@zbigniewsobiecki/squint 1.0.0

package/dist/db/repositories/module-repository.js

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+import { ensureModulesTables } from '../schema-manager.js';
+import { buildSingleRootTree } from '../utils/tree-builder.js';
+import { queryCallGraphEdges } from './_shared/call-graph-query.js';
+const MODULE_COLS = `
+  id,
+  parent_id as parentId,
+  slug,
+  full_path as fullPath,
+  name,
+  description,
+  depth,
+  color_index as colorIndex,
+  is_test as isTest,
+  created_at as createdAt`;
+const MODULE_COLS_M = `
+  m.id,
+  m.parent_id as parentId,
+  m.slug,
+  m.full_path as fullPath,
+  m.name,
+  m.description,
+  m.depth,
+  m.color_index as colorIndex,
+  m.is_test as isTest,
+  m.created_at as createdAt`;
+function toModule(row) {
+    return { ...row, isTest: row.isTest === 1 };
+}
+function toModuleWithMembers(m, getMemberInfo) {
+    const members = getMemberInfo(m.id);
+    return { ...m, members };
+}
+/**
+ * Repository for module tree operations.
+ */
+export class ModuleRepository {
+    db;
+    constructor(db) {
+        this.db = db;
+    }
+    /**
+     * Ensure the root "project" module exists and return its ID.
+     */
+    ensureRoot() {
+        ensureModulesTables(this.db);
+        const existing = this.db
+            .prepare(`
+      SELECT id FROM modules WHERE full_path = 'project'
+    `)
+            .get();
+        if (existing)
+            return existing.id;
+        const stmt = this.db.prepare(`
+      INSERT INTO modules (parent_id, slug, full_path, name, description, depth)
+      VALUES (NULL, 'project', 'project', 'Project', 'Root module for the project', 0)
+    `);
+        const result = stmt.run();
+        return result.lastInsertRowid;
+    }
+    /**
+     * Insert a new module in the tree.
+     */
+    insert(parentId, slug, name, description, isTest) {
+        ensureModulesTables(this.db);
+        // Calculate full_path and depth
+        let fullPath;
+        let depth;
+        let effectiveIsTest = isTest;
+        if (parentId === null) {
+            fullPath = slug;
+            depth = 0;
+        }
+        else {
+            const parent = this.db
+                .prepare(`
+        SELECT full_path, depth, is_test FROM modules WHERE id = ?
+      `)
+                .get(parentId);
+            if (!parent) {
+                throw new Error(`Parent module ${parentId} not found`);
+            }
+            fullPath = `${parent.full_path}.${slug}`;
+            depth = parent.depth + 1;
+            // Inherit test status from parent if parent is test
+            if (parent.is_test === 1) {
+                effectiveIsTest = true;
+            }
+        }
+        const stmt = this.db.prepare(`
+      INSERT INTO modules (parent_id, slug, full_path, name, description, depth, is_test)
+      VALUES (?, ?, ?, ?, ?, ?, ?)
+    `);
+        const result = stmt.run(parentId, slug, fullPath, name, description ?? null, depth, effectiveIsTest ? 1 : 0);
+        return result.lastInsertRowid;
+    }
+    /**
+     * Get a module by its full path.
+     */
+    getByPath(fullPath) {
+        ensureModulesTables(this.db);
+        const row = this.db
+            .prepare(`SELECT ${MODULE_COLS} FROM modules WHERE full_path = ?`)
+            .get(fullPath);
+        if (!row)
+            return null;
+        return toModule(row);
+    }
+    /**
+     * Get a module by ID.
+     */
+    getById(id) {
+        ensureModulesTables(this.db);
+        const row = this.db.prepare(`SELECT ${MODULE_COLS} FROM modules WHERE id = ?`).get(id);
+        if (!row)
+            return null;
+        return toModule(row);
+    }
+    /**
+     * Get direct children of a module.
+     */
+    getChildren(moduleId) {
+        ensureModulesTables(this.db);
+        const rows = this.db
+            .prepare(`SELECT ${MODULE_COLS} FROM modules WHERE parent_id = ? ORDER BY slug`)
+            .all(moduleId);
+        return rows.map(toModule);
+    }
+    /**
+     * Get all modules as a flat list.
+     */
+    getAll() {
+        ensureModulesTables(this.db);
+        const rows = this.db.prepare(`SELECT ${MODULE_COLS} FROM modules ORDER BY depth, full_path`).all();
+        return rows.map(toModule);
+    }
+    /**
+     * Get the module tree as a recursive structure.
+     */
+    getTree() {
+        ensureModulesTables(this.db);
+        const modules = this.getAll();
+        if (modules.length === 0)
+            return null;
+        return buildSingleRootTree(modules, (m) => ({ ...m, children: [] }));
+    }
+    /**
+     * Delete all modules and their memberships.
+     */
+    clear() {
+        ensureModulesTables(this.db);
+        this.db.exec('DELETE FROM modules');
+    }
+    /**
+     * Assign a symbol (definition) to a module.
+     */
+    assignSymbol(definitionId, moduleId) {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare(`
+      INSERT OR REPLACE INTO module_members (module_id, definition_id)
+      VALUES (?, ?)
+    `);
+        stmt.run(moduleId, definitionId);
+    }
+    /**
+     * Get all symbols not yet assigned to any module.
+     */
+    getUnassigned() {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare(`
+      SELECT
+        d.id,
+        d.name,
+        d.kind,
+        f.path as filePath,
+        d.line,
+        d.end_line as endLine,
+        d.is_exported as isExported,
+        MAX(CASE WHEN dm.key = 'purpose' THEN dm.value END) as purpose,
+        MAX(CASE WHEN dm.key = 'domain' THEN dm.value END) as domain,
+        MAX(CASE WHEN dm.key = 'role' THEN dm.value END) as role
+      FROM definitions d
+      JOIN files f ON d.file_id = f.id
+      LEFT JOIN definition_metadata dm ON dm.definition_id = d.id
+      WHERE d.id NOT IN (SELECT definition_id FROM module_members)
+      GROUP BY d.id
+      ORDER BY f.path, d.line
+    `);
+        const rows = stmt.all();
+        return rows.map((row) => ({
+            id: row.id,
+            name: row.name,
+            kind: row.kind,
+            filePath: row.filePath,
+            line: row.line,
+            endLine: row.endLine,
+            isExported: row.isExported === 1,
+            purpose: row.purpose,
+            domain: row.domain ? JSON.parse(row.domain) : null,
+            role: row.role,
+        }));
+    }
+    /**
+     * Get symbols assigned to a specific module.
+     */
+    getSymbols(moduleId) {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare(`
+      SELECT
+        d.id,
+        d.name,
+        d.kind,
+        f.path as filePath,
+        d.line,
+        d.is_exported as isExported
+      FROM module_members mm
+      JOIN definitions d ON mm.definition_id = d.id
+      JOIN files f ON d.file_id = f.id
+      WHERE mm.module_id = ?
+      ORDER BY f.path, d.line
+    `);
+        const rows = stmt.all(moduleId);
+        return rows.map((row) => ({ ...row, isExported: row.isExported === 1 }));
+    }
+    /**
+     * Get a module with all its members.
+     */
+    getWithMembers(moduleId) {
+        ensureModulesTables(this.db);
+        const module = this.getById(moduleId);
+        if (!module)
+            return null;
+        const members = this.getSymbols(moduleId);
+        return {
+            ...module,
+            members: members.map((m) => ({ ...m, definitionId: m.id })),
+        };
+    }
+    /**
+     * Get all modules with their members.
+     */
+    getAllWithMembers() {
+        ensureModulesTables(this.db);
+        const modules = this.getAll();
+        return modules.map((m) => {
+            const members = this.getSymbols(m.id);
+            return {
+                ...m,
+                members: members.map((mem) => ({ ...mem, definitionId: mem.id })),
+            };
+        });
+    }
+    /**
+     * Get module statistics.
+     */
+    getStats() {
+        ensureModulesTables(this.db);
+        const moduleCount = this.db.prepare('SELECT COUNT(*) as count FROM modules').get().count;
+        const assigned = this.db.prepare('SELECT COUNT(*) as count FROM module_members').get().count;
+        const totalDefs = this.db.prepare('SELECT COUNT(*) as count FROM definitions').get().count;
+        return {
+            moduleCount,
+            assigned,
+            unassigned: totalDefs - assigned,
+        };
+    }
+    /**
+     * Get count of modules.
+     */
+    getCount() {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare('SELECT COUNT(*) as count FROM modules');
+        const row = stmt.get();
+        return row.count;
+    }
+    /**
+     * Get module membership for a definition.
+     */
+    getDefinitionModule(definitionId) {
+        ensureModulesTables(this.db);
+        const row = this.db
+            .prepare(`SELECT ${MODULE_COLS_M} FROM module_members mm JOIN modules m ON mm.module_id = m.id WHERE mm.definition_id = ?`)
+            .get(definitionId);
+        if (!row)
+            return null;
+        return { module: toModule(row) };
+    }
+    /**
+     * Get the symbol-level call graph.
+     * This is needed by getModuleCallGraph and getIncomingEdgesFor.
+     */
+    getCallGraph() {
+        return queryCallGraphEdges(this.db);
+    }
+    /**
+     * Get modules that exceed a member threshold.
+     * Returns modules with member_count > threshold, including their member details.
+     */
+    getModulesExceedingThreshold(threshold) {
+        ensureModulesTables(this.db);
+        const rawModules = this.db
+            .prepare(`
+      SELECT ${MODULE_COLS_M}, COUNT(mm.definition_id) as memberCount
+      FROM modules m
+      JOIN module_members mm ON mm.module_id = m.id
+      GROUP BY m.id
+      HAVING COUNT(mm.definition_id) > ?
+      ORDER BY m.depth, m.full_path
+    `)
+            .all(threshold);
+        return rawModules.map((m) => toModuleWithMembers(toModule(m), (id) => this.getMemberInfo(id)));
+    }
+    /**
+     * Get detailed member info for a module (used by deepen phase).
+     */
+    getMemberInfo(moduleId) {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare(`
+      SELECT
+        mm.definition_id as definitionId,
+        d.name,
+        d.kind,
+        f.path as filePath,
+        d.line,
+        d.is_exported as isExported
+      FROM module_members mm
+      JOIN definitions d ON mm.definition_id = d.id
+      JOIN files f ON d.file_id = f.id
+      WHERE mm.module_id = ?
+      ORDER BY f.path, d.line
+    `);
+        const rows = stmt.all(moduleId);
+        return rows.map((row) => ({ ...row, isExported: row.isExported === 1 }));
+    }
+    /**
+     * Assign color indices based on branch identity.
+     * Each depth-1 module gets a sequential index; descendants inherit their ancestor's index.
+     */
+    assignColorIndices() {
+        ensureModulesTables(this.db);
+        const depth1Modules = this.db
+            .prepare('SELECT id, full_path FROM modules WHERE depth = 1 ORDER BY id')
+            .all();
+        const updateStmt = this.db.prepare('UPDATE modules SET color_index = ? WHERE id = ? OR (full_path LIKE ? AND depth > 1)');
+        const transaction = this.db.transaction(() => {
+            for (let i = 0; i < depth1Modules.length; i++) {
+                const mod = depth1Modules[i];
+                updateStmt.run(i, mod.id, `${mod.full_path}.%`);
+            }
+        });
+        transaction();
+    }
+    /**
+     * Get IDs of all test modules (is_test = 1).
+     */
+    getTestModuleIds() {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare('SELECT id FROM modules WHERE is_test = 1');
+        const rows = stmt.all();
+        return new Set(rows.map((r) => r.id));
+    }
+    /**
+     * Prune empty leaf modules iteratively.
+     * A leaf is a module with no children and no members.
+     * Deleting a leaf may turn its parent into a new empty leaf, so we loop.
+     */
+    pruneEmptyLeaves() {
+        let totalPruned = 0;
+        // foreign_keys pragma is OFF, so no CASCADE — but empty leaves
+        // have no members and no children by definition, so plain DELETE works.
+        const stmt = this.db.prepare(`
+      DELETE FROM modules WHERE full_path != 'project'
+        AND id NOT IN (SELECT DISTINCT parent_id FROM modules WHERE parent_id IS NOT NULL)
+        AND id NOT IN (SELECT DISTINCT module_id FROM module_members)
+    `);
+        while (true) {
+            const result = stmt.run();
+            if (result.changes === 0)
+                break;
+            totalPruned += result.changes;
+        }
+        return totalPruned;
+    }
+    /**
+     * Update a module's name and/or description.
+     */
+    update(id, updates) {
+        ensureModulesTables(this.db);
+        const sets = [];
+        const params = [];
+        if (updates.name !== undefined) {
+            sets.push('name = ?');
+            params.push(updates.name);
+        }
+        if (updates.description !== undefined) {
+            sets.push('description = ?');
+            params.push(updates.description);
+        }
+        if (sets.length === 0)
+            return false;
+        params.push(String(id));
+        const stmt = this.db.prepare(`UPDATE modules SET ${sets.join(', ')} WHERE id = ?`);
+        const result = stmt.run(...params);
+        return result.changes > 0;
+    }
+    /**
+     * Delete a module.
+     * Throws an error if the module has members unless the caller handles that externally.
+     */
+    delete(id) {
+        ensureModulesTables(this.db);
+        // Check for members
+        const memberCount = this.db.prepare('SELECT COUNT(*) as count FROM module_members WHERE module_id = ?').get(id).count;
+        if (memberCount > 0) {
+            throw new Error(`Module ${id} has ${memberCount} member(s). Remove members first or use --force.`);
+        }
+        const stmt = this.db.prepare('DELETE FROM modules WHERE id = ?');
+        const result = stmt.run(id);
+        return result.changes > 0;
+    }
+    /**
+     * Remove a symbol from its module assignment.
+     */
+    unassignSymbol(definitionId) {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare('DELETE FROM module_members WHERE definition_id = ?');
+        const result = stmt.run(definitionId);
+        return result.changes > 0;
+    }
+    /**
+     * Get leaf modules exceeding a member threshold.
+     * Leaf = not a parent of any other module. Ordered by member count DESC (largest first).
+     */
+    getLeafModulesExceedingThreshold(threshold) {
+        ensureModulesTables(this.db);
+        const rawModules = this.db
+            .prepare(`
+      SELECT ${MODULE_COLS_M}, COUNT(mm.definition_id) as memberCount
+      FROM modules m
+      JOIN module_members mm ON mm.module_id = m.id
+      WHERE m.id NOT IN (SELECT DISTINCT parent_id FROM modules WHERE parent_id IS NOT NULL)
+      GROUP BY m.id
+      HAVING COUNT(mm.definition_id) > ?
+      ORDER BY COUNT(mm.definition_id) DESC
+    `)
+            .all(threshold);
+        return rawModules.map((m) => toModuleWithMembers(toModule(m), (id) => this.getMemberInfo(id)));
+    }
+    /**
+     * Get branch modules (has children) with direct members exceeding a threshold.
+     * These need rebalancing, not splitting.
+     */
+    getBranchModulesWithDirectMembers(threshold) {
+        ensureModulesTables(this.db);
+        const rawModules = this.db
+            .prepare(`
+      SELECT ${MODULE_COLS_M}, COUNT(mm.definition_id) as memberCount
+      FROM modules m
+      JOIN module_members mm ON mm.module_id = m.id
+      WHERE m.id IN (SELECT DISTINCT parent_id FROM modules WHERE parent_id IS NOT NULL)
+      GROUP BY m.id
+      HAVING COUNT(mm.definition_id) > ?
+      ORDER BY COUNT(mm.definition_id) DESC
+    `)
+            .all(threshold);
+        return rawModules.map((m) => toModuleWithMembers(toModule(m), (id) => this.getMemberInfo(id)));
+    }
+    /**
+     * Get all callers of a definition with their module assignments.
+     */
+    getIncomingEdgesFor(definitionId) {
+        ensureModulesTables(this.db);
+        const stmt = this.db.prepare(`
+      SELECT
+        caller.id as callerId,
+        caller.name as callerName,
+        mm.module_id as callerModuleId,
+        COUNT(*) as weight
+      FROM definitions caller
+      JOIN files f ON caller.file_id = f.id
+      JOIN symbols s ON s.file_id = f.id AND s.definition_id = ?
+      JOIN usages u ON u.symbol_id = s.id
+      LEFT JOIN module_members mm ON mm.definition_id = caller.id
+      WHERE u.context IN ('call_expression', 'new_expression')
+        AND caller.line <= u.line AND u.line <= caller.end_line
+        AND caller.id != ?
+      GROUP BY caller.id, mm.module_id
+      UNION ALL
+      SELECT
+        caller.id as callerId,
+        caller.name as callerName,
+        mm.module_id as callerModuleId,
+        COUNT(*) as weight
+      FROM definitions caller
+      JOIN files f ON caller.file_id = f.id
+      JOIN imports i ON i.from_file_id = f.id
+      JOIN symbols s ON s.reference_id = i.id AND s.definition_id = ?
+      JOIN usages u ON u.symbol_id = s.id
+      LEFT JOIN module_members mm ON mm.definition_id = caller.id
+      WHERE u.context IN ('call_expression', 'new_expression')
+        AND caller.line <= u.line AND u.line <= caller.end_line
+        AND caller.id != ?
+      GROUP BY caller.id, mm.module_id
+    `);
+        const rows = stmt.all(definitionId, definitionId, definitionId, definitionId);
+        // Aggregate duplicate callers (from the UNION)
+        const callerMap = new Map();
+        for (const row of rows) {
+            const existing = callerMap.get(row.callerId);
+            if (existing) {
+                existing.weight += row.weight;
+            }
+            else {
+                callerMap.set(row.callerId, { ...row });
+            }
+        }
+        return Array.from(callerMap.values());
+    }
+}
+//# sourceMappingURL=module-repository.js.map

package/dist/db/repositories/module-repository.js.map

@@ -0,0 +1 @@
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package/dist/db/repositories/relationship-repository.d.ts

@@ -0,0 +1,98 @@
+import type Database from 'better-sqlite3';
+import type { EnhancedRelationshipContext, RelationshipAnnotation, RelationshipType, RelationshipWithDetails } from '../schema.js';
+export interface UnannotatedInheritance {
+    id: number;
+    fromId: number;
+    fromName: string;
+    fromKind: string;
+    fromFilePath: string;
+    toId: number;
+    toName: string;
+    toKind: string;
+    toFilePath: string;
+    relationshipType: 'extends' | 'implements';
+}
+export interface UnannotatedRelationship {
+    fromDefinitionId: number;
+    fromName: string;
+    fromKind: string;
+    fromFilePath: string;
+    fromLine: number;
+    toDefinitionId: number;
+    toName: string;
+    toKind: string;
+    toFilePath: string;
+    toLine: number;
+}
+/**
+ * Repository for relationship annotation operations.
+ * Handles CRUD operations for the relationship_annotations table.
+ */
+export declare class RelationshipRepository {
+    private db;
+    constructor(db: Database.Database);
+    /**
+     * Set (insert or update) a semantic annotation for a relationship between two definitions.
+     */
+    set(fromDefinitionId: number, toDefinitionId: number, semantic: string, relationshipType?: RelationshipType): void;
+    /**
+     * Get a relationship annotation between two definitions.
+     */
+    get(fromDefinitionId: number, toDefinitionId: number): RelationshipAnnotation | null;
+    /**
+     * Update only the relationship type for an existing annotation.
+     */
+    updateType(fromDefinitionId: number, toDefinitionId: number, relationshipType: RelationshipType): boolean;
+    /**
+     * Remove a relationship annotation.
+     */
+    remove(fromDefinitionId: number, toDefinitionId: number): boolean;
+    /**
+     * Get all relationship annotations from a specific definition.
+     */
+    getFrom(fromDefinitionId: number): RelationshipWithDetails[];
+    /**
+     * Get all relationship annotations to a specific definition.
+     */
+    getTo(toDefinitionId: number): RelationshipWithDetails[];
+    /**
+     * Get all relationship annotations.
+     */
+    getAll(options?: {
+        limit?: number;
+    }): RelationshipWithDetails[];
+    /**
+     * Get count of relationship annotations.
+     */
+    getCount(): number;
+    /**
+     * Get unannotated inheritance relationships (extends/implements with placeholder semantic).
+     */
+    getUnannotatedInheritance(limit?: number): UnannotatedInheritance[];
+    /**
+     * Get count of unannotated inheritance relationships.
+     */
+    getUnannotatedInheritanceCount(): number;
+    /**
+     * Get definitions that have calls to other definitions but no annotation.
+     */
+    getUnannotated(options?: {
+        limit?: number;
+        fromDefinitionId?: number;
+    }): UnannotatedRelationship[];
+    /**
+     * Get count of unannotated relationships.
+     */
+    getUnannotatedCount(fromDefinitionId?: number): number;
+    /**
+     * Get the next relationship(s) that need annotation with rich context.
+     */
+    getNextToAnnotate(options: {
+        limit?: number;
+        fromDefinitionId?: number;
+    } | undefined, getDefinitionMetadata: (id: number) => Record<string, string>, getDefinitionDependencies: (id: number) => Array<{
+        dependencyId: number;
+        name: string;
+    }>): EnhancedRelationshipContext[];
+}
+//# sourceMappingURL=relationship-repository.d.ts.map

package/dist/db/repositories/relationship-repository.d.ts.map

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