agentdb 3.0.0-alpha.2 → 3.0.0-alpha.20

package/dist/src/core/AgentDB.js

@@ -5,19 +5,12 @@
  * - sql.js WASM for relational storage (with better-sqlite3 fallback)
  * - RuVector for optimized vector search (150x faster than SQLite)
  * - Unified integration passing vector backend to all controllers
- *
- * Unified single-file mode (vectorBackend='rvf', the default):
- *   One sql.js Database instance holds BOTH relational tables (episodes,
- *   skills, causal edges — 21+ tables) AND vector tables (rvf_vectors,
- *   rvf_meta). Everything persists to a single .rvf file.
  */
 import { ReflexionMemory } from '../controllers/ReflexionMemory.js';
 import { SkillLibrary } from '../controllers/SkillLibrary.js';
 import { CausalMemoryGraph } from '../controllers/CausalMemoryGraph.js';
 import { EmbeddingService } from '../controllers/EmbeddingService.js';
 import { createBackend } from '../backends/factory.js';
-import { SqlJsRvfBackend } from '../backends/rvf/SqlJsRvfBackend.js';
-import * as fs from 'fs';
 import * as path from 'path';
 import { fileURLToPath } from 'url';
 const __dirname = path.dirname(fileURLToPath(import.meta.url));
@@ -31,10 +24,6 @@ export class AgentDB {
     initialized = false;
     config;
     usingWasm = false;
-    /** True when vectors + relational share one sql.js database */
-    unifiedMode = false;
-    /** Reference to the rvf backend when in unified mode (for save/close) */
-    rvfBackendRef = null;
     constructor(config = {}) {
         this.config = config;
     }
@@ -43,70 +32,31 @@ export class AgentDB {
             return;
         const dbPath = this.config.dbPath || ':memory:';
         const vectorDimension = this.config.vectorDimension || 384;
-        const backendType = this.config.vectorBackend || 'rvf';
-        if (backendType === 'rvf') {
-            // ── Unified single-file mode ──
-            // One sql.js database for everything: vectors + relational tables
-            const rvfBackend = new SqlJsRvfBackend({
-                dimension: vectorDimension,
-                metric: 'cosine',
-                storagePath: dbPath,
-            });
-            await rvfBackend.initialize();
-            // Extract the raw sql.js database and wrap it with better-sqlite3 API
-            const rawDb = rvfBackend.getDatabase();
-            const { wrapExistingSqlJsDatabase } = await import('../db-fallback.js');
-            this.db = wrapExistingSqlJsDatabase(rawDb, dbPath);
-            this.vectorBackend = rvfBackend;
-            this.rvfBackendRef = rvfBackend;
-            this.unifiedMode = true;
-            this.usingWasm = true;
-            // Load relational schemas into the same database
-            await this.loadSchemas();
-        }
-        else {
-            // ── Legacy separate-database mode ──
-            this.db = await this.initializeDatabase(dbPath);
-            await this.loadSchemas();
-            this.vectorBackend = await createBackend(backendType, {
-                dimensions: vectorDimension,
-                metric: 'cosine',
-            });
-        }
+        // Initialize database with unified fallback system
+        this.db = await this.initializeDatabase(dbPath);
+        // Load schemas
+        await this.loadSchemas();
         // Initialize embedder with default Xenova model
         this.embedder = new EmbeddingService({
             model: 'Xenova/all-MiniLM-L6-v2',
             dimension: vectorDimension,
-            provider: 'transformers',
+            provider: 'transformers'
         });
         await this.embedder.initialize();
+        // Initialize vector backend (RuVector preferred, HNSWLib fallback)
+        this.vectorBackend = await createBackend(this.config.vectorBackend || 'auto', {
+            dimensions: vectorDimension,
+            metric: 'cosine'
+        });
         // Initialize controllers WITH vector backend for optimized search
+        // This enables 150x faster vector search via RuVector instead of SQLite brute-force
         this.reflexion = new ReflexionMemory(this.db, this.embedder, this.vectorBackend);
         this.skills = new SkillLibrary(this.db, this.embedder, this.vectorBackend);
-        this.causalGraph = new CausalMemoryGraph(this.db, undefined, // graphBackend
-        this.embedder, undefined, // config
+        this.causalGraph = new CausalMemoryGraph(this.db, undefined, // graphBackend - not used in default initialization
+        this.embedder, undefined, // config - use defaults
         this.vectorBackend);
         this.initialized = true;
-        const mode = this.unifiedMode ? 'unified .rvf' : (this.usingWasm ? 'sql.js WASM' : 'better-sqlite3');
-        console.log(`[AgentDB] Initialized with ${mode} + ${this.vectorBackend.name} vector backend`);
-    }
-    /**
-     * Save the database to disk.
-     * In unified mode, delegates to SqlJsRvfBackend.save() which exports the
-     * entire database (vectors + relational) to a single .rvf file.
-     * In legacy mode, saves the relational database via the wrapper's save().
-     */
-    async save(savePath) {
-        if (!this.initialized) {
-            throw new Error('AgentDB not initialized. Call initialize() first.');
-        }
-        if (this.unifiedMode && this.rvfBackendRef) {
-            const target = savePath || this.config.dbPath || ':memory:';
-            await this.rvfBackendRef.save(target);
-        }
-        else if (this.db && typeof this.db.save === 'function') {
-            this.db.save();
-        }
+        console.log(`[AgentDB] Initialized with ${this.usingWasm ? 'sql.js WASM' : 'better-sqlite3'} + ${this.vectorBackend.name} vector backend`);
     }
     /**
      * Initialize database with automatic fallback:
@@ -114,9 +64,11 @@ export class AgentDB {
      * 2. Fallback to sql.js WASM (no build tools required)
      */
     async initializeDatabase(dbPath) {
+        // Force WASM if requested
         if (this.config.forceWasm) {
             return this.initializeSqlJsWasm(dbPath);
         }
+        // Try better-sqlite3 first (native performance)
         try {
             const Database = (await import('better-sqlite3')).default;
             const db = new Database(dbPath);
@@ -124,7 +76,8 @@ export class AgentDB {
             this.usingWasm = false;
             return db;
         }
-        catch {
+        catch (error) {
+            // better-sqlite3 not available or failed, try sql.js WASM
             console.log('[AgentDB] better-sqlite3 not available, using sql.js WASM');
             return this.initializeSqlJsWasm(dbPath);
         }
@@ -139,19 +92,20 @@ export class AgentDB {
         return db;
     }
     /**
-     * Load database schemas
+     * Load database schemas.
+     *
+     * Uses inlined SQL constants (src/schemas/inline.ts, generated from the .sql
+     * files at build time) so this works in:
+     *   - the browser (no `fs` available) — fixes #2
+     *   - globally-installed CLIs where __dirname resolution misses dist/schemas
+     *     (the "Schema file not found" warning at install time) — fixes #1
      */
     async loadSchemas() {
-        const schemaPath = path.join(__dirname, '../../schemas/schema.sql');
-        if (fs.existsSync(schemaPath)) {
-            const schema = fs.readFileSync(schemaPath, 'utf-8');
-            this.db.exec(schema);
-        }
-        const frontierSchemaPath = path.join(__dirname, '../../schemas/frontier-schema.sql');
-        if (fs.existsSync(frontierSchemaPath)) {
-            const frontierSchema = fs.readFileSync(frontierSchemaPath, 'utf-8');
-            this.db.exec(frontierSchema);
-        }
+        const { SCHEMA_SQL, FRONTIER_SCHEMA_SQL } = await import('../schemas/inline.js');
+        if (SCHEMA_SQL)
+            this.db.exec(SCHEMA_SQL);
+        if (FRONTIER_SCHEMA_SQL)
+            this.db.exec(FRONTIER_SCHEMA_SQL);
     }
     getController(name) {
         if (!this.initialized) {
@@ -170,16 +124,8 @@ export class AgentDB {
                 throw new Error(`Unknown controller: ${name}`);
         }
     }
-    /**
-     * Close the database. In unified mode, auto-saves before closing.
-     */
     async close() {
-        if (this.unifiedMode && this.rvfBackendRef) {
-            // rvfBackendRef.close() flushes pending writes, auto-saves, and closes
-            this.rvfBackendRef.close();
-            this.rvfBackendRef = null;
-        }
-        else if (this.db) {
+        if (this.db) {
             this.db.close();
         }
     }
@@ -191,10 +137,6 @@ export class AgentDB {
     get isWasm() {
         return this.usingWasm;
     }
-    // Check if running in unified single-file mode
-    get isUnifiedMode() {
-        return this.unifiedMode;
-    }
     // Get vector backend info
     get vectorBackendName() {
         return this.vectorBackend?.name || 'none';

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+{"version":3,"file":"AgentDB.js","sourceRoot":"","sources":["../../../src/core/AgentDB.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AACH,OAAO,EAAE,eAAe,EAAE,MAAM,mCAAmC,CAAC;AACpE,OAAO,EAAE,YAAY,EAAE,MAAM,gCAAgC,CAAC;AAC9D,OAAO,EAAE,iBAAiB,EAAE,MAAM,qCAAqC,CAAC;AACxE,OAAO,EAAE,gBAAgB,EAAE,MAAM,oCAAoC,CAAC;AACtE,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAIvD,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAE,aAAa,EAAE,MAAM,KAAK,CAAC;AAEpC,MAAM,SAAS,GAAG,IAAI,CAAC,OAAO,CAAC,aAAa,CAAC,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;AAe/D,MAAM,OAAO,OAAO;IACV,EAAE,CAAuB;IACzB,SAAS,CAAmB;IAC5B,MAAM,CAAgB;IACtB,WAAW,CAAqB;IAChC,QAAQ,CAAoB;IAC7B,aAAa,CAAiB;IAC7B,WAAW,GAAG,KAAK,CAAC;IACpB,MAAM,CAAgB;IACtB,SAAS,GAAG,KAAK,CAAC;IAE1B,YAAY,SAAwB,EAAE;QACpC,IAAI,CAAC,MAAM,GAAG,MAAM,CAAC;IACvB,CAAC;IAED,KAAK,CAAC,UAAU;QACd,IAAI,IAAI,CAAC,WAAW;YAAE,OAAO;QAE7B,MAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,MAAM,IAAI,UAAU,CAAC;QAChD,MAAM,eAAe,GAAG,IAAI,CAAC,MAAM,CAAC,eAAe,IAAI,GAAG,CAAC;QAE3D,mDAAmD;QACnD,IAAI,CAAC,EAAE,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,CAAC;QAEhD,eAAe;QACf,MAAM,IAAI,CAAC,WAAW,EAAE,CAAC;QAEzB,gDAAgD;QAChD,IAAI,CAAC,QAAQ,GAAG,IAAI,gBAAgB,CAAC;YACnC,KAAK,EAAE,yBAAyB;YAChC,SAAS,EAAE,eAAe;YAC1B,QAAQ,EAAE,cAAc;SACzB,CAAC,CAAC;QACH,MAAM,IAAI,CAAC,QAAQ,CAAC,UAAU,EAAE,CAAC;QAEjC,mEAAmE;QACnE,IAAI,CAAC,aAAa,GAAG,MAAM,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,aAAa,IAAI,MAAM,EAAE;YAC5E,UAAU,EAAE,eAAe;YAC3B,MAAM,EAAE,QAAQ;SACjB,CAAC,CAAC;QAEH,kEAAkE;QAClE,oFAAoF;QACpF,IAAI,CAAC,SAAS,GAAG,IAAI,eAAe,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC;QACjF,IAAI,CAAC,MAAM,GAAG,IAAI,YAAY,CAAC,IAAI,CAAC,EAAE,EAAE,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,aAAa,CAAC,CAAC;QAC3E,IAAI,CAAC,WAAW,GAAG,IAAI,iBAAiB,CACtC,IAAI,CAAC,EAAE,EACP,SAAS,EAAE,oDAAoD;QAC/D,IAAI,CAAC,QAAQ,EACb,SAAS,EAAE,wBAAwB;QACnC,IAAI,CAAC,aAAa,CACnB,CAAC;QAEF,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;QAExB,OAAO,CAAC,GAAG,CAAC,8BAA8B,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,gBAAgB,MAAM,IAAI,CAAC,aAAa,CAAC,IAAI,iBAAiB,CAAC,CAAC;IAC7I,CAAC;IAED;;;;OAIG;IACK,KAAK,CAAC,kBAAkB,CAAC,MAAc;QAC7C,0BAA0B;QAC1B,IAAI,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,CAAC;YAC1B,OAAO,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC1C,CAAC;QAED,gDAAgD;QAChD,IAAI,CAAC;YACH,MAAM,QAAQ,GAAG,CAAC,MAAM,MAAM,CAAC,gBAAgB,CAAC,CAAC,CAAC,OAAO,CAAC;YAC1D,MAAM,EAAE,GAAG,IAAI,QAAQ,CAAC,MAAM,CAAC,CAAC;YAChC,EAAE,CAAC,MAAM,CAAC,oBAAoB,CAAC,CAAC;YAChC,IAAI,CAAC,SAAS,GAAG,KAAK,CAAC;YACvB,OAAO,EAAoC,CAAC;QAC9C,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,0DAA0D;YAC1D,OAAO,CAAC,GAAG,CAAC,2DAA2D,CAAC,CAAC;YACzE,OAAO,IAAI,CAAC,mBAAmB,CAAC,MAAM,CAAC,CAAC;QAC1C,CAAC;IACH,CAAC;IAED;;OAEG;IACK,KAAK,CAAC,mBAAmB,CAAC,MAAc;QAC9C,MAAM,EAAE,cAAc,EAAE,GAAG,MAAM,MAAM,CAAC,mBAAmB,CAAC,CAAC;QAC7D,MAAM,EAAE,GAAG,MAAM,cAAc,CAAC,MAAM,CAAC,CAAC;QACxC,IAAI,CAAC,SAAS,GAAG,IAAI,CAAC;QACtB,OAAO,EAAyB,CAAC;IACnC,CAAC;IAED;;;;;;;;OAQG;IACK,KAAK,CAAC,WAAW;QACvB,MAAM,EAAE,UAAU,EAAE,mBAAmB,EAAE,GAAG,MAAM,MAAM,CAAC,sBAAsB,CAAC,CAAC;QACjF,IAAI,UAAU;YAAE,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;QACzC,IAAI,mBAAmB;YAAE,IAAI,CAAC,EAAE,CAAC,IAAI,CAAC,mBAAmB,CAAC,CAAC;IAC7D,CAAC;IAED,aAAa,CAAC,IAAY;QACxB,IAAI,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC;YACtB,MAAM,IAAI,KAAK,CAAC,mDAAmD,CAAC,CAAC;QACvE,CAAC;QAED,QAAQ,IAAI,EAAE,CAAC;YACb,KAAK,QAAQ,CAAC;YACd,KAAK,WAAW;gBACd,OAAO,IAAI,CAAC,SAAS,CAAC;YACxB,KAAK,QAAQ;gBACX,OAAO,IAAI,CAAC,MAAM,CAAC;YACrB,KAAK,QAAQ,CAAC;YACd,KAAK,aAAa;gBAChB,OAAO,IAAI,CAAC,WAAW,CAAC;YAC1B;gBACE,MAAM,IAAI,KAAK,CAAC,uBAAuB,IAAI,EAAE,CAAC,CAAC;QACnD,CAAC;IACH,CAAC;IAED,KAAK,CAAC,KAAK;QACT,IAAI,IAAI,CAAC,EAAE,EAAE,CAAC;YACZ,IAAI,CAAC,EAAE,CAAC,KAAK,EAAE,CAAC;QAClB,CAAC;IACH,CAAC;IAED,qCAAqC;IACrC,IAAI,QAAQ;QACV,OAAO,IAAI,CAAC,EAAE,CAAC;IACjB,CAAC;IAED,8BAA8B;IAC9B,IAAI,MAAM;QACR,OAAO,IAAI,CAAC,SAAS,CAAC;IACxB,CAAC;IAED,0BAA0B;IAC1B,IAAI,iBAAiB;QACnB,OAAO,IAAI,CAAC,aAAa,EAAE,IAAI,IAAI,MAAM,CAAC;IAC5C,CAAC;CACF"}

package/dist/src/core/QueryCache.d.ts

@@ -61,7 +61,7 @@ export declare class QueryCache {
     /**
      * Generate cache key from SQL query and parameters
      */
-    generateKey(sql: string, params?: unknown[], category?: string): string;
+    generateKey(sql: string, params?: any[], category?: string): string;
     /**
      * Get value from cache
      */

package/dist/src/core/QueryCache.d.ts.map

@@ -1 +1 @@
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package/dist/src/core/QueryCache.js

@@ -42,7 +42,6 @@ export class QueryCache {
     /**
      * Get value from cache
      */
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any -- generic cache must accept any value type
     get(key) {
         if (!this.config.enabled) {
             return undefined;
@@ -69,7 +68,6 @@ export class QueryCache {
     /**
      * Set value in cache
      */
-    // eslint-disable-next-line @typescript-eslint/no-explicit-any -- generic cache must accept any value type
     set(key, value, ttl = this.config.defaultTTL) {
         if (!this.config.enabled) {
             return;
@@ -288,7 +286,7 @@ export class QueryCache {
                 return 8;
             case 'string':
                 return value.length * 2; // UTF-16
-            case 'object': {
+            case 'object':
                 if (Array.isArray(value)) {
                     return value.reduce((sum, item) => sum + this.estimateSize(item), 0);
                 }
@@ -302,9 +300,7 @@ export class QueryCache {
                     return value.length;
                 }
                 // For objects, estimate recursively
-                const obj = value;
-                return Object.entries(obj).reduce((sum, [key, val]) => sum + key.length * 2 + this.estimateSize(val), 0);
-            }
+                return Object.entries(value).reduce((sum, [key, val]) => sum + key.length * 2 + this.estimateSize(val), 0);
             default:
                 return 64; // Fallback estimate
         }

package/dist/src/core/QueryCache.js.map

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package/dist/src/db-fallback.d.ts

@@ -1,15 +1,52 @@
 /**
- * Database System using sql.js (WASM SQLite)
- * Pure JavaScript implementation with NO build dependencies
+ * Database System backed by SQLite.
+ *
+ * Resolution order (ruflo #2235 A):
+ *   1. **better-sqlite3** if the optional peer is loadable — native, faster,
+ *      what most callers actually want when they install the native module.
+ *   2. **sql.js** (WASM) — pure-JS fallback, requires no build tools.
+ *
+ * Both implementations expose the same `db.prepare(sql).run/get/all(...)`
+ * interface (the sql.js wrapper below was designed to mimic better-sqlite3),
+ * so callers don't care which one served them.
  *
  * SECURITY: Fixed SQL injection vulnerabilities:
  * - PRAGMA commands validated against whitelist
  * - Removed eval() usage (replaced with async import)
  */
+export interface FileFingerprint {
+    exists: boolean;
+    device?: number;
+    inode?: number;
+    mode?: number;
+    size?: number;
+    mtimeMs?: number;
+    ctimeMs?: number;
+    sha256?: string;
+}
+export interface DatabaseFileState {
+    database: FileFingerprint;
+    wal: FileFingerprint;
+    shm: FileFingerprint;
+    journal: FileFingerprint;
+}
+export declare class SqlJsConcurrentModificationError extends Error {
+    readonly code = "AGENTDB_SQLJS_CONCURRENT_MODIFICATION";
+    constructor(filename: string);
+}
+export declare function captureDatabaseFileState(filename: string): DatabaseFileState;
+export declare function loadSqlJsDatabaseFile(filename: string): {
+    data: Uint8Array | null;
+    state: DatabaseFileState;
+};
+export declare function persistSqlJsDatabase(filename: string, data: Uint8Array, expectedState: DatabaseFileState): DatabaseFileState;
 /**
- * Get sql.js database implementation (ONLY sql.js, no better-sqlite3)
+ * Get the SQLite database implementation. Prefers native `better-sqlite3`
+ * when loadable; falls back to WASM `sql.js` (no build tools required).
  */
 export declare function getDatabaseImplementation(): Promise<any>;
+/** Reset the cached implementation (intended for tests). */
+export declare function _resetDatabaseImplementationForTests(): void;
 /**
  * Create a database instance using sql.js
  */

package/dist/src/db-fallback.d.ts.map

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