@vitessce/vit-s 2.0.2 → 2.0.3

package/dist/shared-plot-options/CellColorEncodingOption.js

@@ -1,18 +0,0 @@
-import { jsxs as _jsxs, jsx as _jsx } from "react/jsx-runtime";
-import React from 'react';
-import TableCell from '@material-ui/core/TableCell';
-import TableRow from '@material-ui/core/TableRow';
-import { capitalize } from '@vitessce/utils';
-import OptionSelect from './OptionSelect';
-import { useStyles } from './styles';
-export default function CellColorEncodingOption(props) {
-    const { observationsLabel, cellColorEncoding, setCellColorEncoding, } = props;
-    const classes = useStyles();
-    const observationsLabelNice = capitalize(observationsLabel);
-    function handleColorEncodingChange(event) {
-        setCellColorEncoding(event.target.value);
-    }
-    return (_jsxs(TableRow, { children: [_jsxs(TableCell, { className: classes.labelCell, htmlFor: "cell-color-encoding-select", children: [observationsLabelNice, " Color Encoding"] }), _jsx(TableCell, { className: classes.inputCell, children: _jsxs(OptionSelect, { className: classes.select, value: cellColorEncoding, onChange: handleColorEncodingChange, inputProps: {
-                        id: 'cell-color-encoding-select',
-                    }, children: [_jsx("option", { value: "cellSetSelection", children: "Cell Sets" }), _jsx("option", { value: "geneSelection", children: "Gene Expression" })] }) })] }));
-}

package/dist/shared-plot-options/OptionSelect.js

@@ -1,12 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import React from 'react';
-import Select from '@material-ui/core/Select';
-import { useStyles } from './styles';
-export default function OptionSelect(props) {
-    const { classes: classesProp = {} } = props;
-    const classes = useStyles();
-    return (_jsx(Select, { native: true, disableUnderline: true, ...props, classes: {
-            root: classes.selectRoot,
-            ...classesProp,
-        } }));
-}

package/dist/shared-plot-options/OptionsContainer.js

@@ -1,12 +0,0 @@
-import { jsx as _jsx } from "react/jsx-runtime";
-import React from 'react';
-import Box from '@material-ui/core/Box';
-import Table from '@material-ui/core/Table';
-import TableBody from '@material-ui/core/TableBody';
-import TableContainer from '@material-ui/core/TableContainer';
-import { useStyles } from './styles';
-export default function OptionsContainer(props) {
-    const { children, } = props;
-    const classes = useStyles();
-    return (_jsx(Box, { className: classes.box, children: _jsx(TableContainer, { className: classes.tableContainer, children: _jsx(Table, { className: classes.table, size: "small", children: _jsx(TableBody, { children: children }) }) }) }));
-}

package/dist/shared-plot-options/styles.js

@@ -1,48 +0,0 @@
-import { makeStyles } from '@material-ui/core/styles';
-export const useStyles = makeStyles(theme => ({
-    box: {
-        boxSizing: 'border-box',
-    },
-    checkbox: {
-        padding: '3px',
-        color: theme.palette.primaryForeground,
-        '&:checked': {
-            color: theme.palette.primaryForeground,
-        },
-        '& input': {
-            height: '100%',
-        },
-    },
-    slider: {
-        color: theme.palette.primaryForeground,
-        minWidth: '60px',
-        padding: '10px 0 10px 0',
-    },
-    sliderValueLabel: {
-        '& span': {
-            '& span': {
-                color: theme.palette.primaryBackground,
-            },
-        },
-    },
-    tableContainer: {
-        overflow: 'hidden',
-        overflowX: 'hidden !important',
-    },
-    labelCell: {
-        padding: '2px 8px 2px 16px',
-    },
-    inputCell: {
-        padding: '2px 16px 2px 8px',
-        overflow: 'visible',
-    },
-    select: {
-        '& select': {
-            fontSize: '.875rem',
-        },
-    },
-    selectRoot: {
-        padding: 0,
-        height: 'auto',
-    },
-}));

package/dist/state/hooks.js

@@ -1,549 +0,0 @@
-import { useRef, useCallback, useMemo } from 'react';
-import create from 'zustand';
-import createContext from 'zustand/context';
-import shallow from 'zustand/shallow';
-import isMatch from 'lodash/isMatch';
-import { CoordinationType } from '@vitessce/constants-internal';
-import { fromEntries, capitalize } from '@vitessce/utils';
-// Reference: https://github.com/pmndrs/zustand#react-context
-// Reference: https://github.com/pmndrs/zustand/blob/e47ea03/tests/context.test.tsx#L60
-const { Provider: ViewConfigProviderLocal, useStore: useViewConfigStoreLocal, useStoreApi: useViewConfigStoreApiLocal, } = createContext();
-export const ViewConfigProvider = ViewConfigProviderLocal;
-export const useViewConfigStore = useViewConfigStoreLocal;
-export const useViewConfigStoreApi = useViewConfigStoreApiLocal;
-const { Provider: AuxiliaryProviderLocal, useStore: useAuxiliaryStoreLocal, } = createContext();
-export const AuxiliaryProvider = AuxiliaryProviderLocal;
-export const useAuxiliaryStore = useAuxiliaryStoreLocal;
-/**
- * The useViewConfigStore hook is initialized via the zustand
- * create() function, which sets up both the state variables
- * and the reducer-type functions.
- * Reference: https://github.com/react-spring/zustand
- * @returns {function} The useStore hook.
- */
-export const createViewConfigStore = () => create(set => ({
-    // State:
-    // The viewConfig is an object which must conform to the schema
-    // found in src/schemas/config.schema.json.
-    viewConfig: null,
-    // The loaders object is a mapping from dataset ID to
-    // data type to loader object instance.
-    loaders: null,
-    // Reducer functions which update the state
-    // (although technically also part of state):
-    setViewConfig: viewConfig => set({ viewConfig }),
-    setLoaders: loaders => set({ loaders }),
-    setCoordinationValue: ({ parameter, scope, value }) => set(state => ({
-        viewConfig: {
-            ...state.viewConfig,
-            coordinationSpace: {
-                ...state.viewConfig.coordinationSpace,
-                [parameter]: {
-                    ...state.viewConfig.coordinationSpace[parameter],
-                    [scope]: value,
-                },
-            },
-        },
-    })),
-    removeComponent: uid => set((state) => {
-        const newLayout = state.viewConfig.layout.filter(c => c.uid !== uid);
-        return {
-            viewConfig: {
-                ...state.viewConfig,
-                layout: newLayout,
-            },
-        };
-    }),
-    changeLayout: newComponentProps => set((state) => {
-        const newLayout = state.viewConfig.layout
-            .slice()
-            .map(componentProps => ({
-            ...componentProps,
-            ...newComponentProps[componentProps.uid],
-        }));
-        return {
-            viewConfig: {
-                ...state.viewConfig,
-                layout: newLayout,
-            },
-        };
-    }),
-}));
-/**
- * Hook for getting components' layout from the view config based on
- * matching all coordination scopes.
- * @returns {Object} The components' layout.
- */
-export const useComponentLayout = (component, scopes, coordinationScopes) => useViewConfigStore(state => state.viewConfig.layout.filter(l => l.component === component).filter(l => scopes.every(scope => l.coordinationScopes[scope]
-    === coordinationScopes[scope])));
-/**
- * The useAuxiliaryStore hook is initialized via the zustand
- * create() function, which sets up both the state variables
- * and the reducer-type functions.
- * Reference: https://github.com/react-spring/zustand
- * It is meant to be used for non-viewconfig-based coordination between components.
- * For example, as currently happens, the layer controller can coordinate
- * on-load callbacks with spatial view based on whether or not they are
- * coordinated via `spatialImageLayer` - the callbacks are not part of the view config
- * though so they live here.
- * @returns {function} The useStore hook.
- */
-export const createAuxiliaryStore = () => create(set => ({
-    auxiliaryStore: null,
-    setCoordinationValue: ({ parameter, scope, value }) => set(state => ({
-        auxiliaryStore: {
-            ...state.auxiliaryStore,
-            [parameter]: {
-                [scope]: value,
-            },
-        },
-    })),
-}));
-/**
- * The hover store can be used to store global state
- * related to which component is currently hovered,
- * which is required for tooltip / crossover elements.
- * @returns {function} The useStore hook.
- */
-const useHoverStore = create(set => ({
-    // Components may need to know if they are the "hover source"
-    // for tooltip interactions. This value should be a unique
-    // component ID, such as its index in the view config layout.
-    componentHover: null,
-    setComponentHover: componentHover => set({ componentHover }),
-}));
-/**
- * The warning store can be used to store global state
- * related to app warning messages.
- * @returns {function} The useStore hook.
- */
-const useWarnStore = create(set => ({
-    // Want a global state to collect warning messages
-    // that occur anywhere in the app.
-    warning: null,
-    setWarning: warning => set({ warning }),
-}));
-/**
- * The view info store can be used to store component-level
- * viewInfo objects,
- * which are required for tooltip / crossover elements.
- * @returns {function} The useStore hook.
- */
-const useViewInfoStore = create(set => ({
-    // The viewInfo object is a mapping from
-    // component IDs to component view info objects.
-    // Each view info object must have a project() function.
-    viewInfo: {},
-    setComponentViewInfo: (uuid, viewInfo) => set(state => ({
-        viewInfo: {
-            ...state.viewInfo,
-            [uuid]: viewInfo,
-        },
-    })),
-}));
-/**
- * The grid size store can be used to store a
- * counter which updates on each window or react-grid-layout
- * resize event.
- * @returns {function} The useStore hook.
- */
-const useGridSizeStore = create(set => ({
-    resizeCount: {},
-    incrementResizeCount: () => set(state => ({
-        resizeCount: state.resizeCount + 1,
-    })),
-}));
-/**
- * The useCoordination hook returns both the
- * values and setter functions for the coordination objects
- * in a particular coordination scope mapping.
- * This hook is intended to be used within the ___Subscriber
- * components to allow them to "hook into" only those coordination
- * objects and setter functions of relevance.
- * @param {string[]} parameters Array of coordination types.
- * @param {object} coordinationScopes Mapping of coordination types
- * to scope names.
- * @returns {array} Returns a tuple [values, setters]
- * where values is an object containing all coordination values,
- * and setters is an object containing all coordination setter
- * functions for the values in `values`, named with a "set"
- * prefix.
- */
-export function useCoordination(parameters, coordinationScopes) {
-    const setCoordinationValue = useViewConfigStore(state => state.setCoordinationValue);
-    const values = useViewConfigStore((state) => {
-        const { coordinationSpace } = state.viewConfig;
-        return fromEntries(parameters.map((parameter) => {
-            if (coordinationSpace && coordinationSpace[parameter]) {
-                const value = coordinationSpace[parameter][coordinationScopes[parameter]];
-                return [parameter, value];
-            }
-            return [parameter, undefined];
-        }));
-    }, shallow);
-    const setters = useMemo(() => fromEntries(parameters.map((parameter) => {
-        const setterName = `set${capitalize(parameter)}`;
-        const setterFunc = value => setCoordinationValue({
-            parameter,
-            scope: coordinationScopes[parameter],
-            value,
-        });
-        return [setterName, setterFunc];
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    })), [parameters, coordinationScopes]);
-    return [values, setters];
-}
-export function useMultiCoordinationValues(parameter, coordinationScopes) {
-    const scopes = coordinationScopes[parameter];
-    // Mapping from dataset coordination scope name to dataset uid
-    const vals = useViewConfigStore((state) => {
-        const { coordinationSpace } = state.viewConfig;
-        // Convert a single scope to an array of scopes to be consistent.
-        const scopesArr = Array.isArray(scopes) ? scopes : [scopes];
-        return fromEntries(scopesArr.map((scope) => {
-            if (coordinationSpace && coordinationSpace[parameter]) {
-                const value = coordinationSpace[parameter][scope];
-                return [scope, value];
-            }
-            return [scope, undefined];
-            // eslint-disable-next-line no-unused-vars
-        }).filter(([k, v]) => v !== undefined));
-    }, shallow);
-    return vals;
-}
-/**
- * Get a mapping from dataset coordination scopes to dataset UIDs.
- * @param {object} coordinationScopes The coordination scope mapping object for a view.
- * @returns {object} Mapping from dataset coordination scope names to dataset UIDs.
- */
-export function useDatasetUids(coordinationScopes) {
-    return useMultiCoordinationValues(CoordinationType.DATASET, coordinationScopes);
-}
-/**
- * Use coordination values and coordination setter functions corresponding to
- * dataset-specific coordination scopes for each coordination type.
- * @param {string[]} parameters An array of coordination types supported by a view.
- * @param {object} coordinationScopes The coordination scope mapping object for a view.
- * @returns {array} [cValues, cSetters] where
- * cValues is a mapping from coordination scope name to { coordinationType: coordinationValue },
- * and cSetters is a mapping from coordination scope name to { setCoordinationType }
- * setter functions.
- */
-export function useMultiDatasetCoordination(parameters, coordinationScopes) {
-    const setCoordinationValue = useViewConfigStore(state => state.setCoordinationValue);
-    const datasetScopes = coordinationScopes[CoordinationType.DATASET];
-    // Convert a single scope to an array of scopes to be consistent.
-    const datasetScopesArr = Array.isArray(datasetScopes) ? datasetScopes : [datasetScopes];
-    const values = useViewConfigStore((state) => {
-        const { coordinationSpace } = state.viewConfig;
-        return fromEntries(datasetScopesArr.map((datasetScope) => {
-            const datasetValues = fromEntries(parameters.map((parameter) => {
-                if (coordinationSpace && coordinationSpace[parameter]) {
-                    let value;
-                    const parameterSpace = coordinationSpace[parameter];
-                    const parameterScope = coordinationScopes[parameter];
-                    if (typeof parameterScope === 'object') {
-                        value = parameterSpace[parameterScope[datasetScope]];
-                    }
-                    else if (typeof parameterScope === 'string') {
-                        value = parameterSpace[parameterScope];
-                    }
-                    else {
-                        console.error(`coordination scope for ${parameter} must be of type string or object.`);
-                    }
-                    return [parameter, value];
-                }
-                return [parameter, undefined];
-            }));
-            return [datasetScope, datasetValues];
-        }));
-    }, shallow);
-    const setters = useMemo(() => fromEntries(datasetScopesArr.map((datasetScope) => {
-        const datasetSetters = fromEntries(parameters.map((parameter) => {
-            const setterName = `set${capitalize(parameter)}`;
-            let setterFunc;
-            const parameterScope = coordinationScopes[parameter];
-            if (typeof parameterScope === 'object') {
-                setterFunc = value => setCoordinationValue({
-                    parameter,
-                    scope: parameterScope[datasetScope],
-                    value,
-                });
-            }
-            else if (typeof parameterScope === 'string') {
-                setterFunc = value => setCoordinationValue({
-                    parameter,
-                    scope: parameterScope,
-                    value,
-                });
-            }
-            else {
-                console.error(`coordination scope for ${parameter} must be of type string or object.`);
-            }
-            return [setterName, setterFunc];
-        }));
-        return [datasetScope, datasetSetters];
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    })), [parameters, coordinationScopes]);
-    return [values, setters];
-}
-const AUXILIARY_COORDINATION_TYPES_MAP = {
-    spatialImageLayer: ['imageLayerCallbacks', 'areLoadingImageChannels'],
-    spatialSegmentationLayer: ['segmentationLayerCallbacks', 'areLoadingSegmentationChannels'],
-};
-/**
- * The maps the coordination types of incoming scopes to new types
- * for the auxiliary store.
- * @param {object} coordinationScopes Mapping of coordination types
- * to scope names.
- * @returns {object} Mapping of coordination types
- * to new scope names for the auxiliary store.
- */
-const mapCoordinationScopes = (coordinationScopes) => {
-    const newCoordinationScopes = {};
-    Object.keys(coordinationScopes).forEach((key) => {
-        const newCoordinationTypes = AUXILIARY_COORDINATION_TYPES_MAP[key] || [];
-        newCoordinationTypes.forEach((coordinationType) => {
-            newCoordinationScopes[coordinationType || key] = coordinationScopes[key];
-        });
-    });
-    return newCoordinationScopes;
-};
-const mapParameters = parameters => parameters
-    .map(parameter => AUXILIARY_COORDINATION_TYPES_MAP[parameter]).filter(Boolean).flat();
-/**
- * The useAuxiliaryCoordination hook returns both the
- * values and setter functions for the auxiliary coordination objects
- * in a particular coordination scope mapping.
- * This hook is intended to be used within the ___Subscriber
- * components to allow them to "hook into" only those auxiliary coordination
- * objects and setter functions of relevance, for example "on load" callbacks.
- * @param {string[]} parameters Array of coordination types.
- * @param {object} coordinationScopes Mapping of coordination types
- * to scope names.
- * @returns {array} Returns a tuple [values, setters]
- * where values is an object containing all coordination values,
- * and setters is an object containing all coordination setter
- * functions for the values in `values`, named with a "set"
- * prefix.
- */
-export function useAuxiliaryCoordination(parameters, coordinationScopes) {
-    const setCoordinationValue = useAuxiliaryStore(state => state.setCoordinationValue);
-    const mappedCoordinationScopes = mapCoordinationScopes(coordinationScopes);
-    const mappedParameters = mapParameters(parameters);
-    const values = useAuxiliaryStore((state) => {
-        const { auxiliaryStore } = state;
-        return fromEntries(mappedParameters.map((parameter) => {
-            if (auxiliaryStore && auxiliaryStore[parameter]) {
-                const value = auxiliaryStore[parameter][mappedCoordinationScopes[parameter]];
-                return [parameter, value];
-            }
-            return [parameter, undefined];
-        }));
-    }, shallow);
-    const setters = useMemo(() => fromEntries(mappedParameters.map((parameter) => {
-        const setterName = `set${capitalize(parameter)}`;
-        const setterFunc = value => setCoordinationValue({
-            parameter,
-            scope: mappedCoordinationScopes[parameter],
-            value,
-        });
-        return [setterName, setterFunc];
-        // eslint-disable-next-line react-hooks/exhaustive-deps
-    })), [parameters, coordinationScopes]);
-    return [values, setters];
-}
-/**
- * Obtain the loaders object from
- * the global app state.
- * @returns {object} The loaders object
- * in the `useViewConfigStore` store.
- */
-export function useLoaders() {
-    return useViewConfigStore(state => state.loaders);
-}
-/**
- * Find a specific loader instance for a particular dataset, data type, and view
- * coordination values (mapping from coordination types to coordination values).
- * Uses lodash/isMatch to perform matching against the file definition's
- * coordination value mapping.
- * @param {object} loaders The value returned by useLoaders.
- * @param {string} dataset The dataset UID.
- * @param {string} dataType The data type for the matching file.
- * @param {object} viewCoordinationValues Current coordination values
- * from the view. Match these against a subset of file definition coordination
- * values.
- * @returns The matching loader instance or `null`.
- */
-export function useMatchingLoader(loaders, dataset, dataType, viewCoordinationValues) {
-    return useMemo(() => {
-        if (!loaders[dataset]) {
-            return null;
-        }
-        const loaderInternMap = loaders[dataset].loaders[dataType];
-        if (!loaderInternMap) {
-            return null;
-        }
-        const loaderKeys = Array.from(loaderInternMap.keys());
-        const matchingKey = loaderKeys
-            .find(fileCoordinationValues => isMatch(fileCoordinationValues, viewCoordinationValues));
-        if (!matchingKey) {
-            return null;
-        }
-        return loaderInternMap.get(matchingKey);
-    }, [loaders, dataset, dataType, viewCoordinationValues]);
-}
-/**
- * Find a specific loader instance for a particular dataset, data type, and view
- * coordination values (mapping from coordination types to coordination values).
- * Uses lodash/isMatch to perform matching against the file definition's
- * coordination value mapping.
- * @param {object} loaders The value returned by useLoaders.
- * @param {string} dataset The dataset UID.
- * @param {string} dataType The data type for the matching file.
- * @param {object} viewCoordinationValues Current coordination values
- * from the view. Match these against a subset of file definition coordination
- * values.
- * @returns The matching loader instance or `null`.
- */
-export function useMatchingLoaders(loaders, dataset, dataType, viewCoordinationValuesObj) {
-    return useMemo(() => {
-        if (!loaders[dataset]) {
-            return null;
-        }
-        const loaderInternMap = loaders[dataset].loaders[dataType];
-        if (!loaderInternMap) {
-            return null;
-        }
-        const loaderKeys = Array.from(loaderInternMap.keys());
-        function getLoader(viewCoordinationValues) {
-            const matchingKey = loaderKeys
-                .find(fileCoordinationValues => isMatch(fileCoordinationValues, viewCoordinationValues));
-            return loaderInternMap.get(matchingKey);
-        }
-        return fromEntries(Object.entries(viewCoordinationValuesObj).map(([key, viewCoordinationValues]) => ([
-            key,
-            getLoader(viewCoordinationValues),
-        ])));
-    }, [loaders, dataset, dataType, viewCoordinationValuesObj]);
-}
-/**
- * Obtain the view config layout array from
- * the global app state.
- * @returns {object[]} The layout array
- * in the `useViewConfigStore` store.
- */
-export function useLayout() {
-    return useViewConfigStore(state => state.viewConfig?.layout);
-}
-/**
- * Obtain the component removal function from
- * the global app state.
- * @returns {function} The remove component function
- * in the `useViewInfoStore` store.
- */
-export function useRemoveComponent() {
-    return useViewConfigStore(state => state.removeComponent);
-}
-/**
- * Obtain the component prop setter function from
- * the global app state.
- * @returns {function} The set component props function
- * in the `useViewInfoStore` store.
- */
-export function useChangeLayout() {
-    return useViewConfigStore(state => state.changeLayout);
-}
-/**
- * Obtain the loaders setter function from
- * the global app state.
- * @returns {function} The loaders setter function
- * in the `useViewConfigStore` store.
- */
-export function useSetLoaders() {
-    return useViewConfigStore(state => state.setLoaders);
-}
-/**
- * Obtain the view config setter function from
- * the global app state.
- * @returns {function} The view config setter function
- * in the `useViewConfigStore` store.
- */
-export function useSetViewConfig(viewConfigStoreApi) {
-    const setViewConfigRef = useRef(viewConfigStoreApi.getState().setViewConfig);
-    const setViewConfig = setViewConfigRef.current;
-    return setViewConfig;
-}
-/**
- * Obtain the component hover value from
- * the global app state.
- * @returns {number} The hovered component ID
- * in the `useHoverStore` store.
- */
-export function useComponentHover() {
-    return useHoverStore(state => state.componentHover);
-}
-/**
- * Obtain the component hover setter function from
- * the global app state.
- * @returns {function} The component hover setter function
- * in the `useHoverStore` store.
- */
-export function useSetComponentHover() {
-    return useHoverStore(state => state.setComponentHover);
-}
-/**
- * Obtain the warning message from
- * the global app state.
- * @returns {string} The warning message
- * in the `useWarnStore` store.
- */
-export function useWarning() {
-    return useWarnStore(state => state.warning);
-}
-/**
- * Obtain the warning setter function from
- * the global app state.
- * @returns {function} The warning setter function
- * in the `useWarnStore` store.
- */
-export function useSetWarning() {
-    return useWarnStore(state => state.setWarning);
-}
-/**
- * Obtain the component view info value from
- * the global app state.
- * @returns {object} The view info object for the component
- * in the `useViewInfoStore` store.
- */
-export function useComponentViewInfo(uuid) {
-    return useViewInfoStore(useCallback(state => state.viewInfo[uuid], [uuid]));
-}
-/**
- * Obtain the component view info setter function from
- * the global app state.
- * @returns {function} The component view info setter function
- * in the `useViewInfoStore` store.
- */
-export function useSetComponentViewInfo(uuid) {
-    const setViewInfoRef = useRef(useViewInfoStore.getState().setComponentViewInfo);
-    const setComponentViewInfo = viewInfo => setViewInfoRef.current(uuid, viewInfo);
-    return setComponentViewInfo;
-}
-/**
- * Obtain the grid resize count value
- * from the global app state.
- * @returns {number} The grid resize increment value.
- */
-export function useGridResize() {
-    return useGridSizeStore(state => state.resizeCount);
-}
-/**
- * Obtain the grid resize count increment function
- * from the global app state.
- * @returns {function} The grid resize count increment
- * function.
- */
-export function useEmitGridResize() {
-    return useGridSizeStore(state => state.incrementResizeCount);
-}