@zbigniewsobiecki/squint 1.0.0

package/dist/commands/process-groups/index.js.map

@@ -0,0 +1 @@
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package/dist/commands/process-groups/list.d.ts

@@ -0,0 +1,11 @@
+import { Command } from '@oclif/core';
+export default class ProcessGroupsList extends Command {
+    static description: string;
+    static examples: string[];
+    static flags: {
+        database: import("@oclif/core/interfaces").OptionFlag<string | undefined, import("@oclif/core/interfaces").CustomOptions>;
+        json: import("@oclif/core/interfaces").BooleanFlag<boolean>;
+    };
+    run(): Promise<void>;
+}
+//# sourceMappingURL=list.d.ts.map

package/dist/commands/process-groups/list.d.ts.map

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package/dist/commands/process-groups/list.js

@@ -0,0 +1,98 @@
+import { Command } from '@oclif/core';
+import chalk from 'chalk';
+import { SharedFlags, openDatabase } from '../_shared/index.js';
+import { computeProcessGroups, getProcessGroupLabel } from '../llm/_shared/process-utils.js';
+export default class ProcessGroupsList extends Command {
+    static description = 'List process groups (connected components in the import graph)';
+    static examples = [
+        '<%= config.bin %> process-groups -d index.db',
+        '<%= config.bin %> process-groups -d index.db --json',
+    ];
+    static flags = {
+        database: SharedFlags.database,
+        json: SharedFlags.json,
+    };
+    async run() {
+        const { flags } = await this.parse(ProcessGroupsList);
+        const db = await openDatabase(flags.database, this);
+        const isJson = flags.json;
+        try {
+            const groups = computeProcessGroups(db);
+            const major = [];
+            const isolated = [];
+            for (const [, modules] of groups.groupToModules) {
+                if (modules.length >= 2) {
+                    major.push({
+                        label: getProcessGroupLabel(modules),
+                        modules: modules.map((m) => ({
+                            id: m.id,
+                            fullPath: m.fullPath,
+                            name: m.name,
+                            description: m.description,
+                        })),
+                    });
+                }
+                else {
+                    for (const m of modules) {
+                        isolated.push({
+                            id: m.id,
+                            fullPath: m.fullPath,
+                            name: m.name,
+                            description: m.description,
+                        });
+                    }
+                }
+            }
+            // Sort major groups by size descending
+            major.sort((a, b) => b.modules.length - a.modules.length);
+            // Sort isolated alphabetically by fullPath
+            isolated.sort((a, b) => a.fullPath.localeCompare(b.fullPath));
+            // Sort modules within each major group alphabetically
+            for (const group of major) {
+                group.modules.sort((a, b) => a.fullPath.localeCompare(b.fullPath));
+            }
+            const totalModules = major.reduce((sum, g) => sum + g.modules.length, 0) + isolated.length;
+            if (isJson) {
+                this.log(JSON.stringify({
+                    groups: major.map((g) => ({
+                        label: g.label,
+                        moduleCount: g.modules.length,
+                        modules: g.modules,
+                    })),
+                    isolated,
+                    stats: {
+                        totalGroups: major.length + isolated.length,
+                        majorGroups: major.length,
+                        isolatedGroups: isolated.length,
+                        totalModules,
+                    },
+                }, null, 2));
+                return;
+            }
+            // Human-readable output
+            this.log(chalk.bold(`Process Groups (${major.length} major, ${isolated.length} isolated)`));
+            this.log('');
+            for (let i = 0; i < major.length; i++) {
+                const group = major[i];
+                this.log(chalk.bold(`Group ${i + 1}: ${group.label} (${group.modules.length} modules)`));
+                for (const mod of group.modules) {
+                    const desc = mod.description ? `  —  ${mod.description}` : '';
+                    this.log(`  ${mod.fullPath}${chalk.gray(desc)}`);
+                }
+                this.log('');
+            }
+            if (isolated.length > 0) {
+                this.log(chalk.bold(`Isolated (${isolated.length} modules in singleton groups)`));
+                for (const mod of isolated) {
+                    const desc = mod.description ? `  —  ${mod.description}` : '';
+                    this.log(`  ${mod.fullPath}${chalk.gray(desc)}`);
+                }
+                this.log('');
+            }
+        }
+        finally {
+            db.close();
+        }
+    }
+}
+//# sourceMappingURL=list.js.map

package/dist/commands/process-groups/list.js.map

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package/dist/commands/relationships/annotate.d.ts

@@ -0,0 +1,27 @@
+import { BaseLlmCommand, type LlmContext } from '../llm/_shared/base-llm-command.js';
+export default class RelationshipsAnnotate extends BaseLlmCommand {
+    static description: string;
+    static examples: string[];
+    static flags: {
+        'batch-size': import("@oclif/core/interfaces").OptionFlag<number, import("@oclif/core/interfaces").CustomOptions>;
+        'max-iterations': import("@oclif/core/interfaces").OptionFlag<number, import("@oclif/core/interfaces").CustomOptions>;
+        model: import("@oclif/core/interfaces").OptionFlag<string, import("@oclif/core/interfaces").CustomOptions>;
+        'dry-run': import("@oclif/core/interfaces").BooleanFlag<boolean>;
+        force: import("@oclif/core/interfaces").BooleanFlag<boolean>;
+        verbose: import("@oclif/core/interfaces").BooleanFlag<boolean>;
+        'show-llm-requests': import("@oclif/core/interfaces").BooleanFlag<boolean>;
+        'show-llm-responses': import("@oclif/core/interfaces").BooleanFlag<boolean>;
+        database: import("@oclif/core/interfaces").OptionFlag<string | undefined, import("@oclif/core/interfaces").CustomOptions>;
+        json: import("@oclif/core/interfaces").BooleanFlag<boolean>;
+    };
+    protected execute(ctx: LlmContext, flags: Record<string, unknown>): Promise<void>;
+    /**
+     * Build RelationshipSourceGroup[] for a batch of source symbol IDs.
+     */
+    private buildSourceGroups;
+    /**
+     * Build RelationshipSourceGroup[] for PENDING inheritance relationships.
+     */
+    private buildInheritanceSourceGroups;
+}
+//# sourceMappingURL=annotate.d.ts.map

package/dist/commands/relationships/annotate.d.ts.map

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package/dist/commands/relationships/annotate.js

@@ -0,0 +1,453 @@
+import { Flags } from '@oclif/core';
+import chalk from 'chalk';
+import { LlmFlags, SharedFlags, readSourceAsString } from '../_shared/index.js';
+import { BaseLlmCommand } from '../llm/_shared/base-llm-command.js';
+import { parseCombinedCsv } from '../llm/_shared/csv.js';
+import { completeWithLogging, groupBy, logLlmRequest, logLlmResponse, } from '../llm/_shared/llm-utils.js';
+import { buildRelationshipSystemPrompt, buildRelationshipUserPrompt, } from '../llm/_shared/prompts.js';
+export default class RelationshipsAnnotate extends BaseLlmCommand {
+    static description = 'Annotate relationships between symbols using an LLM';
+    static examples = [
+        '<%= config.bin %> relationships annotate',
+        '<%= config.bin %> relationships annotate --batch-size 10',
+        '<%= config.bin %> relationships annotate --dry-run',
+        '<%= config.bin %> relationships annotate --max-iterations 5',
+    ];
+    static flags = {
+        database: SharedFlags.database,
+        json: SharedFlags.json,
+        ...LlmFlags,
+        'batch-size': Flags.integer({
+            char: 'b',
+            description: 'Number of source symbols per LLM call',
+            default: 5,
+        }),
+        'max-iterations': Flags.integer({
+            description: 'Maximum iterations (0 = unlimited)',
+            default: 0,
+        }),
+    };
+    async execute(ctx, flags) {
+        const { db, isJson, dryRun, model } = ctx;
+        const batchSize = flags['batch-size'];
+        const maxIterations = flags['max-iterations'];
+        const llmLogOptions = {
+            showRequests: ctx.llmOptions.showLlmRequests,
+            showResponses: ctx.llmOptions.showLlmResponses,
+            isJson,
+        };
+        // Build system prompt once
+        const systemPrompt = buildRelationshipSystemPrompt();
+        // Tracking
+        let iteration = 0;
+        let totalAnnotations = 0;
+        let totalErrors = 0;
+        const jsonOutput = {
+            iterations: [],
+            summary: {
+                totalIterations: 0,
+                totalAnnotations: 0,
+                totalErrors: 0,
+                coverage: { annotated: 0, total: 0, percentage: 0 },
+            },
+        };
+        // Header
+        if (!isJson) {
+            this.log(chalk.bold('LLM Relationship Annotation'));
+            this.log(chalk.gray(`Model: ${model}, Batch size: ${batchSize}`));
+            if (dryRun) {
+                this.log(chalk.yellow('DRY RUN - annotations will not be persisted'));
+            }
+            this.log('');
+        }
+        // Check initial state
+        const initialUnannotated = db.relationships.getUnannotatedCount();
+        const initialPending = db.relationships.getUnannotatedInheritanceCount();
+        if (initialUnannotated === 0 && initialPending === 0) {
+            if (isJson) {
+                this.log(JSON.stringify({ message: 'All relationships are already annotated' }));
+            }
+            else {
+                this.log(chalk.green('All relationships are already annotated!'));
+            }
+            return;
+        }
+        if (!isJson) {
+            const initialAnnotated = db.relationships.getCount();
+            this.log(chalk.gray(`Unannotated relationships: ${initialUnannotated}, Already annotated: ${initialAnnotated}`));
+            this.log('');
+        }
+        while (true) {
+            iteration++;
+            // Check max iterations
+            if (maxIterations > 0 && iteration > maxIterations) {
+                if (!isJson) {
+                    this.log(chalk.yellow(`Reached maximum iterations (${maxIterations})`));
+                }
+                break;
+            }
+            // Fetch unannotated relationships
+            const unannotated = db.relationships.getUnannotated();
+            if (unannotated.length === 0) {
+                if (!isJson) {
+                    this.log(chalk.green('All relationships annotated!'));
+                }
+                break;
+            }
+            // Group by source symbol
+            const grouped = groupBy(unannotated, (r) => r.fromDefinitionId);
+            const sourceIds = [...grouped.keys()];
+            // Take a batch of source symbols
+            const batchSourceIds = sourceIds.slice(0, batchSize);
+            // Build source groups for prompt
+            const groups = await this.buildSourceGroups(db, batchSourceIds, grouped);
+            if (groups.length === 0) {
+                break;
+            }
+            const totalRelsInBatch = groups.reduce((sum, g) => sum + g.relationships.length, 0);
+            if (!isJson && ctx.verbose) {
+                this.log(chalk.gray(`Iteration ${iteration}: ${groups.length} source symbols, ${totalRelsInBatch} relationships`));
+            }
+            // Build user prompt
+            const userPrompt = buildRelationshipUserPrompt(groups);
+            logLlmRequest(this, `relationships-iter${iteration}`, systemPrompt, userPrompt, llmLogOptions);
+            // Call LLM
+            let response;
+            try {
+                response = await completeWithLogging({
+                    model,
+                    systemPrompt,
+                    userPrompt,
+                    temperature: 0,
+                    command: this,
+                    isJson,
+                    iteration: { current: iteration, max: maxIterations },
+                });
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : String(error);
+                if (isJson) {
+                    this.log(JSON.stringify({ error: `LLM API error: ${message}` }));
+                }
+                else {
+                    this.log(chalk.red(`LLM API error: ${message}`));
+                }
+                totalErrors++;
+                break;
+            }
+            logLlmResponse(this, `relationships-iter${iteration}`, response, llmLogOptions);
+            // Parse CSV
+            const parseResult = parseCombinedCsv(response);
+            // Log parse errors
+            for (const error of parseResult.errors) {
+                if (!isJson) {
+                    this.log(chalk.yellow(`  Warning: ${error}`));
+                }
+                totalErrors++;
+            }
+            // Build valid relationship map for this batch
+            const validRelationships = new Map();
+            for (const group of groups) {
+                const toIds = new Set(group.relationships.map((r) => r.toId));
+                validRelationships.set(group.id, toIds);
+            }
+            const validSourceIds = new Set(batchSourceIds);
+            let iterationAnnotations = 0;
+            let iterationErrors = 0;
+            // Process relationship rows
+            for (const row of parseResult.relationships) {
+                const { fromId, toId, value } = row;
+                // Validate source symbol
+                if (!validSourceIds.has(fromId)) {
+                    if (!isJson && ctx.verbose) {
+                        this.log(chalk.yellow(`  Skipped: invalid from_id ${fromId}`));
+                    }
+                    iterationErrors++;
+                    totalErrors++;
+                    continue;
+                }
+                // Validate relationship exists
+                const toIds = validRelationships.get(fromId);
+                if (!toIds || !toIds.has(toId)) {
+                    if (!isJson && ctx.verbose) {
+                        this.log(chalk.yellow(`  Skipped: unexpected relationship ${fromId} → ${toId}`));
+                    }
+                    iterationErrors++;
+                    totalErrors++;
+                    continue;
+                }
+                // Validate description length
+                if (!value || value.length < 5) {
+                    if (!isJson && ctx.verbose) {
+                        this.log(chalk.yellow(`  Skipped: description too short for ${fromId} → ${toId}`));
+                    }
+                    iterationErrors++;
+                    totalErrors++;
+                    continue;
+                }
+                // Persist
+                if (!dryRun) {
+                    db.relationships.set(fromId, toId, value);
+                }
+                iterationAnnotations++;
+                totalAnnotations++;
+            }
+            // Show iteration summary
+            if (isJson) {
+                jsonOutput.iterations.push({
+                    iteration,
+                    sourceSymbols: groups.length,
+                    annotated: iterationAnnotations,
+                    errors: iterationErrors,
+                });
+            }
+            else {
+                const remaining = db.relationships.getUnannotatedCount();
+                this.log(chalk.green(`  ✓ Annotated ${iterationAnnotations} relationships`) + chalk.gray(` (${remaining} remaining)`));
+            }
+        }
+        // Phase 2: Annotate PENDING inheritance relationships
+        const pendingInheritance = db.relationships.getUnannotatedInheritance(500);
+        if (pendingInheritance.length > 0) {
+            if (!isJson) {
+                this.log('');
+                this.log(chalk.bold(`Annotating ${pendingInheritance.length} PENDING inheritance relationships...`));
+            }
+            // Group by fromId
+            const inheritGrouped = new Map();
+            for (const rel of pendingInheritance) {
+                if (!inheritGrouped.has(rel.fromId))
+                    inheritGrouped.set(rel.fromId, []);
+                inheritGrouped.get(rel.fromId).push(rel);
+            }
+            const inheritSourceIds = [...inheritGrouped.keys()];
+            // Process in batches
+            for (let offset = 0; offset < inheritSourceIds.length; offset += batchSize) {
+                const batchIds = inheritSourceIds.slice(offset, offset + batchSize);
+                // Build source groups from PENDING inheritance relationships
+                const inheritGroups = await this.buildInheritanceSourceGroups(db, batchIds, inheritGrouped);
+                if (inheritGroups.length === 0)
+                    continue;
+                const totalRelsInBatch = inheritGroups.reduce((sum, g) => sum + g.relationships.length, 0);
+                iteration++;
+                if (!isJson && ctx.verbose) {
+                    this.log(chalk.gray(`  Inheritance batch: ${inheritGroups.length} source symbols, ${totalRelsInBatch} relationships`));
+                }
+                const userPrompt = buildRelationshipUserPrompt(inheritGroups);
+                logLlmRequest(this, `relationships-inherit-${offset}`, systemPrompt, userPrompt, llmLogOptions);
+                let response;
+                try {
+                    response = await completeWithLogging({
+                        model,
+                        systemPrompt,
+                        userPrompt,
+                        temperature: 0,
+                        command: this,
+                        isJson,
+                        iteration: { current: iteration, max: maxIterations },
+                    });
+                }
+                catch (error) {
+                    const message = error instanceof Error ? error.message : String(error);
+                    if (!isJson) {
+                        this.log(chalk.red(`  LLM API error: ${message}`));
+                    }
+                    totalErrors++;
+                    continue;
+                }
+                logLlmResponse(this, `relationships-inherit-${offset}`, response, llmLogOptions);
+                const parseResult = parseCombinedCsv(response);
+                for (const error of parseResult.errors) {
+                    if (!isJson) {
+                        this.log(chalk.yellow(`  Warning: ${error}`));
+                    }
+                    totalErrors++;
+                }
+                // Build valid relationship map for this batch
+                const validRelationships = new Map();
+                for (const group of inheritGroups) {
+                    const toIds = new Set(group.relationships.map((r) => r.toId));
+                    validRelationships.set(group.id, toIds);
+                }
+                const validSourceIds = new Set(batchIds);
+                let batchAnnotations = 0;
+                for (const row of parseResult.relationships) {
+                    const { fromId, toId, value } = row;
+                    if (!validSourceIds.has(fromId)) {
+                        totalErrors++;
+                        continue;
+                    }
+                    const toIds = validRelationships.get(fromId);
+                    if (!toIds || !toIds.has(toId)) {
+                        totalErrors++;
+                        continue;
+                    }
+                    if (!value || value.length < 5) {
+                        totalErrors++;
+                        continue;
+                    }
+                    if (!dryRun) {
+                        db.relationships.set(fromId, toId, value);
+                    }
+                    batchAnnotations++;
+                    totalAnnotations++;
+                }
+                if (!isJson) {
+                    const remaining = db.relationships.getUnannotatedInheritanceCount();
+                    this.log(chalk.green(`  ✓ Annotated ${batchAnnotations} inheritance relationships`) +
+                        chalk.gray(` (${remaining} PENDING remaining)`));
+                }
+            }
+        }
+        // Final summary
+        const finalAnnotated = db.relationships.getCount();
+        const finalUnannotated = db.relationships.getUnannotatedCount();
+        const finalPending = db.relationships.getUnannotatedInheritanceCount();
+        const finalTotal = finalAnnotated + finalUnannotated;
+        const finalCoverage = {
+            annotated: finalAnnotated,
+            total: finalTotal,
+            percentage: finalTotal > 0 ? (finalAnnotated / finalTotal) * 100 : 0,
+        };
+        if (isJson) {
+            jsonOutput.summary = {
+                totalIterations: iteration - 1,
+                totalAnnotations,
+                totalErrors,
+                coverage: finalCoverage,
+            };
+            this.log(JSON.stringify(jsonOutput, null, 2));
+        }
+        else {
+            this.log('');
+            this.log(chalk.bold('═'.repeat(50)));
+            this.log(chalk.bold('Relationship Annotation Complete'));
+            this.log(chalk.bold('═'.repeat(50)));
+            this.log('');
+            this.log(`Total iterations: ${iteration - 1}`);
+            this.log(`Annotations created: ${chalk.green(totalAnnotations)}`);
+            if (totalErrors > 0) {
+                this.log(`Errors: ${chalk.red(totalErrors)}`);
+            }
+            if (finalPending > 0) {
+                this.log(`PENDING inheritance: ${chalk.yellow(finalPending)}`);
+            }
+            this.log('');
+            const pctColor = finalCoverage.percentage >= 80 ? chalk.green : finalCoverage.percentage >= 50 ? chalk.yellow : chalk.red;
+            this.log(`Coverage: ${finalCoverage.annotated}/${finalCoverage.total} (${pctColor(`${finalCoverage.percentage.toFixed(1)}%`)})`);
+        }
+    }
+    /**
+     * Build RelationshipSourceGroup[] for a batch of source symbol IDs.
+     */
+    async buildSourceGroups(db, sourceIds, grouped) {
+        const groups = [];
+        for (const sourceId of sourceIds) {
+            const rels = grouped.get(sourceId);
+            if (!rels || rels.length === 0)
+                continue;
+            const def = db.definitions.getById(sourceId);
+            if (!def)
+                continue;
+            const sourceCode = await readSourceAsString(db.resolveFilePath(def.filePath), def.line, def.endLine);
+            const sourceMeta = db.metadata.get(sourceId);
+            let sourceDomains = null;
+            try {
+                if (sourceMeta.domain) {
+                    sourceDomains = JSON.parse(sourceMeta.domain);
+                }
+            }
+            catch {
+                /* ignore */
+            }
+            // Build target info
+            const relationships = [];
+            for (const rel of rels) {
+                const targetMeta = db.metadata.get(rel.toDefinitionId);
+                relationships.push({
+                    toId: rel.toDefinitionId,
+                    toName: rel.toName,
+                    toKind: rel.toKind,
+                    toFilePath: rel.toFilePath,
+                    toLine: rel.toLine,
+                    usageLine: rel.fromLine,
+                    relationshipType: 'uses',
+                    toPurpose: targetMeta.purpose || null,
+                    toDomains: null,
+                    toRole: targetMeta.role || null,
+                });
+            }
+            groups.push({
+                id: sourceId,
+                name: def.name,
+                kind: def.kind,
+                filePath: def.filePath,
+                line: def.line,
+                endLine: def.endLine,
+                sourceCode,
+                purpose: sourceMeta.purpose || null,
+                domains: sourceDomains,
+                role: sourceMeta.role || null,
+                relationships,
+            });
+        }
+        return groups;
+    }
+    /**
+     * Build RelationshipSourceGroup[] for PENDING inheritance relationships.
+     */
+    async buildInheritanceSourceGroups(db, sourceIds, grouped) {
+        const groups = [];
+        for (const sourceId of sourceIds) {
+            const rels = grouped.get(sourceId);
+            if (!rels || rels.length === 0)
+                continue;
+            const def = db.definitions.getById(sourceId);
+            if (!def)
+                continue;
+            const sourceCode = await readSourceAsString(db.resolveFilePath(def.filePath), def.line, def.endLine);
+            const sourceMeta = db.metadata.get(sourceId);
+            let sourceDomains = null;
+            try {
+                if (sourceMeta.domain) {
+                    sourceDomains = JSON.parse(sourceMeta.domain);
+                }
+            }
+            catch {
+                /* ignore */
+            }
+            const relationships = [];
+            for (const rel of rels) {
+                const targetDef = db.definitions.getById(rel.toId);
+                const targetMeta = db.metadata.get(rel.toId);
+                relationships.push({
+                    toId: rel.toId,
+                    toName: rel.toName,
+                    toKind: rel.toKind,
+                    toFilePath: rel.toFilePath,
+                    toLine: targetDef?.line ?? 1,
+                    usageLine: def.line,
+                    relationshipType: rel.relationshipType,
+                    toPurpose: targetMeta.purpose || null,
+                    toDomains: null,
+                    toRole: targetMeta.role || null,
+                });
+            }
+            groups.push({
+                id: sourceId,
+                name: def.name,
+                kind: def.kind,
+                filePath: def.filePath,
+                line: def.line,
+                endLine: def.endLine,
+                sourceCode,
+                purpose: sourceMeta.purpose || null,
+                domains: sourceDomains,
+                role: sourceMeta.role || null,
+                relationships,
+            });
+        }
+        return groups;
+    }
+}
+//# sourceMappingURL=annotate.js.map

package/dist/commands/relationships/annotate.js.map

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package/dist/commands/relationships/index.d.ts

@@ -0,0 +1,2 @@
+export { default } from './list.js';
+//# sourceMappingURL=index.d.ts.map

package/dist/commands/relationships/index.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/relationships/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC"}

package/dist/commands/relationships/index.js

@@ -0,0 +1,2 @@
+export { default } from './list.js';
+//# sourceMappingURL=index.js.map

package/dist/commands/relationships/index.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/relationships/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC"}