@wentorai/research-plugins 1.3.2 → 1.4.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (229) hide show
  1. package/README.md +32 -56
  2. package/curated/analysis/README.md +1 -13
  3. package/curated/domains/README.md +1 -5
  4. package/curated/literature/README.md +1 -10
  5. package/curated/research/README.md +1 -18
  6. package/curated/tools/README.md +1 -12
  7. package/curated/writing/README.md +1 -5
  8. package/index.ts +88 -5
  9. package/openclaw.plugin.json +3 -12
  10. package/package.json +3 -5
  11. package/skills/analysis/statistics/SKILL.md +1 -1
  12. package/skills/analysis/statistics/meta-analysis-guide/SKILL.md +1 -1
  13. package/skills/domains/ai-ml/SKILL.md +3 -2
  14. package/skills/domains/ai-ml/generative-ai-guide/SKILL.md +1 -0
  15. package/skills/domains/ai-ml/huggingface-api/SKILL.md +251 -0
  16. package/skills/domains/biomedical/SKILL.md +9 -2
  17. package/skills/domains/biomedical/alphafold-api/SKILL.md +227 -0
  18. package/skills/domains/biomedical/biothings-api/SKILL.md +296 -0
  19. package/skills/domains/biomedical/clinicaltrials-api-v2/SKILL.md +216 -0
  20. package/skills/domains/biomedical/enrichr-api/SKILL.md +264 -0
  21. package/skills/domains/biomedical/ensembl-rest-api/SKILL.md +204 -0
  22. package/skills/domains/biomedical/medical-data-api/SKILL.md +197 -0
  23. package/skills/domains/biomedical/pdb-structure-api/SKILL.md +219 -0
  24. package/skills/domains/business/SKILL.md +2 -3
  25. package/skills/domains/chemistry/SKILL.md +3 -2
  26. package/skills/domains/chemistry/catalysis-hub-api/SKILL.md +171 -0
  27. package/skills/domains/education/SKILL.md +2 -3
  28. package/skills/domains/law/SKILL.md +3 -2
  29. package/skills/domains/law/uk-legislation-api/SKILL.md +179 -0
  30. package/skills/literature/fulltext/SKILL.md +3 -2
  31. package/skills/literature/fulltext/arxiv-latex-source/SKILL.md +195 -0
  32. package/skills/literature/search/SKILL.md +2 -3
  33. package/skills/research/automation/SKILL.md +2 -3
  34. package/skills/research/automation/datagen-research-guide/SKILL.md +1 -0
  35. package/skills/research/automation/mle-agent-guide/SKILL.md +1 -0
  36. package/skills/research/automation/paper-to-agent-guide/SKILL.md +1 -0
  37. package/skills/research/deep-research/auto-deep-research-guide/SKILL.md +1 -0
  38. package/skills/research/methodology/SKILL.md +1 -1
  39. package/skills/research/methodology/claude-scientific-guide/SKILL.md +1 -0
  40. package/skills/research/methodology/qualitative-research-guide/SKILL.md +1 -1
  41. package/skills/research/paper-review/SKILL.md +1 -1
  42. package/skills/research/paper-review/peer-review-guide/SKILL.md +1 -1
  43. package/skills/tools/knowledge-graph/SKILL.md +2 -3
  44. package/skills/tools/ocr-translate/zotero-pdf2zh-guide/SKILL.md +1 -0
  45. package/skills/writing/citation/obsidian-citation-guide/SKILL.md +1 -0
  46. package/skills/writing/citation/obsidian-zotero-guide/SKILL.md +1 -0
  47. package/skills/writing/citation/papersgpt-zotero-guide/SKILL.md +1 -0
  48. package/skills/writing/citation/zotero-mdnotes-guide/SKILL.md +1 -0
  49. package/skills/writing/citation/zotero-reference-guide/SKILL.md +1 -0
  50. package/skills/writing/composition/scientific-writing-resources/SKILL.md +1 -0
  51. package/skills/writing/latex/latex-drawing-collection/SKILL.md +1 -0
  52. package/skills/writing/latex/latex-templates-collection/SKILL.md +1 -0
  53. package/skills/writing/templates/novathesis-guide/SKILL.md +1 -0
  54. package/src/tools/arxiv.ts +78 -30
  55. package/src/tools/biorxiv.ts +142 -0
  56. package/src/tools/crossref.ts +60 -22
  57. package/src/tools/datacite.ts +188 -0
  58. package/src/tools/dblp.ts +125 -0
  59. package/src/tools/doaj.ts +82 -0
  60. package/src/tools/europe-pmc.ts +159 -0
  61. package/src/tools/hal.ts +118 -0
  62. package/src/tools/inspire-hep.ts +165 -0
  63. package/src/tools/openaire.ts +158 -0
  64. package/src/tools/openalex.ts +20 -15
  65. package/src/tools/opencitations.ts +103 -0
  66. package/src/tools/orcid.ts +136 -0
  67. package/src/tools/osf-preprints.ts +104 -0
  68. package/src/tools/pubmed.ts +19 -13
  69. package/src/tools/ror.ts +118 -0
  70. package/src/tools/unpaywall.ts +12 -6
  71. package/src/tools/util.ts +141 -0
  72. package/src/tools/zenodo.ts +154 -0
  73. package/mcp-configs/academic-db/ChatSpatial.json +0 -17
  74. package/mcp-configs/academic-db/academia-mcp.json +0 -17
  75. package/mcp-configs/academic-db/academic-paper-explorer.json +0 -17
  76. package/mcp-configs/academic-db/academic-search-mcp-server.json +0 -17
  77. package/mcp-configs/academic-db/agentinterviews-mcp.json +0 -17
  78. package/mcp-configs/academic-db/all-in-mcp.json +0 -17
  79. package/mcp-configs/academic-db/alphafold-mcp.json +0 -20
  80. package/mcp-configs/academic-db/apple-health-mcp.json +0 -17
  81. package/mcp-configs/academic-db/arxiv-latex-mcp.json +0 -17
  82. package/mcp-configs/academic-db/arxiv-mcp-server.json +0 -17
  83. package/mcp-configs/academic-db/bgpt-mcp.json +0 -17
  84. package/mcp-configs/academic-db/biomcp.json +0 -17
  85. package/mcp-configs/academic-db/biothings-mcp.json +0 -17
  86. package/mcp-configs/academic-db/brightspace-mcp.json +0 -21
  87. package/mcp-configs/academic-db/catalysishub-mcp-server.json +0 -17
  88. package/mcp-configs/academic-db/climatiq-mcp.json +0 -20
  89. package/mcp-configs/academic-db/clinicaltrialsgov-mcp-server.json +0 -17
  90. package/mcp-configs/academic-db/deep-research-mcp.json +0 -17
  91. package/mcp-configs/academic-db/dicom-mcp.json +0 -17
  92. package/mcp-configs/academic-db/enrichr-mcp-server.json +0 -17
  93. package/mcp-configs/academic-db/fec-mcp-server.json +0 -17
  94. package/mcp-configs/academic-db/fhir-mcp-server-themomentum.json +0 -17
  95. package/mcp-configs/academic-db/fhir-mcp.json +0 -19
  96. package/mcp-configs/academic-db/gget-mcp.json +0 -17
  97. package/mcp-configs/academic-db/gibs-mcp.json +0 -20
  98. package/mcp-configs/academic-db/gis-mcp-server.json +0 -22
  99. package/mcp-configs/academic-db/google-earth-engine-mcp.json +0 -21
  100. package/mcp-configs/academic-db/google-researcher-mcp.json +0 -17
  101. package/mcp-configs/academic-db/idea-reality-mcp.json +0 -17
  102. package/mcp-configs/academic-db/legiscan-mcp.json +0 -19
  103. package/mcp-configs/academic-db/lex.json +0 -17
  104. package/mcp-configs/academic-db/m4-clinical-mcp.json +0 -21
  105. package/mcp-configs/academic-db/medical-mcp.json +0 -21
  106. package/mcp-configs/academic-db/nexonco-mcp.json +0 -20
  107. package/mcp-configs/academic-db/omop-mcp.json +0 -20
  108. package/mcp-configs/academic-db/onekgpd-mcp.json +0 -20
  109. package/mcp-configs/academic-db/openedu-mcp.json +0 -20
  110. package/mcp-configs/academic-db/opengenes-mcp.json +0 -20
  111. package/mcp-configs/academic-db/openstax-mcp.json +0 -21
  112. package/mcp-configs/academic-db/openstreetmap-mcp.json +0 -21
  113. package/mcp-configs/academic-db/opentargets-mcp.json +0 -21
  114. package/mcp-configs/academic-db/pdb-mcp.json +0 -21
  115. package/mcp-configs/academic-db/smithsonian-mcp.json +0 -20
  116. package/mcp-configs/ai-platform/Adaptive-Graph-of-Thoughts-MCP-server.json +0 -17
  117. package/mcp-configs/ai-platform/ai-counsel.json +0 -17
  118. package/mcp-configs/ai-platform/atlas-mcp-server.json +0 -17
  119. package/mcp-configs/ai-platform/counsel-mcp.json +0 -17
  120. package/mcp-configs/ai-platform/cross-llm-mcp.json +0 -17
  121. package/mcp-configs/ai-platform/gptr-mcp.json +0 -17
  122. package/mcp-configs/ai-platform/magi-researchers.json +0 -21
  123. package/mcp-configs/ai-platform/mcp-academic-researcher.json +0 -22
  124. package/mcp-configs/ai-platform/open-paper-machine.json +0 -21
  125. package/mcp-configs/ai-platform/paper-intelligence.json +0 -21
  126. package/mcp-configs/ai-platform/paper-reader.json +0 -21
  127. package/mcp-configs/ai-platform/paperdebugger.json +0 -21
  128. package/mcp-configs/browser/decipher-research-agent.json +0 -17
  129. package/mcp-configs/browser/deep-research.json +0 -17
  130. package/mcp-configs/browser/everything-claude-code.json +0 -17
  131. package/mcp-configs/browser/exa-mcp.json +0 -20
  132. package/mcp-configs/browser/gpt-researcher.json +0 -17
  133. package/mcp-configs/browser/heurist-agent-framework.json +0 -17
  134. package/mcp-configs/browser/mcp-searxng.json +0 -21
  135. package/mcp-configs/browser/mcp-webresearch.json +0 -20
  136. package/mcp-configs/cloud-docs/confluence-mcp.json +0 -37
  137. package/mcp-configs/cloud-docs/google-drive-mcp.json +0 -35
  138. package/mcp-configs/cloud-docs/notion-mcp.json +0 -29
  139. package/mcp-configs/communication/discord-mcp.json +0 -29
  140. package/mcp-configs/communication/discourse-mcp.json +0 -21
  141. package/mcp-configs/communication/slack-mcp.json +0 -29
  142. package/mcp-configs/communication/telegram-mcp.json +0 -28
  143. package/mcp-configs/data-platform/4everland-hosting-mcp.json +0 -17
  144. package/mcp-configs/data-platform/automl-stat-mcp.json +0 -21
  145. package/mcp-configs/data-platform/context-keeper.json +0 -17
  146. package/mcp-configs/data-platform/context7.json +0 -19
  147. package/mcp-configs/data-platform/contextstream-mcp.json +0 -17
  148. package/mcp-configs/data-platform/email-mcp.json +0 -17
  149. package/mcp-configs/data-platform/jefferson-stats-mcp.json +0 -22
  150. package/mcp-configs/data-platform/mcp-excel-server.json +0 -21
  151. package/mcp-configs/data-platform/mcp-stata.json +0 -21
  152. package/mcp-configs/data-platform/mcpstack-jupyter.json +0 -21
  153. package/mcp-configs/data-platform/ml-mcp.json +0 -21
  154. package/mcp-configs/data-platform/nasdaq-data-link-mcp.json +0 -20
  155. package/mcp-configs/data-platform/numpy-mcp.json +0 -21
  156. package/mcp-configs/database/neo4j-mcp.json +0 -37
  157. package/mcp-configs/database/postgres-mcp.json +0 -28
  158. package/mcp-configs/database/sqlite-mcp.json +0 -29
  159. package/mcp-configs/dev-platform/geogebra-mcp.json +0 -21
  160. package/mcp-configs/dev-platform/github-mcp.json +0 -31
  161. package/mcp-configs/dev-platform/gitlab-mcp.json +0 -34
  162. package/mcp-configs/dev-platform/latex-mcp-server.json +0 -21
  163. package/mcp-configs/dev-platform/manim-mcp.json +0 -20
  164. package/mcp-configs/dev-platform/mcp-echarts.json +0 -20
  165. package/mcp-configs/dev-platform/panel-viz-mcp.json +0 -20
  166. package/mcp-configs/dev-platform/paperbanana.json +0 -20
  167. package/mcp-configs/dev-platform/texflow-mcp.json +0 -20
  168. package/mcp-configs/dev-platform/texmcp.json +0 -20
  169. package/mcp-configs/dev-platform/typst-mcp.json +0 -21
  170. package/mcp-configs/dev-platform/vizro-mcp.json +0 -20
  171. package/mcp-configs/email/email-mcp.json +0 -40
  172. package/mcp-configs/email/gmail-mcp.json +0 -37
  173. package/mcp-configs/note-knowledge/ApeRAG.json +0 -17
  174. package/mcp-configs/note-knowledge/In-Memoria.json +0 -17
  175. package/mcp-configs/note-knowledge/agent-memory.json +0 -17
  176. package/mcp-configs/note-knowledge/aimemo.json +0 -17
  177. package/mcp-configs/note-knowledge/biel-mcp.json +0 -19
  178. package/mcp-configs/note-knowledge/cognee.json +0 -17
  179. package/mcp-configs/note-knowledge/context-awesome.json +0 -17
  180. package/mcp-configs/note-knowledge/context-mcp.json +0 -17
  181. package/mcp-configs/note-knowledge/conversation-handoff-mcp.json +0 -17
  182. package/mcp-configs/note-knowledge/cortex.json +0 -17
  183. package/mcp-configs/note-knowledge/devrag.json +0 -17
  184. package/mcp-configs/note-knowledge/easy-obsidian-mcp.json +0 -17
  185. package/mcp-configs/note-knowledge/engram.json +0 -17
  186. package/mcp-configs/note-knowledge/gnosis-mcp.json +0 -17
  187. package/mcp-configs/note-knowledge/graphlit-mcp-server.json +0 -19
  188. package/mcp-configs/note-knowledge/local-faiss-mcp.json +0 -21
  189. package/mcp-configs/note-knowledge/mcp-memory-service.json +0 -21
  190. package/mcp-configs/note-knowledge/mcp-obsidian.json +0 -23
  191. package/mcp-configs/note-knowledge/mcp-ragdocs.json +0 -20
  192. package/mcp-configs/note-knowledge/mcp-summarizer.json +0 -21
  193. package/mcp-configs/note-knowledge/mediawiki-mcp.json +0 -21
  194. package/mcp-configs/note-knowledge/openzim-mcp.json +0 -20
  195. package/mcp-configs/note-knowledge/zettelkasten-mcp.json +0 -21
  196. package/mcp-configs/reference-mgr/academic-paper-mcp-http.json +0 -20
  197. package/mcp-configs/reference-mgr/academix.json +0 -20
  198. package/mcp-configs/reference-mgr/arxiv-cli.json +0 -17
  199. package/mcp-configs/reference-mgr/arxiv-research-mcp.json +0 -21
  200. package/mcp-configs/reference-mgr/arxiv-search-mcp.json +0 -17
  201. package/mcp-configs/reference-mgr/chiken.json +0 -17
  202. package/mcp-configs/reference-mgr/claude-scholar.json +0 -17
  203. package/mcp-configs/reference-mgr/devonthink-mcp.json +0 -17
  204. package/mcp-configs/reference-mgr/google-scholar-abstract-mcp.json +0 -19
  205. package/mcp-configs/reference-mgr/google-scholar-mcp.json +0 -20
  206. package/mcp-configs/reference-mgr/mcp-paperswithcode.json +0 -21
  207. package/mcp-configs/reference-mgr/mcp-scholarly.json +0 -20
  208. package/mcp-configs/reference-mgr/mcp-simple-arxiv.json +0 -20
  209. package/mcp-configs/reference-mgr/mcp-simple-pubmed.json +0 -20
  210. package/mcp-configs/reference-mgr/mcp-zotero.json +0 -21
  211. package/mcp-configs/reference-mgr/mendeley-mcp.json +0 -20
  212. package/mcp-configs/reference-mgr/ncbi-mcp-server.json +0 -22
  213. package/mcp-configs/reference-mgr/onecite.json +0 -21
  214. package/mcp-configs/reference-mgr/paper-search-mcp.json +0 -21
  215. package/mcp-configs/reference-mgr/pubmed-search-mcp.json +0 -21
  216. package/mcp-configs/reference-mgr/scholar-mcp.json +0 -21
  217. package/mcp-configs/reference-mgr/scholar-multi-mcp.json +0 -21
  218. package/mcp-configs/reference-mgr/seerai.json +0 -21
  219. package/mcp-configs/reference-mgr/semantic-scholar-fastmcp.json +0 -21
  220. package/mcp-configs/reference-mgr/sourcelibrary.json +0 -20
  221. package/mcp-configs/registry.json +0 -476
  222. package/mcp-configs/repository/dataverse-mcp.json +0 -33
  223. package/mcp-configs/repository/huggingface-mcp.json +0 -29
  224. package/skills/domains/business/xpert-bi-guide/SKILL.md +0 -84
  225. package/skills/domains/education/edumcp-guide/SKILL.md +0 -74
  226. package/skills/literature/search/paper-search-mcp-guide/SKILL.md +0 -107
  227. package/skills/research/automation/mcp-server-guide/SKILL.md +0 -211
  228. package/skills/tools/knowledge-graph/paperpile-notion-guide/SKILL.md +0 -84
  229. package/src/tools/semantic-scholar.ts +0 -66
@@ -1,17 +0,0 @@
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- {
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- "id": "context-keeper",
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- "name": "Context Keeper",
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- "description": "Wide-recall RAG with vector, timeline, and knowledge graph retrieval strategies",
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- "category": "data-platform",
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- "install": {
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- "runtime": "node",
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- "package": "github:redleaves/context-keeper",
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- "command": "go install github.com/redleaves/context-keeper@latest"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": ["store", "retrieve", "search"],
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- "verified": false,
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- "source": "https://github.com/redleaves/context-keeper"
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- }
@@ -1,19 +0,0 @@
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- {
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- "id": "context7",
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- "name": "Context7",
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- "description": "Context management for AI agents with cloud sync powered by Upstash",
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- "category": "data-platform",
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- "install": {
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- "runtime": "node",
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- "package": "context7",
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- "command": "npx context7"
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- },
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- "config": {
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- "env": {
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- "UPSTASH_TOKEN": ""
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- }
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- },
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- "tools": ["store", "retrieve", "sync"],
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- "verified": false,
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- "source": "https://github.com/upstash/context7"
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- }
@@ -1,17 +0,0 @@
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- {
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- "id": "contextstream-mcp",
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- "name": "ContextStream MCP",
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- "description": "Universal persistent memory with semantic code search and change tracking",
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- "category": "data-platform",
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- "install": {
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- "runtime": "node",
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- "package": "contextstream-mcp",
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- "command": "npx contextstream-mcp"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": ["index", "search", "track"],
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- "verified": false,
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- "source": "https://github.com/contextstream/mcp-server"
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- }
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- {
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- "id": "email-mcp",
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- "name": "Email MCP",
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- "description": "Unified email across Gmail, Outlook, iCloud, and IMAP for search, send, and organize",
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- "category": "data-platform",
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- "install": {
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- "runtime": "node",
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- "package": "email-mcp",
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- "command": "npx email-mcp"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": ["search", "send", "organize"],
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- "verified": false,
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- "source": "https://github.com/marlinjai/email-mcp"
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- }
@@ -1,22 +0,0 @@
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- {
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- "id": "jefferson-stats-mcp",
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- "name": "Jefferson Stats MCP",
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- "description": "40+ statistical analysis tools: hypothesis testing, regression",
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- "category": "data-platform",
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- "install": {
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- "runtime": "python",
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- "package": "jefferson-stats-mcp",
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- "command": "pip install jefferson-stats-mcp"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": [
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- "t_test",
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- "anova",
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- "regression",
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- "chi_square"
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- ],
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- "verified": false,
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- "source": "https://github.com/jjohare/JeffersonStatsMCP"
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- }
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- {
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- "id": "mcp-excel-server",
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- "name": "Excel MCP Server",
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- "description": "Natural language interaction with Excel files",
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- "category": "data-platform",
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- "install": {
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- "runtime": "node",
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- "package": "mcp-excel-server",
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- "command": "npm install -g mcp-excel-server"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": [
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- "read_sheet",
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- "query",
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- "write"
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- ],
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- "verified": false,
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- "source": "https://github.com/jjohare/mcp-excel-server"
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- }
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- {
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- "id": "mcp-stata",
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- "name": "Stata MCP",
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- "description": "Execute Stata commands and inspect data via MCP",
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- "category": "data-platform",
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- "install": {
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- "runtime": "python",
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- "package": "mcp-stata",
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- "command": "pip install mcp-stata"
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- },
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- "config": {
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- "env": {}
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- },
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- "tools": [
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- "execute",
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- "get_data",
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- "describe"
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- ],
19
- "verified": false,
20
- "source": "https://github.com/hannesrudolph/mcp-stata"
21
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "mcpstack-jupyter",
3
- "name": "Jupyter MCP Stack",
4
- "description": "Jupyter Notebook reproducible analysis via MCP",
5
- "category": "data-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "mcpstack-jupyter",
9
- "command": "pip install mcpstack-jupyter"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "execute_cell",
16
- "create_notebook",
17
- "get_output"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/mcpstack-jupyter"
21
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "ml-mcp",
3
- "name": "ML Training MCP",
4
- "description": "ML model training, fine-tuning, and experimentation",
5
- "category": "data-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "ml-mcp",
9
- "command": "pip install ml-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "train",
16
- "evaluate",
17
- "predict"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/ml-mcp"
21
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "nasdaq-data-link-mcp",
3
- "name": "Nasdaq Data Link MCP",
4
- "description": "Financial and economic datasets from Nasdaq",
5
- "category": "data-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "nasdaq-data-link-mcp",
9
- "command": "pip install nasdaq-data-link-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "get_dataset",
16
- "search"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/jjohare/nasdaq-data-link-mcp"
20
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "numpy-mcp",
3
- "name": "NumPy MCP",
4
- "description": "Numerical computations with NumPy via MCP",
5
- "category": "data-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "numpy-mcp",
9
- "command": "pip install numpy-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "compute",
16
- "linalg",
17
- "stats"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/numpy-mcp"
21
- }
@@ -1,37 +0,0 @@
1
- {
2
- "id": "neo4j-mcp",
3
- "name": "Neo4j MCP",
4
- "description": "Neo4j graph database for knowledge graphs — run Cypher queries, traverse relationships, and build citation or concept graphs for research.",
5
- "category": "database",
6
- "install": {
7
- "runtime": "python",
8
- "package": "mcp-neo4j",
9
- "command": "pip install mcp-neo4j"
10
- },
11
- "config": {
12
- "env": {
13
- "NEO4J_URI": {
14
- "description": "Neo4j connection URI (e.g. bolt://localhost:7687)",
15
- "required": true
16
- },
17
- "NEO4J_USERNAME": {
18
- "description": "Neo4j database username",
19
- "required": true
20
- },
21
- "NEO4J_PASSWORD": {
22
- "description": "Neo4j database password",
23
- "required": true
24
- }
25
- }
26
- },
27
- "tools": [
28
- "run_cypher_query",
29
- "get_node",
30
- "get_relationships",
31
- "create_node",
32
- "create_relationship",
33
- "get_schema"
34
- ],
35
- "verified": false,
36
- "source": "https://github.com/neo4j-contrib/mcp-neo4j"
37
- }
@@ -1,28 +0,0 @@
1
- {
2
- "id": "postgres-mcp",
3
- "name": "PostgreSQL MCP",
4
- "description": "PostgreSQL database integration — run SQL queries, inspect schemas, and manage tables in PostgreSQL databases for structured research data.",
5
- "category": "database",
6
- "install": {
7
- "runtime": "node",
8
- "package": "@anthropic/mcp-server-postgres",
9
- "command": "npm install @anthropic/mcp-server-postgres"
10
- },
11
- "config": {
12
- "env": {
13
- "POSTGRES_CONNECTION_STRING": {
14
- "description": "PostgreSQL connection string (e.g. postgresql://user:pass@host:5432/dbname)",
15
- "required": true
16
- }
17
- }
18
- },
19
- "tools": [
20
- "execute_query",
21
- "list_tables",
22
- "describe_table",
23
- "list_schemas",
24
- "read_query"
25
- ],
26
- "verified": false,
27
- "source": "https://github.com/anthropics/mcp-server-postgres"
28
- }
@@ -1,29 +0,0 @@
1
- {
2
- "id": "sqlite-mcp",
3
- "name": "SQLite MCP",
4
- "description": "SQLite database operations — execute queries, inspect schemas, create tables, and manage local SQLite databases for research data storage.",
5
- "category": "database",
6
- "install": {
7
- "runtime": "python",
8
- "package": "mcp-server-sqlite",
9
- "command": "pip install mcp-server-sqlite"
10
- },
11
- "config": {
12
- "env": {
13
- "SQLITE_DB_PATH": {
14
- "description": "Path to the SQLite database file",
15
- "required": true
16
- }
17
- }
18
- },
19
- "tools": [
20
- "execute_query",
21
- "list_tables",
22
- "describe_table",
23
- "create_table",
24
- "insert_data",
25
- "read_query"
26
- ],
27
- "verified": false,
28
- "source": "https://github.com/anthropics/mcp-server-sqlite"
29
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "geogebra-mcp",
3
- "name": "GeoGebra MCP",
4
- "description": "GeoGebra geometric construction, plotting, CAS",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "geogebra-mcp-server",
9
- "command": "npm install -g geogebra-mcp-server"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "construct",
16
- "plot",
17
- "compute"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/geogebra-mcp-server"
21
- }
@@ -1,31 +0,0 @@
1
- {
2
- "id": "github-mcp",
3
- "name": "GitHub MCP",
4
- "description": "GitHub repository and issue management — create issues, manage pull requests, search repositories, and access code for open-source research projects.",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "@anthropic/mcp-server-github",
9
- "command": "npm install @anthropic/mcp-server-github"
10
- },
11
- "config": {
12
- "env": {
13
- "GITHUB_TOKEN": {
14
- "description": "GitHub personal access token (classic or fine-grained)",
15
- "required": true
16
- }
17
- }
18
- },
19
- "tools": [
20
- "search_repositories",
21
- "get_repository",
22
- "list_issues",
23
- "create_issue",
24
- "get_pull_request",
25
- "create_pull_request",
26
- "get_file_contents",
27
- "search_code"
28
- ],
29
- "verified": false,
30
- "source": "https://github.com/anthropics/mcp-server-github"
31
- }
@@ -1,34 +0,0 @@
1
- {
2
- "id": "gitlab-mcp",
3
- "name": "GitLab MCP",
4
- "description": "GitLab project management — manage repositories, issues, merge requests, and CI/CD pipelines for research software development.",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "mcp-server-gitlab",
9
- "command": "npm install mcp-server-gitlab"
10
- },
11
- "config": {
12
- "env": {
13
- "GITLAB_TOKEN": {
14
- "description": "GitLab personal access token",
15
- "required": true
16
- },
17
- "GITLAB_URL": {
18
- "description": "GitLab instance URL (defaults to https://gitlab.com)",
19
- "required": false
20
- }
21
- }
22
- },
23
- "tools": [
24
- "list_projects",
25
- "get_project",
26
- "list_issues",
27
- "create_issue",
28
- "list_merge_requests",
29
- "get_file_contents",
30
- "search_projects"
31
- ],
32
- "verified": false,
33
- "source": "https://github.com/theailanguage/mcp-server-gitlab"
34
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "latex-mcp-server",
3
- "name": "LaTeX MCP Server",
4
- "description": "Compile LaTeX, download cited papers, run viz scripts",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "latex-mcp-server",
9
- "command": "pip install latex-mcp-server"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "compile",
16
- "download_papers",
17
- "run_viz"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/latex-mcp-server"
21
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "manim-mcp",
3
- "name": "Manim Animation MCP",
4
- "description": "Manim animation generation for math/science presentations",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "manim-mcp-server",
9
- "command": "pip install manim-mcp-server"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "create_animation",
16
- "render"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/nicosantos-mcp/manim-mcp-server"
20
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "mcp-echarts",
3
- "name": "ECharts MCP",
4
- "description": "Generate visual charts using Apache ECharts",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "mcp-echarts",
9
- "command": "npm install -g mcp-echarts"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "create_chart",
16
- "render"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/jjohare/mcp-echarts"
20
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "panel-viz-mcp",
3
- "name": "Panel Viz MCP",
4
- "description": "Interactive HoloViz visualizations inline in AI chat",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "panel-viz-mcp",
9
- "command": "pip install panel-viz-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "create_viz",
16
- "render"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/jjohare/panel-viz-mcp"
20
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "paperbanana",
3
- "name": "PaperBanana MCP",
4
- "description": "Automated academic figures and research visuals",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "paperbanana",
9
- "command": "pip install paperbanana"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "generate_figure",
16
- "plot"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/google-research/paperbanana"
20
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "texflow-mcp",
3
- "name": "TeXFlow MCP",
4
- "description": "LaTeX document compiler with MCP interface",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "texflow-mcp",
9
- "command": "npm install -g texflow-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "compile",
16
- "preview"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/jjohare/texflow-mcp"
20
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "texmcp",
3
- "name": "TexMCP",
4
- "description": "FastMCP microservice for LaTeX to PDF rendering",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "texmcp",
9
- "command": "pip install texmcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "render",
16
- "compile"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/jjohare/TexMCP"
20
- }
@@ -1,21 +0,0 @@
1
- {
2
- "id": "typst-mcp",
3
- "name": "Typst MCP",
4
- "description": "Typst typesetting: convert LaTeX to Typst, validate, render",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "node",
8
- "package": "typst-mcp",
9
- "command": "npm install -g typst-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "compile",
16
- "convert",
17
- "validate"
18
- ],
19
- "verified": false,
20
- "source": "https://github.com/jjohare/typst-mcp"
21
- }
@@ -1,20 +0,0 @@
1
- {
2
- "id": "vizro-mcp",
3
- "name": "Vizro Dashboard MCP",
4
- "description": "McKinsey Vizro validated data charts and dashboards",
5
- "category": "dev-platform",
6
- "install": {
7
- "runtime": "python",
8
- "package": "vizro-mcp",
9
- "command": "pip install vizro-mcp"
10
- },
11
- "config": {
12
- "env": {}
13
- },
14
- "tools": [
15
- "create_dashboard",
16
- "create_chart"
17
- ],
18
- "verified": false,
19
- "source": "https://github.com/mckinsey/vizro-mcp"
20
- }
@@ -1,40 +0,0 @@
1
- {
2
- "id": "imap-smtp-mcp",
3
- "name": "IMAP/SMTP Email MCP",
4
- "description": "Universal IMAP/SMTP email server — connect to any email provider via standard protocols for reading, searching, and sending emails.",
5
- "category": "email",
6
- "install": {
7
- "runtime": "python",
8
- "package": "email-mcp",
9
- "command": "pip install email-mcp"
10
- },
11
- "config": {
12
- "env": {
13
- "IMAP_HOST": {
14
- "description": "IMAP server hostname (e.g. imap.gmail.com)",
15
- "required": true
16
- },
17
- "SMTP_HOST": {
18
- "description": "SMTP server hostname (e.g. smtp.gmail.com)",
19
- "required": true
20
- },
21
- "EMAIL_USERNAME": {
22
- "description": "Email account username or address",
23
- "required": true
24
- },
25
- "EMAIL_PASSWORD": {
26
- "description": "Email account password or app-specific password",
27
- "required": true
28
- }
29
- }
30
- },
31
- "tools": [
32
- "search_emails",
33
- "read_email",
34
- "send_email",
35
- "list_folders",
36
- "move_email"
37
- ],
38
- "verified": false,
39
- "source": "https://github.com/codefuturist/email-mcp"
40
- }