@wentorai/research-plugins 1.0.0

package/curated/writing/README.md

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+# Curated Writing Resources
+
+> Hand-picked resources for academic researchers working on composition, polishing, formatting, and citation management.
+
+## Composition
+
+### Writing Guides
+- **[Writing Your Journal Article in Twelve Weeks (Belcher)](https://www.uchicago.edu/research/)** — Step-by-step workbook for turning a draft into a publishable paper; widely used in writing groups.
+- **[The Craft of Research (Booth, Colomb, Williams)](https://press.uchicago.edu/ucp/books/book/chicago/C/bo23521678.html)** — Classic guide to planning, drafting, and revising research writing.
+- **[How to Write a Great Research Paper (Simon Peyton Jones)](https://www.microsoft.com/en-us/research/academic-program/write-great-research-paper/)** — Concise advice from an experienced CS researcher; accompanying video talk is essential viewing.
+- **[Explorations of Style (blog)](https://explorationsofstyle.com/)** — Rachael Cayley's blog on graduate-level academic writing; practical and discipline-agnostic.
+
+### Structure Templates
+- **[IMRaD Structure Guide (NCBI)](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC442179/)** — Standard Introduction-Methods-Results-Discussion structure explained for biomedical papers.
+- **[Heilmeier Catechism](https://www.darpa.mil/about/heilmeier-catechism)** — DARPA's framework for articulating research goals; excellent for proposal introductions.
+
+## Polish
+
+### Tools & Software
+- **[Grammarly](https://www.grammarly.com/)** — AI writing assistant for grammar, clarity, tone, and plagiarism detection.
+- **[Writefull](https://www.writefull.com/)** — Language feedback tool trained specifically on published academic text; integrates with Overleaf and Word.
+- **[LanguageTool](https://languagetool.org/)** — Open-source grammar checker supporting 30+ languages; self-hostable.
+- **[Hemingway Editor](https://hemingwayapp.com/)** — Highlights complex sentences, passive voice, and readability issues; forces concision.
+
+### Style Guides
+- **[APA Style (7th ed.)](https://apastyle.apa.org/)** — Official APA manual; standard for social sciences, education, and psychology.
+- **[Chicago Manual of Style](https://www.chicagomanualofstyle.org/)** — Comprehensive guide for humanities writing and publishing.
+- **[IEEE Editorial Style Manual](https://journals.ieeeauthorcenter.ieee.org/your-role-in-article-production/ieee-editorial-style-manual/)** — Required style reference for all IEEE publications.
+
+## LaTeX
+
+### Editors & Environments
+- **[Overleaf](https://www.overleaf.com/)** — Collaborative online LaTeX editor; 1-click submission to journals; free tier available.
+- **[TeXstudio](https://www.texstudio.org/)** — Feature-rich open-source desktop LaTeX editor with inline preview.
+- **[Typst](https://typst.app/)** — Modern typesetting system designed as a simpler alternative to LaTeX; growing fast.
+
+### Packages & References
+- **[CTAN](https://ctan.org/)** — Comprehensive TeX Archive Network; the canonical package repository.
+- **[LaTeX Wikibook](https://en.wikibooks.org/wiki/LaTeX)** — Community-maintained, beginner-friendly LaTeX reference.
+- **[TikZ/PGF Manual](https://tikz.dev/)** — The standard for programmatic figure drawing in LaTeX.
+
+## Templates
+
+### Journal & Conference Templates
+- **[Overleaf Templates Gallery](https://www.overleaf.com/latex/templates)** — Thousands of publisher-official and community LaTeX templates.
+- **[IEEE Template Selector](https://template-selector.ieee.org/)** — Official tool to find the correct IEEE template for your target publication.
+- **[Springer LaTeX Templates](https://www.springer.com/gp/authors-editors/book-authors-editors/your-publication-journey/manuscript-preparation)** — Official Springer Nature templates for books and journals.
+- **[Elsevier LaTeX Templates](https://www.elsevier.com/researcher/author/policies-and-guidelines/latex-instructions)** — elsarticle class and documentation for all Elsevier journals.
+
+## Citation Management
+
+### Reference Managers
+- **[Zotero](https://www.zotero.org/)** — Free, open-source reference manager with browser connector, PDF annotation, and Word/LibreOffice plugins.
+- **[Paperpile](https://paperpile.com/)** — Fast, clean reference manager with tight Google Docs and Overleaf integration.
+- **[Mendeley](https://www.mendeley.com/)** — Free reference manager and academic social network by Elsevier; good PDF reader.
+- **[JabRef](https://www.jabref.org/)** — Open-source BibTeX/BibLaTeX manager; ideal for LaTeX-centric workflows.
+
+### Format & Conversion Tools
+- **[Citation Style Language (CSL)](https://citationstyles.org/)** — Open repository of 10,000+ citation styles used by Zotero, Mendeley, and Pandoc.
+- **[doi2bib](https://www.doi2bib.org/)** — Paste a DOI, get a BibTeX entry instantly.
+- **[AnyStyle](https://anystyle.io/)** — AI-powered parser that extracts structured references from plain-text bibliographies.

package/index.ts

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+import type { OpenClawPluginApi } from "openclaw/plugin-sdk";
+import { createSemanticScholarTools } from "./src/tools/semantic-scholar.js";
+import { createOpenAlexTools } from "./src/tools/openalex.js";
+import { createCrossRefTools } from "./src/tools/crossref.js";
+import { createArxivTools } from "./src/tools/arxiv.js";
+import { createPubMedTools } from "./src/tools/pubmed.js";
+import { createUnpaywallTools } from "./src/tools/unpaywall.js";
+
+export default function activate(api: OpenClawPluginApi) {
+  api.registerTool(
+    (ctx) => createSemanticScholarTools(ctx, api),
+    { names: ["search_papers", "get_paper", "get_citations"] },
+  );
+
+  api.registerTool(
+    (ctx) => createOpenAlexTools(ctx, api),
+    { names: ["search_openalex", "get_work", "get_author_openalex"] },
+  );
+
+  api.registerTool(
+    (ctx) => createCrossRefTools(ctx, api),
+    { names: ["resolve_doi", "search_crossref"] },
+  );
+
+  api.registerTool(
+    (ctx) => createArxivTools(ctx, api),
+    { names: ["search_arxiv", "get_arxiv_paper"] },
+  );
+
+  api.registerTool(
+    (ctx) => createPubMedTools(ctx, api),
+    { names: ["search_pubmed", "get_article"] },
+  );
+
+  api.registerTool(
+    (ctx) => createUnpaywallTools(ctx, api),
+    { names: ["find_oa_version"] },
+  );
+}

package/mcp-configs/academic-db/ChatSpatial.json

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+{
+  "id": "ChatSpatial",
+  "name": "ChatSpatial",
+  "description": "Spatial transcriptomics analysis via natural language",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "ChatSpatial",
+    "command": "pip install ChatSpatial"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["load_data", "identify_domains", "visualize"],
+  "verified": false,
+  "source": "https://github.com/cafferychen777/ChatSpatial"
+}

package/mcp-configs/academic-db/academia-mcp.json

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+{
+  "id": "academia-mcp",
+  "name": "Academia MCP",
+  "description": "Tools for automatic scientific research",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "academia-mcp",
+    "command": "pip install academia-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search", "analyze"],
+  "verified": false,
+  "source": "https://github.com/IlyaGusev/academia_mcp"
+}

package/mcp-configs/academic-db/academic-paper-explorer.json

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+{
+  "id": "academic-paper-explorer",
+  "name": "Academic Paper Explorer",
+  "description": "Academic paper discovery via arXiv and Semantic Scholar",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "academic-paper-explorer",
+    "command": "npm install -g academic-paper-explorer"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search", "read_paper", "find_code"],
+  "verified": false,
+  "source": "https://github.com/Leonard013/academic-paper-explorer"
+}

package/mcp-configs/academic-db/academic-search-mcp-server.json

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+{
+  "id": "academic-search-mcp-server",
+  "name": "Academic Paper Search",
+  "description": "Academic Paper Search MCP for Semantic Scholar and Crossref APIs",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "academic-search-mcp-server",
+    "command": "pip install academic-search-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_papers", "fetch_paper_details", "search_by_topic"],
+  "verified": false,
+  "source": "https://github.com/afrise/academic-search-mcp-server"
+}

package/mcp-configs/academic-db/agentinterviews-mcp.json

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+{
+  "id": "agentinterviews-mcp",
+  "name": "Agent Interviews",
+  "description": "AI-powered qualitative research interviews at scale",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "agentinterviews-mcp",
+    "command": "pip install agentinterviews-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["create_interviewer", "manage_project", "analyze_data"],
+  "verified": false,
+  "source": "https://github.com/thinkchainai/agentinterviews_mcp"
+}

package/mcp-configs/academic-db/all-in-mcp.json

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+{
+  "id": "all-in-mcp",
+  "name": "All-in MCP",
+  "description": "Academic paper search and PDF processing",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "all-in-mcp",
+    "command": "pip install all-in-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search", "process_pdf"],
+  "verified": false,
+  "source": "https://github.com/isomoes/all-in-mcp"
+}

package/mcp-configs/academic-db/apple-health-mcp.json

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+{
+  "id": "apple-health-mcp",
+  "name": "Apple Health Data",
+  "description": "Access exported Apple Health data with analytics",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "apple-health-mcp-server",
+    "command": "pip install apple-health-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["read_health_data", "analyze_trends", "export_data"],
+  "verified": false,
+  "source": "https://github.com/the-momentum/apple-health-mcp-server"
+}

package/mcp-configs/academic-db/arxiv-latex-mcp.json

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+{
+  "id": "arxiv-latex-mcp",
+  "name": "arXiv LaTeX Source",
+  "description": "Access arXiv papers via LaTeX source for better math handling",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "arxiv-latex-mcp",
+    "command": "pip install arxiv-latex-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["get_paper_prompt", "get_paper_abstract", "list_paper_sections", "get_paper_section"],
+  "verified": false,
+  "source": "https://github.com/takashiishida/arxiv-latex-mcp"
+}

package/mcp-configs/academic-db/arxiv-mcp-server.json

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+{
+  "id": "arxiv-mcp-server",
+  "name": "arXiv Search",
+  "description": "Search ArXiv research papers",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "arxiv-mcp-server",
+    "command": "pip install arxiv-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_arxiv"],
+  "verified": false,
+  "source": "https://github.com/blazickjp/arxiv-mcp-server"
+}

package/mcp-configs/academic-db/bgpt-mcp.json

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+{
+  "id": "bgpt-mcp",
+  "name": "BGPT Paper Search",
+  "description": "Search paper data from any AI tool",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "bgpt-mcp",
+    "command": "npm install -g bgpt-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_papers"],
+  "verified": false,
+  "source": "https://github.com/connerlambden/bgpt-mcp"
+}

package/mcp-configs/academic-db/biomcp.json

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+{
+  "id": "biomcp",
+  "name": "BioMCP",
+  "description": "Biomedical research MCP for PubMed, ClinicalTrials, and MyVariant",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "biomcp",
+    "command": "pip install biomcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_pubmed", "search_clinical_trials", "search_variants"],
+  "verified": false,
+  "source": "https://github.com/genomoncology/biomcp"
+}

package/mcp-configs/academic-db/biothings-mcp.json

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+{
+  "id": "biothings-mcp",
+  "name": "BioThings API",
+  "description": "BioThings API for genes, variants, drugs, and taxonomy",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "biothings-mcp",
+    "command": "pip install biothings-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["gene_query", "variant_query", "drug_query"],
+  "verified": false,
+  "source": "https://github.com/longevity-genie/biothings-mcp"
+}

package/mcp-configs/academic-db/catalysishub-mcp-server.json

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+{
+  "id": "catalysishub-mcp-server",
+  "name": "Catalysis Hub",
+  "description": "Search Catalysis Hub database for computational catalysis",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "catalysishub-mcp-server",
+    "command": "pip install catalysishub-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_reactions", "get_surface_data"],
+  "verified": false,
+  "source": "https://github.com/QuentinCody/catalysishub-mcp-server"
+}

package/mcp-configs/academic-db/clinicaltrialsgov-mcp-server.json

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+{
+  "id": "clinicaltrialsgov-mcp-server",
+  "name": "ClinicalTrials.gov",
+  "description": "ClinicalTrials.gov v2 API search and analysis",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "clinicaltrialsgov-mcp-server",
+    "command": "npm install -g clinicaltrialsgov-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_studies", "get_study", "analyze_trends", "compare_studies", "find_eligible_studies"],
+  "verified": false,
+  "source": "https://github.com/cyanheads/clinicaltrialsgov-mcp-server"
+}

package/mcp-configs/academic-db/deep-research-mcp.json

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+{
+  "id": "deep-research-mcp",
+  "name": "Deep Research",
+  "description": "Deep research via OpenAI or open models",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "deep-research-mcp",
+    "command": "pip install deep-research-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["conduct_research", "analyze_sources", "generate_report"],
+  "verified": false,
+  "source": "https://github.com/pminervini/deep-research-mcp"
+}

package/mcp-configs/academic-db/dicom-mcp.json

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+{
+  "id": "dicom-mcp",
+  "name": "DICOM Medical Imaging",
+  "description": "DICOM integration for medical imaging",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "dicom-mcp",
+    "command": "pip install dicom-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["query_studies", "get_images", "move_images"],
+  "verified": false,
+  "source": "https://github.com/ChristianHinge/dicom-mcp"
+}

package/mcp-configs/academic-db/enrichr-mcp-server.json

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+{
+  "id": "enrichr-mcp-server",
+  "name": "Enrichr Gene Set Analysis",
+  "description": "Gene set enrichment analysis using Enrichr API",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "enrichr-mcp-server",
+    "command": "npm install -g enrichr-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["enrichr_analysis", "go_bp_enrichment"],
+  "verified": false,
+  "source": "https://github.com/tianqitang1/enrichr-mcp-server"
+}

package/mcp-configs/academic-db/fec-mcp-server.json

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+{
+  "id": "fec-mcp-server",
+  "name": "FEC Campaign Finance",
+  "description": "Query FEC campaign finance data",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "fec-mcp-server",
+    "command": "npm install -g fec-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_candidates", "track_donations"],
+  "verified": false,
+  "source": "https://github.com/sh-patterson/fec-mcp-server"
+}

package/mcp-configs/academic-db/fhir-mcp-server-themomentum.json

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+{
+  "id": "fhir-mcp-server-themomentum",
+  "name": "FHIR Patient History",
+  "description": "FHIR server for patient history queries",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "fhir-mcp-server",
+    "command": "pip install fhir-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["query_patient", "search_resources", "get_history"],
+  "verified": false,
+  "source": "https://github.com/the-momentum/fhir-mcp-server"
+}

package/mcp-configs/academic-db/fhir-mcp.json

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+{
+  "id": "fhir-mcp",
+  "name": "FHIR Healthcare API",
+  "description": "FHIR API for healthcare data interoperability",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "fhir-mcp-server",
+    "command": "pip install fhir-mcp-server"
+  },
+  "config": {
+    "env": {
+      "FHIR_SERVER_URL": ""
+    }
+  },
+  "tools": ["search_patients", "get_patient_history", "create_observation"],
+  "verified": false,
+  "source": "https://github.com/wso2/fhir-mcp-server"
+}

package/mcp-configs/academic-db/gget-mcp.json

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+{
+  "id": "gget-mcp",
+  "name": "gget Bioinformatics",
+  "description": "Bioinformatics toolkit for genomics queries",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "gget-mcp",
+    "command": "pip install gget-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["gget_search", "gget_info", "gget_seq", "gget_blast"],
+  "verified": false,
+  "source": "https://github.com/longevity-genie/gget-mcp"
+}

package/mcp-configs/academic-db/google-researcher-mcp.json

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+{
+  "id": "google-researcher-mcp",
+  "name": "Google Researcher",
+  "description": "Comprehensive research tools for web, academic, patents",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "google-researcher-mcp",
+    "command": "pip install google-researcher-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_web", "search_papers", "search_patents"],
+  "verified": false,
+  "source": "https://github.com/zoharbabin/google-researcher-mcp"
+}

package/mcp-configs/academic-db/idea-reality-mcp.json

@@ -0,0 +1,17 @@
+{
+  "id": "idea-reality-mcp",
+  "name": "Idea Reality Check",
+  "description": "Pre-build reality check detecting existing competition",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "idea-reality-mcp",
+    "command": "pip install idea-reality-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["scan_github", "check_npm", "get_reality_score"],
+  "verified": false,
+  "source": "https://github.com/mnemox-ai/idea-reality-mcp"
+}

package/mcp-configs/academic-db/legiscan-mcp.json

@@ -0,0 +1,19 @@
+{
+  "id": "legiscan-mcp",
+  "name": "LegiScan",
+  "description": "Access legislative data from 50 US states",
+  "category": "academic-db",
+  "install": {
+    "runtime": "node",
+    "package": "legiscan-mcp",
+    "command": "npm install -g legiscan-mcp"
+  },
+  "config": {
+    "env": {
+      "LEGISCAN_API_KEY": ""
+    }
+  },
+  "tools": ["search_bills", "get_text", "track_votes"],
+  "verified": false,
+  "source": "https://github.com/sh-patterson/legiscan-mcp"
+}

package/mcp-configs/academic-db/lex.json

@@ -0,0 +1,17 @@
+{
+  "id": "lex",
+  "name": "Lex UK Legal API",
+  "description": "UK legal API for AI agents and researchers",
+  "category": "academic-db",
+  "install": {
+    "runtime": "python",
+    "package": "lex",
+    "command": "pip install lex"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["search_legislation"],
+  "verified": false,
+  "source": "https://github.com/i-dot-ai/lex"
+}

package/mcp-configs/ai-platform/Adaptive-Graph-of-Thoughts-MCP-server.json

@@ -0,0 +1,17 @@
+{
+  "id": "Adaptive-Graph-of-Thoughts-MCP-server",
+  "name": "Adaptive Graph of Thoughts MCP Server",
+  "description": "LLM reasoning framework for scientific research using adaptive graph-of-thoughts",
+  "category": "ai-platform",
+  "install": {
+    "runtime": "python",
+    "package": "adaptive-graph-of-thoughts-mcp-server",
+    "command": "pip install adaptive-graph-of-thoughts-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["reason", "analyze"],
+  "verified": false,
+  "source": "https://github.com/SaptaDey/Adaptive-Graph-of-Thoughts-MCP-server"
+}

package/mcp-configs/ai-platform/ai-counsel.json

@@ -0,0 +1,17 @@
+{
+  "id": "ai-counsel",
+  "name": "AI Counsel",
+  "description": "Multi-round debate between AI models for reaching consensus on complex questions",
+  "category": "ai-platform",
+  "install": {
+    "runtime": "python",
+    "package": "ai-counsel",
+    "command": "pip install ai-counsel"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["debate", "vote", "converge"],
+  "verified": false,
+  "source": "https://github.com/harrison/ai-counsel"
+}

package/mcp-configs/ai-platform/atlas-mcp-server.json

@@ -0,0 +1,17 @@
+{
+  "id": "atlas-mcp-server",
+  "name": "Atlas MCP Server",
+  "description": "Neo4j-powered task management with deep research capabilities for complex projects",
+  "category": "ai-platform",
+  "install": {
+    "runtime": "node",
+    "package": "atlas-mcp-server",
+    "command": "npx atlas-mcp-server"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["create_project", "manage_tasks", "deep_research"],
+  "verified": false,
+  "source": "https://github.com/cyanheads/atlas-mcp-server"
+}

package/mcp-configs/ai-platform/counsel-mcp.json

@@ -0,0 +1,17 @@
+{
+  "id": "counsel-mcp",
+  "name": "Counsel MCP",
+  "description": "Strategic reasoning and multi-perspective analysis for complex decision-making",
+  "category": "ai-platform",
+  "install": {
+    "runtime": "node",
+    "package": "counsel-mcp",
+    "command": "npx counsel-mcp"
+  },
+  "config": {
+    "env": {}
+  },
+  "tools": ["debate", "analyze", "advise"],
+  "verified": false,
+  "source": "https://github.com/mercurialsolo/counsel-mcp"
+}