@the-cascade-protocol/cli 0.2.4 → 0.3.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/commands/convert.d.ts +8 -5
- package/dist/commands/convert.d.ts.map +1 -1
- package/dist/commands/convert.js +55 -7
- package/dist/commands/convert.js.map +1 -1
- package/dist/commands/pod/helpers.d.ts +2 -0
- package/dist/commands/pod/helpers.d.ts.map +1 -1
- package/dist/commands/pod/helpers.js +62 -1
- package/dist/commands/pod/helpers.js.map +1 -1
- package/dist/commands/pod/import.d.ts +20 -0
- package/dist/commands/pod/import.d.ts.map +1 -0
- package/dist/commands/pod/import.js +382 -0
- package/dist/commands/pod/import.js.map +1 -0
- package/dist/commands/pod/index.d.ts.map +1 -1
- package/dist/commands/pod/index.js +2 -0
- package/dist/commands/pod/index.js.map +1 -1
- package/dist/commands/reconcile.d.ts +32 -0
- package/dist/commands/reconcile.d.ts.map +1 -0
- package/dist/commands/reconcile.js +116 -0
- package/dist/commands/reconcile.js.map +1 -0
- package/dist/index.js +5 -3
- package/dist/index.js.map +1 -1
- package/dist/lib/fhir-converter/cascade-to-fhir-admin.d.ts +13 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-admin.d.ts.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-admin.js +70 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-admin.js.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-clinical.d.ts +36 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-clinical.d.ts.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-clinical.js +407 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-clinical.js.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-demographics.d.ts +15 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-demographics.d.ts.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-demographics.js +115 -0
- package/dist/lib/fhir-converter/cascade-to-fhir-demographics.js.map +1 -0
- package/dist/lib/fhir-converter/cascade-to-fhir.d.ts +9 -3
- package/dist/lib/fhir-converter/cascade-to-fhir.d.ts.map +1 -1
- package/dist/lib/fhir-converter/cascade-to-fhir.js +69 -290
- package/dist/lib/fhir-converter/cascade-to-fhir.js.map +1 -1
- package/dist/lib/fhir-converter/converters-clinical-admin.d.ts +16 -0
- package/dist/lib/fhir-converter/converters-clinical-admin.d.ts.map +1 -0
- package/dist/lib/fhir-converter/converters-clinical-admin.js +166 -0
- package/dist/lib/fhir-converter/converters-clinical-admin.js.map +1 -0
- package/dist/lib/fhir-converter/converters-clinical.d.ts +28 -0
- package/dist/lib/fhir-converter/converters-clinical.d.ts.map +1 -1
- package/dist/lib/fhir-converter/converters-clinical.js +436 -11
- package/dist/lib/fhir-converter/converters-clinical.js.map +1 -1
- package/dist/lib/fhir-converter/converters-demographics.d.ts.map +1 -1
- package/dist/lib/fhir-converter/converters-demographics.js +4 -5
- package/dist/lib/fhir-converter/converters-demographics.js.map +1 -1
- package/dist/lib/fhir-converter/converters-passthrough.d.ts +29 -0
- package/dist/lib/fhir-converter/converters-passthrough.d.ts.map +1 -0
- package/dist/lib/fhir-converter/converters-passthrough.js +86 -0
- package/dist/lib/fhir-converter/converters-passthrough.js.map +1 -0
- package/dist/lib/fhir-converter/fhir-to-cascade.d.ts +8 -4
- package/dist/lib/fhir-converter/fhir-to-cascade.d.ts.map +1 -1
- package/dist/lib/fhir-converter/fhir-to-cascade.js +41 -10
- package/dist/lib/fhir-converter/fhir-to-cascade.js.map +1 -1
- package/dist/lib/fhir-converter/import-manifest.d.ts +40 -0
- package/dist/lib/fhir-converter/import-manifest.d.ts.map +1 -0
- package/dist/lib/fhir-converter/import-manifest.js +66 -0
- package/dist/lib/fhir-converter/import-manifest.js.map +1 -0
- package/dist/lib/fhir-converter/index.d.ts +33 -13
- package/dist/lib/fhir-converter/index.d.ts.map +1 -1
- package/dist/lib/fhir-converter/index.js +53 -17
- package/dist/lib/fhir-converter/index.js.map +1 -1
- package/dist/lib/fhir-converter/types.d.ts +12 -1
- package/dist/lib/fhir-converter/types.d.ts.map +1 -1
- package/dist/lib/fhir-converter/types.js +67 -2
- package/dist/lib/fhir-converter/types.js.map +1 -1
- package/dist/lib/output.d.ts +5 -0
- package/dist/lib/output.d.ts.map +1 -1
- package/dist/lib/output.js +6 -1
- package/dist/lib/output.js.map +1 -1
- package/dist/lib/reconciler.d.ts +45 -0
- package/dist/lib/reconciler.d.ts.map +1 -0
- package/dist/lib/reconciler.js +397 -0
- package/dist/lib/reconciler.js.map +1 -0
- package/dist/shapes/checkup.shapes.ttl +10 -0
- package/package.json +1 -1
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/**
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* Cascade -> FHIR reverse converters for demographic and administrative types.
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*
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* Handles:
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* cascade:PatientProfile -> Patient
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* health:ImmunizationRecord -> Immunization
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* coverage:InsurancePlan -> Coverage
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*/
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import { NS } from './types.js';
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// ---------------------------------------------------------------------------
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// Patient
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// ---------------------------------------------------------------------------
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export function restorePatientProfile(pv, warnings) {
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const getFirst = (pred) => pv.get(pred)?.[0];
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const fhirResource = { resourceType: 'Patient' };
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const dob = getFirst(NS.cascade + 'dateOfBirth');
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if (dob)
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fhirResource.birthDate = dob;
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const sex = getFirst(NS.cascade + 'biologicalSex');
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if (sex) {
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const sexMap = { male: 'male', female: 'female', intersex: 'other' };
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fhirResource.gender = sexMap[sex] ?? 'unknown';
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}
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const marital = getFirst(NS.cascade + 'maritalStatus');
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if (marital) {
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const maritalMap = {
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single: 'S', married: 'M', divorced: 'D', widowed: 'W',
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separated: 'A', domestic_partnership: 'T',
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};
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fhirResource.maritalStatus = {
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coding: [{ code: maritalMap[marital] ?? 'UNK' }],
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text: marital,
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};
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}
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const profileId = getFirst(NS.cascade + 'profileId');
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if (profileId)
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fhirResource.id = profileId;
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for (const field of ['computedAge', 'ageGroup', 'genderIdentity']) {
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if (getFirst(NS.cascade + field)) {
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warnings.push(`Cascade field '${field}' has no FHIR Patient equivalent and was not included`);
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}
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}
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return fhirResource;
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}
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// ---------------------------------------------------------------------------
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// Immunization
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// ---------------------------------------------------------------------------
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export function restoreImmunizationRecord(pv, _warnings) {
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const getFirst = (pred) => pv.get(pred)?.[0];
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const fhirResource = {
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resourceType: 'Immunization',
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status: getFirst(NS.health + 'status') ?? 'completed',
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vaccineCode: { text: getFirst(NS.health + 'vaccineName') ?? '' },
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};
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const adminDate = getFirst(NS.health + 'administrationDate');
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if (adminDate)
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fhirResource.occurrenceDateTime = adminDate;
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const vaccineCode = getFirst(NS.health + 'vaccineCode');
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if (vaccineCode) {
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const code = vaccineCode.startsWith('CVX-') ? vaccineCode.slice(4) : vaccineCode;
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fhirResource.vaccineCode.coding = [{ system: 'http://hl7.org/fhir/sid/cvx', code }];
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}
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const manufacturer = getFirst(NS.health + 'manufacturer');
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if (manufacturer)
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fhirResource.manufacturer = { display: manufacturer };
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const lotNumber = getFirst(NS.health + 'lotNumber');
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if (lotNumber)
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fhirResource.lotNumber = lotNumber;
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const srcId = getFirst(NS.health + 'sourceRecordId');
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if (srcId)
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fhirResource.id = srcId;
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return fhirResource;
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}
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// ---------------------------------------------------------------------------
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// Coverage (Insurance)
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// ---------------------------------------------------------------------------
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export function restoreInsurancePlan(pv, _warnings) {
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const getFirst = (pred) => pv.get(pred)?.[0];
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const fhirResource = {
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resourceType: 'Coverage',
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status: 'active',
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};
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const providerName = getFirst(NS.coverage + 'providerName');
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if (providerName)
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fhirResource.payor = [{ display: providerName }];
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const memberId = getFirst(NS.coverage + 'memberId');
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if (memberId)
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fhirResource.subscriberId = memberId;
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const groupNum = getFirst(NS.coverage + 'groupNumber');
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const planName = getFirst(NS.coverage + 'planName');
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const classArr = [];
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if (groupNum)
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classArr.push({ type: { coding: [{ code: 'group' }] }, value: groupNum, name: planName });
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else if (planName)
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classArr.push({ type: { coding: [{ code: 'plan' }] }, value: planName });
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if (classArr.length > 0)
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fhirResource.class = classArr;
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const start = getFirst(NS.coverage + 'effectiveStart');
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const end = getFirst(NS.coverage + 'effectiveEnd');
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if (start || end) {
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fhirResource.period = {};
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if (start)
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fhirResource.period.start = start;
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if (end)
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fhirResource.period.end = end;
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}
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const rel = getFirst(NS.coverage + 'subscriberRelationship');
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if (rel)
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fhirResource.relationship = { coding: [{ code: rel }] };
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const srcId = getFirst(NS.health + 'sourceRecordId');
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if (srcId)
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fhirResource.id = srcId;
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return fhirResource;
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}
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//# sourceMappingURL=cascade-to-fhir-demographics.js.map
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{"version":3,"file":"cascade-to-fhir-demographics.js","sourceRoot":"","sources":["../../../src/lib/fhir-converter/cascade-to-fhir-demographics.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,EAAE,EAAE,EAAE,MAAM,YAAY,CAAC;AAKhC,8EAA8E;AAC9E,UAAU;AACV,8EAA8E;AAE9E,MAAM,UAAU,qBAAqB,CAAC,EAAM,EAAE,QAAkB;IAC9D,MAAM,QAAQ,GAAG,CAAC,IAAY,EAAE,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAErD,MAAM,YAAY,GAAiB,EAAE,YAAY,EAAE,SAAS,EAAE,CAAC;IAE/D,MAAM,GAAG,GAAG,QAAQ,CAAC,EAAE,CAAC,OAAO,GAAG,aAAa,CAAC,CAAC;IACjD,IAAI,GAAG;QAAE,YAAY,CAAC,SAAS,GAAG,GAAG,CAAC;IAEtC,MAAM,GAAG,GAAG,QAAQ,CAAC,EAAE,CAAC,OAAO,GAAG,eAAe,CAAC,CAAC;IACnD,IAAI,GAAG,EAAE,CAAC;QACR,MAAM,MAAM,GAA2B,EAAE,IAAI,EAAE,MAAM,EAAE,MAAM,EAAE,QAAQ,EAAE,QAAQ,EAAE,OAAO,EAAE,CAAC;QAC7F,YAAY,CAAC,MAAM,GAAG,MAAM,CAAC,GAAG,CAAC,IAAI,SAAS,CAAC;IACjD,CAAC;IAED,MAAM,OAAO,GAAG,QAAQ,CAAC,EAAE,CAAC,OAAO,GAAG,eAAe,CAAC,CAAC;IACvD,IAAI,OAAO,EAAE,CAAC;QACZ,MAAM,UAAU,GAA2B;YACzC,MAAM,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG,EAAE,QAAQ,EAAE,GAAG,EAAE,OAAO,EAAE,GAAG;YACtD,SAAS,EAAE,GAAG,EAAE,oBAAoB,EAAE,GAAG;SAC1C,CAAC;QACF,YAAY,CAAC,aAAa,GAAG;YAC3B,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,UAAU,CAAC,OAAO,CAAC,IAAI,KAAK,EAAE,CAAC;YAChD,IAAI,EAAE,OAAO;SACd,CAAC;IACJ,CAAC;IAED,MAAM,SAAS,GAAG,QAAQ,CAAC,EAAE,CAAC,OAAO,GAAG,WAAW,CAAC,CAAC;IACrD,IAAI,SAAS;QAAE,YAAY,CAAC,EAAE,GAAG,SAAS,CAAC;IAE3C,KAAK,MAAM,KAAK,IAAI,CAAC,aAAa,EAAE,UAAU,EAAE,gBAAgB,CAAC,EAAE,CAAC;QAClE,IAAI,QAAQ,CAAC,EAAE,CAAC,OAAO,GAAG,KAAK,CAAC,EAAE,CAAC;YACjC,QAAQ,CAAC,IAAI,CAAC,kBAAkB,KAAK,uDAAuD,CAAC,CAAC;QAChG,CAAC;IACH,CAAC;IAED,OAAO,YAAY,CAAC;AACtB,CAAC;AAED,8EAA8E;AAC9E,eAAe;AACf,8EAA8E;AAE9E,MAAM,UAAU,yBAAyB,CAAC,EAAM,EAAE,SAAmB;IACnE,MAAM,QAAQ,GAAG,CAAC,IAAY,EAAE,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAErD,MAAM,YAAY,GAAiB;QACjC,YAAY,EAAE,cAAc;QAC5B,MAAM,EAAE,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,QAAQ,CAAC,IAAI,WAAW;QACrD,WAAW,EAAE,EAAE,IAAI,EAAE,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,IAAI,EAAE,EAAE;KACjE,CAAC;IAEF,MAAM,SAAS,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,oBAAoB,CAAC,CAAC;IAC7D,IAAI,SAAS;QAAE,YAAY,CAAC,kBAAkB,GAAG,SAAS,CAAC;IAE3D,MAAM,WAAW,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,aAAa,CAAC,CAAC;IACxD,IAAI,WAAW,EAAE,CAAC;QAChB,MAAM,IAAI,GAAG,WAAW,CAAC,UAAU,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,CAAC;QACjF,YAAY,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE,MAAM,EAAE,6BAA6B,EAAE,IAAI,EAAE,CAAC,CAAC;IACtF,CAAC;IAED,MAAM,YAAY,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,cAAc,CAAC,CAAC;IAC1D,IAAI,YAAY;QAAE,YAAY,CAAC,YAAY,GAAG,EAAE,OAAO,EAAE,YAAY,EAAE,CAAC;IAExE,MAAM,SAAS,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,WAAW,CAAC,CAAC;IACpD,IAAI,SAAS;QAAE,YAAY,CAAC,SAAS,GAAG,SAAS,CAAC;IAElD,MAAM,KAAK,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,gBAAgB,CAAC,CAAC;IACrD,IAAI,KAAK;QAAE,YAAY,CAAC,EAAE,GAAG,KAAK,CAAC;IAEnC,OAAO,YAAY,CAAC;AACtB,CAAC;AAED,8EAA8E;AAC9E,uBAAuB;AACvB,8EAA8E;AAE9E,MAAM,UAAU,oBAAoB,CAAC,EAAM,EAAE,SAAmB;IAC9D,MAAM,QAAQ,GAAG,CAAC,IAAY,EAAE,EAAE,CAAC,EAAE,CAAC,GAAG,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;IAErD,MAAM,YAAY,GAAiB;QACjC,YAAY,EAAE,UAAU;QACxB,MAAM,EAAE,QAAQ;KACjB,CAAC;IAEF,MAAM,YAAY,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,cAAc,CAAC,CAAC;IAC5D,IAAI,YAAY;QAAE,YAAY,CAAC,KAAK,GAAG,CAAC,EAAE,OAAO,EAAE,YAAY,EAAE,CAAC,CAAC;IAEnE,MAAM,QAAQ,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,UAAU,CAAC,CAAC;IACpD,IAAI,QAAQ;QAAE,YAAY,CAAC,YAAY,GAAG,QAAQ,CAAC;IAEnD,MAAM,QAAQ,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,aAAa,CAAC,CAAC;IACvD,MAAM,QAAQ,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,UAAU,CAAC,CAAC;IACpD,MAAM,QAAQ,GAAU,EAAE,CAAC;IAC3B,IAAI,QAAQ;QAAE,QAAQ,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,OAAO,EAAE,CAAC,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,IAAI,EAAE,QAAQ,EAAE,CAAC,CAAC;SACnG,IAAI,QAAQ;QAAE,QAAQ,CAAC,IAAI,CAAC,EAAE,IAAI,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,EAAE,EAAE,KAAK,EAAE,QAAQ,EAAE,CAAC,CAAC;IAC5F,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC;QAAE,YAAY,CAAC,KAAK,GAAG,QAAQ,CAAC;IAEvD,MAAM,KAAK,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,gBAAgB,CAAC,CAAC;IACvD,MAAM,GAAG,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,cAAc,CAAC,CAAC;IACnD,IAAI,KAAK,IAAI,GAAG,EAAE,CAAC;QACjB,YAAY,CAAC,MAAM,GAAG,EAAE,CAAC;QACzB,IAAI,KAAK;YAAE,YAAY,CAAC,MAAM,CAAC,KAAK,GAAG,KAAK,CAAC;QAC7C,IAAI,GAAG;YAAE,YAAY,CAAC,MAAM,CAAC,GAAG,GAAG,GAAG,CAAC;IACzC,CAAC;IAED,MAAM,GAAG,GAAG,QAAQ,CAAC,EAAE,CAAC,QAAQ,GAAG,wBAAwB,CAAC,CAAC;IAC7D,IAAI,GAAG;QAAE,YAAY,CAAC,YAAY,GAAG,EAAE,MAAM,EAAE,CAAC,EAAE,IAAI,EAAE,GAAG,EAAE,CAAC,EAAE,CAAC;IAEjE,MAAM,KAAK,GAAG,QAAQ,CAAC,EAAE,CAAC,MAAM,GAAG,gBAAgB,CAAC,CAAC;IACrD,IAAI,KAAK;QAAE,YAAY,CAAC,EAAE,GAAG,KAAK,CAAC;IAEnC,OAAO,YAAY,CAAC;AACtB,CAAC"}
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@@ -1,11 +1,17 @@
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1
1
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/**
|
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2
|
-
* Cascade -> FHIR (reverse conversion).
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2
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+
* Cascade -> FHIR (reverse conversion) dispatcher.
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3
3
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*
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4
4
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* Parses Cascade Protocol Turtle using n3, identifies the resource type from
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5
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* rdf:type, and
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5
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* rdf:type, and dispatches to per-type handler functions. Each handler maps
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6
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* Cascade predicates back to FHIR R4 fields.
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6
7
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*
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7
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-
* Not all Cascade fields have FHIR equivalents
|
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8
|
+
* Not all Cascade fields have FHIR equivalents — lost fields are reported
|
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8
9
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* as warnings.
|
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10
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+
*
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11
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+
* Handlers are organized by domain:
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12
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+
* cascade-to-fhir-clinical.ts Clinical record types (medications, conditions, etc.)
|
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13
|
+
* cascade-to-fhir-demographics.ts Patient, immunization, coverage
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14
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+
* cascade-to-fhir-admin.ts Claim, ExplanationOfBenefit
|
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9
15
|
*/
|
|
10
16
|
/**
|
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11
17
|
* Convert Cascade Turtle to FHIR R4 JSON.
|
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@@ -1 +1 @@
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|
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1
|
-
{"version":3,"file":"cascade-to-fhir.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/cascade-to-fhir.ts"],"names":[],"mappings":"AAAA
|
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1
|
+
{"version":3,"file":"cascade-to-fhir.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/cascade-to-fhir.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AA+BH;;GAEG;AACH,wBAAsB,oBAAoB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC;IAClE,SAAS,EAAE,GAAG,EAAE,CAAC;IACjB,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB,CAAC,CAgGD"}
|
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@@ -1,14 +1,23 @@
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|
|
1
1
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/**
|
|
2
|
-
* Cascade -> FHIR (reverse conversion).
|
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2
|
+
* Cascade -> FHIR (reverse conversion) dispatcher.
|
|
3
3
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*
|
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4
4
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* Parses Cascade Protocol Turtle using n3, identifies the resource type from
|
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5
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-
* rdf:type, and
|
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5
|
+
* rdf:type, and dispatches to per-type handler functions. Each handler maps
|
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6
|
+
* Cascade predicates back to FHIR R4 fields.
|
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6
7
|
*
|
|
7
|
-
* Not all Cascade fields have FHIR equivalents
|
|
8
|
+
* Not all Cascade fields have FHIR equivalents — lost fields are reported
|
|
8
9
|
* as warnings.
|
|
10
|
+
*
|
|
11
|
+
* Handlers are organized by domain:
|
|
12
|
+
* cascade-to-fhir-clinical.ts Clinical record types (medications, conditions, etc.)
|
|
13
|
+
* cascade-to-fhir-demographics.ts Patient, immunization, coverage
|
|
14
|
+
* cascade-to-fhir-admin.ts Claim, ExplanationOfBenefit
|
|
9
15
|
*/
|
|
10
16
|
import { Parser } from 'n3';
|
|
11
17
|
import { NS } from './types.js';
|
|
18
|
+
import { restoreMedicationRecord, restoreConditionRecord, restoreAllergyRecord, restoreLabResultRecord, restoreVitalSign, restoreProcedure, restoreClinicalDocument, restoreEncounter, restoreLaboratoryReport, restoreMedicationAdministration, restoreImplantedDevice, restoreImagingStudy, } from './cascade-to-fhir-clinical.js';
|
|
19
|
+
import { restorePatientProfile, restoreImmunizationRecord, restoreInsurancePlan, } from './cascade-to-fhir-demographics.js';
|
|
20
|
+
import { restoreClaimRecord, restoreBenefitStatement, } from './cascade-to-fhir-admin.js';
|
|
12
21
|
/**
|
|
13
22
|
* Convert Cascade Turtle to FHIR R4 JSON.
|
|
14
23
|
*/
|
|
@@ -33,13 +42,13 @@ export async function convertCascadeToFhir(turtle) {
|
|
|
33
42
|
subjects.set(subj, []);
|
|
34
43
|
subjects.get(subj).push(q);
|
|
35
44
|
}
|
|
36
|
-
for (const [
|
|
45
|
+
for (const [subjectUri, subjectQuads] of subjects) {
|
|
37
46
|
// Find rdf:type
|
|
38
47
|
const typeQuad = subjectQuads.find(q => q.predicate.value === NS.rdf + 'type');
|
|
39
48
|
if (!typeQuad)
|
|
40
49
|
continue;
|
|
41
50
|
const rdfType = typeQuad.object.value;
|
|
42
|
-
// Build
|
|
51
|
+
// Build predicate->value map
|
|
43
52
|
const pv = new Map();
|
|
44
53
|
for (const q of subjectQuads) {
|
|
45
54
|
const pred = q.predicate.value;
|
|
@@ -47,311 +56,81 @@ export async function convertCascadeToFhir(turtle) {
|
|
|
47
56
|
pv.set(pred, []);
|
|
48
57
|
pv.get(pred).push(q.object.value);
|
|
49
58
|
}
|
|
50
|
-
|
|
59
|
+
// Dispatch to per-type handler
|
|
60
|
+
let resource = null;
|
|
51
61
|
if (rdfType === NS.health + 'MedicationRecord') {
|
|
52
|
-
|
|
53
|
-
resourceType: 'MedicationStatement',
|
|
54
|
-
status: 'active',
|
|
55
|
-
medicationCodeableConcept: { text: getFirst(NS.health + 'medicationName') ?? '' },
|
|
56
|
-
};
|
|
57
|
-
// isActive -> status
|
|
58
|
-
const isActive = getFirst(NS.health + 'isActive');
|
|
59
|
-
if (isActive === 'false')
|
|
60
|
-
fhirResource.status = 'stopped';
|
|
61
|
-
// Drug codes
|
|
62
|
-
const drugCodes = pv.get(NS.clinical + 'drugCode') ?? [];
|
|
63
|
-
const codingArr = [];
|
|
64
|
-
for (const uri of drugCodes) {
|
|
65
|
-
if (uri.startsWith(NS.rxnorm)) {
|
|
66
|
-
codingArr.push({ system: 'http://www.nlm.nih.gov/research/umls/rxnorm', code: uri.slice(NS.rxnorm.length) });
|
|
67
|
-
}
|
|
68
|
-
else if (uri.startsWith(NS.sct)) {
|
|
69
|
-
codingArr.push({ system: 'http://snomed.info/sct', code: uri.slice(NS.sct.length) });
|
|
70
|
-
}
|
|
71
|
-
}
|
|
72
|
-
if (codingArr.length > 0) {
|
|
73
|
-
fhirResource.medicationCodeableConcept.coding = codingArr;
|
|
74
|
-
}
|
|
75
|
-
// Dosage
|
|
76
|
-
const doseText = getFirst(NS.health + 'dose');
|
|
77
|
-
if (doseText) {
|
|
78
|
-
fhirResource.dosage = [{ text: doseText }];
|
|
79
|
-
}
|
|
80
|
-
// Dates
|
|
81
|
-
const startDate = getFirst(NS.health + 'startDate');
|
|
82
|
-
const endDate = getFirst(NS.health + 'endDate');
|
|
83
|
-
if (startDate || endDate) {
|
|
84
|
-
fhirResource.effectivePeriod = {};
|
|
85
|
-
if (startDate)
|
|
86
|
-
fhirResource.effectivePeriod.start = startDate;
|
|
87
|
-
if (endDate)
|
|
88
|
-
fhirResource.effectivePeriod.end = endDate;
|
|
89
|
-
}
|
|
90
|
-
// Source record ID
|
|
91
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
92
|
-
if (srcId)
|
|
93
|
-
fhirResource.id = srcId;
|
|
94
|
-
// Cascade-only fields that have no FHIR equivalent
|
|
95
|
-
const cascadeOnlyFields = [
|
|
96
|
-
NS.clinical + 'provenanceClass',
|
|
97
|
-
NS.clinical + 'clinicalIntent',
|
|
98
|
-
NS.cascade + 'schemaVersion',
|
|
99
|
-
NS.health + 'medicationClass',
|
|
100
|
-
];
|
|
101
|
-
for (const field of cascadeOnlyFields) {
|
|
102
|
-
if (getFirst(field)) {
|
|
103
|
-
const shortName = field.split('#')[1] ?? field;
|
|
104
|
-
warnings.push(`Cascade field '${shortName}' has no FHIR equivalent and was not included in output`);
|
|
105
|
-
}
|
|
106
|
-
}
|
|
107
|
-
resources.push(fhirResource);
|
|
62
|
+
resource = restoreMedicationRecord(pv, warnings);
|
|
108
63
|
}
|
|
109
64
|
else if (rdfType === NS.health + 'ConditionRecord') {
|
|
110
|
-
|
|
111
|
-
resourceType: 'Condition',
|
|
112
|
-
code: {
|
|
113
|
-
text: getFirst(NS.health + 'conditionName') ?? '',
|
|
114
|
-
},
|
|
115
|
-
};
|
|
116
|
-
// Status
|
|
117
|
-
const status = getFirst(NS.health + 'status');
|
|
118
|
-
if (status) {
|
|
119
|
-
fhirResource.clinicalStatus = {
|
|
120
|
-
coding: [{ system: 'http://terminology.hl7.org/CodeSystem/condition-clinical', code: status }],
|
|
121
|
-
};
|
|
122
|
-
}
|
|
123
|
-
// Onset
|
|
124
|
-
const onset = getFirst(NS.health + 'onsetDate');
|
|
125
|
-
if (onset)
|
|
126
|
-
fhirResource.onsetDateTime = onset;
|
|
127
|
-
// Codes
|
|
128
|
-
const codingArr = [];
|
|
129
|
-
const icd10 = pv.get(NS.health + 'icd10Code') ?? [];
|
|
130
|
-
for (const uri of icd10) {
|
|
131
|
-
codingArr.push({ system: 'http://hl7.org/fhir/sid/icd-10-cm', code: uri.startsWith(NS.icd10) ? uri.slice(NS.icd10.length) : uri });
|
|
132
|
-
}
|
|
133
|
-
const snomed = pv.get(NS.health + 'snomedCode') ?? [];
|
|
134
|
-
for (const uri of snomed) {
|
|
135
|
-
codingArr.push({ system: 'http://snomed.info/sct', code: uri.startsWith(NS.sct) ? uri.slice(NS.sct.length) : uri });
|
|
136
|
-
}
|
|
137
|
-
if (codingArr.length > 0)
|
|
138
|
-
fhirResource.code.coding = codingArr;
|
|
139
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
140
|
-
if (srcId)
|
|
141
|
-
fhirResource.id = srcId;
|
|
142
|
-
resources.push(fhirResource);
|
|
65
|
+
resource = restoreConditionRecord(pv, warnings);
|
|
143
66
|
}
|
|
144
67
|
else if (rdfType === NS.health + 'AllergyRecord') {
|
|
145
|
-
|
|
146
|
-
resourceType: 'AllergyIntolerance',
|
|
147
|
-
code: { text: getFirst(NS.health + 'allergen') ?? '' },
|
|
148
|
-
};
|
|
149
|
-
const cat = getFirst(NS.health + 'allergyCategory');
|
|
150
|
-
if (cat)
|
|
151
|
-
fhirResource.category = [cat];
|
|
152
|
-
const severity = getFirst(NS.health + 'allergySeverity');
|
|
153
|
-
const reaction = getFirst(NS.health + 'reaction');
|
|
154
|
-
if (reaction || severity) {
|
|
155
|
-
const rxn = {};
|
|
156
|
-
if (reaction)
|
|
157
|
-
rxn.manifestation = [{ text: reaction }];
|
|
158
|
-
if (severity)
|
|
159
|
-
rxn.severity = severity;
|
|
160
|
-
fhirResource.reaction = [rxn];
|
|
161
|
-
}
|
|
162
|
-
const onset = getFirst(NS.health + 'onsetDate');
|
|
163
|
-
if (onset)
|
|
164
|
-
fhirResource.onsetDateTime = onset;
|
|
165
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
166
|
-
if (srcId)
|
|
167
|
-
fhirResource.id = srcId;
|
|
168
|
-
resources.push(fhirResource);
|
|
68
|
+
resource = restoreAllergyRecord(pv, warnings);
|
|
169
69
|
}
|
|
170
70
|
else if (rdfType === NS.health + 'LabResultRecord') {
|
|
171
|
-
|
|
172
|
-
resourceType: 'Observation',
|
|
173
|
-
code: { text: getFirst(NS.health + 'testName') ?? '' },
|
|
174
|
-
category: [{ coding: [{ code: 'laboratory' }] }],
|
|
175
|
-
};
|
|
176
|
-
// LOINC code
|
|
177
|
-
const testCode = pv.get(NS.health + 'testCode') ?? [];
|
|
178
|
-
const codingArr = [];
|
|
179
|
-
for (const uri of testCode) {
|
|
180
|
-
const code = uri.startsWith(NS.loinc) ? uri.slice(NS.loinc.length) : uri;
|
|
181
|
-
codingArr.push({ system: 'http://loinc.org', code });
|
|
182
|
-
}
|
|
183
|
-
if (codingArr.length > 0)
|
|
184
|
-
fhirResource.code.coding = codingArr;
|
|
185
|
-
// Value
|
|
186
|
-
const resultVal = getFirst(NS.health + 'resultValue');
|
|
187
|
-
const resultUnit = getFirst(NS.health + 'resultUnit');
|
|
188
|
-
if (resultVal) {
|
|
189
|
-
const numVal = parseFloat(resultVal);
|
|
190
|
-
if (!isNaN(numVal)) {
|
|
191
|
-
fhirResource.valueQuantity = { value: numVal };
|
|
192
|
-
if (resultUnit)
|
|
193
|
-
fhirResource.valueQuantity.unit = resultUnit;
|
|
194
|
-
}
|
|
195
|
-
else {
|
|
196
|
-
fhirResource.valueString = resultVal;
|
|
197
|
-
}
|
|
198
|
-
}
|
|
199
|
-
// Date
|
|
200
|
-
const perfDate = getFirst(NS.health + 'performedDate');
|
|
201
|
-
if (perfDate)
|
|
202
|
-
fhirResource.effectiveDateTime = perfDate;
|
|
203
|
-
// Interpretation
|
|
204
|
-
const interp = getFirst(NS.health + 'interpretation');
|
|
205
|
-
if (interp) {
|
|
206
|
-
const revInterpMap = {
|
|
207
|
-
normal: 'N', abnormal: 'A', critical: 'HH', unknown: 'UNK',
|
|
208
|
-
};
|
|
209
|
-
fhirResource.interpretation = [{
|
|
210
|
-
coding: [{ code: revInterpMap[interp] ?? interp }],
|
|
211
|
-
}];
|
|
212
|
-
}
|
|
213
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
214
|
-
if (srcId)
|
|
215
|
-
fhirResource.id = srcId;
|
|
216
|
-
resources.push(fhirResource);
|
|
71
|
+
resource = restoreLabResultRecord(pv, warnings);
|
|
217
72
|
}
|
|
218
73
|
else if (rdfType === NS.clinical + 'VitalSign') {
|
|
219
|
-
|
|
220
|
-
resourceType: 'Observation',
|
|
221
|
-
code: {},
|
|
222
|
-
category: [{ coding: [{ system: 'http://terminology.hl7.org/CodeSystem/observation-category', code: 'vital-signs' }] }],
|
|
223
|
-
};
|
|
224
|
-
// LOINC code
|
|
225
|
-
const loincUri = getFirst(NS.clinical + 'loincCode');
|
|
226
|
-
if (loincUri) {
|
|
227
|
-
const code = loincUri.startsWith(NS.loinc) ? loincUri.slice(NS.loinc.length) : loincUri;
|
|
228
|
-
fhirResource.code.coding = [{ system: 'http://loinc.org', code }];
|
|
229
|
-
}
|
|
230
|
-
const vitalName = getFirst(NS.clinical + 'vitalTypeName');
|
|
231
|
-
if (vitalName)
|
|
232
|
-
fhirResource.code.text = vitalName;
|
|
233
|
-
// Value
|
|
234
|
-
const value = getFirst(NS.clinical + 'value');
|
|
235
|
-
const unit = getFirst(NS.clinical + 'unit');
|
|
236
|
-
if (value) {
|
|
237
|
-
fhirResource.valueQuantity = { value: parseFloat(value) };
|
|
238
|
-
if (unit)
|
|
239
|
-
fhirResource.valueQuantity.unit = unit;
|
|
240
|
-
}
|
|
241
|
-
// Date
|
|
242
|
-
const effDate = getFirst(NS.clinical + 'effectiveDate');
|
|
243
|
-
if (effDate)
|
|
244
|
-
fhirResource.effectiveDateTime = effDate;
|
|
245
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
246
|
-
if (srcId)
|
|
247
|
-
fhirResource.id = srcId;
|
|
248
|
-
// Warn about Cascade-specific fields
|
|
249
|
-
if (getFirst(NS.clinical + 'snomedCode')) {
|
|
250
|
-
warnings.push("Cascade field 'snomedCode' has no standard FHIR Observation field and was not included");
|
|
251
|
-
}
|
|
252
|
-
resources.push(fhirResource);
|
|
74
|
+
resource = restoreVitalSign(pv, warnings);
|
|
253
75
|
}
|
|
254
76
|
else if (rdfType === NS.cascade + 'PatientProfile') {
|
|
255
|
-
|
|
256
|
-
resourceType: 'Patient',
|
|
257
|
-
};
|
|
258
|
-
const dob = getFirst(NS.cascade + 'dateOfBirth');
|
|
259
|
-
if (dob)
|
|
260
|
-
fhirResource.birthDate = dob;
|
|
261
|
-
const sex = getFirst(NS.cascade + 'biologicalSex');
|
|
262
|
-
if (sex) {
|
|
263
|
-
const sexMap = { male: 'male', female: 'female', intersex: 'other' };
|
|
264
|
-
fhirResource.gender = sexMap[sex] ?? 'unknown';
|
|
265
|
-
}
|
|
266
|
-
const marital = getFirst(NS.cascade + 'maritalStatus');
|
|
267
|
-
if (marital) {
|
|
268
|
-
const maritalMap = {
|
|
269
|
-
single: 'S', married: 'M', divorced: 'D', widowed: 'W',
|
|
270
|
-
separated: 'A', domestic_partnership: 'T',
|
|
271
|
-
};
|
|
272
|
-
fhirResource.maritalStatus = {
|
|
273
|
-
coding: [{ code: maritalMap[marital] ?? 'UNK' }],
|
|
274
|
-
text: marital,
|
|
275
|
-
};
|
|
276
|
-
}
|
|
277
|
-
const profileId = getFirst(NS.cascade + 'profileId');
|
|
278
|
-
if (profileId)
|
|
279
|
-
fhirResource.id = profileId;
|
|
280
|
-
// Warn about Cascade-only fields
|
|
281
|
-
const cascadeOnly = ['computedAge', 'ageGroup', 'genderIdentity'];
|
|
282
|
-
for (const field of cascadeOnly) {
|
|
283
|
-
if (getFirst(NS.cascade + field)) {
|
|
284
|
-
warnings.push(`Cascade field '${field}' has no FHIR Patient equivalent and was not included`);
|
|
285
|
-
}
|
|
286
|
-
}
|
|
287
|
-
resources.push(fhirResource);
|
|
77
|
+
resource = restorePatientProfile(pv, warnings);
|
|
288
78
|
}
|
|
289
79
|
else if (rdfType === NS.health + 'ImmunizationRecord') {
|
|
290
|
-
|
|
291
|
-
resourceType: 'Immunization',
|
|
292
|
-
status: getFirst(NS.health + 'status') ?? 'completed',
|
|
293
|
-
vaccineCode: { text: getFirst(NS.health + 'vaccineName') ?? '' },
|
|
294
|
-
};
|
|
295
|
-
const adminDate = getFirst(NS.health + 'administrationDate');
|
|
296
|
-
if (adminDate)
|
|
297
|
-
fhirResource.occurrenceDateTime = adminDate;
|
|
298
|
-
const vaccineCode = getFirst(NS.health + 'vaccineCode');
|
|
299
|
-
if (vaccineCode) {
|
|
300
|
-
// Strip "CVX-" prefix
|
|
301
|
-
const code = vaccineCode.startsWith('CVX-') ? vaccineCode.slice(4) : vaccineCode;
|
|
302
|
-
fhirResource.vaccineCode.coding = [{ system: 'http://hl7.org/fhir/sid/cvx', code }];
|
|
303
|
-
}
|
|
304
|
-
const manufacturer = getFirst(NS.health + 'manufacturer');
|
|
305
|
-
if (manufacturer)
|
|
306
|
-
fhirResource.manufacturer = { display: manufacturer };
|
|
307
|
-
const lotNumber = getFirst(NS.health + 'lotNumber');
|
|
308
|
-
if (lotNumber)
|
|
309
|
-
fhirResource.lotNumber = lotNumber;
|
|
310
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
311
|
-
if (srcId)
|
|
312
|
-
fhirResource.id = srcId;
|
|
313
|
-
resources.push(fhirResource);
|
|
80
|
+
resource = restoreImmunizationRecord(pv, warnings);
|
|
314
81
|
}
|
|
315
82
|
else if (rdfType === NS.coverage + 'InsurancePlan') {
|
|
316
|
-
|
|
317
|
-
|
|
318
|
-
|
|
319
|
-
|
|
320
|
-
|
|
321
|
-
|
|
322
|
-
|
|
323
|
-
|
|
324
|
-
|
|
325
|
-
|
|
326
|
-
|
|
327
|
-
|
|
328
|
-
|
|
329
|
-
|
|
330
|
-
|
|
331
|
-
|
|
332
|
-
|
|
333
|
-
|
|
334
|
-
|
|
335
|
-
|
|
336
|
-
|
|
337
|
-
|
|
338
|
-
|
|
339
|
-
|
|
340
|
-
|
|
341
|
-
|
|
342
|
-
|
|
83
|
+
resource = restoreInsurancePlan(pv, warnings);
|
|
84
|
+
}
|
|
85
|
+
else if (rdfType === NS.clinical + 'Procedure') {
|
|
86
|
+
resource = restoreProcedure(pv, warnings);
|
|
87
|
+
}
|
|
88
|
+
else if (rdfType === NS.clinical + 'ClinicalDocument') {
|
|
89
|
+
resource = restoreClinicalDocument(pv, warnings);
|
|
90
|
+
}
|
|
91
|
+
else if (rdfType === NS.clinical + 'Encounter') {
|
|
92
|
+
resource = restoreEncounter(pv, warnings);
|
|
93
|
+
}
|
|
94
|
+
else if (rdfType === NS.clinical + 'LaboratoryReport') {
|
|
95
|
+
resource = restoreLaboratoryReport(pv, warnings);
|
|
96
|
+
}
|
|
97
|
+
else if (rdfType === NS.clinical + 'MedicationAdministration') {
|
|
98
|
+
resource = restoreMedicationAdministration(pv, warnings);
|
|
99
|
+
}
|
|
100
|
+
else if (rdfType === NS.clinical + 'ImplantedDevice') {
|
|
101
|
+
resource = restoreImplantedDevice(pv, warnings);
|
|
102
|
+
}
|
|
103
|
+
else if (rdfType === NS.clinical + 'ImagingStudy') {
|
|
104
|
+
resource = restoreImagingStudy(pv, warnings);
|
|
105
|
+
}
|
|
106
|
+
else if (rdfType === NS.coverage + 'ClaimRecord') {
|
|
107
|
+
resource = restoreClaimRecord(pv, warnings);
|
|
108
|
+
}
|
|
109
|
+
else if (rdfType === NS.coverage + 'BenefitStatement') {
|
|
110
|
+
resource = restoreBenefitStatement(pv, warnings);
|
|
111
|
+
}
|
|
112
|
+
else if (pv.get(NS.cascade + 'layerPromotionStatus')?.[0] === NS.cascade + 'PendingLayerTwoPromotion') {
|
|
113
|
+
// Layer 1 passthrough — restore original FHIR JSON verbatim
|
|
114
|
+
const fhirJson = pv.get(NS.cascade + 'fhirJson')?.[0];
|
|
115
|
+
if (fhirJson) {
|
|
116
|
+
try {
|
|
117
|
+
resources.push(JSON.parse(fhirJson));
|
|
118
|
+
}
|
|
119
|
+
catch {
|
|
120
|
+
warnings.push(`Failed to parse passthrough FHIR JSON for subject: ${subjectUri}`);
|
|
121
|
+
}
|
|
122
|
+
}
|
|
123
|
+
else {
|
|
124
|
+
const resourceType = pv.get(NS.cascade + 'fhirResourceType')?.[0] ?? 'Unknown';
|
|
125
|
+
warnings.push(`Passthrough record for ${resourceType} has no cascade:fhirJson — cannot restore (minimal mode?)`);
|
|
343
126
|
}
|
|
344
|
-
|
|
345
|
-
if (rel)
|
|
346
|
-
fhirResource.relationship = { coding: [{ code: rel }] };
|
|
347
|
-
const srcId = getFirst(NS.health + 'sourceRecordId');
|
|
348
|
-
if (srcId)
|
|
349
|
-
fhirResource.id = srcId;
|
|
350
|
-
resources.push(fhirResource);
|
|
127
|
+
continue; // Already pushed (or warned); skip the push below
|
|
351
128
|
}
|
|
352
129
|
else {
|
|
353
130
|
warnings.push(`Unknown Cascade RDF type: ${rdfType}`);
|
|
354
131
|
}
|
|
132
|
+
if (resource)
|
|
133
|
+
resources.push(resource);
|
|
355
134
|
}
|
|
356
135
|
return { resources, warnings };
|
|
357
136
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
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+
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|
|
@@ -0,0 +1,16 @@
|
|
|
1
|
+
/**
|
|
2
|
+
* FHIR -> Cascade converters for administrative/financial types.
|
|
3
|
+
*
|
|
4
|
+
* Converts:
|
|
5
|
+
* - Claim -> coverage:ClaimRecord
|
|
6
|
+
* - ExplanationOfBenefit -> coverage:BenefitStatement
|
|
7
|
+
*/
|
|
8
|
+
import type { Quad } from 'n3';
|
|
9
|
+
import { type ConversionResult } from './types.js';
|
|
10
|
+
export declare function convertClaim(resource: any): ConversionResult & {
|
|
11
|
+
_quads: Quad[];
|
|
12
|
+
};
|
|
13
|
+
export declare function convertExplanationOfBenefit(resource: any): ConversionResult & {
|
|
14
|
+
_quads: Quad[];
|
|
15
|
+
};
|
|
16
|
+
//# sourceMappingURL=converters-clinical-admin.d.ts.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
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|