@the-cascade-protocol/cli 0.2.4 → 0.3.0

package/dist/lib/fhir-converter/index.js

@@ -3,27 +3,46 @@
  *
  * Converts between FHIR R4 JSON and Cascade Protocol RDF (Turtle/JSON-LD).
  *
- * Supported FHIR R4 resource types:
+ * Supported FHIR R4 resource types (Layer 2 — full vocabulary mapping):
  *   - MedicationStatement / MedicationRequest -> health:MedicationRecord
- *   - Condition -> health:ConditionRecord
- *   - AllergyIntolerance -> health:AllergyRecord
- *   - Observation (lab) -> health:LabResultRecord
- *   - Observation (vital) -> clinical:VitalSign
- *   - Patient -> cascade:PatientProfile
- *   - Immunization -> health:ImmunizationRecord
- *   - Coverage -> coverage:InsurancePlan
+ *   - Condition                               -> health:ConditionRecord
+ *   - AllergyIntolerance                      -> health:AllergyRecord
+ *   - Observation (lab)                       -> health:LabResultRecord
+ *   - Observation (vital signs)               -> clinical:VitalSign
+ *   - Patient                                 -> cascade:PatientProfile
+ *   - Immunization                            -> health:ImmunizationRecord
+ *   - Coverage                                -> coverage:InsurancePlan
+ *   - Procedure                               -> clinical:Procedure
+ *   - DocumentReference                       -> clinical:ClinicalDocument
+ *   - Encounter                               -> clinical:Encounter
+ *   - DiagnosticReport                        -> clinical:LaboratoryReport
+ *   - MedicationAdministration                -> clinical:MedicationAdministration
+ *   - Device                                  -> clinical:ImplantedDevice
+ *   - ImagingStudy                            -> clinical:ImagingStudy
+ *   - Claim                                   -> coverage:ClaimRecord
+ *   - ExplanationOfBenefit                    -> coverage:BenefitStatement
+ *
+ * All other resource types receive Layer 1 passthrough (stored as fhir:{Type}).
+ * Explicitly excluded types: SupplyDelivery, CareTeam, CarePlan, Provenance, Medication.
  *
  * Zero network calls. All conversion is local.
  *
- * This module re-exports all public API for backward compatibility.
+ * This module re-exports all public API.
  * Internal implementation is split across:
- *   - types.ts         Shared types, namespaces, and quad helpers
- *   - fhir-to-cascade.ts  FHIR -> Cascade converters
- *   - cascade-to-fhir.ts  Cascade -> FHIR converters
+ *   - types.ts                  Shared types, namespaces, and quad helpers
+ *   - fhir-to-cascade.ts        FHIR -> Cascade dispatcher
+ *   - converters-clinical.ts    Clinical resource converters
+ *   - converters-demographics.ts Patient, immunization, coverage converters
+ *   - converters-clinical-admin.ts Claim, EOB converters
+ *   - converters-passthrough.ts  Layer 1 passthrough for unknown types
+ *   - cascade-to-fhir.ts        Cascade -> FHIR reverse converters
  */
-import { SUPPORTED_TYPES, quadsToTurtle, quadsToJsonLd, } from './types.js';
+import { DataFactory } from 'n3';
+import { NS, quadsToTurtle, quadsToJsonLd, } from './types.js';
+const { namedNode, literal, quad: makeQuad } = DataFactory;
 import { convertFhirResourceToQuads } from './fhir-to-cascade.js';
 import { convertCascadeToFhir } from './cascade-to-fhir.js';
+import { EXCLUDED_TYPES, EXCLUDED_REASONS } from './converters-passthrough.js';
 // Re-export public functions from sub-modules
 export { convertFhirResourceToQuads, convertFhirToCascade } from './fhir-to-cascade.js';
 export { convertCascadeToFhir } from './cascade-to-fhir.js';
@@ -32,8 +51,12 @@ export { convertCascadeToFhir } from './cascade-to-fhir.js';
 // ---------------------------------------------------------------------------
 /**
  * Convert an entire FHIR input (single resource or Bundle) to Cascade format.
+ *
+ * @param passthroughMinimal  If true, omits cascade:fhirJson from passthrough records.
+ *                            Round-trip export is not supported in minimal mode.
+ *                            Produces smaller output for display-only scenarios.
  */
-export async function convert(input, from, to, outputSerialization = 'turtle') {
+export async function convert(input, from, to, outputSerialization = 'turtle', sourceSystem, passthroughMinimal = false) {
     const warnings = [];
     const errors = [];
     const results = [];
@@ -68,11 +91,11 @@ export async function convert(input, from, to, outputSerialization = 'turtle') {
         }
         const allQuads = [];
         for (const res of fhirResources) {
-            if (!SUPPORTED_TYPES.has(res.resourceType)) {
-                warnings.push(`Skipping unsupported FHIR resource type: ${res.resourceType}`);
+            if (EXCLUDED_TYPES.has(res.resourceType)) {
+                warnings.push(`Skipping excluded FHIR resource type: ${res.resourceType} — ${EXCLUDED_REASONS[res.resourceType] ?? 'intentionally excluded'}`);
                 continue;
             }
-            const result = convertFhirResourceToQuads(res);
+            const result = convertFhirResourceToQuads(res, passthroughMinimal);
             if (result) {
                 allQuads.push(...result._quads);
                 results.push({
@@ -91,6 +114,19 @@ export async function convert(input, from, to, outputSerialization = 'turtle') {
                 warnings, errors: ['No convertible FHIR resources found'], results: [],
             };
         }
+        // Inject cascade:sourceSystem into every record if --source-system was given.
+        // We add one triple per unique subject that has an rdf:type (i.e. a real record).
+        if (sourceSystem) {
+            const recordSubjects = new Set();
+            for (const q of allQuads) {
+                if (q.predicate.value === NS.rdf + 'type') {
+                    recordSubjects.add(q.subject.value);
+                }
+            }
+            for (const subjectUri of recordSubjects) {
+                allQuads.push(makeQuad(namedNode(subjectUri), namedNode(NS.cascade + 'sourceSystem'), literal(sourceSystem)));
+            }
+        }
         // Determine output format
         let output;
         if (outputSerialization === 'jsonld' || to === 'jsonld') {

package/dist/lib/fhir-converter/index.js.map

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package/dist/lib/fhir-converter/types.d.ts

@@ -22,6 +22,8 @@ export interface BatchConversionResult {
     errors: string[];
     results: ConversionResult[];
 }
+/** Current Cascade Protocol schema version emitted on all converted records. */
+export declare const SCHEMA_VERSION = "1.3";
 export declare const NS: {
     readonly cascade: "https://ns.cascadeprotocol.org/core/v1#";
     readonly health: "https://ns.cascadeprotocol.org/health/v1#";
@@ -39,6 +41,8 @@ export declare const NS: {
 /** Standard Turtle prefix block for all generated output. */
 export declare const TURTLE_PREFIXES: Record<string, string>;
 export declare const CODING_SYSTEM_MAP: Record<string, string>;
+/** Returns true for any known LOINC coding system URL variant. */
+export declare function isLoincSystem(system: string | undefined): boolean;
 export declare const VITAL_LOINC_CODES: Record<string, {
     type: string;
     name: string;
@@ -47,7 +51,7 @@ export declare const VITAL_LOINC_CODES: Record<string, {
 }>;
 /** FHIR observation categories that indicate vital signs */
 export declare const VITAL_CATEGORIES: string[];
-/** Set of FHIR resource types supported for conversion */
+/** Set of FHIR resource types that receive full Layer 2 conversion */
 export declare const SUPPORTED_TYPES: Set<string>;
 /**
  * Ensure an ISO 8601 dateTime string with timezone.
@@ -70,6 +74,13 @@ export declare function tripleRef(subject: string, predicate: string, object: st
 export declare function tripleType(subject: string, rdfType: string): Quad;
 export declare function tripleDateTime(subject: string, predicate: string, dateStr: string): Quad;
 export declare function tripleDate(subject: string, predicate: string, dateStr: string): Quad;
+/**
+ * Mint a deterministic subject URI from a FHIR resource.
+ * - If resource.id is a valid UUID v4: returns urn:uuid:{resource.id}
+ * - If resource.id exists but is not a UUID: returns urn:uuid:{deterministicUuid(resourceType:id)}
+ * - If no resource.id: falls back to a random UUID (last resort)
+ */
+export declare function mintSubjectUri(resource: any): string;
 /** Common triples every Cascade resource gets */
 export declare function commonTriples(subject: string): Quad[];
 export declare function quadsToTurtle(quads: Quad[]): Promise<string>;

package/dist/lib/fhir-converter/types.d.ts.map

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package/dist/lib/fhir-converter/types.js

@@ -4,8 +4,14 @@
  * Used by both fhir-to-cascade and cascade-to-fhir converters.
  */
 import { DataFactory, Writer } from 'n3';
+import { randomUUID, createHash } from 'node:crypto';
 const { namedNode, literal, quad: makeQuad } = DataFactory;
 // ---------------------------------------------------------------------------
+// Schema version
+// ---------------------------------------------------------------------------
+/** Current Cascade Protocol schema version emitted on all converted records. */
+export const SCHEMA_VERSION = '1.3';
+// ---------------------------------------------------------------------------
 // Namespace constants
 // ---------------------------------------------------------------------------
 export const NS = {
@@ -43,26 +49,51 @@ export const CODING_SYSTEM_MAP = {
     'urn:oid:2.16.840.1.113883.6.88': NS.rxnorm,
     'http://snomed.info/sct': NS.sct,
     'http://loinc.org': NS.loinc,
+    'https://loinc.org': NS.loinc,
+    'http://loinc.org/': NS.loinc,
+    'urn:oid:2.16.840.1.113883.6.1': NS.loinc, // LOINC OID (C-CDA / older HL7)
     'http://hl7.org/fhir/sid/icd-10-cm': NS.icd10,
     'http://hl7.org/fhir/sid/icd-10': NS.icd10,
 };
+/** Returns true for any known LOINC coding system URL variant. */
+export function isLoincSystem(system) {
+    if (!system)
+        return false;
+    return CODING_SYSTEM_MAP[system] === NS.loinc;
+}
 // ---------------------------------------------------------------------------
 // FHIR vital-sign LOINC code mapping
 // ---------------------------------------------------------------------------
 export const VITAL_LOINC_CODES = {
+    // Core vital signs (US Core Vital Signs profile)
     '8480-6': { type: 'bloodPressureSystolic', name: 'Systolic Blood Pressure', unit: 'mmHg', snomedCode: '271649006' },
     '8462-4': { type: 'bloodPressureDiastolic', name: 'Diastolic Blood Pressure', unit: 'mmHg', snomedCode: '271650006' },
+    '55284-4': { type: 'bloodPressurePanel', name: 'Blood Pressure Panel', unit: 'mmHg', snomedCode: '75367002' },
+    '85354-9': { type: 'bloodPressurePanel', name: 'Blood Pressure Panel', unit: 'mmHg', snomedCode: '75367002' },
+    '8478-0': { type: 'meanBloodPressure', name: 'Mean Blood Pressure', unit: 'mmHg', snomedCode: '6797001' },
     '8867-4': { type: 'heartRate', name: 'Heart Rate', unit: 'bpm', snomedCode: '364075005' },
     '9279-1': { type: 'respiratoryRate', name: 'Respiratory Rate', unit: 'breaths/min', snomedCode: '86290005' },
     '8310-5': { type: 'bodyTemperature', name: 'Body Temperature', unit: 'degC', snomedCode: '386725007' },
+    '8331-1': { type: 'bodyTemperatureOral', name: 'Body Temperature (Oral)', unit: 'degC', snomedCode: '386725007' },
     '2708-6': { type: 'oxygenSaturation', name: 'Oxygen Saturation', unit: '%', snomedCode: '431314004' },
+    '59408-5': { type: 'oxygenSaturation', name: 'Oxygen Saturation (Pulse Ox)', unit: '%', snomedCode: '431314004' },
     '29463-7': { type: 'bodyWeight', name: 'Body Weight', unit: 'kg', snomedCode: '27113001' },
     '8302-2': { type: 'bodyHeight', name: 'Body Height', unit: 'cm', snomedCode: '50373000' },
     '39156-5': { type: 'bmi', name: 'Body Mass Index', unit: 'kg/m2', snomedCode: '60621009' },
+    // Pain
+    '72514-3': { type: 'painSeverity', name: 'Pain Severity (0-10 NRS)', unit: '{score}', snomedCode: '225908003' },
+    // Pediatric growth measurements
+    '9843-4': { type: 'headCircumference', name: 'Head Occipital-Frontal Circumference', unit: 'cm', snomedCode: '363812007' },
+    '8289-1': { type: 'headCircumferencePercentile', name: 'Head Circumference Percentile', unit: '%', snomedCode: '363812007' },
+    '77606-2': { type: 'weightForLengthPercentile', name: 'Weight-for-Length Percentile', unit: '%', snomedCode: '248334005' },
+    '59576-9': { type: 'bmiPercentile', name: 'BMI Percentile', unit: '%', snomedCode: '60621009' },
+    // Ophthalmology
+    '79893-4': { type: 'intraocularPressureRightEye', name: 'Intraocular Pressure (Right Eye)', unit: 'mm[Hg]', snomedCode: '41633001' },
+    '79892-6': { type: 'intraocularPressureLeftEye', name: 'Intraocular Pressure (Left Eye)', unit: 'mm[Hg]', snomedCode: '41633001' },
 };
 /** FHIR observation categories that indicate vital signs */
 export const VITAL_CATEGORIES = ['vital-signs', 'vital-sign'];
-/** Set of FHIR resource types supported for conversion */
+/** Set of FHIR resource types that receive full Layer 2 conversion */
 export const SUPPORTED_TYPES = new Set([
     'MedicationStatement', 'MedicationRequest',
     'Condition',
@@ -71,6 +102,15 @@ export const SUPPORTED_TYPES = new Set([
     'Patient',
     'Immunization',
     'Coverage',
+    'Procedure',
+    'DocumentReference',
+    'Encounter',
+    'DiagnosticReport',
+    'MedicationAdministration',
+    'Device',
+    'ImagingStudy',
+    'Claim',
+    'ExplanationOfBenefit',
 ]);
 // ---------------------------------------------------------------------------
 // Helper: date formatting
@@ -146,11 +186,36 @@ export function tripleDateTime(subject, predicate, dateStr) {
 export function tripleDate(subject, predicate, dateStr) {
     return tripleTyped(subject, predicate, dateStr, NS.xsd + 'date');
 }
+// ---------------------------------------------------------------------------
+// Subject URI minting (deterministic from resource.id)
+// ---------------------------------------------------------------------------
+const UUID_V4_REGEX = /^[0-9a-f]{8}-[0-9a-f]{4}-4[0-9a-f]{3}-[89ab][0-9a-f]{3}-[0-9a-f]{12}$/i;
+function deterministicUuid(input) {
+    const hash = createHash('sha1').update(input).digest('hex');
+    // Format as a deterministic UUID-shaped string (SHA-1 based, not strict v5)
+    const v = ((parseInt(hash.slice(16, 18), 16) & 0x3f) | 0x80).toString(16).padStart(2, '0');
+    return `${hash.slice(0, 8)}-${hash.slice(8, 12)}-5${hash.slice(13, 16)}-${v}${hash.slice(18, 20)}-${hash.slice(20, 32)}`;
+}
+/**
+ * Mint a deterministic subject URI from a FHIR resource.
+ * - If resource.id is a valid UUID v4: returns urn:uuid:{resource.id}
+ * - If resource.id exists but is not a UUID: returns urn:uuid:{deterministicUuid(resourceType:id)}
+ * - If no resource.id: falls back to a random UUID (last resort)
+ */
+export function mintSubjectUri(resource) {
+    const id = resource?.id;
+    if (!id)
+        return `urn:uuid:${randomUUID()}`;
+    if (UUID_V4_REGEX.test(id))
+        return `urn:uuid:${id}`;
+    const resourceType = resource?.resourceType ?? 'Unknown';
+    return `urn:uuid:${deterministicUuid(`${resourceType}:${id}`)}`;
+}
 /** Common triples every Cascade resource gets */
 export function commonTriples(subject) {
     return [
         tripleRef(subject, NS.cascade + 'dataProvenance', NS.cascade + 'ClinicalGenerated'),
-        tripleStr(subject, NS.cascade + 'schemaVersion', '1.3'),
+        tripleStr(subject, NS.cascade + 'schemaVersion', SCHEMA_VERSION),
     ];
 }
 // ---------------------------------------------------------------------------

package/dist/lib/fhir-converter/types.js.map

@@ -1 +1 @@
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package/dist/lib/output.d.ts

@@ -13,6 +13,11 @@ export interface OutputOptions {
 export declare function formatOutput(data: unknown, opts: OutputOptions): string;
 /**
  * Print result data to stdout.
+ *
+ * Uses process.stdout.write() for correct backpressure handling in Node.js
+ * subprocess mode (execSync pipes). For Bun compiled binaries where stdout
+ * may not flush before exit, the caller should ensure the process does not
+ * exit immediately after large writes.
  */
 export declare function printResult(data: unknown, opts: OutputOptions): void;
 /**

package/dist/lib/output.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"output.d.ts","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,OAAO,CAAC;IACd,OAAO,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,GAAG,MAAM,CAcvE;AAkBD;;GAEG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAEpE;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAMrE;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAQvE"}
+{"version":3,"file":"output.d.ts","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,MAAM,WAAW,aAAa;IAC5B,IAAI,EAAE,OAAO,CAAC;IACd,OAAO,EAAE,OAAO,CAAC;CAClB;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,GAAG,MAAM,CAcvE;AAkBD;;;;;;;GAOG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,OAAO,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAEpE;AAED;;GAEG;AACH,wBAAgB,UAAU,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAMrE;AAED;;GAEG;AACH,wBAAgB,YAAY,CAAC,OAAO,EAAE,MAAM,EAAE,IAAI,EAAE,aAAa,GAAG,IAAI,CAQvE"}

package/dist/lib/output.js

@@ -33,9 +33,14 @@ function formatSingleItem(item) {
 }
 /**
  * Print result data to stdout.
+ *
+ * Uses process.stdout.write() for correct backpressure handling in Node.js
+ * subprocess mode (execSync pipes). For Bun compiled binaries where stdout
+ * may not flush before exit, the caller should ensure the process does not
+ * exit immediately after large writes.
  */
 export function printResult(data, opts) {
-    console.log(formatOutput(data, opts));
+    process.stdout.write(formatOutput(data, opts) + '\n');
 }
 /**
  * Print an error message to stderr.

package/dist/lib/output.js.map

@@ -1 +1 @@
-{"version":3,"file":"output.js","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAOH;;GAEG;AACH,MAAM,UAAU,YAAY,CAAC,IAAa,EAAE,IAAmB;IAC7D,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;IACvC,CAAC;IAED,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACxB,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC/D,CAAC;IAED,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAC;AAChC,CAAC;AAED;;GAEG;AACH,SAAS,gBAAgB,CAAC,IAAa;IACrC,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;QAC9C,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,IAA+B,CAAC,CAAC;QAChE,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,GAAG,KAAK,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAChF,CAAC;IAED,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC;AACtB,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,WAAW,CAAC,IAAa,EAAE,IAAmB;IAC5D,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,CAAC;AACxC,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,OAAe,EAAE,IAAmB;IAC7D,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;IACpD,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,UAAU,OAAO,EAAE,CAAC,CAAC;IACrC,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,YAAY,CAAC,OAAe,EAAE,IAAmB;IAC/D,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACjB,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACd,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QACpD,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,aAAa,OAAO,EAAE,CAAC,CAAC;QACxC,CAAC;IACH,CAAC;AACH,CAAC"}
+{"version":3,"file":"output.js","sourceRoot":"","sources":["../../src/lib/output.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAQH;;GAEG;AACH,MAAM,UAAU,YAAY,CAAC,IAAa,EAAE,IAAmB;IAC7D,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;IACvC,CAAC;IAED,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,KAAK,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,CAAC;QACxB,OAAO,IAAI,CAAC,GAAG,CAAC,CAAC,IAAI,EAAE,EAAE,CAAC,gBAAgB,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAC/D,CAAC;IAED,OAAO,gBAAgB,CAAC,IAAI,CAAC,CAAC;AAChC,CAAC;AAED;;GAEG;AACH,SAAS,gBAAgB,CAAC,IAAa;IACrC,IAAI,OAAO,IAAI,KAAK,QAAQ,EAAE,CAAC;QAC7B,OAAO,IAAI,CAAC;IACd,CAAC;IAED,IAAI,OAAO,IAAI,KAAK,QAAQ,IAAI,IAAI,KAAK,IAAI,EAAE,CAAC;QAC9C,MAAM,OAAO,GAAG,MAAM,CAAC,OAAO,CAAC,IAA+B,CAAC,CAAC;QAChE,OAAO,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,KAAK,CAAC,EAAE,EAAE,CAAC,KAAK,GAAG,KAAK,MAAM,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;IAChF,CAAC;IAED,OAAO,MAAM,CAAC,IAAI,CAAC,CAAC;AACtB,CAAC;AAED;;;;;;;GAOG;AACH,MAAM,UAAU,WAAW,CAAC,IAAa,EAAE,IAAmB;IAC5D,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,CAAC,IAAI,EAAE,IAAI,CAAC,GAAG,IAAI,CAAC,CAAC;AACxD,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,UAAU,CAAC,OAAe,EAAE,IAAmB;IAC7D,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;QACd,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;IACpD,CAAC;SAAM,CAAC;QACN,OAAO,CAAC,KAAK,CAAC,UAAU,OAAO,EAAE,CAAC,CAAC;IACrC,CAAC;AACH,CAAC;AAED;;GAEG;AACH,MAAM,UAAU,YAAY,CAAC,OAAe,EAAE,IAAmB;IAC/D,IAAI,IAAI,CAAC,OAAO,EAAE,CAAC;QACjB,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC;YACd,OAAO,CAAC,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,EAAE,KAAK,EAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QACpD,CAAC;aAAM,CAAC;YACN,OAAO,CAAC,KAAK,CAAC,aAAa,OAAO,EAAE,CAAC,CAAC;QACxC,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/lib/reconciler.d.ts

@@ -0,0 +1,45 @@
+/**
+ * Core reconciliation logic extracted from the reconcile command.
+ *
+ * Exported so that other commands (e.g., pod import) can reuse reconciliation
+ * without going through the CLI layer.
+ */
+export interface ReconcilerOptions {
+    trustScores?: Record<string, number>;
+    labTolerance?: number;
+}
+export interface ReconcilerInput {
+    content: string;
+    systemName: string;
+}
+export interface ReconcilerResult {
+    turtle: string;
+    report: {
+        sources: Array<{
+            system: string;
+            count: number;
+        }>;
+        summary: {
+            totalInputRecords: number;
+            exactDuplicatesRemoved: number;
+            nearDuplicatesMerged: number;
+            conflictsResolved: number;
+            conflictsUnresolved: number;
+            finalRecordCount: number;
+        };
+        transformations: object[];
+        unresolvedConflicts: object[];
+    };
+}
+type CascadeRecordType = 'health:MedicationRecord' | 'health:ConditionRecord' | 'health:AllergyRecord' | 'health:LabResultRecord' | 'health:ImmunizationRecord' | 'clinical:VitalSign' | 'cascade:PatientProfile' | 'coverage:InsurancePlan';
+interface ParsedRecord {
+    uri: string;
+    type: CascadeRecordType;
+    sourceSystem: string;
+    properties: Map<string, string[]>;
+}
+export declare function parseTurtle(turtle: string, defaultSystem: string): Promise<ParsedRecord[]>;
+export declare function normalizeMedName(name: string): string;
+export declare function runReconciliation(inputs: ReconcilerInput[], options?: ReconcilerOptions): Promise<ReconcilerResult>;
+export {};
+//# sourceMappingURL=reconciler.d.ts.map

package/dist/lib/reconciler.d.ts.map

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