAAG,OAAO,CAAC,IAAI,CAAC;IAmFX,qBAAqB,CAAC,MAAM,EAAE;QAClC,IAAI,EAAE,MAAM,CAAC;QACb,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,YAAY,CAAC,EAAE,OAAO,CAAC;QACvB,aAAa,CAAC,EAAE,OAAO,CAAC;QACxB,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,GAAG,OAAO,CAAC,GAAG,EAAE,CAAC;IAcZ,2BAA2B,CAAC,MAAM,EAAE;QACxC,IAAI,EAAE,MAAM,CAAC;QACb,CAAC,CAAC,EAAE,MAAM,CAAC;KACZ,GAAG,OAAO,CAAC,IAAI,CAAC;IAiBX,cAAc,CAAC,MAAM,EAAE;QAC3B,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,UAAU,CAAC,EAAE,MAAM,CAAC;QACpB,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,GAAG,OAAO,CAAC,IAAI,CAAC;IAkBX,WAAW,CAAC,MAAM,EAAE;QACxB,IAAI,EAAE,MAAM,CAAC;QACb,WAAW,EAAE,MAAM,CAAC;QACpB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,GAAG,OAAO,CAAC,IAAI,CAAC;IAyBX,WAAW,CAAC,MAAM,EAAE;QACxB,IAAI,EAAE,MAAM,CAAC;QACb,CAAC,CAAC,EAAE,MAAM,CAAC;QACX,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,GAAG,OAAO,CAAC,IAAI,CAAC;IAgCX,gBAAgB,CAAC,MAAM,EAAE;QAC7B,WAAW,CAAC,EAAE,MAAM,CAAC;QACrB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,eAAe,CAAC,EAAE,OAAO,CAAC;KAC3B,GAAG,OAAO,CAAC,IAAI,CAAC;IAuDX,UAAU,CAAC,MAAM,EAAE;QACvB,OAAO,CAAC,EAAE,MAAM,CAAC;QACjB,cAAc,CAAC,EAAE,MAAM,CAAC;QACxB,UAAU,CAAC,EAAE,MAAM,CAAC;KACrB,GAAG,OAAO,CAAC,IAAI,CAAC;IAkBX,eAAe,CAAC,MAAM,EAAE;QAC5B,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,GAAG,CAAC,EAAE,MAAM,CAAC;QACb,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,cAAc,CAAC,EAAE,MAAM,CAAC;KACzB,GAAG,OAAO,CAAC,IAAI,CAAC;IAkHX,WAAW,CAAC,MAAM,EAAE;QACxB,IAAI,EAAE,MAAM,CAAC;QACb,IAAI,EAAE,MAAM,CAAC;QACb,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,IAAI,CAAC,EAAE,MAAM,CAAC;QACd,OAAO,CAAC,EAAE,MAAM,CAAC;KAClB,GAAG,OAAO,CAAC,IAAI,CAAC;IA0FX,QAAQ,CAAC,MAAM,EAAE;QACrB,MAAM,EAAE,MAAM,CAAC;QACf,WAAW,CAAC,EAAE,OAAO,CAAC;QACtB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,SAAS,CAAC,EAAE,MAAM,CAAC;KACpB,GAAG,OAAO,CAAC,IAAI,CAAC;IAyHjB,OAAO,CAAC,yBAAyB;IAiF3B,QAAQ,CAAC,MAAM,EAAE;QACrB,MAAM,EAAE,MAAM,CAAC;QACf,WAAW,CAAC,EAAE,OAAO,CAAC;QACtB,MAAM,CAAC,EAAE,MAAM,CAAC;QAChB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,SAAS,CAAC,EAAE,MAAM,CAAC;QACnB,gBAAgB,CAAC,EAAE,YAAY,GAAG,aAAa,GAAG,aAAa,CAAC;KACjE,GAAG,OAAO,CAAC,IAAI,CAAC;IA4IjB,OAAO,CAAC,sBAAsB;IAqCxB,UAAU,IAAI,OAAO,CAAC,IAAI,CAAC;IA4GjC,OAAO,CAAC,qBAAqB;IAsD7B,OAAO,CAAC,iBAAiB;IAOzB,OAAO,CAAC,iBAAiB;IAezB,OAAO,CAAC,eAAe;IAsBvB,OAAO,CAAC,OAAO;IAcT,OAAO,IAAI,OAAO,CAAC,IAAI,CAAC;CAmB/B;AAmxDD,OAAO,EAAE,UAAU,EAAE,CAAC"}

package/dist/src/cli/agentdb-cli.js

@@ -9,6 +9,7 @@
  * - Database management
  */
 import { createDatabase } from '../db-fallback.js';
+import { parseJsonStrict } from '../security/input-validation.js';
 import { CausalMemoryGraph } from '../controllers/CausalMemoryGraph.js';
 import { CausalRecall } from '../controllers/CausalRecall.js';
 import { ExplainableRecall } from '../controllers/ExplainableRecall.js';
@@ -31,7 +32,6 @@ import { attentionCommand } from './commands/attention.js';
 import { learnCommand } from './commands/learn.js';
 import { routeCommand } from './commands/route.js';
 import { hyperbolicCommand } from './commands/hyperbolic.js';
-import { rvfCommand } from './commands/rvf.js';
 import * as fs from 'fs';
 import * as path from 'path';
 import * as zlib from 'zlib';
@@ -114,7 +114,6 @@ class ProgressBar {
     }
 }
 class AgentDBCLI {
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any
     db; // Database instance from createDatabase (public for init command)
     causalGraph;
     causalRecall;
@@ -134,46 +133,14 @@ class AgentDBCLI {
         this.db.pragma('journal_mode = WAL');
         this.db.pragma('synchronous = NORMAL');
         this.db.pragma('cache_size = -64000');
-        // Load both schemas: main schema (episodes, skills) + frontier schema (causal)
-        const schemaFiles = ['schema.sql', 'frontier-schema.sql'];
-        const basePaths = [
-            path.join(__dirname, '../schemas'), // dist/cli/../schemas (local dev)
-            path.join(__dirname, '../../schemas'), // dist/schemas (published package)
-            path.join(__dirname, '../../src/schemas'), // dist/cli/../../src/schemas
-            path.join(process.cwd(), 'dist/schemas'), // current/dist/schemas
-            path.join(process.cwd(), 'src/schemas'), // current/src/schemas
-            path.join(process.cwd(), 'node_modules/agentdb/dist/schemas') // installed package
-        ];
-        let schemasLoaded = 0;
-        for (const basePath of basePaths) {
-            if (fs.existsSync(basePath)) {
-                for (const schemaFile of schemaFiles) {
-                    const schemaPath = path.join(basePath, schemaFile);
-                    if (fs.existsSync(schemaPath)) {
-                        try {
-                            const schema = fs.readFileSync(schemaPath, 'utf-8');
-                            this.db.exec(schema);
-                            schemasLoaded++;
-                        }
-                        catch (error) {
-                            log.error(`Failed to load schema from ${schemaPath}: ${error.message}`);
-                        }
-                    }
-                }
-                // If we found at least one schema in this path, we're done
-                if (schemasLoaded > 0)
-                    break;
-            }
-        }
-        if (schemasLoaded === 0) {
-            log.warning('Schema files not found, database may not be initialized properly');
-            log.info('__dirname: ' + __dirname);
-            log.info('process.cwd(): ' + process.cwd());
-            log.info('Tried base paths:');
-            basePaths.forEach(p => {
-                log.info(`  - ${p} (exists: ${fs.existsSync(p)})`);
-            });
-        }
+        // Load both schemas from the inlined constants — bundled into the package,
+        // so globally-installed CLIs and weird __dirname resolutions just work.
+        // (Was a long __dirname/cwd dance that failed for `npm install -g`. #1)
+        const { SCHEMA_SQL, FRONTIER_SCHEMA_SQL } = await import('../schemas/inline.js');
+        if (SCHEMA_SQL)
+            this.db.exec(SCHEMA_SQL);
+        if (FRONTIER_SCHEMA_SQL)
+            this.db.exec(FRONTIER_SCHEMA_SQL);
         // Initialize embedding service
         this.embedder = new EmbeddingService({
             model: 'Xenova/all-MiniLM-L6-v2',
@@ -264,7 +231,12 @@ class AgentDBCLI {
             isTreatment: params.isTreatment,
             outcomeValue: params.outcome,
             outcomeType: 'reward',
-            context: params.context && params.context.trim() ? JSON.parse(params.context) : undefined
+            // #6 §C.1 — strict parse so a crafted/malformed `--context` JSON
+            // surfaces as a ValidationError, not an unhandled SyntaxError leaking
+            // a stack trace.
+            context: params.context && params.context.trim()
+                ? parseJsonStrict(params.context, 'context')
+                : undefined
         });
         // Save database to persist changes
         this.db.save();
@@ -281,8 +253,8 @@ class AgentDBCLI {
             throw new Error(`Experiment ${experimentId} not found`);
         }
         log.info(`Experiment: ${experiment.hypothesis || 'Unknown'}`);
-        log.info(`Treatment Mean: ${typeof experiment.treatment_mean === 'number' ? experiment.treatment_mean.toFixed(3) : 'N/A'}`);
-        log.info(`Control Mean: ${typeof experiment.control_mean === 'number' ? experiment.control_mean.toFixed(3) : 'N/A'}`);
+        log.info(`Treatment Mean: ${experiment.treatment_mean?.toFixed(3) || 'N/A'}`);
+        log.info(`Control Mean: ${experiment.control_mean?.toFixed(3) || 'N/A'}`);
         log.success(`Uplift: ${result?.uplift?.toFixed(3) || 'N/A'}`);
         if (result?.confidenceInterval && result.confidenceInterval.length === 2) {
             log.info(`95% CI: [${result.confidenceInterval[0]?.toFixed(3) || 'N/A'}, ${result.confidenceInterval[1]?.toFixed(3) || 'N/A'}]`);
@@ -295,9 +267,7 @@ class AgentDBCLI {
         if (!counts) {
             throw new Error(`Failed to get observation counts for experiment ${experimentId}`);
         }
-        const totalCount = counts.total || 0;
-        const treatmentCount = counts.treatment || 0;
-        log.info(`Sample Sizes: ${treatmentCount} treatment, ${totalCount - treatmentCount} control`);
+        log.info(`Sample Sizes: ${counts.treatment || 0} treatment, ${(counts.total || 0) - (counts.treatment || 0)} control`);
         if (result && result.pValue !== undefined && result.pValue < 0.05) {
             log.success('Result is statistically significant (p < 0.05)');
         }
@@ -379,10 +349,9 @@ class AgentDBCLI {
         if (discovered.length > 0) {
             console.log('\n' + '═'.repeat(80));
             discovered.slice(0, 10).forEach((edge, i) => {
-                const e = edge;
-                console.log(`${colors.bright}#${i + 1}: ${e.cause} → ${e.effect}${colors.reset}`);
-                console.log(`  Uplift: ${colors.green}${e.uplift?.toFixed(3)}${colors.reset} (CI: ${e.confidence?.toFixed(2)})`);
-                console.log(`  Sample size: ${e.sampleSize}`);
+                console.log(`${colors.bright}#${i + 1}: ${edge.cause} → ${edge.effect}${colors.reset}`);
+                console.log(`  Uplift: ${colors.green}${edge.uplift.toFixed(3)}${colors.reset} (CI: ${edge.confidence.toFixed(2)})`);
+                console.log(`  Sample size: ${edge.sampleSize}`);
                 console.log('─'.repeat(80));
             });
         }
@@ -574,8 +543,8 @@ class AgentDBCLI {
             console.log(`  Description: ${skill.description}`);
             console.log(`  Success Rate: ${colors.green}${(skill.successRate * 100).toFixed(1)}%${colors.reset}`);
             console.log(`  Uses: ${skill.uses}`);
-            console.log(`  Avg Reward: ${(skill.avgReward ?? 0).toFixed(2)}`);
-            console.log(`  Avg Latency: ${(skill.avgLatencyMs ?? 0).toFixed(0)}ms`);
+            console.log(`  Avg Reward: ${skill.avgReward.toFixed(2)}`);
+            console.log(`  Avg Latency: ${skill.avgLatencyMs.toFixed(0)}ms`);
             console.log('─'.repeat(80));
         });
         log.success(`Found ${skills.length} matching skills`);
@@ -876,10 +845,12 @@ class AgentDBCLI {
             console.log('\n' + '-'.repeat(80));
             console.log(`${colors.bright}Push Progress${colors.reset}`);
             console.log('-'.repeat(80));
+            let pushedItems = 0;
             const startTime = Date.now();
             // Perform sync with progress callback
             const syncReport = await this.syncCoordinator.sync((progress) => {
                 if (progress.phase === 'pushing') {
+                    pushedItems = progress.current;
                     progressBar.update(progress.current, progress.total, progress.itemType || 'items');
                 }
                 else if (progress.phase === 'completed') {
@@ -918,7 +889,7 @@ class AgentDBCLI {
         }
     }
     // Helper to get detailed pending changes with actual data
-    getPendingChangesDetailed(incremental, _filter) {
+    getPendingChangesDetailed(incremental, filter) {
         if (!this.db) {
             return { episodes: [], skills: [], edges: [], totalItems: 0, totalSize: 0 };
         }
@@ -1289,7 +1260,7 @@ class AgentDBCLI {
         // Generate a random 32-character token
         return Array.from({ length: 32 }, () => Math.floor(Math.random() * 16).toString(16)).join('');
     }
-    getPendingChanges(_incremental, _filter) {
+    getPendingChanges(incremental, filter) {
         // Mock implementation - would query sync metadata table
         return {
             episodes: 10,
@@ -1418,9 +1389,6 @@ async function main() {
             else if (arg === '--db' && i + 1 < args.length) {
                 options.dbPath = args[++i];
             }
-            else if (arg === '--rvf-path' && i + 1 < args.length) {
-                options.rvfPath = args[++i];
-            }
             else if (!arg.startsWith('--')) {
                 options.dbPath = arg;
             }
@@ -1469,12 +1437,6 @@ async function main() {
             else if (arg === '--target' && i + 1 < args.length) {
                 options.targetDb = args[++i];
             }
-            else if (arg === '--to' && i + 1 < args.length) {
-                options.to = args[++i];
-            }
-            else if (arg === '--rvf-path' && i + 1 < args.length) {
-                options.rvfPath = args[++i];
-            }
             else if (arg === '--no-optimize') {
                 options.optimize = false;
             }
@@ -1490,7 +1452,7 @@ async function main() {
         }
         if (!options.sourceDb) {
             log.error('Source database path required');
-            console.log('Usage: agentdb migrate <source-db> [--to v2|v3|rvf] [--target <target-db>] [--rvf-path <path>] [--no-optimize] [--dry-run] [--verbose]');
+            console.log('Usage: agentdb migrate <source-db> [--target <target-db>] [--no-optimize] [--dry-run] [--verbose]');
             process.exit(1);
         }
         await migrateCommand(options);
@@ -1504,15 +1466,9 @@ async function main() {
             if (arg === '--db' && i + 1 < args.length) {
                 options.dbPath = args[++i];
             }
-            else if (arg === '--rvf-path' && i + 1 < args.length) {
-                options.rvfPath = args[++i];
-            }
             else if (arg === '--verbose' || arg === '-v') {
                 options.verbose = true;
             }
-            else if (arg === '--fix') {
-                options.fix = true;
-            }
             else if (!arg.startsWith('--')) {
                 options.dbPath = arg;
             }
@@ -1554,11 +1510,6 @@ async function main() {
         await handleCommanderCommand(hyperbolicCommand, args.slice(1));
         return;
     }
-    // Handle RVF store management commands
-    if (command === 'rvf') {
-        await handleCommanderCommand(rvfCommand, args.slice(1));
-        return;
-    }
     // Handle simulate command - run simulation CLI
     if (command === 'simulate') {
         // Use pathToFileURL for proper ESM module resolution
@@ -1687,10 +1638,114 @@ async function main() {
     }
 }
 // Command handlers
+// Init command handler
+async function handleInitCommand(args) {
+    // Parse arguments
+    let dbPath = './agentdb.db';
+    let dimension = 1536; // Default OpenAI ada-002
+    let preset = null;
+    let inMemory = false;
+    for (let i = 0; i < args.length; i++) {
+        const arg = args[i];
+        if (arg === '--dimension' && i + 1 < args.length) {
+            dimension = parseInt(args[++i]);
+        }
+        else if (arg === '--preset' && i + 1 < args.length) {
+            preset = args[++i];
+        }
+        else if (arg === '--in-memory') {
+            inMemory = true;
+            dbPath = ':memory:';
+        }
+        else if (!arg.startsWith('--')) {
+            dbPath = arg;
+        }
+    }
+    // Apply preset configurations
+    if (preset) {
+        if (preset === 'small') {
+            log.info('Using SMALL preset (<10K vectors)');
+        }
+        else if (preset === 'medium') {
+            log.info('Using MEDIUM preset (10K-100K vectors)');
+        }
+        else if (preset === 'large') {
+            log.info('Using LARGE preset (>100K vectors)');
+        }
+    }
+    log.info(`Initializing AgentDB at: ${dbPath}`);
+    log.info(`Embedding dimension: ${dimension}`);
+    if (inMemory) {
+        log.info('Using in-memory database (data will not persist)');
+    }
+    // Check if database already exists
+    if (!inMemory && fs.existsSync(dbPath)) {
+        log.warning(`Database already exists at ${dbPath}`);
+        log.info('Use a different path or remove the existing file to reinitialize');
+        return;
+    }
+    // Create parent directories if needed
+    if (!inMemory) {
+        const parentDir = path.dirname(dbPath);
+        if (parentDir !== '.' && !fs.existsSync(parentDir)) {
+            log.info(`Creating directory: ${parentDir}`);
+            fs.mkdirSync(parentDir, { recursive: true });
+        }
+    }
+    // Create new database with schemas
+    const cli = new AgentDBCLI();
+    await cli.initialize(dbPath);
+    // CRITICAL: Save the database to disk (unless in-memory)
+    // sql.js keeps everything in memory until explicitly saved
+    if (!inMemory) {
+        if (cli.db && typeof cli.db.save === 'function') {
+            cli.db.save();
+        }
+        else if (cli.db && typeof cli.db.close === 'function') {
+            // close() calls save() internally
+            cli.db.close();
+        }
+        // Verify database file was created
+        if (!fs.existsSync(dbPath)) {
+            log.error(`Failed to create database file at ${dbPath}`);
+            log.error('The database may be in memory only');
+            process.exit(1);
+        }
+    }
+    // Verify database has tables
+    try {
+        const db = await createDatabase(dbPath);
+        const tables = db.prepare("SELECT name FROM sqlite_master WHERE type='table'").all();
+        db.close();
+        if (tables.length === 0) {
+            log.warning('Database file created but no tables found');
+            log.warning('Schemas may not have been loaded correctly');
+        }
+        else {
+            log.success(`Database created with ${tables.length} tables`);
+        }
+    }
+    catch (error) {
+        log.warning(`Could not verify database tables: ${error.message}`);
+    }
+    log.success(`✅ AgentDB initialized successfully at ${dbPath}`);
+    log.info('Database includes:');
+    log.info('  - Core vector tables (episodes, embeddings)');
+    log.info('  - Causal memory graph');
+    log.info('  - Reflexion memory');
+    log.info('  - Skill library');
+    log.info('  - Learning system');
+    log.info('');
+    log.info('Next steps:');
+    log.info('  - Use "agentdb mcp start" to start MCP server');
+    log.info('  - Use "agentdb causal add" to add causal edges');
+    log.info('  - Use "agentdb reflexion add" to store episodes');
+    log.info('  - See "agentdb help" for all commands');
+}
 async function handleMcpCommand(args) {
     const subcommand = args[0];
     if (subcommand === 'start' || !subcommand) {
-        log.info('Starting AgentDB MCP Server...');
+        console.error('Starting AgentDB MCP Server...');
         // Spawn the MCP server as a child process (like agentic-flow does)
         // This ensures the server stays running with proper stdio inheritance
         const mcpServerPath = path.join(__dirname, '../mcp/agentdb-mcp-server.js');
@@ -1820,7 +1875,7 @@ async function handleReflexionCommands(cli, subcommand, args) {
     }
     else if (subcommand === 'retrieve') {
         // Parse retrieve command with new flags
-        const task = args[0];
+        let task = args[0];
         let k = undefined;
         let minReward = undefined;
         let onlyFailures = undefined;
@@ -1930,7 +1985,7 @@ async function handleSkillCommands(cli, subcommand, args) {
         printHelp();
     }
 }
-async function handleDbCommands(cli, subcommand, _args) {
+async function handleDbCommands(cli, subcommand, args) {
     if (subcommand === 'stats') {
         await cli.dbStats();
     }
@@ -2432,7 +2487,7 @@ async function handleVectorSearchCommand(args) {
         scored = scored.slice(0, k);
     }
     // Remove embedding from output
-    const output = scored.map(({ embedding: _embedding, ...rest }) => rest);
+    const output = scored.map(({ embedding, ...rest }) => rest);
     if (format === 'json') {
         console.log(JSON.stringify(output, null, 2));
     }
@@ -2598,9 +2653,8 @@ async function handleImportCommand(args) {
     const cli = new AgentDBCLI();
     await cli.initialize(dbPath);
     let imported = 0;
-    for (const rawItem of data) {
+    for (const item of data) {
         try {
-            const item = rawItem;
             // Import episode
             const episodeQuery = `
         INSERT INTO episodes (session_id, task, input, output, critique, reward, success, latency_ms, tokens_used, tags, metadata)
@@ -2687,14 +2741,15 @@ function printHelp() {
 ${colors.bright}${colors.cyan}█▀█ █▀▀ █▀▀ █▄░█ ▀█▀ █▀▄ █▄▄
 █▀█ █▄█ ██▄ █░▀█ ░█░ █▄▀ █▄█${colors.reset}
 
-${colors.bright}${colors.cyan}AgentDB v3 CLI - Intelligent Vector Database for AI Agents${colors.reset}
+${colors.bright}${colors.cyan}AgentDB v2 CLI - Vector Intelligence with Auto Backend Detection${colors.reset}
 
 ${colors.bright}CORE COMMANDS:${colors.reset}
   ${colors.cyan}init${colors.reset} [options]              Initialize database with backend detection
-    --backend <type>           Backend: auto (default), ruvector, rvf, hnswlib
+    --backend <type>           Backend: auto (default), ruvector, hnswlib
     --dimension <n>            Vector dimension (default: 384)
     --model <name>             Embedding model (default: Xenova/all-MiniLM-L6-v2)
-    --rvf-path <path>          RVF store path (default: ./agentdb.rvf)
+                               Popular: Xenova/bge-base-en-v1.5 (768d production)
+                                        Xenova/bge-small-en-v1.5 (384d best quality)
     --dry-run                  Show detection info without initializing
     --db <path>                Database path (default: ./agentdb.db)
 
@@ -2704,17 +2759,8 @@ ${colors.bright}CORE COMMANDS:${colors.reset}
 
   ${colors.cyan}doctor${colors.reset} [options]            System diagnostics and health check
     --db <path>                Database path to check (optional)
-    --rvf-path <path>          RVF store to check (default: ./agentdb.rvf)
-    --fix                      Auto-fix issues (compact RVF, repair DB)
     --verbose, -v              Show detailed system information
 
-  ${colors.cyan}rvf${colors.reset} <subcommand>            RVF store management
-    status <store>             Show RVF store status and statistics
-    compact <store>            Compact store to reclaim dead space
-    derive <parent> <child>    Create a COW branch
-    segments <store>           List store segments
-    detect                     Detect RVF SDK availability
-
 ${colors.bright}USAGE:${colors.reset}
   agentdb <command> <subcommand> [options]
 
@@ -2733,7 +2779,7 @@ ${colors.bright}SETUP COMMANDS:${colors.reset}
       --in-memory         Use temporary in-memory database (:memory:)
 
   agentdb install-embeddings [--global]
-    Install optional embedding dependencies (@xenova/transformers)
+    Install optional embedding dependencies (@huggingface/transformers)
     By default uses mock embeddings - run this for real ML-powered embeddings
     Options:
       --global, -g        Install globally instead of locally