@vitessce/vit-s 2.0.2 → 2.0.3

package/dist/view-config-utils.test.fixtures.js

@@ -1,765 +0,0 @@
-/* eslint-disable camelcase */
-export const legacyViewConfig0_1_0 = {
-    version: '0.1.0',
-    public: true,
-    name: 'My config name',
-    description: 'My config description',
-    layers: [{
-            name: 'cells',
-            type: 'CELLS',
-            fileType: 'cells.json',
-            url: 'https://example.com/cells.json',
-        }, {
-            name: 'cell-sets',
-            type: 'CELL-SETS',
-            fileType: 'cell-sets.json',
-            url: 'https://example.com/cell-sets.json',
-        }],
-    staticLayout: [{
-            component: 'description',
-            props: {
-                description: 'My component description',
-            },
-            x: 9,
-            y: 0,
-            w: 3,
-            h: 2,
-        }, {
-            component: 'scatterplot',
-            props: {
-                mapping: 't-SNE',
-                view: {
-                    zoom: 3,
-                    target: [0, 0, 0],
-                },
-            },
-            x: 0,
-            y: 2,
-            w: 5,
-            h: 4,
-        }, {
-            component: 'spatial',
-            props: {
-                cellRadius: 50,
-                view: {
-                    zoom: -4.4,
-                    target: [3800, -900, 0],
-                },
-            },
-            x: 5,
-            y: 0,
-            w: 4,
-            h: 4,
-        }],
-};
-export const upgradedLegacyViewConfig0_1_0 = {
-    version: '1.0.1',
-    public: true,
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        embeddingTargetX: {
-            A: 0,
-        },
-        embeddingTargetY: {
-            A: 0,
-        },
-        embeddingType: {
-            't-SNE': 't-SNE',
-        },
-        embeddingZoom: {
-            A: 3,
-        },
-        spatialTargetX: {
-            A: 3800,
-        },
-        spatialTargetY: {
-            A: -900,
-        },
-        spatialZoom: {
-            A: -4.4,
-        },
-    },
-    datasets: [
-        {
-            files: [
-                {
-                    fileType: 'cells.json',
-                    type: 'cells',
-                    url: 'https://example.com/cells.json',
-                },
-                {
-                    fileType: 'cell-sets.json',
-                    type: 'cell-sets',
-                    url: 'https://example.com/cell-sets.json',
-                },
-            ],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {},
-            h: 2,
-            props: {
-                description: 'My component description',
-            },
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'scatterplot',
-            coordinationScopes: {
-                embeddingTargetX: 'A',
-                embeddingTargetY: 'A',
-                embeddingType: 't-SNE',
-                embeddingZoom: 'A',
-            },
-            h: 4,
-            props: {
-                mapping: 't-SNE',
-                view: {
-                    target: [
-                        0,
-                        0,
-                        0,
-                    ],
-                    zoom: 3,
-                },
-            },
-            w: 5,
-            x: 0,
-            y: 2,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                spatialTargetX: 'A',
-                spatialTargetY: 'A',
-                spatialZoom: 'A',
-            },
-            h: 4,
-            props: {
-                cellRadius: 50,
-                view: {
-                    target: [
-                        3800,
-                        -900,
-                        0,
-                    ],
-                    zoom: -4.4,
-                },
-            },
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};
-export const legacyViewConfig1_0_0 = {
-    version: '1.0.0',
-    public: true,
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        dataset: {
-            A: 'A',
-        },
-        spatialLayers: {
-            A: [
-                { type: 'cells', radius: 10, visible: true },
-                { type: 'molecules', visible: false },
-                { type: 'raster', index: 2 },
-                { type: 'raster', index: 3 },
-            ],
-        },
-    },
-    datasets: [
-        {
-            files: [],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {
-                dataset: 'A',
-                spatialLayers: 'A',
-            },
-            h: 2,
-            props: {
-                description: 'My component description',
-            },
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                dataset: 'A',
-                spatialLayers: 'A',
-            },
-            h: 4,
-            props: {
-                cellRadius: 50,
-                view: {
-                    target: [
-                        3800,
-                        -900,
-                        0,
-                    ],
-                    zoom: -4.4,
-                },
-            },
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};
-export const upgradedLegacyViewConfig1_0_0 = {
-    version: '1.0.1',
-    public: true,
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        dataset: {
-            A: 'A',
-        },
-        spatialRasterLayers: {
-            A: [
-                { index: 2 },
-                { index: 3 },
-            ],
-        },
-        spatialCellsLayer: {
-            A: { radius: 10, visible: true },
-        },
-        spatialMoleculesLayer: {
-            A: { visible: false },
-        },
-        spatialNeighborhoodsLayer: {
-            A: null,
-        },
-    },
-    datasets: [
-        {
-            files: [],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {
-                dataset: 'A',
-                spatialRasterLayers: 'A',
-            },
-            h: 2,
-            props: {
-                description: 'My component description',
-            },
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                dataset: 'A',
-                spatialRasterLayers: 'A',
-                spatialCellsLayer: 'A',
-                spatialMoleculesLayer: 'A',
-                spatialNeighborhoodsLayer: 'A',
-            },
-            h: 4,
-            props: {
-                cellRadius: 50,
-                view: {
-                    target: [
-                        3800,
-                        -900,
-                        0,
-                    ],
-                    zoom: -4.4,
-                },
-            },
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};
-export const missingViewUids = {
-    version: '1.0.9',
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        dataset: {
-            A: 'A',
-        },
-    },
-    datasets: [
-        {
-            files: [],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {
-                dataset: 'A',
-            },
-            h: 2,
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'scatterplot',
-            uid: 'some-umap',
-            coordinationScopes: {
-                dataset: 'A',
-            },
-            h: 4,
-            w: 5,
-            x: 0,
-            y: 2,
-        },
-        {
-            component: 'scatterplot',
-            coordinationScopes: {
-                dataset: 'A',
-            },
-            h: 4,
-            w: 5,
-            x: 0,
-            y: 2,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                dataset: 'A',
-            },
-            h: 4,
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};
-export const viewConfig1_0_10 = {
-    version: '1.0.10',
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        embeddingTargetX: {
-            A: 0,
-        },
-        embeddingTargetY: {
-            A: 0,
-        },
-        embeddingType: {
-            't-SNE': 't-SNE',
-        },
-        embeddingZoom: {
-            A: 3,
-        },
-        spatialTargetX: {
-            A: 3800,
-        },
-        spatialTargetY: {
-            A: -900,
-        },
-        spatialZoom: {
-            A: -4.4,
-        },
-    },
-    datasets: [
-        {
-            files: [
-                {
-                    fileType: 'cells.json',
-                    type: 'cells',
-                    url: 'https://example.com/cells.json',
-                },
-                {
-                    fileType: 'cell-sets.json',
-                    type: 'cell-sets',
-                    url: 'https://example.com/cell-sets.json',
-                },
-            ],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {},
-            h: 2,
-            props: {
-                description: 'My component description',
-            },
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'scatterplot',
-            coordinationScopes: {
-                embeddingTargetX: 'A',
-                embeddingTargetY: 'A',
-                embeddingType: 't-SNE',
-                embeddingZoom: 'A',
-            },
-            h: 4,
-            props: {
-                mapping: 't-SNE',
-                view: {
-                    target: [
-                        0,
-                        0,
-                        0,
-                    ],
-                    zoom: 3,
-                },
-            },
-            w: 5,
-            x: 0,
-            y: 2,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                spatialTargetX: 'A',
-                spatialTargetY: 'A',
-                spatialZoom: 'A',
-            },
-            h: 4,
-            props: {
-                cellRadius: 50,
-                view: {
-                    target: [
-                        3800,
-                        -900,
-                        0,
-                    ],
-                    zoom: -4.4,
-                },
-            },
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};
-export const initializedViewConfig = {
-    version: '1.0.10',
-    name: 'My config name',
-    description: 'My config description',
-    initStrategy: 'auto',
-    coordinationSpace: {
-        obsType: {
-            A: 'cell',
-        },
-        featureType: {
-            A: 'gene',
-        },
-        featureValueType: {
-            A: 'expression',
-        },
-        obsColorEncoding: {
-            A: 'cellSetSelection',
-        },
-        obsFilter: {
-            A: null,
-        },
-        obsHighlight: {
-            A: null,
-        },
-        obsSetHighlight: {
-            A: null,
-        },
-        obsSetSelection: {
-            A: null,
-        },
-        dataset: {
-            A: 'A',
-        },
-        embeddingObsOpacity: {
-            A: 1,
-        },
-        embeddingObsOpacityMode: {
-            A: 'auto',
-        },
-        embeddingObsRadius: {
-            A: 1,
-        },
-        embeddingObsRadiusMode: {
-            A: 'auto',
-        },
-        embeddingRotation: {
-            A: 0,
-        },
-        embeddingTargetX: {
-            A: 0,
-        },
-        embeddingTargetY: {
-            A: 0,
-        },
-        embeddingTargetZ: {
-            A: 0,
-        },
-        embeddingType: {
-            't-SNE': 't-SNE',
-        },
-        embeddingZoom: {
-            A: 3,
-        },
-        embeddingObsSetLabelSize: {
-            A: 14,
-        },
-        embeddingObsSetLabelsVisible: {
-            A: false,
-        },
-        embeddingObsSetPolygonsVisible: {
-            A: false,
-        },
-        featureValueColormap: {
-            A: 'plasma',
-        },
-        featureValueColormapRange: {
-            A: [
-                0,
-                1,
-            ],
-        },
-        featureHighlight: {
-            A: null,
-        },
-        featureSelection: {
-            A: null,
-        },
-        spatialImageLayer: {
-            A: null,
-        },
-        spatialSegmentationLayer: {
-            A: null,
-        },
-        spatialPointLayer: {
-            A: null,
-        },
-        spatialNeighborhoodLayer: {
-            A: null,
-        },
-        spatialRotation: {
-            A: 0,
-        },
-        spatialRotationOrbit: {
-            A: 0,
-        },
-        spatialOrbitAxis: {
-            A: 'Y',
-        },
-        spatialRotationX: {
-            A: null,
-        },
-        spatialRotationY: {
-            A: null,
-        },
-        spatialRotationZ: {
-            A: null,
-        },
-        spatialTargetX: {
-            A: 3800,
-        },
-        spatialTargetY: {
-            A: -900,
-        },
-        spatialTargetZ: {
-            A: null,
-        },
-        spatialZoom: {
-            A: -4.4,
-        },
-        spatialAxisFixed: {
-            A: false,
-        },
-        additionalObsSets: {
-            A: null,
-        },
-        obsSetColor: {
-            A: null,
-        },
-        obsLabelsType: {
-            A: null,
-        },
-        moleculeHighlight: {
-            A: null,
-        },
-    },
-    datasets: [
-        {
-            files: [
-                {
-                    fileType: 'obsSegmentations.cells.json',
-                    url: 'https://example.com/cells.json',
-                    coordinationValues: {
-                        obsType: 'cell',
-                    },
-                },
-                {
-                    fileType: 'obsLocations.cells.json',
-                    url: 'https://example.com/cells.json',
-                    coordinationValues: {
-                        obsType: 'cell',
-                    },
-                },
-                {
-                    fileType: 'obsSets.cell-sets.json',
-                    url: 'https://example.com/cell-sets.json',
-                    coordinationValues: {
-                        obsType: 'cell',
-                    },
-                },
-            ],
-            name: 'A',
-            uid: 'A',
-        },
-    ],
-    layout: [
-        {
-            component: 'description',
-            coordinationScopes: {
-                dataset: 'A',
-                spatialImageLayer: 'A',
-            },
-            h: 2,
-            props: {
-                description: 'My component description',
-            },
-            uid: 'A',
-            w: 3,
-            x: 9,
-            y: 0,
-        },
-        {
-            component: 'scatterplot',
-            coordinationScopes: {
-                obsType: 'A',
-                obsLabelsType: 'A',
-                featureType: 'A',
-                featureValueType: 'A',
-                obsColorEncoding: 'A',
-                obsFilter: 'A',
-                obsHighlight: 'A',
-                obsSetHighlight: 'A',
-                obsSetSelection: 'A',
-                obsSetColor: 'A',
-                dataset: 'A',
-                embeddingObsOpacity: 'A',
-                embeddingObsOpacityMode: 'A',
-                embeddingObsRadius: 'A',
-                embeddingObsRadiusMode: 'A',
-                embeddingRotation: 'A',
-                embeddingTargetX: 'A',
-                embeddingTargetY: 'A',
-                embeddingTargetZ: 'A',
-                embeddingType: 't-SNE',
-                embeddingZoom: 'A',
-                embeddingObsSetLabelSize: 'A',
-                embeddingObsSetLabelsVisible: 'A',
-                embeddingObsSetPolygonsVisible: 'A',
-                featureValueColormap: 'A',
-                featureValueColormapRange: 'A',
-                featureHighlight: 'A',
-                featureSelection: 'A',
-                additionalObsSets: 'A',
-            },
-            h: 4,
-            props: {
-                mapping: 't-SNE',
-                view: {
-                    target: [
-                        0,
-                        0,
-                        0,
-                    ],
-                    zoom: 3,
-                },
-            },
-            uid: 'B',
-            w: 5,
-            x: 0,
-            y: 2,
-        },
-        {
-            component: 'spatial',
-            coordinationScopes: {
-                obsType: 'A',
-                obsLabelsType: 'A',
-                obsColorEncoding: 'A',
-                obsFilter: 'A',
-                obsHighlight: 'A',
-                obsSetHighlight: 'A',
-                obsSetSelection: 'A',
-                obsSetColor: 'A',
-                dataset: 'A',
-                featureValueColormap: 'A',
-                featureValueColormapRange: 'A',
-                featureValueType: 'A',
-                featureHighlight: 'A',
-                featureSelection: 'A',
-                featureType: 'A',
-                spatialImageLayer: 'A',
-                spatialSegmentationLayer: 'A',
-                spatialPointLayer: 'A',
-                spatialNeighborhoodLayer: 'A',
-                spatialRotation: 'A',
-                spatialRotationOrbit: 'A',
-                spatialOrbitAxis: 'A',
-                spatialRotationX: 'A',
-                spatialRotationY: 'A',
-                spatialRotationZ: 'A',
-                spatialTargetX: 'A',
-                spatialTargetY: 'A',
-                spatialTargetZ: 'A',
-                spatialAxisFixed: 'A',
-                spatialZoom: 'A',
-                additionalObsSets: 'A',
-                moleculeHighlight: 'A',
-            },
-            h: 4,
-            props: {
-                cellRadius: 50,
-                view: {
-                    target: [
-                        3800,
-                        -900,
-                        0,
-                    ],
-                    zoom: -4.4,
-                },
-            },
-            uid: 'C',
-            w: 4,
-            x: 5,
-            y: 0,
-        },
-    ],
-};