@the-cascade-protocol/cli 0.2.4 → 0.3.0

package/dist/lib/fhir-converter/converters-demographics.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"converters-demographics.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/converters-demographics.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,IAAI,CAAC;AAE/B,OAAO,EACL,KAAK,gBAAgB,EAYtB,MAAM,YAAY,CAAC;AAMpB,wBAAgB,cAAc,CAAC,QAAQ,EAAE,GAAG,GAAG,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CA4EnF;AAMD,wBAAgB,mBAAmB,CAAC,QAAQ,EAAE,GAAG,GAAG,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CA4ExF;AAMD,wBAAgB,eAAe,CAAC,QAAQ,EAAE,GAAG,GAAG,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CA2EpF"}

package/dist/lib/fhir-converter/converters-demographics.js

@@ -6,14 +6,13 @@
  *   - Immunization -> health:ImmunizationRecord
  *   - Coverage -> coverage:InsurancePlan
  */
-import { randomUUID } from 'node:crypto';
-import { NS, extractCodings, codeableConceptText, tripleStr, tripleInt, tripleType, tripleDateTime, tripleDate, commonTriples, quadsToJsonLd, } from './types.js';
+import { NS, extractCodings, codeableConceptText, tripleStr, tripleInt, tripleType, tripleDateTime, tripleDate, commonTriples, quadsToJsonLd, mintSubjectUri, } from './types.js';
 // ---------------------------------------------------------------------------
 // Patient converter
 // ---------------------------------------------------------------------------
 export function convertPatient(resource) {
     const warnings = [];
-    const subjectUri = `urn:uuid:${randomUUID()}`;
+    const subjectUri = mintSubjectUri(resource);
     const quads = [];
     quads.push(tripleType(subjectUri, NS.cascade + 'PatientProfile'));
     quads.push(...commonTriples(subjectUri));
@@ -95,7 +94,7 @@ export function convertPatient(resource) {
 // ---------------------------------------------------------------------------
 export function convertImmunization(resource) {
     const warnings = [];
-    const subjectUri = `urn:uuid:${randomUUID()}`;
+    const subjectUri = mintSubjectUri(resource);
     const quads = [];
     quads.push(tripleType(subjectUri, NS.health + 'ImmunizationRecord'));
     quads.push(...commonTriples(subjectUri));
@@ -165,7 +164,7 @@ export function convertImmunization(resource) {
 // ---------------------------------------------------------------------------
 export function convertCoverage(resource) {
     const warnings = [];
-    const subjectUri = `urn:uuid:${randomUUID()}`;
+    const subjectUri = mintSubjectUri(resource);
     const quads = [];
     quads.push(tripleType(subjectUri, NS.coverage + 'InsurancePlan'));
     quads.push(...commonTriples(subjectUri));

package/dist/lib/fhir-converter/converters-demographics.js.map

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package/dist/lib/fhir-converter/converters-passthrough.d.ts

@@ -0,0 +1,29 @@
+/**
+ * Layer 1 FHIR passthrough converter.
+ *
+ * For any FHIR resource type that doesn't have a full Layer 2 mapping,
+ * preserves the original FHIR JSON inline for lossless round-trip export.
+ *
+ * Modes:
+ *   full (default) — stores complete FHIR JSON in cascade:fhirJson; round-trip export supported
+ *   minimal        — omits cascade:fhirJson; round-trip export not supported; smaller output
+ */
+import type { Quad } from 'n3';
+import { type ConversionResult } from './types.js';
+/**
+ * FHIR resource types that are intentionally excluded from conversion.
+ * These are never converted or passed through — they are logged in the
+ * import manifest with a documented reason and return null.
+ */
+export declare const EXCLUDED_TYPES: Set<string>;
+export declare const EXCLUDED_REASONS: Record<string, string>;
+/**
+ * Convert any unmapped FHIR resource to a Layer 1 passthrough record.
+ *
+ * @param resource  The FHIR resource object
+ * @param minimal   If true, omits cascade:fhirJson (smaller output, no round-trip)
+ */
+export declare function convertFhirPassthrough(resource: any, minimal?: boolean): ConversionResult & {
+    _quads: Quad[];
+};
+//# sourceMappingURL=converters-passthrough.d.ts.map

package/dist/lib/fhir-converter/converters-passthrough.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"converters-passthrough.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/converters-passthrough.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,IAAI,CAAC;AAE/B,OAAO,EACL,KAAK,gBAAgB,EAStB,MAAM,YAAY,CAAC;AAEpB;;;;GAIG;AACH,eAAO,MAAM,cAAc,aAMzB,CAAC;AAEH,eAAO,MAAM,gBAAgB,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAMnD,CAAC;AAEF;;;;;GAKG;AACH,wBAAgB,sBAAsB,CAAC,QAAQ,EAAE,GAAG,EAAE,OAAO,UAAQ,GAAG,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CAsD5G"}

package/dist/lib/fhir-converter/converters-passthrough.js

@@ -0,0 +1,86 @@
+/**
+ * Layer 1 FHIR passthrough converter.
+ *
+ * For any FHIR resource type that doesn't have a full Layer 2 mapping,
+ * preserves the original FHIR JSON inline for lossless round-trip export.
+ *
+ * Modes:
+ *   full (default) — stores complete FHIR JSON in cascade:fhirJson; round-trip export supported
+ *   minimal        — omits cascade:fhirJson; round-trip export not supported; smaller output
+ */
+import { NS, tripleStr, tripleRef, tripleType, tripleDateTime, commonTriples, quadsToJsonLd, mintSubjectUri, } from './types.js';
+/**
+ * FHIR resource types that are intentionally excluded from conversion.
+ * These are never converted or passed through — they are logged in the
+ * import manifest with a documented reason and return null.
+ */
+export const EXCLUDED_TYPES = new Set([
+    'SupplyDelivery', // Logistics artifact — no patient health value
+    'CareTeam', // Personnel registry — captured via encounter provenance
+    'CarePlan', // Complex graph — deferred to future phase
+    'Provenance', // FHIR's own provenance artifacts — Cascade uses PROV-O natively
+    'Medication', // Standalone drug definition — meaning is in MedicationRequest/Statement
+]);
+export const EXCLUDED_REASONS = {
+    SupplyDelivery: 'Logistics artifact (delivery of physical supplies). No patient health value.',
+    CareTeam: 'Personnel registry. Care team context is captured via encounter provenance.',
+    CarePlan: 'Structured care plans are complex graph objects. Deferred to future phase.',
+    Provenance: "FHIR's own provenance artifacts. Cascade uses PROV-O natively.",
+    Medication: 'Standalone medication definitional resources. Clinical meaning is in MedicationRequest/Statement.',
+};
+/**
+ * Convert any unmapped FHIR resource to a Layer 1 passthrough record.
+ *
+ * @param resource  The FHIR resource object
+ * @param minimal   If true, omits cascade:fhirJson (smaller output, no round-trip)
+ */
+export function convertFhirPassthrough(resource, minimal = false) {
+    const warnings = [];
+    const resourceType = resource.resourceType ?? 'Unknown';
+    const subjectUri = mintSubjectUri(resource);
+    const quads = [];
+    quads.push(tripleType(subjectUri, NS.fhir + resourceType));
+    quads.push(...commonTriples(subjectUri));
+    // Layer promotion status — pending Layer 2 mapping
+    quads.push(tripleRef(subjectUri, NS.cascade + 'layerPromotionStatus', NS.cascade + 'PendingLayerTwoPromotion'));
+    // Resource type string for filtering/display
+    quads.push(tripleStr(subjectUri, NS.cascade + 'fhirResourceType', resourceType));
+    // Minimal projection triples
+    if (resource.id) {
+        quads.push(tripleStr(subjectUri, NS.clinical + 'sourceRecordId', resource.id));
+    }
+    // Best-effort date extraction
+    const dateCandidate = resource.effectiveDateTime
+        ?? resource.date
+        ?? resource.period?.start
+        ?? resource.created
+        ?? resource.authoredOn
+        ?? resource.occurrenceDateTime
+        ?? resource.recordedDate;
+    if (dateCandidate) {
+        try {
+            quads.push(tripleDateTime(subjectUri, NS.cascade + 'sourceRecordDate', dateCandidate));
+        }
+        catch {
+            // Skip if date is unparseable
+        }
+    }
+    if (minimal) {
+        warnings.push(`${resourceType} preserved as Layer 1 passthrough (minimal mode) — round-trip export not supported`);
+    }
+    else {
+        // Store complete FHIR JSON for lossless round-trip
+        quads.push(tripleStr(subjectUri, NS.cascade + 'fhirJson', JSON.stringify(resource)));
+        warnings.push(`${resourceType} preserved as Layer 1 passthrough — no Layer 2 mapping yet`);
+    }
+    const cascadeType = minimal ? `fhir-minimal:${resourceType}` : `fhir:${resourceType}`;
+    return {
+        turtle: '',
+        jsonld: quadsToJsonLd(quads, cascadeType),
+        warnings,
+        resourceType,
+        cascadeType,
+        _quads: quads,
+    };
+}
+//# sourceMappingURL=converters-passthrough.js.map

package/dist/lib/fhir-converter/converters-passthrough.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"converters-passthrough.js","sourceRoot":"","sources":["../../../src/lib/fhir-converter/converters-passthrough.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAIH,OAAO,EAEL,EAAE,EACF,SAAS,EACT,SAAS,EACT,UAAU,EACV,cAAc,EACd,aAAa,EACb,aAAa,EACb,cAAc,GACf,MAAM,YAAY,CAAC;AAEpB;;;;GAIG;AACH,MAAM,CAAC,MAAM,cAAc,GAAG,IAAI,GAAG,CAAC;IACpC,gBAAgB,EAAI,+CAA+C;IACnE,UAAU,EAAU,yDAAyD;IAC7E,UAAU,EAAU,2CAA2C;IAC/D,YAAY,EAAQ,iEAAiE;IACrF,YAAY,EAAQ,yEAAyE;CAC9F,CAAC,CAAC;AAEH,MAAM,CAAC,MAAM,gBAAgB,GAA2B;IACtD,cAAc,EAAE,8EAA8E;IAC9F,QAAQ,EAAE,6EAA6E;IACvF,QAAQ,EAAE,4EAA4E;IACtF,UAAU,EAAE,gEAAgE;IAC5E,UAAU,EAAE,mGAAmG;CAChH,CAAC;AAEF;;;;;GAKG;AACH,MAAM,UAAU,sBAAsB,CAAC,QAAa,EAAE,OAAO,GAAG,KAAK;IACnE,MAAM,QAAQ,GAAa,EAAE,CAAC;IAC9B,MAAM,YAAY,GAAG,QAAQ,CAAC,YAAsB,IAAI,SAAS,CAAC;IAClE,MAAM,UAAU,GAAG,cAAc,CAAC,QAAQ,CAAC,CAAC;IAC5C,MAAM,KAAK,GAAW,EAAE,CAAC;IAEzB,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,UAAU,EAAE,EAAE,CAAC,IAAI,GAAG,YAAY,CAAC,CAAC,CAAC;IAC3D,KAAK,CAAC,IAAI,CAAC,GAAG,aAAa,CAAC,UAAU,CAAC,CAAC,CAAC;IAEzC,mDAAmD;IACnD,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,CAAC,OAAO,GAAG,sBAAsB,EAAE,EAAE,CAAC,OAAO,GAAG,0BAA0B,CAAC,CAAC,CAAC;IAEhH,6CAA6C;IAC7C,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,CAAC,OAAO,GAAG,kBAAkB,EAAE,YAAY,CAAC,CAAC,CAAC;IAEjF,6BAA6B;IAC7B,IAAI,QAAQ,CAAC,EAAE,EAAE,CAAC;QAChB,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,CAAC,QAAQ,GAAG,gBAAgB,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;IACjF,CAAC;IAED,8BAA8B;IAC9B,MAAM,aAAa,GAAG,QAAQ,CAAC,iBAAiB;WAC3C,QAAQ,CAAC,IAAI;WACb,QAAQ,CAAC,MAAM,EAAE,KAAK;WACtB,QAAQ,CAAC,OAAO;WAChB,QAAQ,CAAC,UAAU;WACnB,QAAQ,CAAC,kBAAkB;WAC3B,QAAQ,CAAC,YAAY,CAAC;IAC3B,IAAI,aAAa,EAAE,CAAC;QAClB,IAAI,CAAC;YACH,KAAK,CAAC,IAAI,CAAC,cAAc,CAAC,UAAU,EAAE,EAAE,CAAC,OAAO,GAAG,kBAAkB,EAAE,aAAa,CAAC,CAAC,CAAC;QACzF,CAAC;QAAC,MAAM,CAAC;YACP,8BAA8B;QAChC,CAAC;IACH,CAAC;IAED,IAAI,OAAO,EAAE,CAAC;QACZ,QAAQ,CAAC,IAAI,CAAC,GAAG,YAAY,oFAAoF,CAAC,CAAC;IACrH,CAAC;SAAM,CAAC;QACN,mDAAmD;QACnD,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,UAAU,EAAE,EAAE,CAAC,OAAO,GAAG,UAAU,EAAE,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;QACrF,QAAQ,CAAC,IAAI,CAAC,GAAG,YAAY,4DAA4D,CAAC,CAAC;IAC7F,CAAC;IAED,MAAM,WAAW,GAAG,OAAO,CAAC,CAAC,CAAC,gBAAgB,YAAY,EAAE,CAAC,CAAC,CAAC,QAAQ,YAAY,EAAE,CAAC;IAEtF,OAAO;QACL,MAAM,EAAE,EAAE;QACV,MAAM,EAAE,aAAa,CAAC,KAAK,EAAE,WAAW,CAAC;QACzC,QAAQ;QACR,YAAY;QACZ,WAAW;QACX,MAAM,EAAE,KAAK;KACd,CAAC;AACJ,CAAC"}

package/dist/lib/fhir-converter/fhir-to-cascade.d.ts

@@ -5,13 +5,17 @@
  * provides the main public conversion functions.
  *
  * Individual converters are in:
- *   - converters-clinical.ts     Medications, conditions, allergies, observations
- *   - converters-demographics.ts Patient, immunization, coverage
+ *   - converters-clinical.ts      Medications, conditions, allergies, observations,
+ *                                  procedures, encounters, clinical documents, lab reports,
+ *                                  medication admin, devices, imaging studies
+ *   - converters-demographics.ts  Patient, immunization, coverage
+ *   - converters-clinical-admin.ts Claim, ExplanationOfBenefit
+ *   - converters-passthrough.ts   Layer 1 FHIR passthrough for unknown types
  */
 import type { Quad } from 'n3';
 import { type ConversionResult } from './types.js';
-export declare function convertFhirResourceToQuads(fhirResource: any): (ConversionResult & {
+export declare function convertFhirResourceToQuads(fhirResource: any, passthroughMinimal?: boolean): (ConversionResult & {
     _quads: Quad[];
 }) | null;
-export declare function convertFhirToCascade(fhirResource: any): Promise<ConversionResult>;
+export declare function convertFhirToCascade(fhirResource: any, passthroughMinimal?: boolean): Promise<ConversionResult>;
 //# sourceMappingURL=fhir-to-cascade.d.ts.map

package/dist/lib/fhir-converter/fhir-to-cascade.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"fhir-to-cascade.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/fhir-to-cascade.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,IAAI,CAAC;AAE/B,OAAO,EAAE,KAAK,gBAAgB,EAAiB,MAAM,YAAY,CAAC;AAqBlE,wBAAgB,0BAA0B,CAAC,YAAY,EAAE,GAAG,GAAG,CAAC,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CAAC,GAAG,IAAI,CA0B5G;AAED,wBAAsB,oBAAoB,CAAC,YAAY,EAAE,GAAG,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAmBvF"}
+{"version":3,"file":"fhir-to-cascade.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/fhir-to-cascade.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAEH,OAAO,KAAK,EAAE,IAAI,EAAE,MAAM,IAAI,CAAC;AAE/B,OAAO,EAAE,KAAK,gBAAgB,EAAiB,MAAM,YAAY,CAAC;AAsClE,wBAAgB,0BAA0B,CAAC,YAAY,EAAE,GAAG,EAAE,kBAAkB,UAAQ,GAAG,CAAC,gBAAgB,GAAG;IAAE,MAAM,EAAE,IAAI,EAAE,CAAA;CAAE,CAAC,GAAG,IAAI,CAkDxI;AAED,wBAAsB,oBAAoB,CAAC,YAAY,EAAE,GAAG,EAAE,kBAAkB,UAAQ,GAAG,OAAO,CAAC,gBAAgB,CAAC,CAoBnH"}

package/dist/lib/fhir-converter/fhir-to-cascade.js

@@ -5,16 +5,22 @@
  * provides the main public conversion functions.
  *
  * Individual converters are in:
- *   - converters-clinical.ts     Medications, conditions, allergies, observations
- *   - converters-demographics.ts Patient, immunization, coverage
+ *   - converters-clinical.ts      Medications, conditions, allergies, observations,
+ *                                  procedures, encounters, clinical documents, lab reports,
+ *                                  medication admin, devices, imaging studies
+ *   - converters-demographics.ts  Patient, immunization, coverage
+ *   - converters-clinical-admin.ts Claim, ExplanationOfBenefit
+ *   - converters-passthrough.ts   Layer 1 FHIR passthrough for unknown types
  */
 import { quadsToTurtle } from './types.js';
-import { convertMedicationStatement, convertCondition, convertAllergyIntolerance, isVitalSignObservation, convertObservationLab, convertObservationVital, } from './converters-clinical.js';
+import { convertMedicationStatement, convertCondition, convertAllergyIntolerance, isVitalSignObservation, convertObservationLab, convertObservationVital, convertProcedure, convertClinicalDocument, convertEncounter, convertLaboratoryReport, convertMedicationAdministration, convertDevice, convertImagingStudy, } from './converters-clinical.js';
 import { convertPatient, convertImmunization, convertCoverage, } from './converters-demographics.js';
+import { convertClaim, convertExplanationOfBenefit, } from './converters-clinical-admin.js';
+import { convertFhirPassthrough, EXCLUDED_TYPES, } from './converters-passthrough.js';
 // ---------------------------------------------------------------------------
 // Main dispatcher: single FHIR resource -> Cascade
 // ---------------------------------------------------------------------------
-export function convertFhirResourceToQuads(fhirResource) {
+export function convertFhirResourceToQuads(fhirResource, passthroughMinimal = false) {
     const resourceType = fhirResource?.resourceType;
     if (!resourceType)
         return null;
@@ -37,17 +43,42 @@ export function convertFhirResourceToQuads(fhirResource) {
             return convertImmunization(fhirResource);
         case 'Coverage':
             return convertCoverage(fhirResource);
-        default:
-            return null;
+        case 'Procedure':
+            return convertProcedure(fhirResource);
+        case 'DocumentReference':
+            return convertClinicalDocument(fhirResource);
+        case 'Encounter':
+            return convertEncounter(fhirResource);
+        case 'DiagnosticReport':
+            return convertLaboratoryReport(fhirResource);
+        case 'MedicationAdministration':
+            return convertMedicationAdministration(fhirResource);
+        case 'Device':
+            return convertDevice(fhirResource);
+        case 'ImagingStudy':
+            return convertImagingStudy(fhirResource);
+        case 'Claim':
+            return convertClaim(fhirResource);
+        case 'ExplanationOfBenefit':
+            return convertExplanationOfBenefit(fhirResource);
+        default: {
+            if (EXCLUDED_TYPES.has(resourceType)) {
+                // Intentionally excluded — log to manifest as excluded, return null
+                return null;
+            }
+            // Layer 1 passthrough for everything else
+            return convertFhirPassthrough(fhirResource, passthroughMinimal);
+        }
     }
 }
-export async function convertFhirToCascade(fhirResource) {
-    const result = convertFhirResourceToQuads(fhirResource);
+export async function convertFhirToCascade(fhirResource, passthroughMinimal = false) {
+    const result = convertFhirResourceToQuads(fhirResource, passthroughMinimal);
     if (!result) {
+        const resourceType = fhirResource?.resourceType ?? 'unknown';
         return {
             turtle: '',
-            warnings: [`Unsupported FHIR resource type: ${fhirResource?.resourceType ?? 'unknown'}`],
-            resourceType: fhirResource?.resourceType ?? 'unknown',
+            warnings: [`Unsupported FHIR resource type: ${resourceType}`],
+            resourceType,
             cascadeType: 'unknown',
         };
     }

package/dist/lib/fhir-converter/fhir-to-cascade.js.map

@@ -1 +1 @@
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+{"version":3,"file":"fhir-to-cascade.js","sourceRoot":"","sources":["../../../src/lib/fhir-converter/fhir-to-cascade.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;GAaG;AAIH,OAAO,EAAyB,aAAa,EAAE,MAAM,YAAY,CAAC;AAElE,OAAO,EACL,0BAA0B,EAC1B,gBAAgB,EAChB,yBAAyB,EACzB,sBAAsB,EACtB,qBAAqB,EACrB,uBAAuB,EACvB,gBAAgB,EAChB,uBAAuB,EACvB,gBAAgB,EAChB,uBAAuB,EACvB,+BAA+B,EAC/B,aAAa,EACb,mBAAmB,GACpB,MAAM,0BAA0B,CAAC;AAElC,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,eAAe,GAChB,MAAM,8BAA8B,CAAC;AAEtC,OAAO,EACL,YAAY,EACZ,2BAA2B,GAC5B,MAAM,gCAAgC,CAAC;AAExC,OAAO,EACL,sBAAsB,EACtB,cAAc,GACf,MAAM,6BAA6B,CAAC;AAErC,8EAA8E;AAC9E,mDAAmD;AACnD,8EAA8E;AAE9E,MAAM,UAAU,0BAA0B,CAAC,YAAiB,EAAE,kBAAkB,GAAG,KAAK;IACtF,MAAM,YAAY,GAAG,YAAY,EAAE,YAAkC,CAAC;IACtE,IAAI,CAAC,YAAY;QAAE,OAAO,IAAI,CAAC;IAE/B,QAAQ,YAAY,EAAE,CAAC;QACrB,KAAK,qBAAqB,CAAC;QAC3B,KAAK,mBAAmB;YACtB,OAAO,0BAA0B,CAAC,YAAY,CAAC,CAAC;QAClD,KAAK,WAAW;YACd,OAAO,gBAAgB,CAAC,YAAY,CAAC,CAAC;QACxC,KAAK,oBAAoB;YACvB,OAAO,yBAAyB,CAAC,YAAY,CAAC,CAAC;QACjD,KAAK,aAAa;YAChB,IAAI,sBAAsB,CAAC,YAAY,CAAC,EAAE,CAAC;gBACzC,OAAO,uBAAuB,CAAC,YAAY,CAAC,CAAC;YAC/C,CAAC;YACD,OAAO,qBAAqB,CAAC,YAAY,CAAC,CAAC;QAC7C,KAAK,SAAS;YACZ,OAAO,cAAc,CAAC,YAAY,CAAC,CAAC;QACtC,KAAK,cAAc;YACjB,OAAO,mBAAmB,CAAC,YAAY,CAAC,CAAC;QAC3C,KAAK,UAAU;YACb,OAAO,eAAe,CAAC,YAAY,CAAC,CAAC;QACvC,KAAK,WAAW;YACd,OAAO,gBAAgB,CAAC,YAAY,CAAC,CAAC;QACxC,KAAK,mBAAmB;YACtB,OAAO,uBAAuB,CAAC,YAAY,CAAC,CAAC;QAC/C,KAAK,WAAW;YACd,OAAO,gBAAgB,CAAC,YAAY,CAAC,CAAC;QACxC,KAAK,kBAAkB;YACrB,OAAO,uBAAuB,CAAC,YAAY,CAAC,CAAC;QAC/C,KAAK,0BAA0B;YAC7B,OAAO,+BAA+B,CAAC,YAAY,CAAC,CAAC;QACvD,KAAK,QAAQ;YACX,OAAO,aAAa,CAAC,YAAY,CAAC,CAAC;QACrC,KAAK,cAAc;YACjB,OAAO,mBAAmB,CAAC,YAAY,CAAC,CAAC;QAC3C,KAAK,OAAO;YACV,OAAO,YAAY,CAAC,YAAY,CAAC,CAAC;QACpC,KAAK,sBAAsB;YACzB,OAAO,2BAA2B,CAAC,YAAY,CAAC,CAAC;QACnD,OAAO,CAAC,CAAC,CAAC;YACR,IAAI,cAAc,CAAC,GAAG,CAAC,YAAY,CAAC,EAAE,CAAC;gBACrC,oEAAoE;gBACpE,OAAO,IAAI,CAAC;YACd,CAAC;YACD,0CAA0C;YAC1C,OAAO,sBAAsB,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC;QAClE,CAAC;IACH,CAAC;AACH,CAAC;AAED,MAAM,CAAC,KAAK,UAAU,oBAAoB,CAAC,YAAiB,EAAE,kBAAkB,GAAG,KAAK;IACtF,MAAM,MAAM,GAAG,0BAA0B,CAAC,YAAY,EAAE,kBAAkB,CAAC,CAAC;IAC5E,IAAI,CAAC,MAAM,EAAE,CAAC;QACZ,MAAM,YAAY,GAAG,YAAY,EAAE,YAAY,IAAI,SAAS,CAAC;QAC7D,OAAO;YACL,MAAM,EAAE,EAAE;YACV,QAAQ,EAAE,CAAC,mCAAmC,YAAY,EAAE,CAAC;YAC7D,YAAY;YACZ,WAAW,EAAE,SAAS;SACvB,CAAC;IACJ,CAAC;IAED,MAAM,MAAM,GAAG,MAAM,aAAa,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;IAClD,OAAO;QACL,MAAM;QACN,MAAM,EAAE,MAAM,CAAC,MAAM;QACrB,QAAQ,EAAE,MAAM,CAAC,QAAQ;QACzB,YAAY,EAAE,MAAM,CAAC,YAAY;QACjC,WAAW,EAAE,MAAM,CAAC,WAAW;KAChC,CAAC;AACJ,CAAC"}

package/dist/lib/fhir-converter/import-manifest.d.ts

@@ -0,0 +1,40 @@
+/**
+ * Import manifest types and builder for FHIR -> Cascade conversion.
+ *
+ * The manifest is built in the CLI command layer (not in the converter library)
+ * after BatchConversionResult is returned. It records what was converted,
+ * what used Layer 1 passthrough, and what was intentionally excluded.
+ */
+import type { BatchConversionResult } from './types.js';
+export interface ManifestEntry {
+    count: number;
+    strategy: 'mapped' | 'passthrough' | 'passthrough-minimal' | 'excluded';
+    reason?: string;
+}
+export interface ImportManifest {
+    sourceFile: string;
+    sourceSystem: string;
+    convertedAt: string;
+    summary: {
+        total: number;
+        fullyMapped: number;
+        passthrough: number;
+        excluded: number;
+    };
+    byType: Record<string, ManifestEntry>;
+}
+/**
+ * Build an ImportManifest from a BatchConversionResult.
+ *
+ * Passthrough detection uses cascadeType prefix only:
+ *   - 'fhir:*'          -> full passthrough (fhirJson stored, round-trip supported)
+ *   - 'fhir-minimal:*'  -> minimal passthrough (no fhirJson, round-trip not supported)
+ * All other cascadeType values are Layer 2 mapped records.
+ *
+ * @param result        The conversion result from the converter library
+ * @param sourceFile    The source FHIR file path
+ * @param sourceSystem  The --source-system CLI argument
+ * @param excludedTypes Map of resource types that were excluded with their counts
+ */
+export declare function buildImportManifest(result: BatchConversionResult, sourceFile: string, sourceSystem: string, excludedTypes: Record<string, number>): ImportManifest;
+//# sourceMappingURL=import-manifest.d.ts.map

package/dist/lib/fhir-converter/import-manifest.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"import-manifest.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/import-manifest.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAEH,OAAO,KAAK,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AAGxD,MAAM,WAAW,aAAa;IAC5B,KAAK,EAAE,MAAM,CAAC;IACd,QAAQ,EAAE,QAAQ,GAAG,aAAa,GAAG,qBAAqB,GAAG,UAAU,CAAC;IACxE,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,cAAc;IAC7B,UAAU,EAAE,MAAM,CAAC;IACnB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,EAAE;QACP,KAAK,EAAE,MAAM,CAAC;QACd,WAAW,EAAE,MAAM,CAAC;QACpB,WAAW,EAAE,MAAM,CAAC;QACpB,QAAQ,EAAE,MAAM,CAAC;KAClB,CAAC;IACF,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,aAAa,CAAC,CAAC;CACvC;AAED;;;;;;;;;;;;GAYG;AACH,wBAAgB,mBAAmB,CACjC,MAAM,EAAE,qBAAqB,EAC7B,UAAU,EAAE,MAAM,EAClB,YAAY,EAAE,MAAM,EACpB,aAAa,EAAE,MAAM,CAAC,MAAM,EAAE,MAAM,CAAC,GACpC,cAAc,CA8ChB"}

package/dist/lib/fhir-converter/import-manifest.js

@@ -0,0 +1,66 @@
+/**
+ * Import manifest types and builder for FHIR -> Cascade conversion.
+ *
+ * The manifest is built in the CLI command layer (not in the converter library)
+ * after BatchConversionResult is returned. It records what was converted,
+ * what used Layer 1 passthrough, and what was intentionally excluded.
+ */
+import { EXCLUDED_REASONS } from './converters-passthrough.js';
+/**
+ * Build an ImportManifest from a BatchConversionResult.
+ *
+ * Passthrough detection uses cascadeType prefix only:
+ *   - 'fhir:*'          -> full passthrough (fhirJson stored, round-trip supported)
+ *   - 'fhir-minimal:*'  -> minimal passthrough (no fhirJson, round-trip not supported)
+ * All other cascadeType values are Layer 2 mapped records.
+ *
+ * @param result        The conversion result from the converter library
+ * @param sourceFile    The source FHIR file path
+ * @param sourceSystem  The --source-system CLI argument
+ * @param excludedTypes Map of resource types that were excluded with their counts
+ */
+export function buildImportManifest(result, sourceFile, sourceSystem, excludedTypes) {
+    const byType = {};
+    let fullyMapped = 0;
+    let passthrough = 0;
+    for (const r of result.results) {
+        const isFullPassthrough = r.cascadeType.startsWith('fhir:');
+        const isMinimalPassthrough = r.cascadeType.startsWith('fhir-minimal:');
+        const strategy = isMinimalPassthrough
+            ? 'passthrough-minimal'
+            : isFullPassthrough
+                ? 'passthrough'
+                : 'mapped';
+        if (!byType[r.resourceType]) {
+            byType[r.resourceType] = { count: 0, strategy };
+        }
+        byType[r.resourceType].count++;
+        if (isFullPassthrough || isMinimalPassthrough)
+            passthrough++;
+        else
+            fullyMapped++;
+    }
+    // Add excluded types
+    let excluded = 0;
+    for (const [type, count] of Object.entries(excludedTypes)) {
+        byType[type] = {
+            count,
+            strategy: 'excluded',
+            reason: EXCLUDED_REASONS[type] ?? 'Intentionally excluded',
+        };
+        excluded += count;
+    }
+    return {
+        sourceFile,
+        sourceSystem,
+        convertedAt: new Date().toISOString(),
+        summary: {
+            total: fullyMapped + passthrough + excluded,
+            fullyMapped,
+            passthrough,
+            excluded,
+        },
+        byType,
+    };
+}
+//# sourceMappingURL=import-manifest.js.map

package/dist/lib/fhir-converter/import-manifest.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"import-manifest.js","sourceRoot":"","sources":["../../../src/lib/fhir-converter/import-manifest.ts"],"names":[],"mappings":"AAAA;;;;;;GAMG;AAGH,OAAO,EAAE,gBAAgB,EAAE,MAAM,6BAA6B,CAAC;AAqB/D;;;;;;;;;;;;GAYG;AACH,MAAM,UAAU,mBAAmB,CACjC,MAA6B,EAC7B,UAAkB,EAClB,YAAoB,EACpB,aAAqC;IAErC,MAAM,MAAM,GAAkC,EAAE,CAAC;IACjD,IAAI,WAAW,GAAG,CAAC,CAAC;IACpB,IAAI,WAAW,GAAG,CAAC,CAAC;IAEpB,KAAK,MAAM,CAAC,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QAC/B,MAAM,iBAAiB,GAAG,CAAC,CAAC,WAAW,CAAC,UAAU,CAAC,OAAO,CAAC,CAAC;QAC5D,MAAM,oBAAoB,GAAG,CAAC,CAAC,WAAW,CAAC,UAAU,CAAC,eAAe,CAAC,CAAC;QACvE,MAAM,QAAQ,GAA8B,oBAAoB;YAC9D,CAAC,CAAC,qBAAqB;YACvB,CAAC,CAAC,iBAAiB;gBACjB,CAAC,CAAC,aAAa;gBACf,CAAC,CAAC,QAAQ,CAAC;QAEf,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,EAAE,CAAC;YAC5B,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,GAAG,EAAE,KAAK,EAAE,CAAC,EAAE,QAAQ,EAAE,CAAC;QAClD,CAAC;QACD,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,KAAK,EAAE,CAAC;QAE/B,IAAI,iBAAiB,IAAI,oBAAoB;YAAE,WAAW,EAAE,CAAC;;YACxD,WAAW,EAAE,CAAC;IACrB,CAAC;IAED,qBAAqB;IACrB,IAAI,QAAQ,GAAG,CAAC,CAAC;IACjB,KAAK,MAAM,CAAC,IAAI,EAAE,KAAK,CAAC,IAAI,MAAM,CAAC,OAAO,CAAC,aAAa,CAAC,EAAE,CAAC;QAC1D,MAAM,CAAC,IAAI,CAAC,GAAG;YACb,KAAK;YACL,QAAQ,EAAE,UAAU;YACpB,MAAM,EAAE,gBAAgB,CAAC,IAAI,CAAC,IAAI,wBAAwB;SAC3D,CAAC;QACF,QAAQ,IAAI,KAAK,CAAC;IACpB,CAAC;IAED,OAAO;QACL,UAAU;QACV,YAAY;QACZ,WAAW,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;QACrC,OAAO,EAAE;YACP,KAAK,EAAE,WAAW,GAAG,WAAW,GAAG,QAAQ;YAC3C,WAAW;YACX,WAAW;YACX,QAAQ;SACT;QACD,MAAM;KACP,CAAC;AACJ,CAAC"}

package/dist/lib/fhir-converter/index.d.ts

@@ -3,23 +3,39 @@
  *
  * Converts between FHIR R4 JSON and Cascade Protocol RDF (Turtle/JSON-LD).
  *
- * Supported FHIR R4 resource types:
+ * Supported FHIR R4 resource types (Layer 2 — full vocabulary mapping):
  *   - MedicationStatement / MedicationRequest -> health:MedicationRecord
- *   - Condition -> health:ConditionRecord
- *   - AllergyIntolerance -> health:AllergyRecord
- *   - Observation (lab) -> health:LabResultRecord
- *   - Observation (vital) -> clinical:VitalSign
- *   - Patient -> cascade:PatientProfile
- *   - Immunization -> health:ImmunizationRecord
- *   - Coverage -> coverage:InsurancePlan
+ *   - Condition                               -> health:ConditionRecord
+ *   - AllergyIntolerance                      -> health:AllergyRecord
+ *   - Observation (lab)                       -> health:LabResultRecord
+ *   - Observation (vital signs)               -> clinical:VitalSign
+ *   - Patient                                 -> cascade:PatientProfile
+ *   - Immunization                            -> health:ImmunizationRecord
+ *   - Coverage                                -> coverage:InsurancePlan
+ *   - Procedure                               -> clinical:Procedure
+ *   - DocumentReference                       -> clinical:ClinicalDocument
+ *   - Encounter                               -> clinical:Encounter
+ *   - DiagnosticReport                        -> clinical:LaboratoryReport
+ *   - MedicationAdministration                -> clinical:MedicationAdministration
+ *   - Device                                  -> clinical:ImplantedDevice
+ *   - ImagingStudy                            -> clinical:ImagingStudy
+ *   - Claim                                   -> coverage:ClaimRecord
+ *   - ExplanationOfBenefit                    -> coverage:BenefitStatement
+ *
+ * All other resource types receive Layer 1 passthrough (stored as fhir:{Type}).
+ * Explicitly excluded types: SupplyDelivery, CareTeam, CarePlan, Provenance, Medication.
  *
  * Zero network calls. All conversion is local.
  *
- * This module re-exports all public API for backward compatibility.
+ * This module re-exports all public API.
  * Internal implementation is split across:
- *   - types.ts         Shared types, namespaces, and quad helpers
- *   - fhir-to-cascade.ts  FHIR -> Cascade converters
- *   - cascade-to-fhir.ts  Cascade -> FHIR converters
+ *   - types.ts                  Shared types, namespaces, and quad helpers
+ *   - fhir-to-cascade.ts        FHIR -> Cascade dispatcher
+ *   - converters-clinical.ts    Clinical resource converters
+ *   - converters-demographics.ts Patient, immunization, coverage converters
+ *   - converters-clinical-admin.ts Claim, EOB converters
+ *   - converters-passthrough.ts  Layer 1 passthrough for unknown types
+ *   - cascade-to-fhir.ts        Cascade -> FHIR reverse converters
  */
 import { type InputFormat, type OutputFormat, type ConversionResult, type BatchConversionResult } from './types.js';
 export type { InputFormat, OutputFormat, ConversionResult, BatchConversionResult };
@@ -27,8 +43,12 @@ export { convertFhirResourceToQuads, convertFhirToCascade } from './fhir-to-casc
 export { convertCascadeToFhir } from './cascade-to-fhir.js';
 /**
  * Convert an entire FHIR input (single resource or Bundle) to Cascade format.
+ *
+ * @param passthroughMinimal  If true, omits cascade:fhirJson from passthrough records.
+ *                            Round-trip export is not supported in minimal mode.
+ *                            Produces smaller output for display-only scenarios.
  */
-export declare function convert(input: string, from: InputFormat, to: OutputFormat, outputSerialization?: 'turtle' | 'jsonld'): Promise<BatchConversionResult>;
+export declare function convert(input: string, from: InputFormat, to: OutputFormat, outputSerialization?: 'turtle' | 'jsonld', sourceSystem?: string, passthroughMinimal?: boolean): Promise<BatchConversionResult>;
 /**
  * Detect the format of input data by inspecting its content.
  */

package/dist/lib/fhir-converter/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/lib/fhir-converter/index.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAsCG;AAMH,OAAO,EACL,KAAK,WAAW,EAChB,KAAK,YAAY,EACjB,KAAK,gBAAgB,EACrB,KAAK,qBAAqB,EAI3B,MAAM,YAAY,CAAC;AASpB,YAAY,EAAE,WAAW,EAAE,YAAY,EAAE,gBAAgB,EAAE,qBAAqB,EAAE,CAAC;AAGnF,OAAO,EAAE,0BAA0B,EAAE,oBAAoB,EAAE,MAAM,sBAAsB,CAAC;AACxF,OAAO,EAAE,oBAAoB,EAAE,MAAM,sBAAsB,CAAC;AAM5D;;;;;;GAMG;AACH,wBAAsB,OAAO,CAC3B,KAAK,EAAE,MAAM,EACb,IAAI,EAAE,WAAW,EACjB,EAAE,EAAE,YAAY,EAChB,mBAAmB,GAAE,QAAQ,GAAG,QAAmB,EACnD,YAAY,CAAC,EAAE,MAAM,EACrB,kBAAkB,UAAQ,GACzB,OAAO,CAAC,qBAAqB,CAAC,CA0IhC;AAMD;;GAEG;AACH,wBAAgB,YAAY,CAAC,KAAK,EAAE,MAAM,GAAG,WAAW,GAAG,IAAI,CA6B9D"}