@theihtisham/agent-shadow-brain 5.2.0 → 6.0.2

package/dist/brain/brain-notebook.js

@@ -0,0 +1,379 @@
+// src/brain/brain-notebook.ts — Jupyter-style interactive brain explorer
+// v6.0.2 — Multimodal Edition
+//
+// A .shadow-brain.notebook.md file format that mixes markdown narrative with
+// executable "brain query" cells. Pure Markdown with HTML comments delimiting
+// cell boundaries — renders cleanly on GitHub, diffable, and PR-reviewable.
+//
+// Cell kinds: markdown · query (recall|search|dna|replay|archetype|stats) · code
+//
+// Exposed: createNotebook, parse, runCell, runAll, save, toMarkdown
+import * as fs from 'fs';
+import * as path from 'path';
+const BRAIN_VERSION = '6.0.2';
+const DEFAULT_DIR = '.shadow-brain/notebooks';
+export class BrainNotebook {
+    /** Create a starter notebook on disk and return its path. */
+    async createNotebook(project, title) {
+        const now = new Date().toISOString();
+        const slug = slugify(title);
+        const dir = path.join(project, DEFAULT_DIR);
+        fs.mkdirSync(dir, { recursive: true });
+        const filePath = path.join(dir, `${slug}.md`);
+        const nb = {
+            title,
+            cells: starterCells(),
+            metadata: { project, created: now, modified: now, brain_version: BRAIN_VERSION },
+        };
+        await this.save(nb, filePath);
+        return { path: filePath };
+    }
+    /** Parse a notebook from disk. */
+    async parse(filePath) {
+        const raw = fs.readFileSync(filePath, 'utf-8');
+        return this.parseString(raw, filePath);
+    }
+    /** Parse a notebook from a raw string (useful for tests). */
+    parseString(raw, source = 'unknown') {
+        const lines = raw.split(/\r?\n/);
+        let i = 0;
+        // Title — first H1 (or the file basename as a fallback)
+        let title = path.basename(source, path.extname(source));
+        while (i < lines.length && !/^#\s+/.test(lines[i]))
+            i++;
+        if (i < lines.length) {
+            title = lines[i].replace(/^#\s+/, '').trim();
+            i++;
+        }
+        // Optional metadata block — <!-- meta: { ... } -->
+        let metadata = {
+            project: '',
+            created: new Date().toISOString(),
+            modified: new Date().toISOString(),
+            brain_version: BRAIN_VERSION,
+        };
+        while (i < lines.length && lines[i].trim() === '')
+            i++;
+        const metaMatch = i < lines.length ? lines[i].match(/^<!--\s*meta:\s*(\{.*\})\s*-->\s*$/) : null;
+        if (metaMatch) {
+            try {
+                const parsed = JSON.parse(metaMatch[1]);
+                metadata = { ...metadata, ...parsed };
+            }
+            catch { /* ignore corrupt meta */ }
+            i++;
+        }
+        const cells = [];
+        let buffer = [];
+        let current = null;
+        let pendingResult = null;
+        const flush = () => {
+            if (!current) {
+                // implicit markdown until first cell marker
+                const md = buffer.join('\n').trim();
+                if (md)
+                    cells.push({ kind: 'markdown', source: md });
+                buffer = [];
+                return;
+            }
+            if (current.kind === 'markdown') {
+                const src = buffer.join('\n').trim();
+                if (src)
+                    cells.push({ kind: 'markdown', source: src });
+            }
+            else if (current.kind === 'query') {
+                const src = buffer.join('\n').trim();
+                const cell = { kind: 'query', queryType: current.queryType, source: src };
+                if (pendingResult) {
+                    cell.lastRun = pendingResult.lastRun;
+                    cell.lastResult = pendingResult.lines.join('\n').trim();
+                    pendingResult = null;
+                }
+                cells.push(cell);
+            }
+            else if (current.kind === 'code') {
+                const src = buffer.join('\n').trim();
+                cells.push({ kind: 'code', language: current.language, source: stripCodeFence(src) });
+            }
+            buffer = [];
+        };
+        for (; i < lines.length; i++) {
+            const line = lines[i];
+            const cellMatch = line.match(/^<!--\s*cell:(markdown|query|code)(?:\s+([^>]*?))?\s*-->\s*$/);
+            const resultMatch = line.match(/^<!--\s*cell:query-result(?:\s+run=([^\s>]+))?\s*-->\s*$/);
+            const endMatch = line.match(/^<!--\s*\/cell:query-result\s*-->\s*$/);
+            if (resultMatch) {
+                // capture lines until matching end (or next cell marker)
+                const runTs = resultMatch[1] ?? new Date().toISOString();
+                const resLines = [];
+                i++;
+                while (i < lines.length) {
+                    const ln = lines[i];
+                    if (/^<!--\s*\/cell:query-result\s*-->\s*$/.test(ln))
+                        break;
+                    if (/^<!--\s*cell:(markdown|query|code)/.test(ln)) {
+                        i--;
+                        break;
+                    }
+                    resLines.push(ln);
+                    i++;
+                }
+                pendingResult = { lastRun: runTs, lines: resLines };
+                continue;
+            }
+            if (endMatch)
+                continue;
+            if (cellMatch) {
+                flush();
+                const kind = cellMatch[1];
+                const attrs = parseAttrs(cellMatch[2] ?? '');
+                if (kind === 'query') {
+                    const qt = attrs.type || 'recall';
+                    current = { kind: 'query', queryType: qt };
+                }
+                else if (kind === 'code') {
+                    const lang = attrs.language || attrs.lang || 'ts';
+                    current = { kind: 'code', language: lang };
+                }
+                else {
+                    current = { kind: 'markdown' };
+                }
+                continue;
+            }
+            buffer.push(line);
+        }
+        flush();
+        return { title, cells, metadata };
+    }
+    /** Run a single cell. Markdown cells are no-ops; code cells echo with a TODO. */
+    async runCell(notebook, cellIndex) {
+        const cell = notebook.cells[cellIndex];
+        if (!cell)
+            throw new Error(`No cell at index ${cellIndex}`);
+        const start = Date.now();
+        let result = '';
+        if (cell.kind === 'markdown') {
+            result = '_(markdown cell — nothing to run)_';
+        }
+        else if (cell.kind === 'code') {
+            result = `_(code cell — execution sandboxed)_\n\nLanguage: ${cell.language}\nTODO: wire up a sandboxed runner.\n\n\`\`\`${cell.language}\n${cell.source}\n\`\`\``;
+        }
+        else {
+            result = await this.executeQuery(cell, notebook.metadata.project);
+            cell.lastResult = result;
+            cell.lastRun = new Date().toISOString();
+        }
+        return { result, durationMs: Date.now() - start };
+    }
+    /** Run every query cell in order. */
+    async runAll(notebook) {
+        const start = Date.now();
+        const out = [];
+        for (let i = 0; i < notebook.cells.length; i++) {
+            const cell = notebook.cells[i];
+            if (cell.kind !== 'query') {
+                out.push({ index: i, kind: cell.kind });
+                continue;
+            }
+            try {
+                const r = await this.runCell(notebook, i);
+                out.push({ index: i, kind: cell.kind, result: r.result, durationMs: r.durationMs });
+            }
+            catch (e) {
+                out.push({ index: i, kind: cell.kind, error: String(e.message ?? e) });
+            }
+        }
+        return { cells: out, totalDurationMs: Date.now() - start, ranAt: new Date().toISOString() };
+    }
+    /** Write the notebook back to disk with the latest run results inlined. */
+    async save(notebook, filePath) {
+        notebook.metadata.modified = new Date().toISOString();
+        fs.mkdirSync(path.dirname(filePath), { recursive: true });
+        const tmp = filePath + '.tmp';
+        fs.writeFileSync(tmp, this.toMarkdown(notebook));
+        fs.renameSync(tmp, filePath);
+    }
+    /** Render the notebook as a plain Markdown document. */
+    toMarkdown(notebook) {
+        const parts = [];
+        parts.push(`# ${notebook.title}`, '');
+        parts.push(`<!-- meta: ${JSON.stringify(notebook.metadata)} -->`, '');
+        for (const cell of notebook.cells) {
+            if (cell.kind === 'markdown') {
+                parts.push('<!-- cell:markdown -->');
+                parts.push(cell.source, '');
+            }
+            else if (cell.kind === 'query') {
+                parts.push(`<!-- cell:query type=${cell.queryType} -->`);
+                parts.push(cell.source, '');
+                if (cell.lastResult) {
+                    parts.push(`<!-- cell:query-result run=${cell.lastRun ?? new Date().toISOString()} -->`);
+                    parts.push(cell.lastResult);
+                    parts.push('<!-- /cell:query-result -->', '');
+                }
+            }
+            else {
+                parts.push(`<!-- cell:code language=${cell.language} -->`);
+                parts.push('```' + cell.language, cell.source, '```', '');
+            }
+        }
+        return parts.join('\n').replace(/\n{3,}/g, '\n\n');
+    }
+    // ── Query execution ──────────────────────────────────────────────────────
+    async executeQuery(cell, project) {
+        const q = cell.source.trim();
+        if (!q)
+            return '_(empty query — add a search term and re-run)_';
+        try {
+            switch (cell.queryType) {
+                case 'recall':
+                case 'search':
+                    return await this.runRecall(q, project);
+                case 'dna':
+                    return await this.runDna(q || project);
+                case 'replay':
+                    return await this.runReplay(q);
+                case 'archetype':
+                    return await this.runArchetype(q || project);
+                case 'stats':
+                    return await this.runStats();
+                default:
+                    return `_(unknown query type: ${cell.queryType})_`;
+            }
+        }
+        catch (e) {
+            return `_(query failed: ${e.message ?? e})_`;
+        }
+    }
+    async runRecall(query, project) {
+        const mod = await tryImport('./hierarchical-memory.js');
+        if (!mod)
+            return this.fallbackResult('hierarchical-memory module not loaded — install brain core to enable recall.');
+        const hm = typeof mod.getHierarchicalMemory === 'function' ? mod.getHierarchicalMemory() : null;
+        if (!hm || typeof hm.search !== 'function')
+            return this.fallbackResult('hierarchical-memory has no search() method available.');
+        const results = await hm.search({ query, project, limit: 10 }).catch(() => null);
+        if (!results || !Array.isArray(results) || results.length === 0)
+            return '_(no matching memories)_';
+        return results
+            .map((r, idx) => {
+            const id = r.id ?? r.memoryId ?? `mem_${idx}`;
+            const snippet = (r.snippet ?? r.content ?? r.text ?? '').toString().slice(0, 240);
+            const score = typeof r.score === 'number' ? ` _(score: ${r.score.toFixed(3)})_` : '';
+            return `${idx + 1}. \`${id}\`${score} — ${snippet}`;
+        })
+            .join('\n');
+    }
+    async runDna(project) {
+        const mod = await tryImport('./brain-dna.js');
+        if (!mod)
+            return this.fallbackResult('brain-dna module not loaded.');
+        const dna = typeof mod.getBrainDna === 'function' ? mod.getBrainDna() : null;
+        if (!dna || typeof dna.snapshot !== 'function')
+            return this.fallbackResult('brain-dna has no snapshot() method available.');
+        const snap = await dna.snapshot(project).catch(() => null);
+        if (!snap)
+            return '_(no DNA snapshot available)_';
+        return '```json\n' + JSON.stringify(snap, null, 2).slice(0, 4000) + '\n```';
+    }
+    async runReplay(target) {
+        const mod = await tryImport('./brain-replay.js');
+        if (!mod)
+            return this.fallbackResult('brain-replay module not loaded.');
+        const replay = typeof mod.getBrainReplay === 'function' ? mod.getBrainReplay() : null;
+        if (!replay || typeof replay.list !== 'function')
+            return this.fallbackResult('brain-replay has no list() method available.');
+        const sessions = await replay.list({ target, limit: 10 }).catch(() => null);
+        if (!sessions || !Array.isArray(sessions) || sessions.length === 0)
+            return '_(no replay sessions found)_';
+        return sessions.map((s, idx) => `${idx + 1}. \`${s.id ?? idx}\` — ${s.title ?? s.description ?? 'session'} (${s.startedAt ?? 'unknown'})`).join('\n');
+    }
+    async runArchetype(project) {
+        const mod = await tryImport('./brain-archetypes.js');
+        if (!mod)
+            return this.fallbackResult('brain-archetypes module not loaded.');
+        const arch = typeof mod.getBrainArchetypes === 'function' ? mod.getBrainArchetypes() : null;
+        if (!arch || typeof arch.classify !== 'function')
+            return this.fallbackResult('brain-archetypes has no classify() method available.');
+        const result = await arch.classify(project).catch(() => null);
+        if (!result)
+            return '_(no archetype available)_';
+        return '```json\n' + JSON.stringify(result, null, 2).slice(0, 2000) + '\n```';
+    }
+    async runStats() {
+        const mod = await tryImport('./hierarchical-memory.js');
+        if (!mod)
+            return this.fallbackResult('hierarchical-memory module not loaded.');
+        const hm = typeof mod.getHierarchicalMemory === 'function' ? mod.getHierarchicalMemory() : null;
+        if (!hm || typeof hm.stats !== 'function')
+            return this.fallbackResult('hierarchical-memory has no stats() method available.');
+        const stats = await hm.stats().catch(() => null);
+        if (!stats)
+            return '_(no stats available)_';
+        return '```json\n' + JSON.stringify(stats, null, 2).slice(0, 2000) + '\n```';
+    }
+    fallbackResult(reason) {
+        return `_(empty-state: ${reason})_\n\nThis cell will populate once the brain core is wired up. The notebook itself is fully functional — re-run when modules become available.`;
+    }
+}
+// ── Helpers ───────────────────────────────────────────────────────────────
+function slugify(s) {
+    return s.toLowerCase().replace(/[^a-z0-9]+/g, '-').replace(/^-+|-+$/g, '').slice(0, 60) || 'notebook';
+}
+function parseAttrs(s) {
+    const out = {};
+    const rx = /(\w+)\s*=\s*("([^"]*)"|'([^']*)'|(\S+))/g;
+    let m;
+    while ((m = rx.exec(s)) !== null) {
+        out[m[1]] = m[3] ?? m[4] ?? m[5] ?? '';
+    }
+    return out;
+}
+function stripCodeFence(src) {
+    const m = src.match(/^```\w*\n([\s\S]*?)\n```\s*$/);
+    return m ? m[1] : src;
+}
+async function tryImport(spec) {
+    try {
+        return await import(spec).catch(() => null);
+    }
+    catch {
+        return null;
+    }
+}
+function starterCells() {
+    return [
+        {
+            kind: 'markdown',
+            source: 'This is a **Shadow Brain notebook** — a Jupyter-style explorer for your project memory.\n\nEach `query` cell below runs against your local brain. Edit the source, then re-run to refresh the inlined result.',
+        },
+        { kind: 'query', queryType: 'stats', source: '(no input — returns brain-wide stats)' },
+        {
+            kind: 'markdown',
+            source: '## Try a recall\n\nReplace the query below with anything you want to investigate.',
+        },
+        { kind: 'query', queryType: 'recall', source: 'recent decisions in this project' },
+        {
+            kind: 'markdown',
+            source: '## Check the project archetype\n\nWhat kind of project does the brain think this is?',
+        },
+        { kind: 'query', queryType: 'archetype', source: 'default project' },
+        {
+            kind: 'markdown',
+            source: '## Notes\n\nWrite anything here — this is a normal Markdown document. Add a `<!-- cell:code language=ts -->` block to keep code snippets near your investigation.',
+        },
+        {
+            kind: 'code',
+            language: 'ts',
+            source: '// Example snippet — wire your own thoughts here.\nconst summary = "this notebook is git-trackable and PR-reviewable";',
+        },
+    ];
+}
+let _instance = null;
+export function getBrainNotebook() {
+    if (!_instance)
+        _instance = new BrainNotebook();
+    return _instance;
+}
+export function resetBrainNotebookForTests() { _instance = null; }
+//# sourceMappingURL=brain-notebook.js.map

package/dist/brain/brain-notebook.js.map

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package/dist/brain/brain-portability.js

@@ -35,7 +35,7 @@ export class BrainPortability {
         const fileName = `brain-${projectName}-${timestamp}.json`;
         const filePath = path.join(this.exportDir, fileName);
         const data = {
-            version: '5.0.1',
+            version: '5.2.0',
             exportedAt: new Date(),
             projectName,
             projectDir: this.projectDir,

package/dist/brain/brain-quantize.d.ts

@@ -0,0 +1,62 @@
+export interface CompressionReport {
+    originalBytes: number;
+    compressedBytes: number;
+    compressionRatio: number;
+    vectorCount: number;
+    dim: number;
+    encodingError: {
+        meanAbs: number;
+        max: number;
+    };
+    durationMs: number;
+}
+export interface QuantizedEntry {
+    q: Int8Array;
+    scale: number;
+}
+export interface CompressedIndex {
+    vectors: Map<string, QuantizedEntry>;
+    dim: number;
+    recallFn: (query: number[], topK: number) => Array<{
+        id: string;
+        score: number;
+    }>;
+}
+export interface RoundtripErrorReport {
+    meanAbs: number;
+    max: number;
+    samples: number;
+}
+export declare class BrainQuantize {
+    /** Symmetric int8 quantization with per-vector scale. */
+    quantize(vector: number[]): Int8Array;
+    /** Recover an approximation of the original float vector. */
+    dequantize(q: Int8Array, scale: number): number[];
+    /**
+     * Cosine similarity on quantized vectors WITHOUT dequantizing first.
+     *
+     * If `a` and `b` were derived from unit-norm float vectors, the cosine is
+     * just the dot product after rescaling. We compute the integer dot then
+     * apply `scaleA * scaleB` to convert back to the float dot, and clamp to
+     * [-1, 1] for numeric safety. Note: the dim/127^2 factor in the spec is the
+     * theoretical worst-case scale (when every element is ±127); the actual
+     * normalization is captured entirely by scaleA*scaleB, so we use that and
+     * do not double-divide. The clamp guards against quantization rounding
+     * pushing the result slightly out of range.
+     */
+    cosineQuantized(a: Int8Array, scaleA: number, b: Int8Array, scaleB: number): number;
+    /** Convert a v2 sharded JSON index into a single compressed .q8 binary. */
+    compressIndex(srcPath: string, outPath: string): Promise<CompressionReport>;
+    /** Load a .q8 file and return vectors plus a ready-to-use recall function. */
+    loadCompressedIndex(filePath: string): Promise<CompressedIndex>;
+    /** Self-test: report mean / max absolute reconstruction error on `vectors`. */
+    quantizeRoundtripError(vectors: number[][]): RoundtripErrorReport;
+    private scaleOf;
+    private readShardDocs;
+    private collectDocs;
+    private measureBytes;
+    private atomicWrite;
+}
+export declare function getBrainQuantize(): BrainQuantize;
+export declare function resetBrainQuantizeForTests(): void;
+//# sourceMappingURL=brain-quantize.d.ts.map

package/dist/brain/brain-quantize.d.ts.map

@@ -0,0 +1 @@
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