@zbigniewsobiecki/squint 1.0.0

package/dist/db/database-facade.js

@@ -0,0 +1,347 @@
+import fs from 'node:fs';
+import path from 'node:path';
+import Database from 'better-sqlite3';
+import { SCHEMA } from './schema.js';
+import { CallGraphService } from './repositories/call-graph-service.js';
+import { DefinitionRepository } from './repositories/definition-repository.js';
+import { DependencyRepository } from './repositories/dependency-repository.js';
+import { DomainRepository } from './repositories/domain-repository.js';
+import { FeatureRepository } from './repositories/feature-repository.js';
+import { FileRepository } from './repositories/file-repository.js';
+import { FlowRepository } from './repositories/flow-repository.js';
+import { GraphRepository } from './repositories/graph-repository.js';
+import { InteractionAnalysis } from './repositories/interaction-analysis.js';
+import { InteractionRepository } from './repositories/interaction-repository.js';
+import { MetadataRepository } from './repositories/metadata-repository.js';
+import { ModuleRepository } from './repositories/module-repository.js';
+import { RelationshipRepository } from './repositories/relationship-repository.js';
+/**
+ * Database access layer that owns the connection and exposes repositories.
+ * Implements IIndexWriter for the parse/indexing pipeline.
+ */
+export class IndexDatabase {
+    conn;
+    _sourceDirectory = null;
+    // Repositories
+    files;
+    definitions;
+    metadata;
+    dependencies;
+    relationships;
+    domains;
+    modules;
+    interactions;
+    features;
+    flows;
+    graph;
+    callGraph;
+    interactionAnalysis;
+    constructor(dbPath) {
+        this.conn = new Database(dbPath);
+        this.conn.pragma('journal_mode = WAL');
+        // Initialize all repositories
+        this.files = new FileRepository(this.conn);
+        this.definitions = new DefinitionRepository(this.conn);
+        this.metadata = new MetadataRepository(this.conn);
+        this.dependencies = new DependencyRepository(this.conn);
+        this.relationships = new RelationshipRepository(this.conn);
+        this.domains = new DomainRepository(this.conn);
+        this.modules = new ModuleRepository(this.conn);
+        this.interactions = new InteractionRepository(this.conn);
+        this.features = new FeatureRepository(this.conn);
+        this.flows = new FlowRepository(this.conn);
+        this.graph = new GraphRepository(this.conn);
+        this.callGraph = new CallGraphService(this.conn);
+        this.interactionAnalysis = new InteractionAnalysis(this.conn);
+    }
+    // ============================================================
+    // Schema & Lifecycle
+    // ============================================================
+    initialize() {
+        this.conn.exec(`
+      DROP TABLE IF EXISTS flows;
+      DROP TABLE IF EXISTS module_members;
+      DROP TABLE IF EXISTS modules;
+      DROP TABLE IF EXISTS domains;
+      DROP TABLE IF EXISTS relationship_annotations;
+      DROP TABLE IF EXISTS definition_metadata;
+      DROP TABLE IF EXISTS usages;
+      DROP TABLE IF EXISTS symbols;
+      DROP TABLE IF EXISTS imports;
+      DROP TABLE IF EXISTS definitions;
+      DROP TABLE IF EXISTS files;
+      DROP TABLE IF EXISTS metadata;
+    `);
+        this.conn.exec(SCHEMA);
+    }
+    close() {
+        this.conn.close();
+    }
+    // ============================================================
+    // Path Helpers
+    // ============================================================
+    getSourceDirectory() {
+        if (!this._sourceDirectory) {
+            try {
+                const row = this.conn.prepare('SELECT value FROM metadata WHERE key = ?').get('source_directory');
+                this._sourceDirectory = row?.value ?? process.cwd();
+            }
+            catch {
+                this._sourceDirectory = process.cwd();
+            }
+        }
+        return this._sourceDirectory;
+    }
+    resolveFilePath(dbPath) {
+        if (path.isAbsolute(dbPath))
+            return dbPath; // backward compat for old DBs
+        return path.resolve(this.getSourceDirectory(), dbPath);
+    }
+    toRelativePath(absolutePath) {
+        return path.relative(this.getSourceDirectory(), absolutePath);
+    }
+    // ============================================================
+    // IIndexWriter Implementation
+    // ============================================================
+    setMetadata(key, value) {
+        const stmt = this.conn.prepare(`
+      INSERT OR REPLACE INTO metadata (key, value) VALUES (?, ?)
+    `);
+        stmt.run(key, value);
+    }
+    insertFile(file) {
+        return this.files.insert(file);
+    }
+    insertDefinition(fileId, def) {
+        return this.files.insertDefinition(fileId, def);
+    }
+    insertReference(fromFileId, toFileId, ref) {
+        return this.files.insertReference(fromFileId, toFileId, ref);
+    }
+    insertSymbol(refId, defId, sym, fileId) {
+        return this.files.insertSymbol(refId, defId, sym, fileId);
+    }
+    insertUsage(symbolId, usage) {
+        this.files.insertUsage(symbolId, usage);
+    }
+    getDefinitionByName(fileId, name) {
+        return this.definitions.getByName(fileId, name);
+    }
+    getDefinitionCount() {
+        return this.definitions.getCount();
+    }
+    getReferenceCount() {
+        return this.files.getReferenceCount();
+    }
+    getUsageCount() {
+        return this.files.getUsageCount();
+    }
+    getCallsites(definitionId) {
+        return this.dependencies.getCallsites(definitionId);
+    }
+    getCallsitesForFile(fileId) {
+        return this.dependencies.getCallsitesForFile(fileId);
+    }
+    getCallsiteCount() {
+        return this.dependencies.getCallsiteCount();
+    }
+    // ============================================================
+    // Composite Methods
+    // ============================================================
+    /**
+     * Get overall database stats (cross-repo aggregation)
+     */
+    getStats() {
+        const files = this.files.getCount();
+        const definitions = this.definitions.getCount();
+        const imports = this.files.getReferenceCount();
+        const usages = this.files.getUsageCount();
+        const callsites = this.dependencies.getCallsiteCount();
+        const moduleStats = this.modules.getStats();
+        const flowStats = this.flows.getStats();
+        const relationships = this.relationships.getCount();
+        const interactionCount = this.interactions.getCount();
+        return {
+            files,
+            definitions,
+            imports,
+            usages,
+            callsites,
+            modules: moduleStats.moduleCount,
+            assignedSymbols: moduleStats.assigned,
+            unassignedSymbols: moduleStats.unassigned,
+            flows: flowStats.flowCount,
+            interactions: interactionCount,
+            relationships,
+        };
+    }
+    /**
+     * Get exported definitions that are not called by anything (entry points)
+     */
+    getRootDefinitions() {
+        const callGraph = this.modules.getCallGraph();
+        const calledIds = new Set();
+        for (const edge of callGraph) {
+            calledIds.add(edge.toId);
+        }
+        const allDefs = this.conn
+            .prepare(`
+      SELECT
+        d.id,
+        d.name,
+        d.kind,
+        f.path as filePath,
+        d.line
+      FROM definitions d
+      JOIN files f ON d.file_id = f.id
+      WHERE d.is_exported = 1
+      ORDER BY f.path, d.line
+    `)
+            .all();
+        return allDefs.filter((def) => !calledIds.has(def.id));
+    }
+    /**
+     * Find ghost rows: rows referencing entities that no longer exist.
+     * Each query is wrapped in try/catch since tables may not exist.
+     */
+    findGhostRows() {
+        const result = {
+            ghostRelationships: [],
+            ghostMembers: [],
+            ghostEntryPoints: [],
+            ghostEntryModules: [],
+            ghostInteractions: [],
+            ghostSubflows: [],
+        };
+        // ghost-relationship: relationship_annotations where definition_id NOT IN definitions
+        try {
+            const rows = this.conn
+                .prepare(`SELECT ra.id FROM relationship_annotations ra
+           LEFT JOIN definitions d1 ON ra.from_definition_id = d1.id
+           LEFT JOIN definitions d2 ON ra.to_definition_id = d2.id
+           WHERE d1.id IS NULL OR d2.id IS NULL`)
+                .all();
+            result.ghostRelationships = rows.map((r) => ({ id: r.id, table: 'relationship_annotations' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        // ghost-member: module_members where definition_id NOT IN definitions OR module_id NOT IN modules
+        try {
+            const rows = this.conn
+                .prepare(`SELECT mm.definition_id as definitionId FROM module_members mm
+           LEFT JOIN definitions d ON mm.definition_id = d.id
+           LEFT JOIN modules m ON mm.module_id = m.id
+           WHERE d.id IS NULL OR m.id IS NULL`)
+                .all();
+            result.ghostMembers = rows.map((r) => ({ definitionId: r.definitionId, table: 'module_members' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        // ghost-entry-point: flows where entry_point_id IS NOT NULL AND NOT IN definitions
+        try {
+            const rows = this.conn
+                .prepare(`SELECT f.id FROM flows f
+           LEFT JOIN definitions d ON f.entry_point_id = d.id
+           WHERE f.entry_point_id IS NOT NULL AND d.id IS NULL`)
+                .all();
+            result.ghostEntryPoints = rows.map((r) => ({ id: r.id, table: 'flows' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        // ghost-entry-module: flows where entry_point_module_id IS NOT NULL AND NOT IN modules
+        try {
+            const rows = this.conn
+                .prepare(`SELECT f.id FROM flows f
+           LEFT JOIN modules m ON f.entry_point_module_id = m.id
+           WHERE f.entry_point_module_id IS NOT NULL AND m.id IS NULL`)
+                .all();
+            result.ghostEntryModules = rows.map((r) => ({ id: r.id, table: 'flows' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        // ghost-interaction: interactions where from_module_id or to_module_id NOT IN modules
+        try {
+            const rows = this.conn
+                .prepare(`SELECT i.id FROM interactions i
+           LEFT JOIN modules m1 ON i.from_module_id = m1.id
+           LEFT JOIN modules m2 ON i.to_module_id = m2.id
+           WHERE m1.id IS NULL OR m2.id IS NULL`)
+                .all();
+            result.ghostInteractions = rows.map((r) => ({ id: r.id, table: 'interactions' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        // ghost-subflow: flow_subflow_steps where subflow_id NOT IN flows
+        try {
+            const rows = this.conn
+                .prepare(`SELECT fss.rowid FROM flow_subflow_steps fss
+           LEFT JOIN flows f ON fss.subflow_id = f.id
+           WHERE f.id IS NULL`)
+                .all();
+            result.ghostSubflows = rows.map((r) => ({ rowid: r.rowid, table: 'flow_subflow_steps' }));
+        }
+        catch {
+            // Table doesn't exist
+        }
+        return result;
+    }
+    /**
+     * Delete a ghost row by table and primary key.
+     * Uses an allowlist of table names to prevent injection.
+     */
+    deleteGhostRow(table, id) {
+        const ALLOWED_TABLES = {
+            relationship_annotations: 'DELETE FROM relationship_annotations WHERE id = ?',
+            module_members: 'DELETE FROM module_members WHERE definition_id = ?',
+            flows: 'UPDATE flows SET entry_point_id = NULL, entry_point_module_id = NULL WHERE id = ?',
+            interactions: 'DELETE FROM interactions WHERE id = ?',
+            flow_subflow_steps: 'DELETE FROM flow_subflow_steps WHERE rowid = ?',
+        };
+        const sql = ALLOWED_TABLES[table];
+        if (!sql)
+            return false;
+        try {
+            const result = this.conn.prepare(sql).run(id);
+            return result.changes > 0;
+        }
+        catch {
+            return false;
+        }
+    }
+    /**
+     * Remove stale file entries (files that no longer exist on disk).
+     */
+    cleanStaleFiles() {
+        const allFiles = this.files.getAll();
+        const stalePaths = [];
+        for (const file of allFiles) {
+            try {
+                fs.accessSync(this.resolveFilePath(file.path));
+            }
+            catch {
+                stalePaths.push(file.path);
+            }
+        }
+        if (stalePaths.length === 0)
+            return { removed: 0, paths: [] };
+        const deleteDefinitions = this.conn.prepare('DELETE FROM definitions WHERE file_id = ?');
+        const deleteFile = this.conn.prepare('DELETE FROM files WHERE id = ?');
+        const cleanup = this.conn.transaction(() => {
+            for (const path of stalePaths) {
+                const fileId = this.files.getIdByPath(path);
+                if (fileId !== null) {
+                    deleteDefinitions.run(fileId);
+                    deleteFile.run(fileId);
+                }
+            }
+        });
+        cleanup();
+        return { removed: stalePaths.length, paths: stalePaths };
+    }
+}
+//# sourceMappingURL=database-facade.js.map

package/dist/db/database-facade.js.map

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package/dist/db/database.d.ts

@@ -0,0 +1,9 @@
+/**
+ * This file re-exports from the refactored database modules for backward compatibility.
+ * New code should import directly from the specific modules:
+ * - src/db/connection.ts for connection management
+ * - src/db/repositories/*.ts for specific repositories
+ */
+export { IndexDatabase } from './database-facade.js';
+export { computeHash, type FileInsert, type CallsiteResult, type DependencyInfo, type ReadySymbolInfo, type DependencyWithMetadata, type IncomingDependency, type RelationshipType, type RelationshipAnnotation, type RelationshipWithDetails, type Domain, type DomainWithCount, type Module, type ModuleMember, type ModuleTreeNode, type ModuleWithMembers, type CallGraphEdge, type Interaction, type InteractionWithPaths, type Flow, type FlowStep, type FlowSubflowStep, type FlowWithSteps, type FlowStakeholder, type FlowTreeNode, type ModuleCallEdge, type EnrichedModuleCallEdge, type CalledSymbolInfo, type ExpandedFlow, type FlowCoverageStats, type AnnotatedSymbolInfo, type AnnotatedEdgeInfo, type EnhancedRelationshipContext, type IIndexWriter, SCHEMA, } from './schema.js';
+//# sourceMappingURL=database.d.ts.map

package/dist/db/database.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"database.d.ts","sourceRoot":"","sources":["../../src/db/database.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAGrD,OAAO,EACL,WAAW,EACX,KAAK,UAAU,EACf,KAAK,cAAc,EACnB,KAAK,cAAc,EACnB,KAAK,eAAe,EACpB,KAAK,sBAAsB,EAC3B,KAAK,kBAAkB,EACvB,KAAK,gBAAgB,EACrB,KAAK,sBAAsB,EAC3B,KAAK,uBAAuB,EAC5B,KAAK,MAAM,EACX,KAAK,eAAe,EACpB,KAAK,MAAM,EACX,KAAK,YAAY,EACjB,KAAK,cAAc,EACnB,KAAK,iBAAiB,EACtB,KAAK,aAAa,EAClB,KAAK,WAAW,EAChB,KAAK,oBAAoB,EACzB,KAAK,IAAI,EACT,KAAK,QAAQ,EACb,KAAK,eAAe,EACpB,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,KAAK,YAAY,EACjB,KAAK,cAAc,EACnB,KAAK,sBAAsB,EAC3B,KAAK,gBAAgB,EACrB,KAAK,YAAY,EACjB,KAAK,iBAAiB,EACtB,KAAK,mBAAmB,EACxB,KAAK,iBAAiB,EACtB,KAAK,2BAA2B,EAChC,KAAK,YAAY,EACjB,MAAM,GACP,MAAM,aAAa,CAAC"}

package/dist/db/database.js

@@ -0,0 +1,11 @@
+/**
+ * This file re-exports from the refactored database modules for backward compatibility.
+ * New code should import directly from the specific modules:
+ * - src/db/connection.ts for connection management
+ * - src/db/repositories/*.ts for specific repositories
+ */
+// Re-export the facade as IndexDatabase for backward compatibility
+export { IndexDatabase } from './database-facade.js';
+// Re-export types from schema
+export { computeHash, SCHEMA, } from './schema.js';
+//# sourceMappingURL=database.js.map

package/dist/db/database.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"database.js","sourceRoot":"","sources":["../../src/db/database.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,mEAAmE;AACnE,OAAO,EAAE,aAAa,EAAE,MAAM,sBAAsB,CAAC;AAErD,8BAA8B;AAC9B,OAAO,EACL,WAAW,EAkCX,MAAM,GACP,MAAM,aAAa,CAAC"}

package/dist/db/index.d.ts

@@ -0,0 +1,7 @@
+export { createConnection, initializeSchema, closeConnection } from './connection.js';
+export { ensureModulesTables, ensureFlowsTables, ensureDomainsTable, ensureRelationshipTypeColumn, } from './schema-manager.js';
+export * from './schema.js';
+export * from './repositories/index.js';
+export { buildTree, buildSingleRootTree } from './utils/tree-builder.js';
+export type { TreeNode } from './utils/tree-builder.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/db/index.d.ts.map

@@ -0,0 +1 @@
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package/dist/db/index.js

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+// Connection management
+export { createConnection, initializeSchema, closeConnection } from './connection.js';
+// Schema manager
+export { ensureModulesTables, ensureFlowsTables, ensureDomainsTable, ensureRelationshipTypeColumn, } from './schema-manager.js';
+// Schema types and utilities
+export * from './schema.js';
+// All repositories
+export * from './repositories/index.js';
+// Tree utilities
+export { buildTree, buildSingleRootTree } from './utils/tree-builder.js';
+//# sourceMappingURL=index.js.map

package/dist/db/index.js.map

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package/dist/db/repositories/_shared/call-graph-query.d.ts

@@ -0,0 +1,10 @@
+import type Database from 'better-sqlite3';
+import type { CallGraphEdge } from '../../schema.js';
+/**
+ * Shared call graph query used by interaction, module, and graph repositories.
+ * The only difference is whether JSX contexts are included.
+ */
+export declare function queryCallGraphEdges(db: Database.Database, opts?: {
+    includeJsx?: boolean;
+}): CallGraphEdge[];
+//# sourceMappingURL=call-graph-query.d.ts.map

package/dist/db/repositories/_shared/call-graph-query.d.ts.map

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package/dist/db/repositories/_shared/call-graph-query.js

@@ -0,0 +1,59 @@
+/**
+ * Shared call graph query used by interaction, module, and graph repositories.
+ * The only difference is whether JSX contexts are included.
+ */
+export function queryCallGraphEdges(db, opts) {
+    const contexts = opts?.includeJsx
+        ? "'call_expression', 'new_expression', 'jsx_self_closing_element', 'jsx_opening_element'"
+        : "'call_expression', 'new_expression'";
+    const stmt = db.prepare(`
+    SELECT
+      caller.id as from_id,
+      s.definition_id as to_id,
+      COUNT(*) as weight,
+      MIN(u.line) as min_usage_line
+    FROM definitions caller
+    JOIN files f ON caller.file_id = f.id
+    JOIN symbols s ON s.file_id = f.id AND s.definition_id IS NOT NULL
+    JOIN usages u ON u.symbol_id = s.id
+    WHERE u.context IN (${contexts})
+      AND caller.line <= u.line AND u.line <= caller.end_line
+      AND s.definition_id != caller.id
+    GROUP BY caller.id, s.definition_id
+    UNION ALL
+    SELECT
+      caller.id as from_id,
+      s.definition_id as to_id,
+      COUNT(*) as weight,
+      MIN(u.line) as min_usage_line
+    FROM definitions caller
+    JOIN files f ON caller.file_id = f.id
+    JOIN imports i ON i.from_file_id = f.id
+    JOIN symbols s ON s.reference_id = i.id AND s.definition_id IS NOT NULL
+    JOIN usages u ON u.symbol_id = s.id
+    WHERE u.context IN (${contexts})
+      AND caller.line <= u.line AND u.line <= caller.end_line
+      AND s.definition_id != caller.id
+    GROUP BY caller.id, s.definition_id
+  `);
+    const rows = stmt.all();
+    const edgeMap = new Map();
+    for (const row of rows) {
+        const key = `${row.from_id}-${row.to_id}`;
+        const existing = edgeMap.get(key);
+        if (existing) {
+            existing.weight += row.weight;
+            existing.minUsageLine = Math.min(existing.minUsageLine, row.min_usage_line);
+        }
+        else {
+            edgeMap.set(key, {
+                fromId: row.from_id,
+                toId: row.to_id,
+                weight: row.weight,
+                minUsageLine: row.min_usage_line,
+            });
+        }
+    }
+    return Array.from(edgeMap.values());
+}
+//# sourceMappingURL=call-graph-query.js.map

package/dist/db/repositories/_shared/call-graph-query.js.map

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package/dist/db/repositories/call-graph-service.d.ts

@@ -0,0 +1,28 @@
+import type Database from 'better-sqlite3';
+import type { EnrichedModuleCallEdge, ModuleCallEdge } from '../schema.js';
+import type { InteractionRepository } from './interaction-repository.js';
+/**
+ * Service for module-level call graph analysis.
+ * Extracted from InteractionRepository to separate call graph analysis from CRUD.
+ */
+export declare class CallGraphService {
+    private db;
+    constructor(db: Database.Database);
+    /**
+     * Get the module-level call graph (for detecting interactions).
+     */
+    getModuleCallGraph(): ModuleCallEdge[];
+    /**
+     * Get enriched module-level call graph with symbol details.
+     */
+    getEnrichedModuleCallGraph(): EnrichedModuleCallEdge[];
+    /**
+     * Sync interactions from the module call graph.
+     * Creates or updates interactions based on detected module edges.
+     */
+    syncFromCallGraph(interactionRepo: InteractionRepository): {
+        created: number;
+        updated: number;
+    };
+}
+//# sourceMappingURL=call-graph-service.d.ts.map

package/dist/db/repositories/call-graph-service.d.ts.map

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